Entrez Gene
Resource Report
Resource Website
1000+ mentions
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Entrez Gene (RRID:SCR_002473)
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NCBI_Gene, NCBI Genen NCBI Entrez
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database, data or information resource
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Database for genomes that have been completely sequenced, have active research community to contribute gene-specific information, or that are scheduled for intense sequence analysis. Includes nomenclature, map location, gene products and their attributes, markers, phenotypes, and links to citations, sequences, variation details, maps, expression, homologs, protein domains and external databases. All entries follow NCBI's format for data collections. Content of Entrez Gene represents result of curation and automated integration of data from NCBI's Reference Sequence project (RefSeq), from collaborating model organism databases, and from many other databases available from NCBI. Records are assigned unique, stable and tracked integers as identifiers. Content is updated as new information becomes available.
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gene, gene expression, gene location, gene map, gene prediction, genome, genome sequence analysis, phenotype, nomenclature, gene mapping, protein, genetic code, function, annotation, gold standard, bio.tools
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is used by: Animal QTLdb
is used by: NIF Data Federation
is used by: LIPID MAPS Proteome Database
is used by: DisGeNET
is used by: Nowomics
is used by: Cytokine Registry
is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition
is used by: Vesiclepedia
is listed by: OMICtools
is listed by: re3data.org
is listed by: bio.tools
is listed by: Debian
is related to: Rat Gene Symbol Tracker
is related to: Gene Reference into Function
is related to: Integrated Molecular Interaction Database
is related to: Biomine
is related to: SEGS
is related to: STOP
is related to: Coremine Medical
is related to: Consensus CDS
is related to: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit
is related to: Array Information Library Universal Navigator
is related to: biomaRt
has parent organization: NCBI
works with: Open Regulatory Annotation Database
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PMID:17148475
PMID:21115458 |
Free, Freely available |
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nif-0000-02801, biotools:entrez_gene, OMICS_01651, r3d100010650 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene, http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene, https://bio.tools/entrez_gene, https://doi.org/10.17616/R3603S |
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SCR_002473 |
NCBI Gene, Gene - Gene mapped phenotypes, Gene - Gene and mapped phenotypes, Gene Database, GeneID |
2026-08-02 09:03:20 |
2830 |
NCBI
Resource Report
Resource Website
10000+ mentions
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NCBI (RRID:SCR_006472)
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NCBI
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nonprofit organization
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A portal to biomedical and genomic information. NCBI creates public databases, conducts research in computational biology, develops software tools for analyzing genome data, and disseminates biomedical information for the better understanding of molecular processes affecting human health and disease.
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biomedical, genomic, molecular biology, health, disease, database, computational biology, bio.tools
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is used by: NIF Data Federation
is listed by: NIDDK Information Network (dkNET)
is listed by: bio.tools
is listed by: Debian
is related to: AmiGO
is related to: NCBI Viral Genomes
is related to: Clone DB
is related to: PubReader
is related to: OMIA - Online Mendelian Inheritance in Animals
is related to: European Nucleotide Archive (ENA)
is related to: Plant Co-expression Annotation Resource
is related to: METAGENOTE
is related to: Phyutility
is related to: CaspBase
is related to: Prokaryotic Genomes Automatic Annotation Pipeline
has parent organization: National Library of Medicine
is parent organization of: MedGen
is parent organization of: dbSTS
is parent organization of: PubMed Health
is parent organization of: BLASTP
is parent organization of: GQuery
is parent organization of: BLASTN
is parent organization of: GTEx eQTL Browser
is parent organization of: BLASTX
is parent organization of: Homology Maps Page
is parent organization of: PEDHUNTER
is parent organization of: Conserved Domain Database
is parent organization of: NCBI Genome Survey Sequences Database
is parent organization of: High Throughput Genomic Sequences Division
is parent organization of: AceView
is parent organization of: dbMHC
is parent organization of: dbSNP
is parent organization of: Entrez Gene
is parent organization of: NCBI Genome
is parent organization of: NCBI database of Genotypes and Phenotypes (dbGap)
is parent organization of: GenBank
is parent organization of: International HapMap Project
is parent organization of: IgBLAST
is parent organization of: Lowes Syndrome Mutation Database
is parent organization of: HomoloGene
is parent organization of: Influenza Virus Resource
is parent organization of: Distant Regulatory Elements
is parent organization of: e-PCR
is parent organization of: MapViewer
is parent organization of: Primer-BLAST
is parent organization of: dbVar
is parent organization of: NCBI Taxonomy
is parent organization of: NCBI Protein Database
is parent organization of: Gene Reference into Function
is parent organization of: Protein Clusters
is parent organization of: RefSeq
is parent organization of: TPA
is parent organization of: GENSAT at NCBI - Gene Expression Nervous System Atlas
is parent organization of: COBALT: Constraint-based Multiple Alignment Tool
is parent organization of: PubMed Central
is parent organization of: UniLib
is parent organization of: NCBI Structure
is parent organization of: PubChem
is parent organization of: Anopheles gambiae (African malaria mosquito) genome view
is parent organization of: UniGene
is parent organization of: NLM Catalog
is parent organization of: Entrez GEO Profiles
is parent organization of: Nucleotide database
is parent organization of: NCBI BioSystems Database
is parent organization of: CBLAST
is parent organization of: NCBI BioProject
is parent organization of: NCBI Probe
is parent organization of: PubMed
is parent organization of: NCBI BioSample
is parent organization of: NCBI Nucleotide
is parent organization of: NCBI Structure: Cn3D
is parent organization of: NCBI BLAST
is parent organization of: IBIS: Inferred Biomolecular Interactions Server
is parent organization of: NCBI Sequence Read Archive (SRA)
is parent organization of: Gene Expression Omnibus (GEO)
is parent organization of: NCBI Popset
is parent organization of: PIE the search
is parent organization of: Genetic Testing Registry
is parent organization of: NCBI Resource List
is parent organization of: NCBI dbRBC
is parent organization of: NCBI YouTube Channel
is parent organization of: NCBI Epigenomics
is parent organization of: ClinVar
is parent organization of: Genome Reference Consortium
is parent organization of: GeneReviews
is parent organization of: Molecular Imaging and Contrast Agent Database
is parent organization of: Consensus CDS
is parent organization of: UniSTS
is parent organization of: HIV-1 Human Protein Interaction Database
is parent organization of: Assay Guidance Manual
is parent organization of: Bookshelf
is parent organization of: COG
is parent organization of: Gene Expression Omnibus
is parent organization of: Molecular Modelling DataBase
is parent organization of: Organelle Genome Resources
is parent organization of: SKY/M-FISH/CGH
is parent organization of: dbEST
is parent organization of: JournalReview.org
is parent organization of: NCBI GenBank via FTP
is parent organization of: PubChem Compound
is parent organization of: Molecular Modeling DataBase
is parent organization of: Vector Alignment Search Tool
is parent organization of: PubChem BioAssay
is parent organization of: NCBI Genome Workbench
is parent organization of: TBLASTN
is parent organization of: TBLASTX
is parent organization of: Mega BLAST
is parent organization of: Genetic Codes
is parent organization of: HIV-1, Human Protein Interaction Database
is parent organization of: PubReader
is parent organization of: PubChem Substance
is parent organization of: OMIA - Online Mendelian Inheritance in Animals
is parent organization of: OMIM
is parent organization of: 1000 Genomes: A Deep Catalog of Human Genetic Variation
is parent organization of: GeneTests
is parent organization of: NCBI Genome Survey Sequences Database
is parent organization of: MagicBlast
is parent organization of: RefSeq
is parent organization of: Sequin
is parent organization of: Batch Entrez
is parent organization of: Entrez
is parent organization of: tbl2asn
is parent organization of: Whole Genome Shotgun (WGS) Project
is parent organization of: Digital Differential Display (DDD)
is parent organization of: BLASTClust
is parent organization of: PASC
is parent organization of: Open Reading Frame Finder
is parent organization of: Genotyping
works with: Human Mouse Disease Connection
works with: A plasmid Editor
works with: Database of genes related to Repeat Expansion Diseases
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Public, The community can contribute to this resource |
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nif-0000-00139, biotools:ncbi_resources |
https://bio.tools/ncbi_resources |
http://www.ncbi.nih.gov/ |
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SCR_006472 |
National Center for Biotechnology Information, NCBI - National Center for Biotechnology Information |
2026-08-01 12:03:10 |
25993 |
re3data.org
Resource Report
Resource Website
50+ mentions
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re3data.org (RRID:SCR_006782)
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re3data.org
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registry, data or information resource, database
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Global registry of research data repositories from all academic disciplines that allows the easy identification of appropriate research data repositories, both for data producers and users. Information icons display principal attributes of a repository that can be used for multi-faceted searches. Repository operators can suggest their infrastructures to be listed via a simple application form. A repository is indexed when the minimum requirements are met, i.e. mode of access to the data and repository, as well as the terms of use.
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vocabulary, registry, metadata standard, data sharing, FASEB list
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lists: Academic Seismic Portal at UTIG
lists: National Addiction and HIV Data Archive Program (NAHDAP)
lists: Alaska Climate Research Center
lists: MINT
lists: Internet Archive
lists: MatrixDB
lists: Animal QTLdb
lists: MPIDB
lists: BeetleBase
lists: Conserved Domain Database
lists: NeuroMorpho.Org
lists: Marine Geoscience Data System
lists: Cell Centered Database
lists: dbMHC
lists: Human Mortality Database
lists: UniProt
lists: Ligand-Gated Ion Channel Database
lists: EcoGene
lists: NCBI Genome
lists: ESTHER
lists: Genomes Online Database
lists: Gramene
lists: American FactFinder
lists: Human Proteinpedia
lists: IMGT/HLA
lists: Influenza Virus Resource
lists: DOE Joint Genome Institute
lists: MetaCrop
lists: ISPS Data Archive
lists: MorphBank
lists: miRBase
lists: Inter-university Consortium for Political and Social Research (ICPSR)
lists: Mouse Phenome Database (MPD)
lists: MorphoBank
lists: dbVar
lists: Open Science Framework
lists: TalkBank
lists: Nucleic Acid Database
lists: NCBI Taxonomy
lists: NCBI Protein Database
lists: PHI-base
lists: Alberta Geological Survey
lists: Protein Clusters
lists: Reactome
lists: Cell Image Library (CIL)
lists: eyeMoviePedia
lists: ALLBUS - German General Social Survey
lists: TPA
lists: Agency for Healthcare Research and Quality
lists: Alaska Satellite Facility
lists: Current German Weather Stations
lists: NCBI Structure
lists: BOLD
lists: PDBe - Protein Data Bank in Europe
lists: FishBase
lists: Nucleotide database
lists: NCBI BioSystems Database
lists: SGD
lists: Data.gov
lists: RHEA
lists: European Bioinformatics Institute
lists: NCBI Probe
lists: NCBI Nucleotide
lists: Database of Genomic Variants Archive (DGVa)
lists: NCBI Popset
lists: Whole Brain Atlas
lists: EMAGE Gene Expression Database
lists: Limited Access Datasets From NIMH Clinical Trials
lists: Tree of Life Web Project
lists: TreeBASE
lists: UCSC Genome Browser
lists: UniPROBE
lists: Crystallography Open Database (COD)
lists: National Archive of Computerized Data on Aging (NACDA)
lists: EOL - Encyclopedia of Life
lists: VectorBase
lists: caArray
lists: NCBI Epigenomics
lists: GWAS Central
lists: QTL Archive
lists: Proteome Commons
lists: XNAT Central
lists: 4TU.Datacentrum
lists: Amazon Web Services Public Data Sets
lists: ChemSpider
lists: DataStaR
lists: Rat Genome Database (RGD)
lists: Atlas of Living Australia
lists: Electron Microscopy Data Bank at PDBe (MSD-EBI)
lists: Phytozome
lists: FlyBase
lists: MaizeGDB
lists: Tuberculosis Database
lists: InterPro
lists: UNAVCO
lists: The Human Protein Atlas
lists: InnateDB
lists: UniSTS
lists: Launchpad
lists: Surveillance Epidemiology and End Results
lists: FAOSTAT
lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database
lists: HIstome: The Histone Infobase
lists: HPRD - Human Protein Reference Database
lists: Biological General Repository for Interaction Datasets (BioGRID)
lists: INFEVERS
lists: Reciprocal Net
lists: Africa Centre for Health and Population Studies
lists: BeeBase
lists: Biodiversity Heritage Library
lists: Databrary
lists: ACADIS Gateway
lists: ACEpepDB
lists: AIMS Data Centre
lists: ALADDIN
lists: ASTER
lists: Access to Archival Databases
lists: AidData
lists: Alaska Ocean Observing System
lists: J. Craig Venter Institute
lists: Wellcome Trust Sanger Institute; Hinxton; United Kingdom
lists: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
lists: myExperiment
lists: BioModels
lists: Addgene
lists: Antarctic and Southern Ocean Data Portal
lists: OpenTopography
lists: National Snow and Ice Data Center
lists: Biological Magnetic Resonance Data Bank (BMRB)
lists: dbSNP
lists: Ensembl
lists: DNA DataBank of Japan (DDBJ)
lists: Entrez Gene
lists: Zebrafish Information Network (ZFIN)
lists: GitHub
lists: DrugBank
lists: NCBI database of Genotypes and Phenotypes (dbGap)
lists: Gene Expression Nervous System Atlas
lists: SumsDB
lists: GenBank
lists: GermOnline
lists: HGNC
lists: Greengenes
lists: Neuroscience Information Framework
lists: HomoloGene
lists: ArrayExpress
lists: JASPAR
lists: WormBase
lists: Database of Interacting Proteins (DIP)
lists: EMDataResource.org
lists: ResearchCompendia
lists: Proteomics Identifications (PRIDE)
lists: RefSeq
lists: FAIRsharing
lists: PubChem
lists: FigShare
lists: UniGene
lists: NIMH Data Archive
lists: TAIR
lists: NCBI BioProject
lists: SMD
lists: OpenNeuro
lists: SoyBase
lists: Beta Cell Biology Consortium
lists: Biomedical Informatics Research Network
lists: Dryad Digital Repository
lists: Atlantic Canada Conservation Data Centre
lists: Agri-environmental Research Data Repository
lists: Australian Antarctic Data Centre
lists: Antibody Registry
lists: Mouse Genome Informatics (MGI)
lists: European Nucleotide Archive (ENA)
lists: NIDDK Central Repository
lists: GigaScience
lists: PeptideAtlas
lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation
lists: IntAct
lists: fMRI Data Center
lists: Gene Expression Omnibus
lists: Data and Specimen Hub (NICHD DASH)
lists: NIDA Data Share
lists: The NINDS Human Cell and Data Repository (NHCDR)
lists: Microphysiology Systems Database
lists: Dataverse Network Project
lists: Mendeley
lists: Vivli
lists: Metabolomics Workbench
lists: Qualitative Data Repository
lists: Protocols.io
lists: ZENODO
lists: STRENDA
lists: Code Ocean
lists: Brain Image Library
lists: German Collection of Microorganisms and Cell Cultures
lists: INPTDAT
lists: DataONE
lists: GBIF - Global Biodiversity Information Facility
lists: Lamont-Doherty Core Repository
lists: CaltechDATA
lists: Synapse
lists: Incorporated Research Institutions for Seismology
lists: Cancer Imaging Archive (TCIA)
lists: Mendeley Data
lists: UK Data Archive
lists: GigaDB
lists: PhysioNet
lists: Project Data Sphere
lists: Influenza Research Database (IRD)
lists: Simtk.org
lists: ResearchGate
lists: Virus Pathogen Resource (ViPR)
lists: Cambridge Structural Data Base
lists: 4TU.ResearchData
lists: Aperta Turkey Open Archive
lists: Polar Data Catalogue
lists: Arch
lists: Australian Data Archive
lists: Australian Ocean Data Network
lists: Barbara A. Mikulski Archive for Space Telescopes
lists: Aston Data Explorer
lists: Birkbeck Research Data
lists: B2SHARE Eudat
lists: BioHeritage National Science Challenge Data Repository
lists: Bolin Centre Database
lists: Brown Digital Repository
is listed by: FORCE11
is related to: U.S. Census Bureau
is related to: Rat Genome Database (RGD)
is related to: ResearchCompendia
has parent organization: Humboldt University of Berlin; Berlin; Germany
has parent organization: Karlsruhe Institute of Technology; Karlsruhe; Germany
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DFG |
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The community can contribute to this resource |
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nlx_152589 |
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SCR_006782 |
Registry of Research Data Repositories, re3data.org: Registry of Research Data Repositories, re3data |
2026-08-01 12:09:57 |
76 |
Pathway Analysis Tool for Integration and Knowledge Acquisition
Resource Report
Resource Website
1+ mentions
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Pathway Analysis Tool for Integration and Knowledge Acquisition (RRID:SCR_002100)
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PATIKA
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database, data or information resource, pathway analysis software
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The human pathway database which contains different biological entities and reactions and software tools for analysis. PATIKA Database integrates data from several sources, including Entrez Gene, UniProt, PubChem, GO, IntAct, HPRD, and Reactome. Users can query and access this data using the PATIKAweb query interface. Users can also save their results in XML or export to common picture formats. The BioPAX and SBML exporters can be used as part of this Web service.
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human, pathway, reaction, database, pathway analysis software, web service, biological entity, biological reaction
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uses: Entrez Gene
uses: UniProt
uses: PubChem
uses: Gene Ontology
uses: IntAct
uses: HPRD - Human Protein Reference Database
uses: Reactome
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PMID:12117798
PMID:14960461 |
THIS RESOURCE IS NO LONGER IS SERVICE. |
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nif-0000-20882 |
http://www.cs.bilkent.edu.tr/~patikaweb/ |
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SCR_002100 |
Pathway Analysis Tool for Integration and Knowledge Acquisition (PATIKA), PATIKA - Pathway Analysis Tools for Integration and Knowledge Acquisition |
2026-08-02 09:03:27 |
2 |
Animal QTLdb
Resource Report
Resource Website
50+ mentions
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Animal QTLdb (RRID:SCR_001748)
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Animal QTLdb
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data or information resource, database, data repository, service resource, storage service resource
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Database of trait mapping data, i.e. QTL (phenotype / expression, eQTL), candidate gene and association data (GWAS) and copy number variations (CNV) mapped to livestock animal genomes, to facilitate locating and comparing discoveries within and between species. New data and database tools are continually developed to align various trait mapping data to map-based genome features, such as annotated genes. QTLdb is open to house QTL/association date from other animal species where feasible. Most scientific journals require that any original QTL/association data be deposited into public databases before paper may be accepted for publication. User curator accounts are provided for direct data deposit. Users can download QTLdb data from each species or individual chromosome.
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chromosome, comparative genomics, dna sequence, genome, livestock, quantitative trait locus, non-human animal, structural genomics, single-nucleotide polymorphism, gene association, genomics, trait, copy number variation, trait, phenotype, expression, eqtl, genome wide association study, candidate gene, genotype
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uses: Entrez Gene
uses: Ensembl
is used by: NIF Data Federation
is used by: MONARCH Initiative
is listed by: re3data.org
is related to: Ensembl Variation
is related to: Vertebrate Trait Ontology
has parent organization: Iowa State University; Iowa; USA
has parent organization: NAGRP Bioinformatics Coordination Program
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USDA NRSP-8;
USDA 2007-04187 |
PMID:23180796
PMID:17245610 |
Free, Freely available |
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nif-0000-02550, r3d100010744 |
http://www.animalgenome.org/QTLdb/ |
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SCR_001748 |
Animal QTL database, Animal Quantitative Trait Loci database, AnimalQTLdb, Animal Quantitative Trait Loci (QTL) database |
2026-08-02 09:03:08 |
50 |
NIF Data Federation
Resource Report
Resource Website
10+ mentions
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NIF Data Federation (RRID:SCR_004834)
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Data Federation
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data or information resource, service resource, portal
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Service that partners with the community to expose and simultaneously drill down into individual databases and data sets and return relevant content. This type of content, part of the so called hidden Web, is typically not indexed by existing web search engines. Every record links back to the originating site. In order for NIF to directly query these independently maintained databases and datasets, database providers must register their database or dataset with the NIF Data Federation and specify permissions. Databases are concept mapped for ease of sharing and to allow better understanding of the results. Learn more about registering your resource, http://neuinfo.org/nif_components/disco/interoperation.shtm Search results are displayed under the Data Federation tab and are categorized by data type and nervous system level. In this way, users can easily step through the content of multiple resources, all from the same interface. Each federated resource individually displays their query results with links back to the relevant datasets within the host resource. This allows users to take advantage of additional views on the data and tools that are available through the host database. The NIF site provides tutorials for each resource, indicated by the Professor Icon professor icon showing users how to navigate the results page once directed there through the NIF. Additionally, query results may be exported as an Excel document. Note: NIF is not responsible for the availability or content of these external sites, nor does NIF endorse, warrant or guarantee the products, services or information described or offered at these external sites. Integrated Databases: Theses virtual databases created by NIF and other partners combine related data indexed from multiple databases and combine them into one view for easier browsing. * Integrated Animal View * Integrated Brain Gene Expression View * Integrated Disease View * Integrated Nervous System Connectivity View * Integrated Podcasts View * Integrated Software View * Integrated Video View * Integrated Jobs * Integrated Blogs For a listing of the Federated Databases see, http://neuinfo.org/mynif/databaseList.php or refer to the Resources Listed by NIF Data Federation table below.
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semantics, neuroscience, animal, annotation, antibody, biospecimen, brain activation foci, clinical trial, connectivity, dataset, disease, drug, grant, image, microarray, model, multimedia, negative data, pathway, people, plasmid, registry, software, brain region, cell, gene, molecule, multi-level, nervous system, nervous system function, model
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uses: MNI Podcasts
uses: Educational Resources in Neuroscience
uses: Mind Hacks
uses: BAMS Nested Regions
uses: Indeed
uses: NINDS Disorder Index
uses: Drug Design Data Resource
uses: PubMed Health
uses: This Week In Science
uses: Science Talk
uses: BAMS Connectivity
uses: Lady Scientist
uses: Psychology Corner
uses: Wired Science
uses: CENtral Science
uses: RetractionWatch.com
uses: The Guardian: Science Weekly
uses: H2SO4Hurts
uses: 60-Second Mind
uses: PLoS Blogs
uses: Clarity resources
uses: Open Source Brain
uses: Diabetic Complications Consortium
uses: Integrated Animals
uses: Kawasaki Disease Dataset
uses: EEGbase
uses: Integrated Models
uses: Lifespan Observations Database
uses: NIF Web Services
uses: NIF Blog
uses: ATCC
uses: Cerebellar Platform
uses: Brain Machine Interface Platform
uses: Rafael Yustes Laboratory
uses: ASAP
uses: NIH VideoCasting
uses: NIDA Data Share
uses: Neurofed
uses: Candida Genome Database
uses: Addgene
uses: ASPGD
uses: Glomerular Activity Response Archive
uses: WikiPathways
uses: AmiGO
uses: NeuroMorpho.Org
uses: Cell Centered Database
uses: Integrated
uses: Community Structure-Activity Resource
uses: ClinicalTrials.gov
uses: Ensembl
uses: GeneNetwork
uses: Avian Brain Circuitry Database
uses: EcoCyc
uses: Entrez Gene
uses: Zebrafish Information Network (ZFIN)
uses: Arredondo ANT fNIRS dataset1
uses: Grants.gov
uses: T3DB
uses: Simtk.org
uses: PharmGKB
uses: DrugBank
uses: Aging Genes and Interventions Database
uses: Gene Expression Nervous System Atlas
uses: SumsDB
uses: bioDBcore
uses: BioNumbers
uses: Gene Ontology
uses: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat
uses: Gramene
uses: Retina Project
uses: HomoloGene
uses: ArrayExpress
uses: Journal of Visualized Experiments
uses: Allen Mouse Brain Reference Atlas
uses: Gene Weaver
uses: Visiome Platform
uses: Developmental Therapeutics Program
uses: NeuroMab
uses: WormBase
uses: NeuronDB
uses: Integrated Grants
uses: studyforrest.org
uses: BrainInfo
uses: Mouse Phenome Database (MPD)
uses: NCBI Taxonomy
uses: NCBI Protein Database
uses: Psychoactive Drug Screening Program Ki Database
uses: Nuclear Receptor Signaling Atlas
uses: Brede Database
uses: NeuroImaging Tools and Resources Collaboratory (NITRC)
uses: Mouse Genome Informatics Transgenes
uses: Reactome
uses: Cell Image Library (CIL)
uses: BAMS Cells
uses: Synapse Web
uses: Integrated Videos
uses: NeuroVault
uses: Royal College of Psychiatrists Podcasts
uses: WU-Minn HCP 500 Subjects MR and MEG Release
uses: Data.gov Science and Research Data Catalog
uses: NITRC-IR
uses: One Mind Biospecimen Bank Listing
uses: Integrated Brain Gene Expression
uses: BrainSpan
uses: All In The Mind
uses: Scientific American Cross-Check
uses: PubChem
uses: NeuroPod
uses: BrainSpan
uses: Health.Data.gov
uses: Biointeractive
uses: UniProtKB
uses: Gray Matters
uses: dkCOIN
uses: Brain Science Podcast
uses: NIGMS Human Genetic Cell Repository
uses: DISCO
uses: GeneDB Lmajor
uses: TAIR
uses: ScienceNOW
uses: Daily Scan
uses: SGD
uses: Integrated Software
uses: BrainPod
uses: GeneDB Tbrucei
uses: MPO
uses: PANTHER
uses: Neurology Podcast
uses: Integrated Disease
uses: VMD
uses: UCSF Laboratory for Visual Neuroscience
uses: NIMH Chemical Synthesis and Drug Supply Program
uses: NIH Neuroscience Microarray Consortium
uses: SGN
uses: Protocol Online - Your labs reference book
uses: Integrated Podcasts
uses: OpenNeuro
uses: National Academy of Sciences Podcasts
uses: Beta Cell Biology Consortium
uses: Naturejobs
uses: Scientific American Guest Blog
uses: jobs.ac.uk
uses: New Scientist Jobs
uses: Science Careers
uses: Access-ScienceJobs.co.uk
uses: ScienceBlogs: Life Science
uses: ScienceBlogs: Brain and Behavior
uses: TheScienceJobs.com
uses: Nature Network Blogs
uses: The Guardian: Science
uses: LabSpaces
uses: ScienceBlogs: Medicine and Health
uses: Scientific American Observations
uses: Scientific American Bering in Mind
uses: QUEST
uses: Daring Nucleic Adventures - genegeek
uses: Oxford Science Blog
uses: Sciblogs
uses: New York Times - Well
uses: SciLogs
uses: Cassandras Tears
uses: BioPortfolio
uses: Now at NEJM
uses: 1000 Functional Connectomes Project
uses: Integrated Jobs
uses: Integrated Blogs
uses: JCVI CMR
uses: SciCrunch Registry
uses: Neuroskeptic
uses: CRCNS
uses: Expression Atlas of the Marmoset
uses: IXI dataset
uses: Integrated Auto-Extracted Annotation
uses: EU Clinical Trials Register
uses: Integrated Clinical Trials
uses: Human Brain Atlas
uses: goCognitive
uses: Law and Neuroscience
uses: International Mouse Phenotyping Consortium (IMPC)
uses: ClinVar
uses: Integrated Gene-Disease Interaction
uses: XNAT Central
uses: neuroelectro
uses: Integrated Nervous System Connectivity
uses: Antibody Registry
uses: OMIA - Online Mendelian Inheritance in Animals
uses: OMIM
uses: Science Podcast
uses: Mouse Genome Informatics (MGI)
uses: Monster
uses: NCBI
uses: Wired Science Blogs
uses: F1000 Posters
uses: Neurophilosophy
uses: Comparative Toxicogenomics Database (CTD)
uses: FlyBase
uses: GeneReviews
uses: GeneDB Pfalciparum
uses: Naturally Selected
uses: PomBase
uses: Pseudomonas Genome Database
uses: The Guardian: Science Videos
uses: Orphanet
uses: Dictyostelium discoideum genome database
uses: PeptideAtlas
uses: NeuroSynth
uses: neuropathology blog
uses: Genomes Unzipped
uses: National Institutes of Health Research Portfolio Online Reporting Tool
uses: BrainMaps.org
uses: It Takes 30
uses: Gait in Parkinson's Disease
uses: Physiobank
uses: Gait Dynamics in Neuro-Degenerative Disease Data Base
uses: American Journal of Psychiatry Podcasts
uses: Neurodatabase.org
uses: Brain Architecture Management System
uses: RanchoBiosciences
uses: ModelDB
uses: CoCoMac
uses: Olfactory Bulb Odor Map DataBase (OdorMapDB)
uses: Gene Expression Omnibus
uses: Caenorhabditis Genetics Center
uses: Labome
uses: Open Access Series of Imaging Studies
uses: Biological General Repository for Interaction Datasets (BioGRID)
uses: Olfactory Receptor DataBase
uses: T1DBase
uses: Gemma
uses: CellML Model Repository
uses: ResearchCrossroads
uses: Biocompare
uses: BioNOT
uses: Hays
uses: Research Blogging
uses: Discover Magazine
uses: PolygenicBlog
uses: Kawasaki Disease Dataset2
uses: Allen Mouse Brain Connectivity Atlas
uses: Integrated Manually Extracted Annotation
uses: Roadmap Epigenomics Project
uses: Integrated Cell Lines
uses: National Mouse Metabolic Phenotyping Centers
uses: Mendelspod
uses: Integrated Snippets
uses: Integrated Datasets
uses: Nature Podcast
uses: GWAS: Catalog of Published Genome-Wide Association Studies
uses: KEGG
uses: USC Multimodal Connectivity Database
uses: Inside NIA: A Blog for Researchers
uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
uses: NIF Registry Automated Crawl Data
uses: Genetic Analysis Software
uses: anage
uses: Intestinal Stem Cell Consortium
uses: Animal QTLdb
uses: elements of morphology
uses: Human Life-Table Database
uses: Clinical Genomic Database
uses: NIDDK Central Repository
uses: MONARCH Initiative
uses: Human Phenotype Ontology
is used by: SciCrunch
is used by: NIDDK Information Network (dkNET)
lists: AutDB
lists: Drug Related Gene Database
lists: Gene Ontology Tools
lists: CHEBI
is listed by: 3DVC
is related to: International Mouse Strain Resource
is related to: Internet Brain Volume Database
is related to: Resource Identification Portal
is related to: Rat Genome Database (RGD)
is related to: VISTA Enhancer Browser
is related to: NIH Human Pluripotent Stem Cell Registry
is related to: Zebrafish International Resource Center
is related to: Bloomington Drosophila Stock Center
is related to: Journal of Comparative Neurology Antibody database
has parent organization: Neuroscience Information Framework
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NIDA ;
NIH Blueprint for Neuroscience Research ;
U.S. Department of Health and Human Services HHSN27120080035C |
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Refer to individual databases |
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nlx_81822 |
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http://neuinfo.org/nif/nifgwt.html?query=* |
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SCR_004834 |
Neuroscience Information Framework Data Federation |
2026-08-02 09:04:03 |
28 |
Biomine
Resource Report
Resource Website
1+ mentions
|
Biomine (RRID:SCR_003552)
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Biomine
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database, data or information resource, service resource
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Service that integrates cross-references from several biological databases into a graph model with multiple types of edges, such as protein interactions, gene-disease associations and gene ontology annotations. Edges are weighted based on their type, reliability, and informativeness. In particular, it formulates protein interaction prediction and disease gene prioritization tasks as instances of link prediction. The predictions are based on a proximity measure computed on the integrated graph.
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gene, protein, genetics, visualization, connection, biological entity, protein interaction, disease gene, link prediction
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is related to: Entrez Gene
is related to: Gene Ontology
is related to: HomoloGene
is related to: InterPro
is related to: OMIM
is related to: STRING
is related to: UniProtKB
is related to: UniProt
is related to: GoMapMan
has parent organization: University of Helsinki; Helsinki; Finland
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PMID:22672646 |
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nlx_157687 |
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SCR_003552 |
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2026-08-02 09:03:43 |
4 |
SEGS
Resource Report
Resource Website
1+ mentions
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SEGS (RRID:SCR_003554)
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SEGS
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production service resource, data analysis service, service resource, analysis service resource
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A web tool for descriptive analysis of microarray data. The analysis is performed by looking for descriptions of gene sets that are statistically significantly over- or under-expressed between different scenarios within the context of a genome-scale experiments (DNA microarray). Descriptions are defined by using the terms from the Gene Ontology (GO), the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways and gene-gene interactions found in the ENTREZ database. Gene annotations by GO and KEGG terms can also be found in the ENTREZ database. The tool provides three procedures for testing the enrichment of the gene sets (over- or under-expressed): Fisher's exact test, GSEA and PAGE, and option for combining the results of the tests. Because of the multiple-hypothesis testing nature of the problem, all the p-values are computed using the permutation testing method.
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microarray, pathway, gene-gene interaction, gene, interaction, annotation, gene expression, ortholog, molecular function, biological process, cellular component, enriched gene set, gene set
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is related to: Gene Ontology
is related to: Entrez Gene
is related to: KEGG
is related to: GoMapMan
has parent organization: Jozef Stefan Institute; Ljubljana; Slovenia
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PMID:18234563 |
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nlx_157688 |
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SCR_003554 |
Search for Enriched Gene Sets |
2026-08-02 09:03:59 |
3 |
Rat Gene Symbol Tracker
Resource Report
Resource Website
10+ mentions
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Rat Gene Symbol Tracker (RRID:SCR_003261)
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RGST
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database, data or information resource
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THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone., documented September 2, 2016. Database for defining official rat gene symbols. It includes rat gene symbols from three major sources: the Rat Genome Database (RGD), Ensembl, and NCBI-Gene. All rat symbols are compared with official symbols from orthologous human genes as specified by the Human Gene Nomenclature Committee (HGNC). Based on the outcome of the comparisons, a rat gene symbol may be selected. Rat symbols that do not match a human ortholog undergo a strict procedure of comparisons between the different rat gene sources as well as with the Mouse Genome Database (MGD). For each rat gene this procedure results in an unambiguous gene designation. The designation is presented as a status level that accompanies every rat gene symbol suggested in the database. The status level describes both how a rat symbol was selected, and its validity. Rat Gene Symbol Tracker approves rat gene symbols by an automatic procedure. The rat genes are presented with links to RGD, Ensembl, NCBI Gene, MGI and HGNC. RGST ensures that each acclaimed rat gene symbol is unique and follows the guidelines given by the RGNC. To each symbol a status level associated, describing the gene naming process.
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gene, orthology, naming, gene symbol, nomenclature, human, mouse
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is related to: Rat Genome Database (RGD)
is related to: Entrez Gene
is related to: Ensembl
is related to: Mouse Genome Informatics (MGI)
is related to: HGNC
has parent organization: RatMap
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Swedish MRC ;
Nilsson-Ehle Foundation ;
Sven and Lilly Lawski Foundation ;
Erik Philip-Sorensen Foundation ;
Wilhelm and Martina Lundgren Research Foundation ;
SWEGENE Foundation |
PMID:18215257 |
THIS RESOURCE IS NO LONGER IN SERVICE |
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nif-0000-31426 |
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SCR_003261 |
RGST (Rat Gene Symbol Tracker), RGST - Rat Gene Symbol Tracker |
2026-08-02 09:03:56 |
14 |
DisGeNET
Resource Report
Resource Website
1000+ mentions
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DisGeNET (RRID:SCR_006178)
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DisGeNET
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database, data or information resource
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Database and discovery platform containing publicly available collections of genes and variants associated to human diseases. Integrates data from curated repositories, GWAS catalogues, animal models and scientific literature.
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gene, disease, gene-disease association, gene-disease ontology, gene-disease text mining, text mining, genotype-phenotype, rdf, genotype, phenotype, gene-disease, variant-disease, FASEB list
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uses: Comparative Toxicogenomics Database (CTD)
uses: Genetic Association Database
uses: UniProt
uses: Mouse Genome Database
uses: Reactome
uses: Unified Medical Language System
uses: Entrez Gene
uses: MEDLINE
uses: National Center for Biomedical Ontology
uses: National Cancer Institute Thesaurus
uses: Human Phenotype Ontology
uses: Semanticscience Integrated Ontology
uses: Cytoscape
uses: Literature-derived human gene-disease network
uses: Rat Genome Database (RGD)
uses: National Library of Medicine
uses: PsyGeNET
is used by: HmtPhenome
is listed by: 3DVC
is affiliated with: Gene-Disease Association Type Ontology
has parent organization: Pompeu Fabra University; Barcelona; Spain
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EFPIA ;
Instituto de Salud Carlos III-Fondo Europeo de Desarrollo Regional ;
Elixir-Excelerate ;
Innovative Medicines Initiative Joint Undertaking ;
European Union Seventh Framework Programme ;
European Union Horizon 2020 |
PMID:27924018
PMID:25877637
PMID:21695124
PMID:20861032 |
Restricted |
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nlx_151710, r3d100013301 |
https://doi.org/10.17616/R31NJMR9 |
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SCR_006178 |
database of gene disease associations |
2026-08-02 09:04:31 |
2210 |
Consensus CDS
Resource Report
Resource Website
100+ mentions
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Consensus CDS (RRID:SCR_006729)
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CCDS
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database, data or information resource
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Database (anonymous FTP) resulting from a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The long term goal is to support convergence towards a standard set of gene annotations. Collaborators are EBI, NCBI, UCSC, WTSI and the initial results are also available from the participants'''' genome browser Web sites. In addition, CCDS identifiers are indicated on the relevant NCBI RefSeq and Entrez Gene records and in Map Viewer displays of RNA (RefSeq) and Gene annotations on the reference assembly.
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human genome sequence, human protein, mouse genome sequence, mouse protein, protein coding region, gene, genome sequence, genome, sequence, gene annotation, protein, gold standard
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is listed by: OMICtools
is related to: Entrez Gene
is related to: HomoloGene
is related to: MapViewer
is related to: VEGA
has parent organization: NCBI
has parent organization: European Bioinformatics Institute
has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom
has parent organization: University of California at Santa Cruz; California; USA
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PMID:24217909
PMID:22434842
PMID:19498102 |
The community can contribute to this resource, Acknowledgement requested |
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nif-0000-02645, OMICS_01535 |
http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi |
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SCR_006729 |
CCDS Database, NCBI Consensus CDS protein set, NCBI CCDS Database |
2026-08-02 09:04:57 |
230 |
Coremine Medical
Resource Report
Resource Website
1+ mentions
|
Coremine Medical (RRID:SCR_005323)
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Coremine Medical
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service resource
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Service to access comprehensive information on diseases, drugs, treatments and medical biology. It is ideal for those seeking an overview of a complex subject while allowing the possibility to drill down to specific details. Search results are presented in a dashboard format comprized of panels containing various categories of information ranging from introductory sources to the latest scientific articles.
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disease, drug, treatment, medical biology, text mining, health, medicine, biology, network, database
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is listed by: OMICtools
is related to: MeSH
is related to: Entrez Gene
is related to: MEDLINE
is related to: PubMed
is related to: DrugBank
is related to: Gene Ontology
is related to: UniProt
has parent organization: PubGene
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NLM ;
European Union FP7 ;
Research Council of Norway ;
Innovation Norway |
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Copyrighted |
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OMICS_01179 |
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SCR_005323 |
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2026-08-01 12:02:50 |
6 |
Nowomics
Resource Report
Resource Website
1+ mentions
|
Nowomics (RRID:SCR_013766)
|
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software resource
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A web application that allows users to track new biomedical papers from the PubMed database. Users can search for articles concerning genes, species, disease, techniques, and other related topics and create a personalized Newsfeed related to bookmarked papers. New articles are also displayed in Newsfeed format.
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web application, research, PubMed, articles
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uses: PubMed
uses: Mendeley
uses: Entrez Gene
uses: HGNC
uses: MeSH
uses: HomoloGene
is listed by: Connected Researchers
is related to: Connected Researchers
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free, public |
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SCR_013766 |
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2026-08-01 12:04:53 |
1 |
Debian
Resource Report
Resource Website
50+ mentions
|
Debian (RRID:SCR_006638)
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Debian
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software resource, software repository, data or information resource, database, source code
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Debian is Linux distribution composed of free and open source software, developed by community supported Debian Project, which was established by Ian Murdock on August 16, 1993.Debian comes with over 59000 packages (precompiled software that is bundled up in nice format for easy installation on your machine), package manager (APT), and other utilities that make it possible to manage thousands of packages on thousands of computers as easily as installing single application.
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operating system, software package, FASEB list
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lists: GUARDD
lists: FACS
lists: SNAVI
lists: Fusion Analyser
lists: GEOquery
lists: MIMOSA
lists: RNAcontext
lists: AffyRNADegradation
lists: Patchwork
lists: GraBCas
lists: GENIE3
lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks
lists: Megraft
lists: PeptideProphet
lists: VARiD
lists: Flicker
lists: ARACHNE
lists: Quant
lists: riboPicker
lists: cn.FARMS
lists: ProteinProphet
lists: dbSTS
lists: flowPeaks
lists: SODOCK
lists: PEPPER
lists: POPBAM
lists: Micro-Analyzer
lists: MuTect
lists: Mfuzz
lists: PGS
lists: TAPyR
lists: ContEst
lists: FPSAC
lists: FlipFlop
lists: SRMA
lists: Pindel
lists: PhenoFam
lists: DSRC
lists: SOAP
lists: TriageTools
lists: StringTie
lists: SplitSeek
lists: BLASR
lists: Bowtie
lists: Barrnap
lists: MUSCLE
lists: GimmeMotifs
lists: massiR
lists: CUDA-EC
lists: Illuminator
lists: SplicePlot
lists: SLOPE
lists: PARalyzer
lists: VAAL
lists: BreakSeq
lists: ProGlycProt
lists: OmicsOffice for NGS SeqSolve
lists: TileQC
lists: NGSUtils
lists: QUAST
lists: GenomicTools
lists: piCALL
lists: SNPchip
lists: TALLYMER
lists: SABER
lists: wateRmelon
lists: QualiMap
lists: BFCounter
lists: ADMIXTURE
lists: OLIN
lists: DEXUS
lists: limmaGUI
lists: KAnalyze
lists: oneChannelGUI
lists: BeadDataPackR
lists: affylmGUI
lists: SAMBLASTER
lists: PyLOH
lists: fRMA
lists: CYCLE
lists: FARMS
lists: MACAT
lists: GlyProt
lists: YinOYang
lists: Sequedex
lists: DictyOGlyc
lists: ToppCluster
lists: Biocatalogue - The Life Science Web Services Registry
lists: ProbRNA
lists: HAPLOPAINTER
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: GERMLINE
lists: FACTA+.
lists: CisGenome
lists: asSeq
lists: unifiedWMWqPCR
lists: HOMOZYGOSITYMAPPER
lists: Prediction of Amyloid Structure Aggregation
lists: InterMine
lists: TANGO
lists: CQN
lists: MEME Suite - Motif-based sequence analysis tools
lists: pRESTO
lists: S-MART
lists: PhosphoSitePlus: Protein Modification Site
lists: myExperiment
lists: DINDEL
lists: Skylign
lists: PEDIGRAPH
lists: ADaCGH2
lists: CCAT
lists: AnimalTFDB
lists: TEMP
lists: CanSNPer
lists: Candida Genome Database
lists: SamSPECTRAL
lists: InteroPorc
lists: MetaBase
lists: Pecan
lists: cisRED: cis-regulatory element
lists: AffyPipe
lists: SHORTY
lists: BISC
lists: Pathway Commons
lists: Cake
lists: SNVer
lists: WebGeSTer DB
lists: FlyFactorSurvey
lists: ASPGD
lists: TcoF
lists: cpnDB: A Chaperonin Database
lists: ZOOM
lists: CAMERA - Collection of annotation related methods for mass spectrometry data
lists: BEETL-fastq
lists: NGSrich
lists: ShotGun
lists: Iterative Signature Algorithm
lists: SBARS
lists: SNPAAMapper
lists: Autophagy Database
lists: RUbioSeq
lists: COSMIC - Catalogue Of Somatic Mutations In Cancer
lists: EchoBASE
lists: QualitySNPng
lists: Pathview
lists: pymzML
lists: RopeBWT2
lists: ExomeDepth
lists: NetPathMiner
lists: leeHom
lists: PurBayes
lists: libCSAM
lists: SuperPred: Drug classification and target prediction
lists: HGNC
lists: Coding Potential Calculator
lists: T3DB
lists: CPTRA
lists: BioNumbers
lists: GATE
lists: ProRata
lists: GreenPhylDB
lists: BREAKDANCER
lists: GeneFisher
lists: tweeDEseq
lists: HYDEN
lists: Eukaryotic Linear Motif
lists: Primer3Plus
lists: MethylAid
lists: Triplex
lists: Distant Regulatory Elements
lists: hot scan
lists: MFEprimer
lists: Proteome Analyst Specialized Subcellular Localization Server
lists: mrsFAST
lists: BioJS
lists: FastSNP
lists: Gene Set Enrichment Analysis
lists: Pipeliner
lists: ms lims
lists: GenePattern
lists: rBiopaxParser
lists: QDNAseq
lists: MutDB
lists: Piano
lists: NovelSeq
lists: MAGE-TAB
lists: Database of Interacting Proteins (DIP)
lists: Weighted Gene Co-expression Network Analysis
lists: Blood Group Antigen Gene Mutation Database
lists: drFAST
lists: pairheatmap
lists: MiST - Microbial Signal Transduction database
lists: AltAnalyze - Alternative Splicing Analysis Tool
lists: SplicingCompass
lists: deFuse
lists: Assembly Based ReAligner
lists: ggbio
lists: miR-PREFeR
lists: ALDEx2
lists: HTqPCR
lists: NanoStringNorm
lists: T-profiler
lists: Snakemake
lists: jmzTab
lists: MIPgen
lists: Bpipe
lists: PoPoolation
lists: L-Measure
lists: MultiPhen
lists: PheWAS R Package
lists: InsertionMapper
lists: Quantitative Enrichment of Sequence Tags
lists: INMEX
lists: Segway - a way to segment the genome
lists: SeWeR - SEquence analysis using WEb Resources
lists: TagDust
lists: BSRD
lists: DER Finder
lists: Stem Cell Discovery Engine
lists: Kdetrees
lists: Tree and reticulogram REConstruction
lists: BioPig
lists: NCBI BioSystems Database
lists: Distributed String Mining Framework
lists: NEWT
lists: PILGRM
lists: Selectome: a Database of Positive Selection
lists: SVMerge
lists: Parseq
lists: SVseq
lists: Small Molecule Pathway Database
lists: miRNAKey
lists: DELLY
lists: Apo and Holo structures DataBase
lists: BioSample Database at EBI
lists: MetaPhyler
lists: MG-RAST
lists: SLIQ
lists: SOPRA
lists: Information Hyperlinked Over Proteins
lists: AmphoraNet
lists: SINA
lists: SSPACE
lists: Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets
lists: STING Report
lists: G-BLASTN
lists: RNA-eXpress
lists: MethPipe
lists: SoyBase
lists: Strelka2
lists: RUM
lists: SPOT - Biological prioritization after a SNP association study
lists: VFS
lists: PHAge Search Tool
lists: MLTreeMap
lists: SEECER
lists: GeneTalk
lists: ERANGE
lists: rQuant
lists: NCBO Annotator
lists: ShoRAH
lists: Yabi
lists: ORMAN
lists: FusionMap
lists: CoPub
lists: Scripture
lists: SolexaQA
lists: Kismeth
lists: EMAGE Gene Expression Database
lists: SAMStat
lists: Knime4Bio
lists: Bis-SNP
lists: GobyWeb
lists: Jellyfish
lists: PRINSEQ
lists: PASS
lists: GSNAP
lists: SOAPaligner/soap2
lists: MethylViewer
lists: READSCAN
lists: DistMap
lists: MicrobesOnline
lists: mrFAST
lists: FLASH
lists: TIGRFAMS
lists: TMA Navigator
lists: Bambino
lists: TreQ
lists: SeqMap
lists: SeqTrace
lists: TRANSFAC
lists: GoFish
lists: MethylomeDB
lists: CLIPZ
lists: SerbGO
lists: ToppGene Suite
lists: ngsTools
lists: PePr
lists: DMRforPairs
lists: CharProtDB: Characterized Protein Database
lists: Expression Profiler
lists: SNPsandGO
lists: GoSurfer
lists: WEGO - Web Gene Ontology Annotation Plot
lists: SOURCE
lists: Stampy
lists: DiseaseMeth
lists: BLESS
lists: GraphProt
lists: GoPubMed
lists: ccPDB - Compilation and Creation of datasets from PDB
lists: Europe PubMed Central
lists: Dr.VIS - Human Disease-Related Viral Integration Sites
lists: DOMMINO - Database Of MacroMolecular INteractiOns
lists: DBETH - Database for Bacterial ExoToxins for Humans
lists: VirHostNet: Virus-Host Network
lists: GWASdb
lists: HFV Database
lists: HotRegion - A Database of Cooperative Hotspots
lists: eQuilibrator
lists: FunTree
lists: Cascade
lists: 959 Nematode Genomes
lists: ICEberg
lists: IndelFR - Indel Flanking Region Database
lists: IDEAL - Intrinsically Disordered proteins with Extensive Annotations and Literature
lists: ProRepeat
lists: NRG-CING
lists: InterEvol database
lists: MMMDB - Mouse Multiple tissue Metabolome DataBase
lists: Newtomics
lists: MIPModDB
lists: DistiLD - Diseases and Traits in LD
lists: Polbase
lists: UMD-BRCA1/ BRCA2 databases
lists: ScerTF
lists: VIRsiRNAdb
lists: ProPortal
lists: OGEE - Online GEne Essentiality database
lists: RecountDB
lists: PRED-GPCR
lists: RNA CoSSMos
lists: PRED-SIGNAL
lists: SNPedia
lists: SpliceDisease
lists: HMM-TM
lists: deepSNV
lists: OMPdb
lists: PRED-LIPO
lists: VICUNA
lists: Predictive Networks
lists: COEUS
lists: GeneTrail
lists: epigenomix
lists: ADGO
lists: SRAdb
lists: QCGWAS
lists: Flycircuit
lists: MouseBook
lists: Immune Epitope Database and Analysis Resource (IEDB)
lists: SitEx
lists: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
lists: MSIsensor
lists: TSSer
lists: ATRHUNTER
lists: Phytozome
lists: Decombinator
lists: ViralZone
lists: COLT-Cancer
lists: Gene Expression Database
lists: BEDTools
lists: waviCGH
lists: Pseudomonas Genome Database
lists: BIGpre
lists: MyHits
lists: CAPS Database
lists: SpliceTrap
lists: EagleView
lists: IMGT/LIGM-DB
lists: RIKEN integrated database of mammals
lists: COHCAP
lists: DARC - Database for Aligned Ribosomal Complexes
lists: canSAR
lists: GWAMA
lists: AutismKB
lists: zfishbook
lists: PomBase
lists: Myrna
lists: PLEXdb - Plant Expression Database
lists: RamiGO
lists: PhenoM - Phenomics of yeast Mutants
lists: IMGT/GENE-DB
lists: HIstome: The Histone Infobase
lists: SCOP: Structural Classification of Proteins
lists: CuticleDB
lists: agriGO
lists: Expression Database in 4D
lists: ESEfinder 3.0
lists: TriTrypDB
lists: VIDA
lists: Database of Arabidopsis Transcription Factors
lists: Atlas of Genetics and Cytogenetics in Oncology and Haematology
lists: AgBase
lists: Hyper Cell Line Database
lists: Midbody, Centrosome and Kinetochore
lists: Chromosome 7 Annotation Project
lists: MfunGD - MIPS Mouse Functional Genome Database
lists: Taipan
lists: VISTA Browser
lists: T1DBase
lists: lobSTR
lists: VISTA Enhancer Browser
lists: MEROPS
lists: Gene Array Analyzer
lists: Network Analysis, Visualization and Graphing TORonto
lists: Candidate Genes to Inherited Diseases
lists: Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD)
lists: eTBlast
lists: hiPathDB - human integrated Pathway DB with facile visualization
lists: MuSiC
lists: miRNEST
lists: QuasiRecomb
lists: neXtProt
lists: DNAtraffic
lists: BeeBase
lists: NetOGlyc
lists: GenoTan
lists: GMAP
lists: LegumeIP
lists: SeqBuster
lists: elastix
lists: iMir
lists: WEBLOGO
lists: MaCH-Admix
lists: Pathema
lists: SNPinfo Web Server
lists: MOSCPHASER
lists: NEBcutter
lists: Atlas2
lists: FGDP
lists: Velvet
lists: HomSI
lists: MicroSNiPer
lists: MIRA
lists: ALLPATHS-LG
lists: CUPSAT
lists: SVDetect
lists: omiRas
lists: CopySeq
lists: MutSig
lists: HapFABIA
lists: DIANA-LncBase
lists: MutationTaster
lists: HMCan
lists: Geneious
lists: kmer-SVM
lists: SICER
lists: ZINBA
lists: Pedimap
lists: MAnorm
lists: PlantTFcat
lists: MethMarker
lists: NPS
lists: PeakRanger
lists: SEAL
lists: OligoArray
lists: PSAR-Align
lists: CEQer
lists: CloudBurst
lists: nucleR
lists: RACE
lists: Asterias
lists: PatMaN
lists: RobiNA
lists: LitInspector
lists: Btrim
lists: ArrayAnalysis.org
lists: CANGS
lists: GeneStitch
lists: ProDesign
lists: JiffyNet
lists: AlienTrimmer
lists: GenoREAD
lists: HSLPred
lists: CancerResource
lists: FABIA
lists: PlnTFDB
lists: easyRNASeq
lists: OBI-Warp
lists: PREDDIMER
lists: ECHO
lists: ICPL ESIQuant
lists: PRIDE Converter 2
lists: SlideSort-BPR
lists: COBRApy
lists: MFPaQ
lists: TopHat-Fusion
lists: miRPlant
lists: SNP ratio test
lists: compomics-utilities
lists: PLEK
lists: multiplierz
lists: Allim
lists: ISDTool
lists: NetCoffee
lists: MToolBox
lists: Scalpel
lists: DNaseR
lists: LocalAli
lists: NAIL
lists: iceLogo
lists: GPU-Meta-Storms
lists: AMS
lists: rqubic
lists: ANNOVAR
lists: A5-miseq
lists: PhosphoSiteAnalyzer
lists: Cell motility
lists: MethylCoder
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lists: TDT-PC
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lists: SynTView
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lists: TRAL
lists: SPIKE
lists: Transporter Classification Database
lists: TransmiR
lists: TASSEL
lists: SYFPEITHI: A Database for MHC Ligands and Peptide Motifs
lists: FLUX CAPACITOR
lists: TB PORTALS
lists: TAndem Splice Site DataBase
lists: VirusHunter
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lists: TMAJ
lists: ApiDB ToxoDB
lists: tradeSeq
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lists: Trowel
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lists: WSsas - Web Service for the SAS tool
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lists: VaDiR
lists: Yeast Search for Transcriptional Regulators And Consensus Tracking
lists: Vector Alignment Search Tool
lists: Zebrafish Information Network (ZFIN)
lists: YASARA
lists: Vmatch
lists: VFDB - Virulence Factors of Bacterial Pathogens
lists: Xenbase
lists: Visualization and Analysis of Networks containing Experimental Data (VANTED)
lists: VisSR
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lists: DNA DataBank of Japan (DDBJ)
lists: FASTX-Toolkit
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lists: ABySS
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lists: Alien-hunter
lists: ALTree
lists: Integrative Genomics Viewer
lists: RDKit: Open-Source Cheminformatics Software
lists: Acacia
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lists: Anfo
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lists: ART
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lists: BEAGLE
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lists: BOXSHADE 3.21
lists: Cassiopee
lists: Cdbfasta
lists: Circlator
lists: Clearcut
lists: Clonalframe
lists: ClonalOrigin
lists: Computational Morphometry Toolkit
lists: Concavity
lists: CRAC
lists: cwltool
lists: Daligner
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lists: DNACLUST
lists: DWGSIM
lists: Eigensoft
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lists: IDBA-UD
lists: ImageJ
lists: Infernal
lists: PyMOL
lists: GenABEL
lists: Biopython
lists: QuorUM
lists: Prodigal
lists: QuteMol
lists: PRESTO: Genetic Association Analysis Software
lists: Probalign
lists: Computational Structural Biology Toolbox
lists: LEfSe
lists: Happy
lists: jModelTest
lists: KMC
lists: LAMARC
lists: libRoadRunner
lists: LoFreq
lists: MetaPhlAn
lists: MicrobiomeUtilities
lists: MINIMAC
lists: MIPE
lists: mothur
lists: Mugsy
lists: GNU Octave
lists: Oncofuse
lists: PBSIM
lists: PerlPrimer
lists: PHAST
lists: Picard
lists: PLINK
lists: ADEGENET
lists: phytools
lists: PSCBS
lists: R/QTL
lists: SAM
lists: vegan
lists: RepeatMasker
lists: Scythe
lists: SEER
lists: Seq-Gen
lists: SMRT-Analysis
lists: Scalable Nucleotide Alignment Program
lists: SPAdes
lists: TraceTuner
lists: Transterm
lists: TreeView
lists: Viewmol
lists: Vascular Modeling Toolkit
lists: Aegean
lists: amide
lists: Anndata
lists: ANTS - Advanced Normalization ToolS
lists: ARB project
lists: ArtificialFastqGenerator
lists: Arvados
lists: Bandage
lists: Berkeley Advanced Reconstruction Toolbox
lists: BBmap
lists: Eagle
lists: Bio-Formats
lists: BioImage Suite
lists: BioJava Project
lists: BioSig: An Imaging Bioinformatics System for Phenotypic Analysis
lists: BRAKER
lists: Bustools
lists: Computerized Anatomical Reconstruction and Editing Toolkit
lists: CellProfiler Image Analysis Software
lists: ChIPSeq Peak Finder
lists: ChromHMM
lists: Cluster
lists: Cytoscape
lists: Dazzler
lists: DCMTK: DICOM Toolkit
lists: DeepNano
lists: dinifti
lists: DICOMscope
lists: Dipy
lists: Drop-seq tools
lists: Electronic Cell Project
lists: Ecopcr
lists: Edtsurf
lists: DOMAINATRIX
lists: DOMALIGN
lists: Embassy-domsearch
lists: E-mem
lists: e-PCR
lists: Falcon
lists: Fastaq
lists: Fastqtl
lists: Ffindex
lists: FreeSurfer
lists: FSA
lists: FSL
lists: Galaxy
lists: GARLI
lists: Garlic
lists: IndelGenotyper
lists: gdpc
lists: Gemma
lists: GenomeTools
lists: Gentle
lists: GERP
lists: Gff2aplot
lists: gffread
lists: GraPhlAn
lists: Gubbins
lists: Harvest-tools
lists: HiLive
lists: Hinge
lists: ImageMagick
lists: ImageVis3D
lists: Indelible
lists: InVesalius 3
lists: IQ TREE
lists: ITK-SNAP
lists: JBrowse
lists: JIST: Java Image Science Toolkit
lists: Fastahack
lists: Lipsia
lists: LUMPY
lists: Mash
lists: Mesquite
lists: MetaBAT
lists: MOSAIK
lists: MRtrix
lists: Human Disease Ontology
lists: NanoFilt
lists: Object-Oriented Development Interface for NMR
lists: OpenElectrophy
lists: OpenMEEG
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lists: OptiType
lists: PARASAIL
lists: ParaView
lists: PhyloPhlAn
lists: Phyutility
lists: Porechop
lists: PSIPRED
lists: PsychoPy
lists: Pychopper
lists: pydicom
lists: PySurfer
lists: MNE software
lists: pbcore
lists: pyxnat
lists: QIIME2
lists: RAxML Next Generation
lists: ShortRead
lists: Phangorn
lists: psych
lists: VennDiagram
lists: Recognition of Errors in Assemblies using Paired Reads
lists: RELION
lists: RStudio
lists: Salmon
lists: Scoary
lists: University of Zurich SCRM - Cell-and Tissue Biobank
lists: Short Read Sequence Typing for Bacterial Pathogens
lists: Umap
lists: VoxBo
lists: WTDBG
lists: XNAT - The Extensible Neuroimaging Archive Toolkit
lists: ABACAS
lists: AceDB
lists: LINKAGE
lists: Protein Information Resource
lists: PredictNLS
lists: tRNAscan-SE
lists: RSEM
lists: Aeskulap
lists: alleleCount
lists: assembly-stats
lists: Atropos
lists: Assemblytics
lists: Augur
lists: AxParafit
lists: Aghermann
lists: bambamc
lists: AxPcoords
lists: bamkit
lists: BAli-Phy
lists: Auspice
lists: BBHash
lists: BCALM 2
lists: Bibus
lists: BioMAJ
lists: BioCocoa
lists: Biber
lists: BioImageXD
lists: caftools
lists: BOLT-LMM
lists: CamiTK
lists: CLI for BioMAJ
lists: CAMP
lists: CAT and BAT
lists: CHIME
lists: CDK
lists: ChromImpute
lists: CiftiLib
lists: conda-package-handling
lists: CARD
lists: CONTRAfold
lists: CodonW
lists: Change-O
lists: C Thread Pool
lists: Chemtool
lists: covtobed
lists: CTK
lists: CTDopts
lists: CTDConverter
lists: Conquest DICOM
lists: CTSim
lists: Dicom3tools
lists: Dendroscope3
lists: cyvcf2
lists: Deepbinner
lists: EDFlib
lists: EDFbrowser
lists: dicompyler
lists: EMMAX
lists: DEXTRACTOR
lists: DNApi
lists: Epigrass
lists: ELPH
lists: ExaBayes
lists: EMPeror
lists: FreeImage
lists: Fast5 Library
lists: Entangle
lists: FFP
lists: GenomeTester4
lists: Filtlong
lists: EMBOSS explorer
lists: GfaPy
lists: GATB
lists: GCLib
lists: EpiFire
lists: HTSJDK
lists: GDCM
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lists: GraphMap2
lists: foreign
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lists: IDeFIX
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lists: iVar
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lists: Intake
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lists: JabRef
lists: Lambda
lists: Kaptive
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lists: kineticsTools
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lists: Bio-EUtilities
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lists: kempbasu
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lists: IVA
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lists: Bio-PrimerDesigner
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lists: Java NeXML libraries and tools
lists: libmaus2
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lists: MIA
lists: libics
lists: FAST Analysis of Sequences Toolbox
lists: Libchipcard
lists: TaxonomyTree
lists: Core Wrapper
lists: Lighter
lists: SSW Library
lists: libqc++
lists: SeqLib
lists: tabixpp
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lists: limereg
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lists: metaBIT
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lists: VIGRA
lists: MCL
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lists: MindTheGap
lists: Logol
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lists: mmtf-python
lists: Miniasm
lists: Tab2MAGE
lists: MView
lists: LTRsift
lists: Molekel
lists: mirtop
lists: Maude
lists: MicrobeGPS
lists: mPSQed
lists: mPTP
lists: SMILE
lists: Entrez Direct
lists: NW-align
lists: NanoSV
lists: Mustang
lists: Nanocall
lists: Ngila
lists: MRtrix3
lists: NORSp
lists: Murasaki
lists: Nextflow
lists: NCBI accession download script
lists: omegaMap
lists: NJplot
lists: NanoLyse
lists: OpenCFU
lists: NORSnet
lists: OBITools
lists: NeoBio
lists: OptimiR
lists: PartitionFinder
lists: OpenSurgSim
lists: NanoPlot
lists: NextSV
lists: OpenEMR
lists: Orthanc
lists: PAIPline
lists: Odil
lists: PHYLOViZ
lists: PlasmidSeeker
lists: PDB2PQR
lists: OpenIGTLink
lists: Parsnp
lists: parallel-fastq-dump
lists: ParsInsert
lists: PiGx-RNAseq
lists: PfTools
lists: PlasmidID
lists: Phyx
lists: pipasic
lists: pngquant
lists: pbcopper
lists: Patristic
lists: PLIP
lists: Placnet
lists: PhySamp
lists: pufferfish
lists: PRINSEQ
lists: PLAST
lists: PCMA
lists: picopore
lists: POA
lists: PROFisis
lists: ProDA
lists: PRANK
lists: Cooler
lists: pyepl
lists: pssh2
lists: Plastimatch
lists: pynast
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lists: python-airr
lists: Populations
lists: pyFAI
lists: python-biom-format
lists: pyranges
lists: purple
lists: PyCogent
lists: qtlreaper
lists: qcumber
lists: python-bx
lists: pyomo
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lists: Proteinortho
lists: DendroPy
lists: qtltools
lists: pyscanfcs
lists: rambo-k
lists: qcat
lists: rasmol
lists: rampler
lists: raccoon
lists: ragout
lists: rapmap
lists: quicktree
lists: Raster3D
lists: AnnotationHub
lists: Rate4Site
lists: altcdfenvs
lists: annotate
lists: biomformat
lists: Biobase
lists: affyio
lists: bridgedbr
lists: BiocGenerics
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lists: genefilter
lists: CNEr
lists: bsgenome
lists: geneplotter
lists: ctc
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lists: go.db
lists: genomeinfodb
lists: hypergraph
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lists: mergeomics
lists: impute
lists: makecdfenv
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lists: qusage
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lists: metagenomeseq
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lists: pwmenrich
lists: rbgl
lists: htsfilter
lists: nanostringqcpro
lists: rgsepd
lists: rcpi
lists: pcaMethods
lists: adephylo
lists: rsamtools
lists: savr
lists: tfbstools
lists: xvector
lists: ade4
lists: biwt
lists: beeswarm
lists: cmprsk
lists: alakazam
lists: bio3d
lists: Epi
lists: BoolNet
lists: DT
lists: DoseFinding
lists: itertools
lists: fitdistrplus
lists: fitbitscraper
lists: dynamicTreeCut
lists: epibasix
lists: distory
lists: forecast
lists: incidence
lists: hms
lists: nmf
lists: mediana
lists: genetics
lists: lexrankr
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lists: optimalcutpoints
lists: proc
lists: pcapp
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lists: rann
lists: phylobase
lists: psyphy
lists: psychotree
lists: rnexml
lists: rook
lists: rpact
lists: tigger
lists: robustrankaggreg
lists: qqman
lists: rwave
lists: shazam
lists: rsvd
lists: rncl
lists: rotl
lists: rniftilib
lists: sjplot
lists: wavethresh
lists: stringi
lists: snowfall
lists: waveslim
lists: surveillance
lists: tsne
lists: webgestaltr
lists: resfinder
lists: readucks
lists: recan
lists: roadtrips
lists: readseq
lists: roguenarok
lists: rtax
lists: rgfa
lists: ruby-bio
lists: runcircos-gui
lists: sailfish
lists: samclip
lists: saint
lists: sambamba
lists: seqmagick
lists: sbmltoolbox
lists: seq-seq-pan
lists: seqsero
lists: seqwish
lists: shapeit4
lists: sepp
lists: crb-blast
lists: sigma-align
lists: sibsim4
lists: signalalign
lists: sibelia
lists: shiny-server
lists: sistr
lists: skesa
lists: sigviewer
lists: snpomatic
lists: spaced
lists: sitplus
lists: sofa-apps
lists: sra-toolkit
lists: strap-base
lists: sparta
lists: swarm
lists: sourmash
lists: surankco
lists: streamlit
lists: tab2mage
lists: sumaclust
lists: sweed
lists: tacg
lists: zAlign
lists: tiddit
lists: Workrave
lists: sprai
lists: VolPack
lists: XMedCon
lists: Yanosim
lists: Yanagiba
lists: libswiss-perl
lists: yaha
lists: VisIt
lists: VelvetOptimiser
lists: variation graph
lists: vcfanno
lists: VarMatch
lists: VirulenceFinder
lists: CCS
lists: VADR
lists: VARNA
lists: VMD
lists: FISH
lists: trace2dbEST
lists: TREE-PUZZLE
lists: umis
lists: Trinculo
lists: toil
lists: TRANSIT
lists: toppred
lists: Unicycler
lists: TM-align
lists: Tn-seq explorer
lists: Tombo
lists: TopHat-Recondition
is related to: FreeContact
is parent organization of: neurodebian
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Free, Freely available |
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nlx_151598 |
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SCR_006638 |
Debian - The universal operating system, Debian GNU/Linux |
2026-08-02 09:04:43 |
50 |
WebGestalt: WEB-based GEne SeT AnaLysis Toolkit
Resource Report
Resource Website
1000+ mentions
|
WebGestalt: WEB-based GEne SeT AnaLysis Toolkit (RRID:SCR_006786)
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WebGestalt
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data access protocol, web application, web service, software resource
|
Web based gene set analysis toolkit designed for functional genomic, proteomic, and large-scale genetic studies from which large number of gene lists (e.g. differentially expressed gene sets, co-expressed gene sets etc) are continuously generated. WebGestalt incorporates information from different public resources and provides a way for biologists to make sense out of gene lists. This version of WebGestalt supports eight organisms, including human, mouse, rat, worm, fly, yeast, dog, and zebrafish.
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proteomic, gene expression, genome wide association study, statistical analysis, functional genomics, protein protein interaction, pathway, regulatory module, analysis toolkit, web application
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is listed by: Gene Ontology Tools
is listed by: OMICtools
is related to: Gene Ontology
is related to: Entrez Gene
is related to: KEGG
is related to: Pathway Commons
is related to: WikiPathways
is related to: PheWAS Catalog
is related to: webgestaltr
has parent organization: Vanderbilt University; Tennessee; USA
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NIAAA U01 AA016662;
NIAAA U01 AA013512;
NIDA P01 DA015027;
NIMH P50 MH078028;
NIMH P50 MH096972;
NCI U24 CA159988;
NIGMS R01 GM088822 |
PMID:24233776
PMID:15980575
PMID:14975175 |
Free, Freely available |
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OMICS_02222, nif-0000-30622 |
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http://bioinfo.vanderbilt.edu/webgestalt/ |
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SCR_006786 |
GOTM, Gene Ontology Tree Machine, WebGestalt2, WEB-based GEne SeT AnaLysis Toolkit, WebGestalt |
2026-08-02 09:04:58 |
2760 |
Array Information Library Universal Navigator
Resource Report
Resource Website
1+ mentions
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Array Information Library Universal Navigator (RRID:SCR_006967)
|
AILUN
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resource, production service resource, data or information resource, database, service resource, data analysis service, analysis service resource
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Re-annotated gene expression / proteomics data from GEO by relating all probe IDs to Entrez Gene IDs once every three months, enabling you to find data from GEO, and compare them from different platforms and species. Platform Annotations adds the latest annotations to any uploaded probe / gene ID list file. Platform Comparison compares any two platforms to find corresponding probes mapping to the same gene. Cross-species mapping maps platform annotations to other species. Gene Search finds deposited platforms and samples in GEO that contain a list of genes. GPL ID Search finds the GPL ID (GEO platform ID) for your array. You can also download the latest annotations files for all arrays and their comprehensive universal gene identifier table, which relates all types of gene / protein / clone identifiers to Entrez Gene IDs for all species. Note: The database was last updated on 4/30/2011. They have successfully mapped 54932732 individual probes from 385099 GEO samples measuring 3519 GEO platforms across 217 species.
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gene expression, gene, array, clone, probe, protein, proteomic, annotation, analytical service, probe id, comparison, microarray, probe sequence, gene identifier, annotation file, web service
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is related to: Gene Expression Omnibus
is related to: Entrez Gene
has parent organization: Stanford University School of Medicine; California; USA
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Lucile Packard Foundation for Childrens Health ;
Howard Hughes Medical Institute ;
Pharmaceutical Research and Manufacturers of America Foundation ;
NLM K22 LM008261;
NIDDK R01GM079719 |
PMID:17971777 |
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nif-0000-33004 |
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SCR_006967 |
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2026-08-02 09:05:00 |
5 |
bio.tools
Resource Report
Resource Website
10+ mentions
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bio.tools (RRID:SCR_014695)
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catalog, software resource, software repository, data or information resource, database
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Community registry of software tools and data resources for life sciences. Tools and data services registry as community effort to document bioinformatics resources. Registry of software and databases, facilitating researchers from across spectrum of biological and biomedical science. When adding tools to registry, information including URL, contact information, resource function, field its relevant in, and its primary publication are required. Development is supported by ELIXIR - the European Infrastructure for Biological Information.
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Registry, software registry, biological tool, data services registry, services discovery portal, bio.tools
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lists: FACS
lists: Fusion Analyser
lists: AffyRNADegradation
lists: GUARDD
lists: GEOquery
lists: RNAcontext
lists: Patchwork
lists: SODOCK
lists: MIMOSA
lists: GraBCas
lists: SNAVI
lists: GENIE3
lists: Megraft
lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks
lists: PeptideProphet
lists: Quant
lists: VARiD
lists: ProteinProphet
lists: Flicker
lists: ARACHNE
lists: Micro-Analyzer
lists: riboPicker
lists: dbSTS
lists: POPBAM
lists: flowPeaks
lists: cn.FARMS
lists: Sequence Search and Alignment by Hashing Algorithm
lists: SAMBLASTER
lists: Pindel
lists: Mfuzz
lists: TAPyR
lists: ContEst
lists: PGS
lists: PEPPER
lists: FPSAC
lists: FlipFlop
lists: ProGlycProt
lists: MuTect
lists: TriageTools
lists: BLASR
lists: DSRC
lists: SRMA
lists: Bowtie
lists: StringTie
lists: PhenoFam
lists: SOAP
lists: SplitSeek
lists: MUSCLE
lists: SplicePlot
lists: Illuminator
lists: GimmeMotifs
lists: Skylign
lists: BreakSeq
lists: Barrnap
lists: SLOPE
lists: CUDA-EC
lists: QualiMap
lists: massiR
lists: OmicsOffice for NGS SeqSolve
lists: QUAST
lists: GenomicTools
lists: NGSUtils
lists: TileQC
lists: Sequedex
lists: PARalyzer
lists: BFCounter
lists: TALLYMER
lists: SNPchip
lists: VAAL
lists: ProbRNA
lists: ADMIXTURE
lists: SABER
lists: piCALL
lists: CYCLE
lists: limmaGUI
lists: DEXUS
lists: KAnalyze
lists: BeadDataPackR
lists: wateRmelon
lists: NGSrich
lists: OLIN
lists: fRMA
lists: MACAT
lists: affylmGUI
lists: DictyOGlyc
lists: GlyProt
lists: CisGenome
lists: ToppCluster
lists: AnimalTFDB
lists: oneChannelGUI
lists: YinOYang
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: asSeq
lists: FARMS
lists: GERMLINE
lists: unifiedWMWqPCR
lists: HAPLOPAINTER
lists: Biocatalogue - The Life Science Web Services Registry
lists: HOMOZYGOSITYMAPPER
lists: MetaBase
lists: PyLOH
lists: InterMine
lists: myExperiment
lists: pRESTO
lists: TANGO
lists: Prediction of Amyloid Structure Aggregation
lists: PhosphoSitePlus: Protein Modification Site
lists: CCAT
lists: BREAKDANCER
lists: FACTA+.
lists: PEDIGRAPH
lists: CQN
lists: CanSNPer
lists: SamSPECTRAL
lists: TEMP
lists: MEME Suite - Motif-based sequence analysis tools
lists: SNPAAMapper
lists: Pecan
lists: InteroPorc
lists: AffyPipe
lists: ADaCGH2
lists: DINDEL
lists: ASPGD
lists: Candida Genome Database
lists: BISC
lists: PurBayes
lists: SNVer
lists: Cake
lists: S-MART
lists: SHORTY
lists: Pathway Commons
lists: TcoF
lists: BEETL-fastq
lists: SBARS
lists: cpnDB: A Chaperonin Database
lists: cisRED: cis-regulatory element
lists: FlyFactorSurvey
lists: pymzML
lists: EchoBASE
lists: Blood Group Antigen Gene Mutation Database
lists: WebGeSTer DB
lists: RUbioSeq
lists: COSMIC - Catalogue Of Somatic Mutations In Cancer
lists: MethylAid
lists: ExomeDepth
lists: ZOOM
lists: Iterative Signature Algorithm
lists: ShotGun
lists: Pathview
lists: T3DB
lists: Autophagy Database
lists: rBiopaxParser
lists: QualitySNPng
lists: CAMERA - Collection of annotation related methods for mass spectrometry data
lists: libCSAM
lists: RopeBWT2
lists: NetPathMiner
lists: BioNumbers
lists: leeHom
lists: tweeDEseq
lists: ProRata
lists: Coding Potential Calculator
lists: CPTRA
lists: MFEprimer
lists: Distant Regulatory Elements
lists: HGNC
lists: GATE
lists: SuperPred: Drug classification and target prediction
lists: hot scan
lists: AltAnalyze - Alternative Splicing Analysis Tool
lists: Primer3Plus
lists: pairheatmap
lists: BioJS
lists: ms lims
lists: Eukaryotic Linear Motif
lists: Proteome Analyst Specialized Subcellular Localization Server
lists: HYDEN
lists: drFAST
lists: GeneFisher
lists: GreenPhylDB
lists: MiST - Microbial Signal Transduction database
lists: Pipeliner
lists: Gene Set Enrichment Analysis
lists: Piano
lists: Weighted Gene Co-expression Network Analysis
lists: FastSNP
lists: Triplex
lists: mrsFAST
lists: GenePattern
lists: NovelSeq
lists: QDNAseq
lists: MutDB
lists: SplicingCompass
lists: deFuse
lists: Database of Interacting Proteins (DIP)
lists: Assembly Based ReAligner
lists: MAGE-TAB
lists: ggbio
lists: miR-PREFeR
lists: NanoStringNorm
lists: MIPgen
lists: HTqPCR
lists: Parseq
lists: T-profiler
lists: Bpipe
lists: jmzTab
lists: L-Measure
lists: Snakemake
lists: PoPoolation
lists: MultiPhen
lists: PheWAS R Package
lists: Quantitative Enrichment of Sequence Tags
lists: ALDEx2
lists: INMEX
lists: InsertionMapper
lists: BSRD
lists: SeWeR - SEquence analysis using WEb Resources
lists: Segway - a way to segment the genome
lists: Stem Cell Discovery Engine
lists: TagDust
lists: Kdetrees
lists: Tree and reticulogram REConstruction
lists: NEWT
lists: DER Finder
lists: BioPig
lists: Selectome: a Database of Positive Selection
lists: Distributed String Mining Framework
lists: PILGRM
lists: Apo and Holo structures DataBase
lists: MLTreeMap
lists: MG-RAST
lists: miRNAKey
lists: SVseq
lists: Small Molecule Pathway Database
lists: Information Hyperlinked Over Proteins
lists: SVMerge
lists: BioSample Database at EBI
lists: MetaPhyler
lists: SOPRA
lists: NCBI BioSystems Database
lists: SLIQ
lists: G-BLASTN
lists: SSPACE
lists: AmphoraNet
lists: NCBI Structure: Cn3D
lists: DELLY
lists: RUM
lists: STING Report
lists: SoyBase
lists: SINA
lists: Strelka2
lists: RNA-eXpress
lists: Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets
lists: VFS
lists: ShoRAH
lists: READSCAN
lists: ERANGE
lists: GeneTalk
lists: ORMAN
lists: SEECER
lists: Scripture
lists: SPOT - Biological prioritization after a SNP association study
lists: NCBO Annotator
lists: CoPub
lists: SolexaQA
lists: PHAge Search Tool
lists: Knime4Bio
lists: MethPipe
lists: Bis-SNP
lists: GobyWeb
lists: EMAGE Gene Expression Database
lists: FusionMap
lists: Yabi
lists: GSNAP
lists: rQuant
lists: MethylViewer
lists: DistMap
lists: PASS
lists: mrFAST
lists: Kismeth
lists: Stampy
lists: TreQ
lists: FLASH
lists: SAMStat
lists: PRINSEQ
lists: MethylomeDB
lists: SOAPaligner/soap2
lists: TMA Navigator
lists: TRANSFAC
lists: SeqMap
lists: Bambino
lists: MicrobesOnline
lists: DMRforPairs
lists: TIGRFAMS
lists: CLIPZ
lists: SNPsandGO
lists: ToppGene Suite
lists: SeqTrace
lists: GoSurfer
lists: Jellyfish
lists: GoFish
lists: WEGO - Web Gene Ontology Annotation Plot
lists: ngsTools
lists: GraphProt
lists: SerbGO
lists: GoPubMed
lists: ccPDB - Compilation and Creation of datasets from PDB
lists: DOMMINO - Database Of MacroMolecular INteractiOns
lists: SOURCE
lists: DistiLD - Diseases and Traits in LD
lists: PePr
lists: Expression Profiler
lists: eQuilibrator
lists: DiseaseMeth
lists: Dr.VIS - Human Disease-Related Viral Integration Sites
lists: FunTree
lists: DBETH - Database for Bacterial ExoToxins for Humans
lists: BLESS
lists: GWASdb
lists: HFV Database
lists: IndelFR - Indel Flanking Region Database
lists: MIPModDB
lists: Europe PubMed Central
lists: CharProtDB: Characterized Protein Database
lists: IDEAL - Intrinsically Disordered proteins with Extensive Annotations and Literature
lists: MMMDB - Mouse Multiple tissue Metabolome DataBase
lists: ICEberg
lists: VirHostNet: Virus-Host Network
lists: Cascade
lists: Polbase
lists: VIRsiRNAdb
lists: 959 Nematode Genomes
lists: OGEE - Online GEne Essentiality database
lists: ProPortal
lists: SNPedia
lists: Newtomics
lists: HotRegion - A Database of Cooperative Hotspots
lists: SitEx
lists: ScerTF
lists: HMM-TM
lists: NRG-CING
lists: PRED-LIPO
lists: InterEvol database
lists: SpliceDisease
lists: RNA CoSSMos
lists: deepSNV
lists: PRED-GPCR
lists: RecountDB
lists: VICUNA
lists: ProRepeat
lists: MouseBook
lists: COEUS
lists: Predictive Networks
lists: PRED-SIGNAL
lists: Flycircuit
lists: COLT-Cancer
lists: ATRHUNTER
lists: GeneTrail
lists: epigenomix
lists: Pseudomonas Genome Database
lists: QCGWAS
lists: TSSer
lists: UMD-BRCA1/ BRCA2 databases
lists: PomBase
lists: Phytozome
lists: OMPdb
lists: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
lists: MSIsensor
lists: GWAMA
lists: SpliceTrap
lists: ViralZone
lists: waviCGH
lists: MyHits
lists: Decombinator
lists: CAPS Database
lists: ADGO
lists: zfishbook
lists: EagleView
lists: Gene Expression Database
lists: SRAdb
lists: BEDTools
lists: IMGT/GENE-DB
lists: RamiGO
lists: canSAR
lists: IMGT/LIGM-DB
lists: PLEXdb - Plant Expression Database
lists: COHCAP
lists: DARC - Database for Aligned Ribosomal Complexes
lists: Immune Epitope Database and Analysis Resource (IEDB)
lists: AutismKB
lists: RIKEN integrated database of mammals
lists: Myrna
lists: PhenoM - Phenomics of yeast Mutants
lists: BIGpre
lists: HIstome: The Histone Infobase
lists: TriTrypDB
lists: CuticleDB
lists: Midbody, Centrosome and Kinetochore
lists: SCOP: Structural Classification of Proteins
lists: Expression Database in 4D
lists: VIDA
lists: Database of Arabidopsis Transcription Factors
lists: Atlas of Genetics and Cytogenetics in Oncology and Haematology
lists: ESEfinder 3.0
lists: agriGO
lists: Taipan
lists: AgBase
lists: Chromosome 7 Annotation Project
lists: MEROPS
lists: T1DBase
lists: Hyper Cell Line Database
lists: GenoTan
lists: VISTA Browser
lists: lobSTR
lists: Candidate Genes to Inherited Diseases
lists: VISTA Enhancer Browser
lists: Gene Array Analyzer
lists: Network Analysis, Visualization and Graphing TORonto
lists: MuSiC
lists: MfunGD - MIPS Mouse Functional Genome Database
lists: eTBlast
lists: Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD)
lists: FGDP
lists: hiPathDB - human integrated Pathway DB with facile visualization
lists: miRNEST
lists: neXtProt
lists: NetOGlyc
lists: QuasiRecomb
lists: GMAP
lists: iMir
lists: MaCH-Admix
lists: SeqBuster
lists: LegumeIP
lists: DNAtraffic
lists: MicroSNiPer
lists: Pathema
lists: BeeBase
lists: Geneious
lists: MOSCPHASER
lists: SNPinfo Web Server
lists: elastix
lists: MIRA
lists: NEBcutter
lists: CopySeq
lists: CUPSAT
lists: Atlas2
lists: ALLPATHS-LG
lists: Velvet
lists: HomSI
lists: SVDetect
lists: omiRas
lists: HMCan
lists: HapFABIA
lists: WEBLOGO
lists: ZINBA
lists: SICER
lists: kmer-SVM
lists: MAnorm
lists: Pedimap
lists: nucleR
lists: CEQer
lists: MutSig
lists: DIANA-LncBase
lists: MethMarker
lists: PeakRanger
lists: PlnTFDB
lists: CloudBurst
lists: NPS
lists: MutationTaster
lists: ProDesign
lists: OligoArray
lists: ArrayAnalysis.org
lists: PatMaN
lists: SEAL
lists: Asterias
lists: RACE
lists: RobiNA
lists: CANGS
lists: PlantTFcat
lists: LitInspector
lists: HSLPred
lists: PSAR-Align
lists: CancerResource
lists: JiffyNet
lists: ECHO
lists: GPU-Meta-Storms
lists: GenoREAD
lists: TopHat-Fusion
lists: GeneStitch
lists: FABIA
lists: CPFP
lists: MFPaQ
lists: ICPL ESIQuant
lists: easyRNASeq
lists: PREDDIMER
lists: NetCoffee
lists: SlideSort-BPR
lists: miRPlant
lists: AlienTrimmer
lists: PRIDE Converter 2
lists: SNP ratio test
lists: compomics-utilities
lists: Allim
lists: PLEK
lists: ISDTool
lists: OBI-Warp
lists: LocalAli
lists: iceLogo
lists: multiplierz
lists: AMS
lists: NGSmethDB
lists: PoolHap
lists: DNaseR
lists: Btrim
lists: COBRApy
lists: NAIL
lists: CAZy- Carbohydrate Active Enzyme
lists: A5-miseq
lists: ANNOVAR
lists: GENSCAN
lists: PhosphoSiteAnalyzer
lists: MethylCoder
lists: featureCounts
lists: LOCAS
lists: Scalpel
lists: Cell motility
lists: Mouse Genome Database
lists: CloudAligner
lists: HeurAA
lists: GSA-SNP
lists: seqMINER
lists: PolyPhen: Polymorphism Phenotyping
lists: rqubic
lists: PlantNATsDB - Plant Natural Antisense Transcripts DataBase
lists: MitoBreak
lists: Cube-DB
lists: Death Domain database
lists: Telescoper
lists: Crossbow
lists: MToolBox
lists: GENE-counter
lists: BEADS
lists: PLAN2L
lists: INCLUSive
lists: CSAR
lists: ApiDB CryptoDB
lists: MACS
lists: NNcon
lists: KAVIAR
lists: GeneSigDB
lists: psRNATarget
lists: Composition Profiler
lists: MINAS - Metal Ions in Nucleic AcidS
lists: EGSEA
lists: Crystallography and NMR System (CNS)
lists: Morpheus
lists: IUPHAR/BPS Guide to Pharmacology
lists: RAST Server
lists: ProteomicsDB
lists: SPEX2
lists: LTR_Finder
lists: SCRATCH
lists: DSAP
lists: PALEOMIX
lists: Buccaneer
lists: QuantiSNP
lists: ProtTest
lists: MultiQC
lists: GeneWise
lists: DISEASES
lists: Off-Spotter
lists: oligo
lists: 3D-footprint
lists: SC3
lists: MS-GF+
lists: TISSUES
lists: TFBS
lists: CHiCAGO
lists: Poretools
lists: Membrane Protein Explorer
lists: FATCAT
lists: Bio-tradis
lists: ALTER
lists: HISAT2
lists: MetaMapR
lists: PhyD3
lists: Exonerate
lists: primers4clades
lists: Fastml
lists: Bamtools
lists: Genesis
lists: DISULFIND
lists: EnrichmentMap
lists: LoRDEC
lists: mentha
lists: IDEPI - IDentify EPItopes
lists: Oufti
lists: FluxModeCalculator
lists: eXpression2Kinases
lists: SMAGEXP
lists: ProCon - PROteomics CONversion
lists: Lifebit Deploit
lists: TRANSIT
lists: Splicing Express
lists: Microscopy Image Browser
lists: SARTools
lists: SPICE
lists: DINIES
lists: OmicsNet
lists: ngsRelate
lists: clusterProfiler
lists: NetworkAnalyst
lists: FRETBursts
lists: Thunder STORM
lists: ANOCVA
lists: ConsensusClusterPlus
lists: CIBERSORT
lists: CCTOP
lists: scran
lists: Rsubread
lists: Heatmapper
lists: BinPacker
lists: Subread
lists: UMI-tools
lists: Goseq
lists: PRSice
lists: ScaffMatch
lists: EMBOSSMatcher
lists: JAMM
lists: CentroidFold
lists: Gigwa
lists: FastProject
lists: GeSeq
lists: ComplexHeatmap
lists: PatchDock
lists: Proovread
lists: trimAl
lists: ExPASy ABCD database
lists: shinyGEO
lists: AmoebaDB
lists: Blood Exposome Database
lists: STRUCTURE
lists: NetPhos
lists: Geneshot
lists: ProtParam Tool
lists: HiC-Pro
lists: HingeProt
lists: Mousebytes
lists: iTOL
lists: ChiCMaxima
lists: SWISS-MODEL
lists: PASTEClassifier
lists: R/qtl2
lists: FlowCal
lists: Signaling Pathways Project
lists: GPS-SUMO
lists: Roary
lists: SpydrPick
lists: ProSA-web
lists: SIGNOR
lists: MaxAlign
lists: REDIportal
lists: EpiModel
lists: Protein Interactions Calculator
lists: rVista
lists: Minimap2
lists: PrognoScan
lists: Batch Web CD-Search Tool
lists: AlgPred
lists: GOnet
lists: GalaxyWEB
lists: GalaxyRefine
lists: Annotree
lists: khmer
lists: E-CRISP
lists: Robetta
lists: D-GENIES
lists: aroma.light
lists: Clustal Omega
lists: DESeq
lists: VICMpred
lists: Ray
lists: Apollo
lists: STAMP
lists: discoSnp
lists: vcflib
lists: IgBLAST
lists: BioPerl
lists: Genome BioInformatics Research Lab - gff2ps
lists: Rainbow
lists: Predictions for Entire Proteomes
lists: Stacks
lists: Clustal W2
lists: RNAhybrid
lists: Primer3
lists: SAMtools/BCFtools
lists: EBSeq
lists: biobambam
lists: DIALIGN
lists: Unipro UGENE
lists: Bowtie 2
lists: Artemis: Genome Browser and Annotation Tool
lists: WHAM
lists: Database of Secondary Structure Assignments
lists: Minia
lists: HTSeq
lists: RAxML
lists: Sickle
lists: Segemehl
lists: Staden Package
lists: Bismark
lists: NCBI BLAST
lists: Vienna RNA
lists: GBrowse
lists: ea-utils
lists: AmpliconNoise
lists: COILS: Prediction of Coiled Coil Regions in Proteins
lists: BitSeq
lists: HilbertVis
lists: VarScan
lists: Regulatory Sequence Analysis Tools
lists: CD-HIT
lists: MACH
lists: SOAPsnp
lists: ProbCons
lists: BEAST
lists: Crux tandem mass spectrometry analysis software
lists: Pscan-ChIP
lists: BRIG
lists: tRNAscan-SE
lists: CGView
lists: Circos
lists: FreeBayes
lists: Glimmer
lists: T-Coffee
lists: Oases
lists: LIMMA
lists: cutadapt
lists: SSAKE
lists: edgeR
lists: OpenMS
lists: Flexbar
lists: SIFT
lists: Mauve
lists: Kalign
lists: RSEM
lists: TopHat
lists: DNAcopy
lists: phyloseq
lists: Trinity
lists: AMOS
lists: FastTree
lists: Cufflinks
lists: Prokka
lists: PAML
lists: CummeRbund
lists: GROMACS
lists: minet
lists: Atac
lists: Pilon
lists: GMA
lists: Nanopolish
lists: Krona
lists: SeqPrep
lists: SortMeRNA
lists: THESIAS
lists: tximport
lists: StoatyDive
lists: rCASC
lists: precrec
lists: IMGT-ONTOLOGY
lists: KAT
lists: globaltest
lists: COPASI
lists: CheckM
lists: Blobtools
lists: NiftyPET
lists: SeaView
lists: ASHLAR
lists: KisSplice
lists: metagen
lists: BUSCO
lists: BLINK
lists: bridge
lists: Fcirc
lists: becas
lists: bwtool
lists: TGS-GapCloser
lists: chimerascan
lists: GLUE
lists: mosdepth
lists: dcmqi
lists: SwiftOrtho
lists: andi
lists: metahdep
lists: HaploReg
lists: Jalview
lists: ScanITD
lists: ImaGene
lists: BioNix
lists: qrqc
lists: MeroX
lists: sleuth
lists: imDEV
lists: MiXCR
lists: mlgt
lists: SMARTdenovo
lists: casper
lists: miRDB
lists: shovill
lists: NiftyFit
lists: libmgf
lists: rbsurv
lists: HH-suite
lists: affy
lists: StatAlign
lists: quantsmooth
lists: Fiji
lists: yaqcaffy
lists: Racon
lists: h5vc
lists: seqbias
lists: tensorflow
lists: MGnify
lists: ngs.plot
lists: dyebias
lists: Eoulsan
lists: Cuffdiff
lists: bsseq
lists: VEnCode
lists: OrthoFinder
lists: genomation
lists: SymPy
lists: eTRIKS
lists: ascat
lists: Bridger
lists: GADMA
lists: lumi
lists: PIRATE
lists: Hippocampome.org
lists: HaTSPiL
lists: XL-mHG
lists: VETA
lists: mitopred
lists: ropls
lists: sabre
lists: scanpy
lists: icy
lists: plgem
lists: MethBase
lists: biobakery
lists: minfi
lists: HyPhy
lists: MyGene.info
lists: EpiEstim
lists: NanoSim
lists: fracridge
lists: TDimpute
lists: Pavian
lists: SimVascular
lists: qcmetrics
lists: Laniakea
lists: CRISPRcasIdentifier
lists: BISE
lists: ODAM
lists: MRIcron
lists: smashpp
lists: BSA4Yeast
lists: neuroelectro
lists: RepeatFiller
lists: ShinyLearner
lists: docker4seq
lists: CRISPR-ERA
lists: MAFFT
lists: RepeatScout
lists: Phenoscape
lists: PhenoMeNal
lists: multtest
lists: TransDecoder
lists: les
lists: PlotTwist
lists: CRISPR-P
lists: Telescope
lists: charm
lists: Warp
lists: skewer
lists: Human Neocortical Neurosolver
lists: ggtree
lists: Datanator
lists: genehunter-imprinting
lists: GraphClust2
lists: eisa
lists: scVelo
lists: GEMINI
lists: beadarray
lists: NGSEP
lists: ProP Server
lists: CandiMeth
lists: METAREP
lists: scater
lists: BioBERT
lists: iontree
lists: MetaP
lists: larvalign
lists: UALCAN
lists: VAPPER
lists: halSynteny
lists: EvidenceFinder
lists: bcbio-nextgen
lists: QuickNII
lists: QIIME
lists: phantompeakqualtools
lists: MCScan
lists: pepwheel
lists: PathwayMatcher
lists: vsn
lists: VisR
lists: Galaxy scater
lists: OpenWorm
lists: ffpe
lists: timecourse
lists: Metascape
lists: Bio2BEL
lists: RDXplorer
lists: ActiveDriver
lists: GENCODE
lists: CRISPRdirect
lists: GeneMarkS-T
lists: SPM
lists: Bionitio
lists: ascend
lists: TCW
lists: NanoPipe
lists: NeuroChaT
lists: pheatmap
lists: prank
lists: Online Peri-Event Time Histogram for Open Ephys
lists: kallisto
lists: ggplot2
lists: odMLtables
lists: glycomedb
lists: pickgene
lists: GigaSOM.jl
lists: pvac
lists: EHRtemporalVariability
lists: GemSIM
lists: lapmix
lists: PAFScaff
lists: refgenie
lists: biospytial
lists: EnteroBase
lists: QGIS
lists: CLIP-Explorer
lists: RatMine
lists: NMRProcFlow
lists: cn.mops
lists: SPP
lists: seq-annot
lists: PsyGeNET
lists: PASA
lists: UniCarb-DB
lists: NormqPCR
lists: PhylomeDB
lists: SnpHub
lists: ReadqPCR
lists: circlize
lists: HmtVar
lists: sim4cc
lists: gprege
lists: FusionCatcher
lists: UniCarbKB
lists: clustergrammer
lists: clipcrop
lists: metabnorm
lists: rnaQUAST
lists: VirusMINT
lists: breseq
lists: PerM
lists: SnpEff
lists: DecGPU
lists: e-Driver
lists: NCBI BioProject
lists: Flye
lists: nondetects
lists: PEMer
lists: VCFtools
lists: STAR
lists: fastqz
lists: SAMTOOLS
lists: Neuroscience Information Framework
lists: eProbalign
lists: dbEST
lists: Dali Server
lists: Genomic Ranges
lists: GenomicFeatures
lists: Cistrome
lists: SOAPdenovo
lists: IRanges
lists: BpForms
lists: BcForms
lists: DIANA-mirPath
lists: AthaMap
lists: Ancestrymap
lists: AutoDock
lists: European Genome phenome Archive
lists: GEN3VA
lists: 4See
lists: ABNER
lists: Addgene
lists: A Classification of Mobile genetic Elements
lists: ADMIXTOOLS
lists: AETIONOMY
lists: ADMIXMAP
lists: ALCHEMY
lists: Allele Frequencies in Worldwide Populations
lists: ABS: A Database of Annotated Regulatory Binding Sites From Orthologous Promoters
lists: Alta-Cyclic
lists: Alternate splicing gallery
lists: Assisted Model Building with Energy Refinement (AMBER)
lists: ALOHOMORA
lists: AmpliconTagger
lists: Molecular Dynamics Workflow (BioKepler)
lists: ANDES
lists: ALBERT
lists: ape
lists: ArrayPipe
lists: ArrayMiner
lists: Aroma.affymetrix
lists: ASPEX
lists: The Alternatve Splicing Database
lists: ASSOCIATIONVIEWER
lists: Avogadro
lists: AutoAssemblyD
lists: BadMedicine
lists: BamView
lists: BAIT
lists: BatMeth
lists: AutoDock Vina
lists: BARS
lists: BCBtoolkit
lists: Athena
lists: BarraCUDA
lists: betaVAEImputation
lists: BiG-SLiCE
lists: BBSeq
lists: SVM based method for predicting beta hairpin structures in proteins
lists: BioCarta Pathways
lists: BayesEpiModels
lists: BiNGO: A Biological Networks Gene Ontology tool
lists: BeetleBase
lists: BAR
lists: BioConda
lists: Bioinformatics Toolkit
lists: Bionimbus
lists: biomaRt
lists: Bio++
lists: naiveBayesCall
lists: BioSimulations
lists: BioPlex
lists: Biopieces
lists: BRAIN
lists: BLAT
lists: BS Seeker
lists: Breakpointer
lists: Canu
lists: BioSimulators
lists: BRB-ArrayTools
lists: bioSyntax
lists: CATALYST
lists: BOMP: beta-barrel Outer Membrane protein Predictor
lists: bioRxiv
lists: CAT
lists: CCREL
lists: BWA
lists: CASPAR
lists: CARD
lists: CATH: Protein Structure Classification
lists: CATdb: a Complete Arabidopsis Transcriptome database
lists: Cell Image Library (CIL)
lists: CEM
lists: Cancer Genome Anatomy Project
lists: Centrifuge Classifier
lists: Bs-Seeker2
lists: ChimeraSlayer
lists: ChemSpider
lists: BSVF
lists: CiLiQuant
lists: Chipster
lists: CleanEx
lists: CHEBI
lists: cisTEM
lists: CiteFuse
lists: clustLasso
lists: Chromas
lists: ChiRA
lists: CNVer
lists: CITE-seq-Count
lists: CNV-seq
lists: circlncRNAnet
lists: CMap
lists: COGEME Phytopathogenic Fungi and Oomycete EST Database
lists: ClinVar
lists: ChIPMunk
lists: CODEHOP
lists: ClustVis
lists: CoCo
lists: CONTRA
lists: Comparative Metatranscriptomics Workflow
lists: ComiR
lists: CopyDetective
lists: ConDeTri
lists: Clinotator
lists: cortex
lists: ClinTrajAn
lists: CorMut
lists: Coot
lists: CRCView
lists: CUDASW++
lists: CovalentDock Cloud
lists: Chromosome Scale Assembler
lists: CYANA
lists: Datasets2Tools
lists: DBTSS: Database of Transcriptional Start Sites
lists: CoryneRegNet
lists: CSDeconv
lists: CRISPy-web
lists: dbSNP
lists: ΔG prediction server
lists: DGIdb
lists: DANPOS2
lists: CorrDrugTumorMSI
lists: NCBI database of Genotypes and Phenotypes (dbGap)
lists: Dictyostelium discoideum genome database
lists: DIAMOND
lists: DichroWeb
lists: DETONATE
lists: DicomTypeTranslator
lists: DIME
lists: DEXSeq
lists: DisProt - Database of Protein Disorder
lists: D-EE
lists: DAMBE
lists: DiffBind
lists: DiProGB
lists: DOGMA
lists: DSK
lists: ENIGMA
lists: Descriptions of Plant Viruses
lists: DOMINE: Database of Protein Interactions
lists: Dissect
lists: DrivAER
lists: Enrichr
lists: Variant Effect Predictor
lists: EBCall
lists: eDMR
lists: EMAN
lists: Entrez Gene
lists: ensembldb
lists: Ensembl
lists: Epigenomics Workflow on Galaxy and Jupyter
lists: Ensembl Genomes
lists: epitopepredict
lists: DISENTANGLER
lists: EpiDISH R package
lists: ECLIPSE
lists: Experimental Design Assistant
lists: EpiGRAPH
lists: European Variation Archive (EVA)
lists: eQtlBma
lists: Eukaryote Genes
lists: EXOMEPICKS
lists: fineSTRUCTURE
lists: Evex
lists: Evolutionary Couplings Server
lists: Examl
lists: NHLBI Exome Sequencing Project (ESP)
lists: FlowSOM
lists: FireDB
lists: FGENESH
lists: ExpressYourself
lists: fgsea
lists: FINDbase Worldwide
lists: FateID
lists: FluoRender
lists: An Integrated Multiple Structure Visualization and Multiple Sequence Alignment Application
lists: FlexProt: flexible protein alignment
lists: FlyBase
lists: FLOSS
lists: Full-Length cDNA Database
lists: FANTOM DB
lists: FragGeneScan
lists: FuncAssociate: The Gene Set Functionator
lists: FastQC
lists: Genome Database for Rosaceae
lists: Fugu Genome Project
lists: FunRich: Functional Enrichment analysis tool
lists: GASSST
lists: G-Mo.R-Se
lists: GeneCodis
lists: GASV
lists: FusionHunter
lists: Genome Annotation Generator
lists: GeneSeeker
lists: GenePattern Notebook
lists: GeCo3
lists: Gene3D
lists: GeMoMa
lists: GATK
lists: Genome Projector
lists: Genomedata
lists: Gene Expression Atlas
lists: GeneProf
lists: Genome Trax
lists: GENERECON
lists: Genometa
lists: GEDIT
lists: FunCluster
lists: Gibbs Motif Sampler
lists: GEMB
lists: Genome Reviews
lists: GensearchNGS
lists: GEPAT
lists: Genomic Annotation in Livestock for positional candidate LOci
lists: Generic GO Term Finder
lists: GermOnline
lists: VBASE2
lists: GEO2R
lists: GFINDer: Genome Function INtegrated Discoverer
lists: Generic GO Term Mapper
lists: Google
lists: Gene Ontology
lists: Genome Aggregation Database
lists: Gmove
lists: Git
lists: GNUMAP
lists: G protein receptor interaction feature finding instrument
lists: Graph2GO
lists: Gaggle
lists: GoMapMan
lists: Gramene
lists: GTDB-Tk
lists: GO2MSIG
lists: GMcloser
lists: Genovar
lists: Human Gene Mutation Database
lists: H-InvDB
lists: Bioinformatic Harvester IV (beta) at Karlsruhe Institute of Technology
lists: GRASS
lists: HTR
lists: International HapMap Project
lists: HASTE-project
lists: HARSH
lists: HAPLOCLUSTERS
lists: HSSP
lists: Homologous Sequences in Ensembl Animal Genomes
lists: Human Splicing Finder
lists: HPEPDOCK Server
lists: HS-TDT
lists: HubMed
lists: IBIS: Inferred Biomolecular Interactions Server
lists: hyfi: software suite for binding site search
lists: HiCUP
lists: Human Gene Connectome Server
lists: Identifiers.org
lists: HUGE - Human Unidentified Gene-Encoded large proteins
lists: Hybrid-denovo
lists: HINT
lists: HUDSEN
lists: IntEnz- Integrated relational Enzyme database
lists: IMG System
lists: HCLUST
lists: iDASH
lists: HiPipe
lists: IMGT/StatClonotype
lists: I-TASSER
lists: IRESite
lists: IMEx - The International Molecular Exchange Consortium
lists: IMGT/HLA
lists: ImJoy
lists: IMGT HighV-QUEST
lists: IMGT - the international ImMunoGeneTics information system
lists: IsoEM
lists: IPD - Immuno Polymorphism Database
lists: iPiG
lists: IPI
lists: Isaac
lists: Integr8 : Access to complete genomes and proteomes
lists: inGAP
lists: ISFinder
lists: jmzML
lists: Interolog/Regulog Database
lists: IsoLasso
lists: LAST
lists: LOCUSMAP
lists: J-Express
lists: IsaCGH
lists: IMG
lists: lncRNAdb
lists: InterProScan
lists: KGGSeq
lists: LDSELECT
lists: Magic
lists: JGI Genome Portal
lists: lme4
lists: MAP
lists: OntoQuest
lists: Database oDatabase of Predicted Subcellular Localization for Eukaryotic PDB Chainsf Predicted Subcellular Localization for Eukaryotic PDB Chains
lists: MACiE
lists: LitMiner
lists: long-read-tools
lists: LOCATE: subcellular localization database
lists: LTR_FINDER_parallel
lists: Maq
lists: MaizeGDB
lists: Mammalian Gene Collection
lists: Machado
lists: LRPath
lists: MentaLiST
lists: MatrixDB
lists: MARRVEL
lists: MEBS: Multigenomic Entropy-Based Score
lists: Libra
lists: LS-SNP/PDB
lists: mapDamage
lists: Maqview
lists: Mascot
lists: MAKER
lists: MapSplice
lists: MetAMOS
lists: MethylExtract
lists: MBGD - Microbial Genome Database
lists: MB-GAN
lists: MetaCyc
lists: MeQA
lists: MEGAHIT
lists: Metabolomics Workbench
lists: miRBase
lists: Metastats
lists: MBCluster.Seq
lists: metaXplor
lists: lsa_slurm
lists: MeRIP-PF
lists: MendelIHT.jl
lists: proMODMatcher
lists: mirTools
lists: MetaCyto
lists: MMAPPR
lists: MICSA
lists: MIRIAM Resources
lists: MaSuRCA
lists: UEA sRNA Workbench
lists: MetaVelvet
lists: miROrtho: the catalogue of animal microRNA genes
lists: MERMAID
lists: Mspire-Simulator
lists: MULTIMAP
lists: ML Repo
lists: MIP Scaffolder
lists: SCIPION
lists: MPscan
lists: MISA
lists: MobiDB
lists: MutPred
lists: MizBee
lists: MRFSEQ
lists: MultiLoc
lists: MP3 tool
lists: Multi-omics Visualization Platform
lists: NCBI Probe
lists: NeLS
lists: MoDIL
lists: MPDA
lists: Noncoding RNA database
lists: Myriads
lists: MUMmer
lists: Multiple Myeloma survival predictor
lists: mrCaNaVaR
lists: MULTIDISEQ
lists: mzMatch
lists: Mouse Phenome Database (MPD)
lists: NCBI
lists: Ngs backbone
lists: NetMHCpan Server
lists: miRpathDB
lists: NEMBASE
lists: Nucleic Acid Database
lists: NCBI Genome Workbench
lists: NeuroMatic
lists: Ngmlr
lists: nsSNPAnalyzer
lists: Nephele
lists: Online Resource for Community Annotation of Eukaryotes
lists: Omics Data Paper Generator
lists: Necklace
lists: NEST Simulator
lists: Genotyping
lists: NucleoFinder
lists: NGSView
lists: Open Trials
lists: ngLOC
lists: NetNGlyc
lists: nmrML
lists: NURD
lists: ObjTables
lists: Pathway Tools
lists: NeSSM
lists: NanoGalaxy
lists: PartiGeneDB
lists: NOrMAL
lists: Open Babel
lists: OsiriX Medical Imaging Software
lists: PDB Finder
lists: Opera
lists: Pathbase
lists: PEDIGREEQUERY
lists: PAZAR
lists: PDBe - Protein Data Bank in Europe
lists: PanoramaWeb
lists: Oncodrive-fm
lists: parSMURF
lists: Orientations of Proteins in Membranes database
lists: PEDHUNTER
lists: PeakAnalyzer
lists: Illuminating the Druggable Genome
lists: Phenotypes and eXposures Toolkit
lists: PeakSeq
lists: Pairwise Conservation Scores - An Algorithm to Identify Conserved K-mers
lists: PicTar
lists: Pash 3.0
lists: Pedigree-Draw
lists: OLego
lists: Parliament2
lists: Phylogeny.fr
lists: PEDPEEL
lists: Plant Co-expression Annotation Resource
lists: Peakzilla
lists: Pfam
lists: PhaseME
lists: PHI-base
lists: Eddy Lab Software
lists: PhyML
lists: Protein Information Resource
lists: PRADA
lists: PM4NGS
lists: PennSeq
lists: Philius
lists: PeptideAtlas
lists: PHYLIP
lists: PhenoMan
lists: Proteomics Identifications (PRIDE)
lists: pNovo+
lists: ProfCom - Profiling of complex functionality
lists: PIRSF
lists: PubCrawler
lists: PhyloPat
lists: PEMA
lists: Polygenic Pathways
lists: pFind Studio: pLink
lists: ProteomeXchange
lists: PLANTTFDB
lists: PyRosetta
lists: Phospho.ELM
lists: PRICE
lists: PolymiRTS
lists: PLINK/SEQ
lists: PrimerBank
lists: Pyntacle
lists: PubChem
lists: ProSight Lite
lists: PubGene
lists: PRED-TMBB
lists: Preseq
lists: ProtChemSI
lists: R Project for Statistical Computing
lists: RaptorX
lists: QSRA
lists: Protein Prospector
lists: PrimerSeq
lists: R/QTLBIM
lists: Reactome
lists: PyBEL
lists: PS-Plant Framework
lists: RepeatModeler
lists: QuickGO
lists: QmRLFS-finder
lists: RefSeq
lists: The Human Protein Atlas
lists: QGene
lists: PolyPhred
lists: Rampart
lists: ResponseNet
lists: QUMA
lists: QMSIM
lists: RAREMETAL
lists: Relate
lists: ReactomePA
lists: RESID
lists: RADAR-base
lists: Reaper - Demultiplexing trimming and filtering sequencing data
lists: R-SAP
lists: Research-tested Intervention Programs (RTIPs)
lists: RNA FRABASE - RNA FRAgments search engine and dataBASE
lists: Reptile
lists: Rdisop
lists: RNA-SeQC
lists: RNA Virus Database
lists: RESCUE-ESE
lists: REDItools
lists: RegulonDB
lists: SeqExpress
lists: Scansite
lists: RiboTaper
lists: SALT
lists: riborex
lists: REDfly Regulatory Element Database for Drosophilia
lists: rna-stability
lists: RNAplex
lists: rSNP Guide
lists: SVA
lists: RightField
lists: runBioSimulations
lists: SAMMate
lists: SeqtrimNEXT
lists: rSeq
lists: SeqEM
lists: ROMPREV
lists: SeqSaw
lists: SHARCGS
lists: SAFA Footprinting Software
lists: SHELX
lists: sapFinder
lists: QuPath
lists: SIBLINK
lists: Seqtk
lists: SEEK
lists: SMRT View
lists: SKAT
lists: SimRare
lists: SeQuiLa
lists: SGA
lists: SASQUANT
lists: Sherman
lists: SilkDB
lists: FASTSLINK
lists: SASGENE
lists: SILVA
lists: SGD
lists: ShinyGO
lists: SimSeq
lists: SIDER
lists: SMI Services
lists: Sniffles
lists: STEPS
lists: SNP HITLINK
lists: SOAPnuke
lists: SGN
lists: SIBMED
lists: SIMULATE
lists: rnaSPAdes
lists: SpliceMap
lists: SMART
lists: SnoopCGH
lists: SynTView
lists: SIMPED
lists: Supersplat
lists: SnpSift
lists: SISSRs
lists: Sybil
lists: Solas
lists: SNPTEST
lists: SISYPHUS
lists: ASC
lists: SOAPfusion
lists: TAndem Splice Site DataBase
lists: SoupX
lists: StSNP
lists: T-lex
lists: SWEEP
lists: SynergyFinder
lists: topGO
lists: TAPIR: target prediction for plant microRNAs
lists: TDT-PC
lists: TDR Targets Database
lists: SpoTyping
lists: ShortFuse
lists: SWISS-2DPAGE
lists: Spot
lists: TAGS
lists: SYFPEITHI: A Database for MHC Ligands and Peptide Motifs
lists: SUMSTAT
lists: TMAJ
lists: TASSEL
lists: TreeDyn
lists: TropGENE DB
lists: TB PORTALS
lists: SwissTree
lists: tradeSeq
lists: FLUX CAPACITOR
lists: UNAFold
lists: Transporter Classification Database
lists: ApiDB ToxoDB
lists: Trowel
lists: TopFIND
lists: TRAL
lists: Trim Galore
lists: Biological General Repository for Interaction Datasets (BioGRID)
lists: IQ-TREE
lists: VirusSeq
lists: Tool recommender system in Galaxy
lists: V-Phaser 2
lists: SPIKE
lists: Trans-ABySS
lists: TRiCoLOR
lists: TomoMiner
lists: variancePartition
lists: TRACESPipe
lists: UTRdb/UTRsite
lists: UniParc
lists: TWOLOC
lists: USeq
lists: Zebrafish Information Network (ZFIN)
lists: XPN
lists: TransmiR
lists: Webproanalyst
lists: UTGB Toolkit
lists: VAAST
lists: VirusHunter
lists: Yeast Search for Transcriptional Regulators And Consensus Tracking
lists: zUMIs
lists: VaDiR
lists: WSsas - Web Service for the SAS tool
lists: VFDB - Virulence Factors of Bacterial Pathogens
lists: Gene Index Project
lists: Vector Alignment Search Tool
lists: Vmatch
lists: WEIGHTED FDR
lists: Xenbase
lists: xia2 pipeline
lists: YASARA
lists: Visualization and Analysis of Networks containing Experimental Data (VANTED)
lists: VisSR
lists: dbEST
lists: DESeq2
lists: DNA DataBank of Japan (DDBJ)
lists: FASTX-Toolkit
lists: Trimmomatic
lists: VIPERdb
lists: PhenStat
lists: ABySS
lists: Integrative Genomics Viewer
lists: Human Disease Ontology
lists: LINKAGE
lists: ConSurf Database
lists: Protein Information Resource
lists: PredictNLS
lists: tRNAscan-SE
lists: VeryFastTree
lists: RSEM
lists: Emboss Water
lists: MEtabolomes, TRaits, and INteractions-Knowledge Graph
is listed by: Debian
is listed by: ELIXIR Tools and Data Services Registry
is affiliated with: ELIXIR Tools and Data Services Registry
is related to: ms-utils.org
is related to: SUP
|
|
European Union Horizon 2020 ELIXIR-EXCELERATE grant 676559;
Danish Ministry of Higher Education and Science |
DOI:10.1186/s13059-019-1772-6
PMID:26538599 |
Free, Freely available |
|
biotools:bio.tools, r3d100013668 |
https://github.com/bio-tools/biotoolsRegistry/, https://bio.tools/bio.tools, https://doi.org/10.17616/R31NJN1G |
http://bio.tools |
|
SCR_014695 |
|
2026-08-02 09:06:38 |
24 |
Vesiclepedia
Resource Report
Resource Website
100+ mentions
|
Vesiclepedia (RRID:SCR_019011)
|
|
data or information resource, database, data repository, service resource, storage service resource
|
Web based database of proteins, RNA, lipids and metabolites that are identified in extracellular vesicles. Compendium for extracellular vesicles with continuous community annotation and with manually curated data from published literature.
|
Extracellular vesicles, gene information, molecule information, protein, RNA, lipid, metabolite, gene ontology, annotation, external references, FASEB list
|
uses: Entrez Gene
|
|
Australian Research Council ;
NHMRC project grant |
DOI:10.1371/journal.pbio.1001450
DOI:10.1093/nar/gky1029 |
Free, Freely available |
|
|
|
|
|
SCR_019011 |
Vesiclepedia 2019 |
2026-08-02 09:07:55 |
149 |
biomaRt
Resource Report
Resource Website
1000+ mentions
|
biomaRt (RRID:SCR_019214)
|
|
data analysis software, software resource, data processing software, software application
|
Software package that integrates BioMart data resources with data analysis software in Bioconductor. Can annotate range of gene or gene product identifiers including Entrez Gene and Affymetrix probe identifiers with information such as gene symbol, chromosomal coordinates, Gene Ontology and OMIM annotation. Enables retrieval of genomic sequences and single nucleotide polymorphism information, which can be used in data analysis.
|
BioMart databases, Bioconductor, data analysis, BioMart data integration, gene annotation, gene product identifiers annotation, gene symbol retrival, chromosomal coordinates retrival, genomic sequence retrival, nucleotide polimorphism information, , bio.tools
|
is listed by: Bioconductor
is listed by: bio.tools
is listed by: Debian
is listed by: SoftCite
is related to: BioMart Project
is related to: BioMart MartView
is related to: Entrez Gene
is related to: Affymetrix
is related to: Gene Ontology
is related to: OMIM
is related to: Affymetrix
|
|
|
PMID:16082012 |
Free, Available for download, Freely available |
|
biotools:biomart |
https://bio.tools/biomart |
|
|
SCR_019214 |
biomaRt v 2.42.1 |
2026-08-02 09:07:58 |
2638 |
OMICtools
Resource Report
Resource Website
10+ mentions
|
OMICtools (RRID:SCR_002250)
|
OMICtools
|
database, catalog, data or information resource
|
THIS RESOURCE IS NO LONGER IN SERVICE. Documented Jul 19, 2024. Metadatabase manually curated that provides web accessible tools related to genomics, transcriptomics, proteomics and metabolomics. Used as informative directory for multi-omic data analysis.
|
metadatabase, manually, curated, tool, genomic, transcriptomic, proteomic, metabolomic, data
|
lists: ncdfFlow
lists: BSmooth-align
lists: 4Peaks
lists: CSDeconv
lists: Tablet
lists: GenomicRanges
lists: SNPSVM
lists: ReadqPCR
lists: SP-Designer
lists: CorMut
lists: ChIPmeta
lists: FACS
lists: metaSeq
lists: Dissect
lists: Fusion Analyser
lists: FusionCatcher
lists: GASV
lists: GHOSTM
lists: nFuse
lists: PD5
lists: Patchwork
lists: QuadGT
lists: VariantAnnotation
lists: ReQON
lists: SnowsShoes-FTD
lists: timecourse
lists: SOAPfuse
lists: SOAPfusion
lists: pFind Studio: pLink
lists: Spotfinder
lists: AbMining ToolBox
lists: SNAVI
lists: MetAssign
lists: JChemPaint
lists: siRNArules
lists: AutoPrime
lists: RmiR.Hs.miRNA
lists: MysiRNA-designer
lists: TACOA
lists: Treephyler
lists: MedGen
lists: D-Tailor
lists: BioLemmatizer
lists: AffyRNADegradation
lists: Orphelia
lists: ArrayExpress (R)
lists: Parallel-META
lists: CovalentDock Cloud
lists: DOCK
lists: exomeSuite
lists: SPAdes
lists: Sequence Read Format
lists: FastQ Screen
lists: GEOquery
lists: Bovine Genome Database
lists: GISTIC
lists: DESeq
lists: Postgwas
lists: BLASTPLOT
lists: miRanalyzer
lists: Magnolya
lists: GMATo
lists: GemSIM
lists: Grinder
lists: Illuminate
lists: RNAcontext
lists: MIMOSA
lists: F2DockClient
lists: FlexX
lists: Glide
lists: GOLD
lists: Molegro Virtual Docker
lists: Sanjeevini
lists: SODOCK
lists: HEM
lists: Surflex-Dock
lists: Cascleave
lists: MetaDE
lists: Cell Death Proteomics Database
lists: GPS-Calpain Cleavage Detector
lists: GraBCas
lists: c3net
lists: Context Likelihood of Relatedness
lists: GENIE3
lists: Inferelator
lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks
lists: MRNet
lists: UnSplicer
lists: Duplicate reads removal
lists: PEpiD
lists: TAPIR: target prediction for plant microRNAs
lists: iOMICS
lists: Megraft
lists: VARiD
lists: Cistrome
lists: PSGInfer
lists: MochiView
lists: RSEM
lists: RNAmotifs
lists: M(at)CBETH
lists: MS-Spectre
lists: Quant
lists: RNASeqReadSimulator
lists: iFad
lists: GramCluster
lists: GProX
lists: PeptideProphet
lists: CNTools
lists: Lasergene's SeqMan Pro
lists: ProteinProphet
lists: OMSSAPercolator
lists: Flicker
lists: cn.FARMS
lists: LIPAGE
lists: DNASTAR: Lasergene Core Suite
lists: Clonality
lists: oneClickCGH
lists: CGH Fusion
lists: Screensaver
lists: fqzcomp
lists: ArrayPlex
lists: MiRdup
lists: MeQA
lists: Methyl-Analyzer
lists: Annotare
lists: CpGassoc
lists: Koadarray
lists: RADtools
lists: rtd
lists: ABrowse
lists: GPViz
lists: cuteNMR
lists: Jnomics
lists: JMolDraw
lists: CGAP-Align
lists: ARACHNE
lists: Kinannote
lists: CLC Main Workbench
lists: ParseCNV
lists: TAPS
lists: PyroHMMsnp
lists: TransView
lists: pvac
lists: riboPicker
lists: NucleoFinder
lists: bzip2
lists: GENSENG
lists: AS-Peak
lists: is-rSNP
lists: ILLUMINUS
lists: QUALIFIER
lists: FunctSNP
lists: Micro-Analyzer
lists: flowStats
lists: flowPeaks
lists: metaMA
lists: rTANDEM
lists: flowFlowJo
lists: TargetCaller
lists: PSCBS
lists: iASeq
lists: d2-tools
lists: PEPPER
lists: OLINgui
lists: TNO-DECO
lists: SigFuge
lists: stsPlots
lists: Sulfinator
lists: Rdisop
lists: pbcore
lists: GeneExpressionSignature
lists: sybil - Efficient Constrained Based Modelling in R
lists: msbwt
lists: MetaDrug
lists: Reprever
lists: POPBAM
lists: SAMBLASTER
lists: SpeedSeq
lists: pyQPCR
lists: RefFinder
lists: PGS
lists: miRprimer
lists: iBMQ
lists: NIMBL
lists: TDARACNE
lists: bamova
lists: BAIT
lists: ARNIE
lists: fourSig
lists: Mfuzz
lists: MaryGold
lists: TOPPAS
lists: SPHINX
lists: PhyloPythia
lists: MATCHCLIP
lists: mzMatch
lists: Sequence Search and Alignment by Hashing Algorithm
lists: ESPRIT
lists: DySC
lists: FPSAC
lists: Scaffold builder
lists: SNPiR
lists: ACCUSA2
lists: MuTect
lists: Pindel
lists: rSeq
lists: GERP
lists: SiPhy
lists: wANNOVAR
lists: ViReMa
lists: Smart Dictionary Lookup
lists: VariantMaster
lists: GeneWays
lists: AdaptiveCrawler
lists: NGS-Cleaner
lists: flowQ
lists: Database Enabled Code for Ideal Probe Hybridization Employing R
lists: NGSmethPipe
lists: Pyrocleaner
lists: DecGPU
lists: drFAST
lists: MPscan
lists: TAPyR
lists: MutPred Splice
lists: ContEst
lists: Mini Analysis Guide for Microarrays
lists: DDBJ Omics Archive
lists: Chromas
lists: OnEx - Ontology Evolution Explorer
lists: BEBaC
lists: FlipFlop
lists: Phosphor Antibody Array Data Analysis
lists: PhenoFam
lists: forqs
lists: GMcloser
lists: GenomeWeb
lists: Bycom
lists: CorQ
lists: NGS tools for the novice
lists: Opera
lists: SRMA
lists: DeNovoGear
lists: VarB
lists: BAMseek
lists: TriageTools
lists: clipcrop
lists: detecttd
lists: FastUniq
lists: GEUVADIS
lists: TMAP
lists: BISMA
lists: FineSplice
lists: RMAP
lists: Sequencing Analysis Software
lists: BLASR
lists: GlycoWorkbench
lists: jmzIdentML API
lists: SciRoKo
lists: HapCompass
lists: JBrowse
lists: DSRC
lists: fastqz
lists: GDC
lists: GRS
lists: PREFAB
lists: BLASTP
lists: Google Compute Engine
lists: SplitSeek
lists: ASC
lists: NPEBseq
lists: FUSIM
lists: Geoffs Bio-Directories
lists: Phred
lists: MassGenomics
lists: Illuminator
lists: BAC
lists: targetscan.Hs.eg.db
lists: RmiR
lists: MmPalateMiRNA
lists: Starr
lists: bsseq
lists: Qvalue
lists: ExomePeak
lists: NextGenSeq(at)nature.com
lists: AutoAssemblyD
lists: CUDA-EC
lists: rGADEM
lists: qips
lists: PICS
lists: Jmosaics
lists: SparseAssembler
lists: BreakFusion
lists: ParticleCall
lists: DSGseq
lists: R453Plus1Toolbox
lists: SynView
lists: ShortFuse
lists: Cancer Gene Index
lists: jmzML
lists: CASVM
lists: Birdseed
lists: Reaper - Demultiplexing trimming and filtering sequencing data
lists: GimmeMotifs
lists: skewer
lists: flowWorkspace
lists: massiR
lists: Transposon Insertion Finder
lists: Shimmer
lists: GenVision
lists: DiMO
lists: MetaPhyl
lists: WiggleTools
lists: EMI
lists: SplicePlot
lists: CrossMap
lists: GraphIBD
lists: rbsurv
lists: Skylign
lists: HMMvar
lists: tbvar
lists: STRViper
lists: Breakway
lists: Genometa
lists: CATCHprofiles
lists: VAAL
lists: SLOPE
lists: BreakSeq
lists: Anchored Assembly
lists: Bionimbus
lists: ChIPMunk
lists: RDPipeline
lists: PeakAnalyzer
lists: SomaticCall
lists: Baa.pl
lists: VirusHunter
lists: seq2HLA
lists: MUMmerGPU
lists: GeneMeta
lists: GenoMiner
lists: GenoViewer
lists: sim4cc
lists: GenomicTools
lists: Omixon Target HLA Typing
lists: Omixon Target Data Analysis
lists: PARalyzer
lists: QualiMap
lists: Lab7
lists: mlgt
lists: BSSim
lists: Golden Helix GenomeBrowse
lists: HiPipe
lists: MADAM
lists: Microarray Data Analysis System
lists: Automated Microarray Pipeline
lists: MergeMaid
lists: OmicsOffice for NGS SeqSolve
lists: categoryCompare
lists: metahdep
lists: Plantagora
lists: QUAST
lists: TileQC
lists: VectorFriends
lists: vcflib
lists: PHACCS
lists: Sequedex
lists: Genome Trax
lists: VCFtools
lists: NGSUtils
lists: ChIP-seq
lists: Tally
lists: mapDamage
lists: freeIbis
lists: piCALL
lists: ERGO
lists: TALLYMER
lists: KMC
lists: DSK
lists: Mutation Surveyor
lists: BFCounter
lists: snpStats: SnpMatrix and XSnpMatrix classes and methods
lists: CNVtools
lists: CGEN
lists: RCASPAR
lists: iterativeBMAsurv
lists: multtest
lists: globaltest
lists: SABER
lists: Local Ancestry in adMixed Populations
lists: GemTools
lists: MinimumDistance
lists: ipPCA
lists: ADMIXTURE
lists: frappe
lists: Mutascope
lists: metabnorm
lists: VegaMC
lists: VanillaICE
lists: SNPchip
lists: SMAP
lists: quantsmooth
lists: mBPCR
lists: ITALICS
lists: GenoSet
lists: exomeCopy
lists: CGHregions
lists: CGHbase
lists: BlindCall
lists: beadarraySNP
lists: SSCprofiler
lists: CGH-Explorer
lists: GLAD
lists: SNP and Variation Suite SNP Analysis
lists: SNP and Variation Suite CNV Analysis
lists: ProbRNA
lists: methylMnM
lists: methyAnalysis
lists: les
lists: ARRmNormalization
lists: ChIPsim
lists: Sherman
lists: yaqcaffy
lists: wateRmelon
lists: sRAP
lists: spotSegmentation
lists: SNM
lists: SNAGEE
lists: Simpleaffy
lists: qcmetrics
lists: OLIN
lists: MANOR
lists: limmaGUI
lists: ffpe
lists: dyebias
lists: DEXUS
lists: BeadDataPackR
lists: aroma.light
lists: ArrayTools
lists: beadarray
lists: arrayQuality
lists: arrayMvout
lists: affyQCReport
lists: affyPLM
lists: affylmGUI
lists: AffyExpress
lists: waveTiling
lists: KAnalyze
lists: gprege
lists: oneChannelGUI
lists: CYCLE
lists: LMGene
lists: factDesign
lists: pickgene
lists: betr
lists: NGSrich
lists: SCAN.UPC
lists: arrayQualityMetrics
lists: CALIB
lists: DEDS
lists: Harshlight
lists: MiChip
lists: OCplus
lists: bridge
lists: FARMS
lists: fRMA
lists: genArise
lists: lapmix
lists: maCorrPlot
lists: maSigPro
lists: MACAT
lists: maigesPack
lists: MDQC
lists: metaArray
lists: nnNorm
lists: plgem
lists: PVCA
lists: RAMA
lists: stepNorm
lists: virtualArray
lists: LPE
lists: DDBJ Sequence Read Archive
lists: WegoLoc
lists: Mugsy
lists: Mspire-Simulator
lists: CytoSPADE
lists: vsn
lists: ACME
lists: GenGIS
lists: CoGAPS
lists: NTAP
lists: ToppCluster
lists: PyLOH
lists: Nebula
lists: Sequencher
lists: flowFP
lists: ChIPseeqer
lists: CisGenome
lists: CGHcall
lists: rMAT
lists: TileMap
lists: Clustal Omega
lists: BLASTN
lists: SeqScape Software
lists: BACContigEditor
lists: Human Gene Mutation Database
lists: AnimalTFDB
lists: asSeq
lists: Cuffdiff
lists: BLASTX
lists: SLqPCR
lists: rSeqDiff
lists: AffinDB
lists: Enriched Domain Detector
lists: A Classification of Mobile genetic Elements
lists: PELICAN
lists: nondetects
lists: rlsim
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: unifiedWMWqPCR
lists: HAPLOPAINTER
lists: HOMOZYGOSITYMAPPER
lists: QuasiSeq
lists: sSeq
lists: GERMLINE
lists: MCMC.qpcr
lists: CNVrd2
lists: TaLasso
lists: pairedBayes
lists: RNASeqBias
lists: plateCore
lists: PLINK
lists: MACH 1.0
lists: PennSeq
lists: FACTA+.
lists: Prediction of Amyloid Structure Aggregation
lists: TANGO
lists: DNACLUST
lists: InterMine
lists: MSClust
lists: ReCount - A multi-experiment resource of analysis-ready RNA-seq gene count datasets
lists: RSVSim
lists: TCC
lists: SAMstrt
lists: pRESTO
lists: MEME Suite - Motif-based sequence analysis tools
lists: PoissonSeq
lists: CQN
lists: GLiMMPS
lists: TEMP
lists: BEAGLE
lists: SPP
lists: BIRDSUITE
lists: NASTIseq
lists: BREAKDANCER
lists: CAROL
lists: COMPASS
lists: CASAVA
lists: flowClust
lists: HSA
lists: SPADE
lists: AStalavista
lists: Visual Molecular Dynamics
lists: EXTREME
lists: CYRILLIC
lists: DINDEL
lists: ASprofile
lists: OrderedList
lists: GenABEL
lists: CCAT
lists: Alt Event Finder
lists: BroadPeak
lists: SamSPECTRAL
lists: THetA
lists: TCW
lists: GATK
lists: Degust
lists: flowUtils
lists: DAVID
lists: RchyOptimyx
lists: StatAlign
lists: Arabidopsis thaliana Protein Interactome Database
lists: FGED
lists: ExpressionPlot
lists: S-MART
lists: Pecan
lists: SeqMonk
lists: Ray
lists: tbrowse
lists: Bacteriome.org
lists: Apollo
lists: RAVEN
lists: PEDIGRAPH
lists: BAliBASE
lists: TEQC
lists: rSNPs MAPPER
lists: rSNPBase
lists: SNP Function Portal
lists: flowType
lists: SNPper
lists: MADELINE
lists: CanSNPer
lists: ADaCGH2
lists: SGA
lists: NormaCurve
lists: GapMis
lists: TRAMS
lists: SNPMeta
lists: SNPAAMapper
lists: METAL
lists: OLORIN
lists: openADAM
lists: SeqEM
lists: SHARCGS
lists: DMET-Analyzer
lists: PEDHUNTER
lists: AffyPipe
lists: pSTIING
lists: PTMcode
lists: SHORTY
lists: POLYMUTT
lists: TissueNet - The Database of Human Tissue Protein-Protein Interactions
lists: TRIP Database
lists: SNVer
lists: BISC
lists: Primate Orthologous Exon Database
lists: PurBayes
lists: PyroHMMvar
lists: flowViz
lists: ChIPSeq Peak Finder
lists: SpliceAid-F
lists: Vennt
lists: flowTrans
lists: Spliceosome Database
lists: cisRED: cis-regulatory element
lists: ASPicDB
lists: SAMTOOLS
lists: HEXEvent
lists: DBASS
lists: FlyFactorSurvey
lists: SNAP - SNP Annotation and Proxy Search
lists: STIFDB
lists: Cake
lists: MPromDb
lists: ProTISA
lists: circlize
lists: AmiGO
lists: flowQB
lists: Cinteny
lists: RegPrecise
lists: STRUCTURE
lists: SVA
lists: SYZYGY
lists: TcoF
lists: Matchprot
lists: WebGeSTer DB
lists: pfSNP
lists: shinyTANDEM
lists: CistromeMap
lists: metaRNASeq
lists: ZOOM
lists: flowPlots
lists: ImaGene
lists: VAAST
lists: ARACNE
lists: FR-HIT
lists: PROVEAN
lists: flowPhyto
lists: flowCore
lists: flowMerge
lists: RankAggreg
lists: ConsensusPathDB
lists: MAIA (Microarray Image Analysis)
lists: CORUM
lists: CoryneRegNet
lists: miso-lims
lists: COSMIC - Catalogue Of Somatic Mutations In Cancer
lists: cpnDB: A Chaperonin Database
lists: flowMap
lists: rmeta
lists: flowMeans
lists: CTCFBSDB
lists: spliceR
lists: flowMatch
lists: flowFit
lists: DEMI
lists: Binding MOAD
lists: DBD: Transcription factor prediction database
lists: CodonCodes TraceViewer
lists: RelocaTE
lists: MAGE
lists: flowCyBar
lists: Iterative Signature Algorithm
lists: Variant Reporter Software
lists: RepARK
lists: PolyPhred
lists: dbSNP
lists: BEETL-fastq
lists: DWGSIM
lists: Ensembl
lists: DBTBS
lists: MIAME
lists: MAQC
lists: HaploClique
lists: DBTSS: Database of Transcriptional Start Sites
lists: DNA DataBank of Japan (DDBJ)
lists: ISO
lists: SBARS
lists: Clinical and Laboratory Standards Institute
lists: JGI Genome Portal
lists: Cancer Genomics Consortium
lists: BEAT
lists: DOMINO: Domain peptide interactions
lists: R Tutorial - An R Introduction to Statistics
lists: R Tutorial
lists: DOMINE: Database of Protein Interactions
lists: GenomeSmasher
lists: DOSY Toolbox
lists: MUMA
lists: Database of Rice Transcription Factors
lists: VennDiagram
lists: Quick-R
lists: EcoCyc
lists: Tree of Life
lists: flowBeads
lists: EDAS - EST-Derived Alternative Splicing Database
lists: eggNOG
lists: NRDR
lists: YLoc
lists: CAMERA - Collection of annotation related methods for mass spectrometry data
lists: EID: Exon-Intron Database
lists: WoLF PSORT
lists: Entrez Gene
lists: Mason
lists: QualitySNPng
lists: EPDnew
lists: realSFS
lists: pymzML
lists: RUbioSeq
lists: PBSIM
lists: PennCNV
lists: pIRS
lists: PeptideShaker
lists: ShotGun
lists: Gibbs Motif Sampler
lists: Zebrafish Information Network (ZFIN)
lists: Wessim
lists: BioStar
lists: MBASED
lists: discoSnp
lists: RVD
lists: SEEK
lists: MethylAid
lists: ExomeDepth
lists: libmgf
lists: Autophagy Database
lists: T3DB
lists: RopeBWT2
lists: e-Driver
lists: sapFinder
lists: PharmGKB
lists: CTF
lists: SuperTarget
lists: DrugBank
lists: PANDAseq
lists: NCBI database of Genotypes and Phenotypes (dbGap)
lists: leeHom
lists: Reflect
lists: Mapix
lists: Rainbow
lists: CASBAH
lists: TelSeq
lists: Pathview
lists: GLProbs
lists: rBiopaxParser
lists: DSS
lists: GATE
lists: NetPathMiner
lists: NMR metabolomics database of Linkoping
lists: GenBank
lists: HINT
lists: libCSAM
lists: RNA Abundance Database
lists: GeneCards
lists: BINOCh
lists: AliView
lists: TherMos
lists: ANDES
lists: PacmonSTR
lists: RMassBank
lists: FisHiCal
lists: Mutation Annotation and Genomic Interpretation
lists: Circleator
lists: IMEx - The International Molecular Exchange Consortium
lists: Batch Oligo Selection Script
lists: iontree
lists: MicroVigene
lists: Greengenes
lists: Basic4Cseq
lists: rDock
lists: hot scan
lists: International HapMap Project
lists: BiGGR
lists: mzR
lists: PAPi
lists: pNovo+
lists: COV2HTML
lists: CODEHOP
lists: CNVassoc
lists: PRO
lists: Hollywood
lists: StreamingTrim
lists: pLabel
lists: HomoloGene
lists: aCGH.Spline
lists: pBuild
lists: Time-series RNA-seq Analysis Package
lists: CGHnormaliter
lists: Type-III-Secretion-System related database
lists: SMRT-Analysis
lists: CPTRA
lists: mtDB - Human Mitochondrial Genome Database
lists: AltAnalyze - Alternative Splicing Analysis Tool
lists: Chimera
lists: IMG System
lists: Babelomics
lists: MRFSEQ
lists: ms lims
lists: ChIPMonk
lists: Gel2DE
lists: UCSF Spot
lists: ProRata
lists: R-pbutils
lists: MITOMAP - A human mitochondrial genome database
lists: NOISeq
lists: Dpos
lists: Gene Weaver
lists: pFind
lists: Canadian College of Medical Geneticists
lists: BRAIN
lists: Isopat
lists: R-pbh5
lists: pbh5tools
lists: SMRT View
lists: JASPAR
lists: enviPat
lists: bwtool
lists: MoSDi
lists: tweeDEseq
lists: DIALIGN
lists: PacBioToCA
lists: DiNuP
lists: Gutentag
lists: Parametric Time Warping
lists: SurvComp
lists: SASqPCR
lists: enviPick
lists: GeneFisher
lists: Triplex
lists: MPprimer
lists: MIPE
lists: MFEprimer
lists: DnaSP
lists: FAS-DPD
lists: SURPI
lists: MAPPER - Multi-genome Analysis of Positions and Patterns of Elements of Regulation
lists: MachiBase
lists: Primer3Plus
lists: e-PCR
lists: NeuroMab
lists: In-Silico PCR
lists: JETTA
lists: MapViewer
lists: Primer-BLAST
lists: WormBase
lists: eQtlBma
lists: JuncBASE
lists: MethDB
lists: pairheatmap
lists: MISO
lists: HYDEN
lists: mrsFAST
lists: PredictNLS
lists: mrCaNaVaR
lists: NovelSeq
lists: PlantLoc
lists: Primer3
lists: FastSNP
lists: Proteome Analyst Specialized Subcellular Localization Server
lists: NYCE
lists: GeneScissors
lists: ngLOC
lists: MultiLoc
lists: GeneCruiser
lists: MetaLocGramN
lists: FastPCR
lists: miRNAMap
lists: HUPO Proteomics Standards Initiative
lists: SaskPrimerFS
lists: rDiff
lists: Database of Interacting Proteins (DIP)
lists: Solas
lists: Pipeliner
lists: iLoc-Animal
lists: QDNAseq
lists: ResponseNet
lists: SynSysNet
lists: XORRO
lists: Stacks
lists: SECISearch3 and Seblastian
lists: SALT
lists: HyperTree
lists: Primer Designer
lists: r3Cseq
lists: Gene Set Enrichment Analysis
lists: Piano
lists: PHAST
lists: NHGRI: Establishing a Central Resource of Data from Genome Sequencing Projects
lists: NGSadmix
lists: Gemi
lists: Talking Glossary of Genetic Terms
lists: PathGuide: the pathway resource list
lists: SplicingCompass
lists: RNAhybrid
lists: LUMPY
lists: Geospiza
lists: SpliCQ
lists: ORFprimer
lists: JCVI Primer Designer
lists: Assembly Based ReAligner
lists: deFuse
lists: Xenbase
lists: PoPoolation2
lists: OmicCircos
lists: Amplicon
lists: PrimerSeq
lists: Genedata Expressionist
lists: biobambam
lists: RCircos
lists: ggbio
lists: DAFGA
lists: MIPgen
lists: PicTar
lists: BlockClust
lists: PIRSF
lists: miR-PREFeR
lists: MouseNET
lists: PlantProm DB
lists: MAGI
lists: PLANTTFDB
lists: ALDEx2
lists: qBasePLUS
lists: RefGenes
lists: HTqPCR
lists: BestKeeper
lists: NanoStringNorm
lists: NormFinder
lists: NormqPCR
lists: PolymiRTS
lists: PPDB: Plant Promoter Database
lists: ddCt
lists: GEOSS
lists: PReMod
lists: EasyqpcR
lists: NanoStriDE
lists: GBSA
lists: LaSSO
lists: NAPPA
lists: nSolver Analysis Software
lists: MAGENTA
lists: MetABEL
lists: ProNIT
lists: genomation
lists: metagen
lists: BMIQ
lists: FadE
lists: metaphor
lists: SWAN
lists: PROSITE
lists: Parseq
lists: qPrimerDepot
lists: Bpipe
lists: Nestly
lists: Snakemake
lists: SNAPE-pooled
lists: NGSANE
lists: jmzTab
lists: JISTIC
lists: Savant
lists: MetaSKAT
lists: Human Variome Project
lists: PoPoolation
lists: RefSeq
lists: MultiPhen
lists: RegulonDB
lists: MF-GE
lists: PheWAS R Package
lists: EBSeq
lists: MSMS
lists: RAREMETAL
lists: RevMan
lists: GEPAT
lists: Polyester
lists: SET
lists: J-Express
lists: UEA sRNA toolkit
lists: Osprey
lists: RINS
lists: PyroBayes
lists: PEAR
lists: JATAC
lists: SeqExpress
lists: Quantitative Enrichment of Sequence Tags
lists: Pash 3.0
lists: Factorbook
lists: FlyTF.org
lists: My Cancer Genome
lists: Pathosystems Resource Integration Center
lists: MSG
lists: InsertionMapper
lists: PubMed Central
lists: GeneCommittee
lists: INMEX
lists: TagDust
lists: PASS-bis
lists: HLASeq
lists: FIDEA
lists: EGAPP
lists: DCTD
lists: Hapmix
lists: BamView
lists: PerM
lists: Mercury
lists: CDP
lists: CB-Commander
lists: BSRD
lists: DER Finder
lists: Artemis: Genome Browser and Annotation Tool
lists: PeaKDEck
lists: PubChem
lists: Babel
lists: bcbio-nextgen
lists: SIDER
lists: EpiGRAPH
lists: DRUT
lists: Ancestrymap
lists: VIROME
lists: Vanator
lists: FACIL
lists: Velvet-SC
lists: SNiPer-HD
lists: Squeezambler
lists: UniGene
lists: SCPD - Saccharomyces cerevisiae promoter database
lists: GASSST
lists: SnoopCGH
lists: Taverna
lists: PASHA
lists: miRDeepFinder
lists: STAR
lists: Spanki
lists: VAMPS
lists: Basic OligoNucleotide Design
lists: Tree and reticulogram REConstruction
lists: ACT: Artemis Comparison Tool
lists: SPInDel
lists: Kdetrees
lists: tree editor
lists: Genomedata
lists: BioDiscovery Nexus Copy Number
lists: TETRA
lists: MetaCluster-TA
lists: DELLY
lists: QuickGO
lists: TAIR
lists: CompostBin
lists: Nonpareil
lists: BioPig
lists: LMAT
lists: AbundanceBin
lists: TaxSOM
lists: NuChart
lists: ProViDE
lists: UnifiedGenotyper
lists: SOrt-ITEMS
lists: RAIphy
lists: Human DNA Polymerase Gamma Mutation Database
lists: Pfam
lists: Distributed String Mining Framework
lists: Pplacer
lists: deStruct
lists: Phymm and PhymmBL
lists: USeq
lists: NucPosSimulator
lists: NBC
lists: SVMerge
lists: MLTreeMap
lists: SVseq
lists: SEQanswers
lists: PRISM - Pair Read Informed Split Mapper
lists: miRNAKey
lists: MG-RAST
lists: Information Hyperlinked Over Proteins
lists: PubMed
lists: MetaPhyler
lists: MARTA
lists: NCBI BioSample
lists: BioSample Database at EBI
lists: DiScRIBinATE
lists: VariationHunter
lists: NCBI BLAST
lists: IBIS: Inferred Biomolecular Interactions Server
lists: NCBI Sequence Read Archive (SRA)
lists: MetaPhlAn
lists: Classifier for Metagenomic Sequences
lists: MapAl
lists: European Genome phenome Archive
lists: TemplateFilter
lists: Minia
lists: MiTCR
lists: M-pick
lists: CARMA
lists: SLIQ
lists: DNAPlotter
lists: AmphoraNet
lists: UPARSE
lists: SOPRA
lists: ESPRIT-Tree
lists: HPC-CLUST
lists: mirWIP
lists: SSPACE
lists: GoMapMan
lists: G-BLASTN
lists: SINA
lists: Bambus
lists: AGORA
lists: GRASS
lists: MIP Scaffolder
lists: Scarpa
lists: MBCluster.Seq
lists: cortex var
lists: Flux Simulator
lists: BEERS
lists: SNPeffect
lists: MMAPPR
lists: Cloudbreak
lists: comrad
lists: qSNP
lists: SomaticIndelDetector
lists: SomaticSniper
lists: aldex
lists: UnoSeq
lists: Traph
lists: RNA-SeQC
lists: PoPoolation TE
lists: RetroSeq
lists: T-lex
lists: SLIDE
lists: VFS
lists: Project HOPE
lists: PANTHER Evolutionary analysis of coding SNPs
lists: rQuant
lists: Naturejobs
lists: jobs.ac.uk
lists: ASOoViR
lists: RNA-eXpress
lists: MethPipe
lists: AnnTools
lists: AVIA
lists: CandiSNPer
lists: CHAoS
lists: COVA
lists: methylKit
lists: dbNSFP
lists: GESND
lists: VAGrENT
lists: Human Splicing Finder
lists: NGS-SNP
lists: Oncotator
lists: PHAge Search Tool
lists: SCAN
lists: SeqAnt
lists: SNPdat
lists: ORMAN
lists: FRCbam
lists: SNPdbe
lists: SnpEff
lists: SNPnexus
lists: SPOT - Biological prioritization after a SNP association study
lists: VARIANT
lists: ABSOLUTE
lists: ExPANdS
lists: HIVCD
lists: PathSeq
lists: READSCAN
lists: VirusFinder
lists: VirusSeq
lists: PredictHaplo
lists: QuRe
lists: ShoRAH
lists: V-Phaser 2
lists: NSMAP
lists: FlowSim
lists: SimRare
lists: SAMtools/BCFtools
lists: MiTie
lists: GeneTalk
lists: iReckon
lists: Genomic Datasharing
lists: IsoformEx
lists: IQSeq
lists: ERANGE
lists: FusionMap
lists: Bioinformatics(at)school
lists: PhenoMan
lists: Models of SHM Targeting and Substitution
lists: AGE
lists: Breakpointer
lists: CLEVER Toolkit
lists: Clippers
lists: CREST
lists: Indelocator
lists: GASVPro
lists: Hydra
lists: inGAP
lists: VelociMapper
lists: PEMer
lists: SPLITREAD
lists: SpliceSeq
lists: Scripture
lists: Omicsoft Sequence Aligner
lists: SOAPindel
lists: G-Mo.R-Se
lists: SEECER
lists: RSeQC
lists: SeqWare
lists: CloVR
lists: PolySearch
lists: MiRPara
lists: PIE the search
lists: miRdSNP
lists: Hmmer
lists: MuGeX
lists: SysCall
lists: KGGSeq
lists: MycoCosm
lists: EBIMed
lists: HighWire
lists: Coremine Medical
lists: Assembly Likelihood Estimator
lists: CoPub
lists: ABS filter
lists: NCBO Annotator
lists: CHANCE
lists: phantompeakqualtools
lists: CoIN
lists: SwissRegulon
lists: becas
lists: GEM
lists: Anne O'Tate
lists: (at)Note
lists: PeakSeq
lists: FaBox
lists: CoverageCalculator
lists: Spliceman
lists: Yabi
lists: footprintDB
lists: MolBioLib
lists: Moa
lists: PRISM (Stanford database)
lists: Knime4Bio
lists: Ergatis
lists: bioKepler
lists: Platypus
lists: PING
lists: Binding and Expression Target Analysis
lists: BioExtract
lists: Bio-Linux
lists: NeuroLex
lists: ChEA
lists: ChIPBase
lists: CistromeFinder
lists: pyDNase
lists: hmChIP
lists: HOCOMOCO
lists: PAZAR
lists: TFinDIT
lists: AtProbe
lists: DATFAP
lists: StSNP
lists: SolexaQA
lists: TOBFAC
lists: MapNext
lists: BSeQC
lists: SKIPPY
lists: SAMStat
lists: QC-Chain
lists: Bis-SNP
lists: Bisulfighter
lists: CpG MPs
lists: CyMATE
lists: GobyWeb
lists: Kismeth
lists: MethylExtract
lists: MethylViewer
lists: MLML
lists: MSC
lists: PRINSEQ
lists: NGSQC
lists: NGS QC Toolkit
lists: NextClip
lists: Geneious Microsatellite Plugin
lists: DistMap
lists: PRIMEGENS
lists: VDJ
lists: Bowtie
lists: CASHX
lists: CUSHAW
lists: CUSHAW2-GPU
lists: GNUMAP
lists: GSNAP
lists: Kraken
lists: Maq
lists: MOSAIK
lists: mrFAST
lists: NextGenMap
lists: ngsTools
lists: PASS
lists: Jellyfish
lists: TIGRFAMS
lists: Segemehl
lists: SeqMap
lists: SHRiMP
lists: WHAM
lists: SMALT
lists: Scalable Nucleotide Alignment Program
lists: SOAP3
lists: SOAPaligner/soap2
lists: Stampy
lists: TreQ
lists: IdCheck
lists: HTSeq
lists: Hadoop-BAM
lists: MACE
lists: Fulcrum
lists: FreClu
lists: FLASH
lists: FASTX-Toolkit
lists: Hiclib
lists: FastQC
lists: cd-hit-454
lists: CGAT
lists: ea-utils
lists: Genetic Testing Registry
lists: Ridom TraceEdit
lists: HiCUP
lists: TopoSNP
lists: TM4
lists: WebArrayDB
lists: Advanced Sequence Automated Pipeline
lists: Unipro UGENE
lists: SeqTrace
lists: MethylomeDB
lists: FinchTV
lists: DNA Chromatogram Explorer
lists: Chromaseq
lists: OXBench
lists: Sybil
lists: cancergrid-tma
lists: PathXL TMA
lists: Slidepath
lists: Stanford TMA Software
lists: TMA Navigator
lists: TMA-Combiner
lists: TMAJ
lists: X-Tile
lists: Bismark
lists: jMHC
lists: VAGUE
lists: Tractor db
lists: SAMtools Text Alignment Viewer
lists: snp-search
lists: TRANSFAC
lists: Systems Transcriptional Activity Reconstruction
lists: SPOT
lists: LookSeq
lists: Staden Package
lists: Maqview
lists: NGSView
lists: BS Seeker
lists: WISECONDOR
lists: MagicViewer
lists: Bambino
lists: Consed
lists: DiProGB
lists: BSMAP
lists: netClass
lists: BSmooth
lists: DMRforPairs
lists: SeqGSEA
lists: CLIPZ
lists: PePr
lists: MutationAssessor
lists: American College of Medical Genetics and Genomics
lists: Biopieces
lists: SNPsandGO
lists: Unified Human Interactome
lists: OLego
lists: PIPE-CLIP
lists: GoPubMed
lists: SPLINTER
lists: GraphProt
lists: Cascade
lists: PASSion
lists: JEPETTO
lists: dna-bison
lists: aLFQ
lists: BLESS
lists: VirHostNet: Virus-Host Network
lists: CAFE
lists: VirusMINT
lists: GNUMAP-BS
lists: MetaQC
lists: YuGene
lists: h5vc
lists: IQRray
lists: Yeast Search for Transcriptional Regulators And Consensus Tracking
lists: LAST
lists: ScerTF
lists: Tangram
lists: ClinVar
lists: estMOI
lists: FCROS
lists: WashU Epigenome Browser
lists: deepSNV
lists: OMPdb
lists: Rosalind
lists: pepStat
lists: PANOGA
lists: InterSpecies Analysing Application using Containers
lists: GeneTrail
lists: MEDIE
lists: DBM-DB
lists: SpliceDB
lists: RUVSeq
lists: Genomic Standards Consortium
lists: Galaxy
lists: VICUNA
lists: Lists2Networks
lists: PredictSNP
lists: ADGO
lists: KOBAS
lists: GeneTerm Linker
lists: Computational Genomics Analysis Tools
lists: Antibody Registry
lists: BHC
lists: Wigwams
lists: BETASEQ
lists: PhyloBayes
lists: MEGA-MD
lists: CGARS
lists: Magic
lists: epigenomix
lists: QCGWAS
lists: AbsCN-seq
lists: DupRecover
lists: Socrates
lists: CMGRN
lists: SNPdryad
lists: ALEA
lists: MSIsensor
lists: TSSer
lists: IRanges
lists: SILVA
lists: kFM-index
lists: Bioconductor
lists: CHASM/SNV-Box
lists: HTQC
lists: GeneNetworkBuilder
lists: Jalview
lists: SV-M
lists: Hereditary Hearing Loss Homepage
lists: ATRHUNTER
lists: seq crumbs
lists: Google App Engine
lists: COHCAP
lists: MethylSeekR
lists: SAAP-RRBS
lists: targetHub
lists: SRAdb
lists: Picard
lists: NGS-QC Generator
lists: ART
lists: HOMSTRAD - Homologous Structure Alignment Database
lists: DECIPHER
lists: GeneReviews
lists: GigaScience
lists: Leiden Open Variation Database
lists: DGIdb
lists: casper
lists: htSeqTools
lists: GWAMA
lists: Orphanet
lists: Ribosomal Database Project
lists: DroID - Drosophila Interactions Database
lists: BEDTools
lists: PROGENY
lists: APOLLOH
lists: TIGAR
lists: FLUX CAPACITOR
lists: ChIPXpress
lists: SpliceGrapher
lists: waviCGH
lists: Rice Genome Annotation
lists: DMEAS
lists: SoftSearch
lists: SToRM
lists: ALEXA-Seq
lists: methVisual
lists: DeconRNASeq
lists: Samscope
lists: AthaMap
lists: SpliceTrap
lists: Consensus CDS
lists: GARM
lists: Decombinator
lists: FDM
lists: fitGCP
lists: EDASeq
lists: Cscan
lists: Next-gen Sequencing Scaffolding Tool
lists: geNORM
lists: GASiC
lists: Ensembl Genomes
lists: Qudaich
lists: Nex-StoCT
lists: Virmid
lists: BIGpre
lists: mubiomics
lists: REDfly Regulatory Element Database for Drosophilia
lists: EBCall
lists: ENCODE
lists: GBS barcode splitter
lists: Sickle
lists: JointSNVMix
lists: RIPSeeker
lists: ShortRead
lists: TaxoAssignement
lists: mutationSeq
lists: QUASR
lists: simhtsd
lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation
lists: GBrowse
lists: seqbias
lists: EagleView
lists: HIA
lists: qrqc
lists: Genomes Unzipped
lists: eXpress
lists: ArtificialFastqGenerator
lists: BarraCUDA
lists: RazerS
lists: Therapeutic Target Database
lists: YeTFaSCo
lists: PrimerBank
lists: MORGAN
lists: CROP
lists: MeDUSA
lists: Arabidopsis Gene Regulatory Information Server
lists: SimSeq
lists: MetMap
lists: MIGen
lists: eDMR
lists: ProDom
lists: BAMStats
lists: CD-HIT-OTU
lists: microRNA.org
lists: Database of Genomic Variants
lists: DeconSeq
lists: Psort
lists: Kinetic Data of Bio-molecular Interaction
lists: PRODORIC
lists: Database of Poplar Transcription Factors
lists: BioRAT
lists: Database of Arabidopsis Transcription Factors
lists: RTPrimerDB- The Real-Time PCR and Probe Database
lists: Pripper
lists: COG
lists: Yeast Intron Database
lists: QDMR
lists: Haldanes Sieve
lists: Kevin's GATTACA World
lists: Next-Gen Sequencing
lists: Public Expression Profiling Resource
lists: EpiExplorer
lists: swDMR
lists: SEURAT
lists: EVORA
lists: Taipan
lists: GEB
lists: YM500
lists: peakrots
lists: Peakzilla
lists: ECgene: Gene Modeling with Alternative Splicing
lists: polyaPeak
lists: RSEG
lists: BigWig and BigBed
lists: DriverDB
lists: NECTAR
lists: miRGator
lists: BRIG
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lists: ClonalOrigin
lists: Clustal W2
lists: COILS: Prediction of Coiled Coil Regions in Proteins
lists: Concavity
lists: Cufflinks
lists: cwltool
lists: DIAMOND
lists: DISULFIND
lists: Database of Secondary Structure Assignments
lists: Eigensoft
lists: EMBOSS
lists: ESTScan
lists: FASTLINK
lists: FastQC
lists: FastTree
lists: FigTree
lists: Fsm-lite
lists: Gamgi
lists: Genome BioInformatics Research Lab - gff2ps
lists: Ghemical
lists: GIIRA
lists: GROMACS
lists: Gwyddion
lists: Bioinformatics Toolkit
lists: PyMOL
lists: Biopython
lists: PRESTO: Genetic Association Analysis Software
lists: CummeRbund
lists: ProtTest
lists: Prokka
lists: Computational Structural Biology Toolbox
lists: LEfSe
lists: jModelTest
lists: khmer
lists: Atac
lists: LAMARC
lists: FreeContact
lists: libRoadRunner
lists: TFBS
lists: MicrobiomeUtilities
lists: MINIMAC
lists: MultiQC
lists: Nanopolish
lists: IgBLAST
lists: PHYLIP
lists: PhyML
lists: Pilon
lists: ADEGENET
lists: phytools
lists: R/QTL
lists: RDKit: Open-Source Cheminformatics Software
lists: RepeatMasker
lists: SeaView
lists: SEER
lists: Seq-Gen
lists: StringTie
lists: THESIAS
lists: Transterm
lists: Vascular Modeling Toolkit
lists: Aegean
lists: andi
lists: Bandage
lists: Eagle
lists: BioJava Project
lists: Bio++
lists: BRAKER
lists: Bustools
lists: Centrifuge Classifier
lists: ChromHMM
lists: DeepNano
lists: Ecopcr
lists: Edtsurf
lists: E-mem
lists: Examl
lists: Falcon
lists: Fastaq
lists: Fastml
lists: Fastqtl
lists: FSA
lists: GARLI
lists: Garlic
lists: gdpc
lists: GenomeTools
lists: Gentle
lists: Gff2aplot
lists: gffread
lists: GraPhlAn
lists: Gubbins
lists: Harvest-tools
lists: HiLive
lists: Hinge
lists: HyPhy
lists: Indelible
lists: IQ TREE
lists: Fastahack
lists: Mash
lists: MEGAHIT
lists: Minimap2
lists: mosdepth
lists: MUMmer
lists: OptiType
lists: Phyutility
lists: Porechop
lists: QIIME2
lists: Racon
lists: Phangorn
lists: pheatmap
lists: Recognition of Errors in Assemblies using Paired Reads
lists: RELION
lists: Roary
lists: Salmon
lists: Scoary
lists: University of Zurich SCRM - Cell-and Tissue Biobank
lists: Seqtk
lists: Short Read Sequence Typing for Bacterial Pathogens
lists: Vmatch
lists: ABACAS
lists: AceDB
lists: tRNAscan-SE
lists: Antibody Resource Page
is related to: COnsensus-DEgenerate Hybride Oligonucleotide Primers
is related to: Classifier for Metagenomic Sequences
is related to: Pedigree-Draw
is related to: CAZy- Carbohydrate Active Enzyme
is related to: PolyPhen: Polymorphism Phenotyping
is related to: BioRAT
is related to: dChip Software
is related to: Rat Genome Database (RGD)
is related to: Comparative Toxicogenomics Database (CTD)
is related to: VISTA Enhancer Browser
is related to: affy
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PMID:25024350 |
THIS RESOURCE IS NO LONGER IN SERVICE |
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nlx_155571, r3d100012426 |
https://doi.org/10.17616/R3PJ3N |
http://omictools.com/ |
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SCR_002250 |
genOMIC tools |
2026-08-02 09:03:29 |
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