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URL: http://pgfe.umassmed.edu/ffs/
Proper Citation: FlyFactorSurvey (RRID:SCR_002113)
Description: Database of Drosophila transcription factor DNA binding specificity using the bacterial one-hybrid method, DNase I or SELEX methods. The database provides community access to recognition motifs and position weight matrices for transcription factors (TFs), including many unpublished motifs. Search tools and flat file downloads are provided to retrieve binding site information (as sequences, matrices and sequence logos) for individual TFs, groups of TFs or for all TFs with characterized binding specificities. Linked analysis tools allow users to identify motifs within the database that share similarity to a query matrix or to view the distribution of occurrences of an individual motif throughout the Drosophila genome. This database and its associated tools provide computational and experimental biologists with resources to predict interactions between Drosophila TFs and target cis-regulatory sequences.
Abbreviations: FlyFactorSurvey
Resource Type: data or information resource, database
Defining Citation: PMID:21097781
Keywords: transcription factor, motif, cis-regulatory module, transcription factor binding site, bio.tools
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University of Massachusetts Medical School; Massachusetts; USA |
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