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Resource Name

VFS

RRID:SCR_005138 RRID Copied

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VFS (RRID:SCR_005138)

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Resource Information

URL: http://sourceforge.net/projects/viralfusionseq/

Proper Citation: VFS (RRID:SCR_005138)

Description: A versatile high-throughput sequencing (HTS) tool for discovering viral integration events and reconstruct fusion transcripts at single-base resolution. It combines soft-clipping information, read-pair analysis, and targeted de novo assembly to discover and annotate viral-human fusion events. A simple yet effective empirical statistical model is used to evaluate the quality of fusion breakpoints. Minimal user defined parameters are required.

Abbreviations: VFS

Synonyms: ViralFusionSeq, ViralFusionSeq (VFS)

Resource Type: software resource

Defining Citation: PMID:23314323

Keywords: ubuntu, debian, high-throughput sequencing, virus, reconstruct, fusion transcript, transcript, integration, fusion, bio.tools

Availability: GNU General Public License, v3

Resource Name: VFS

Resource ID: SCR_005138

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This resource

is listed by	OMICtools
is listed by	Debian
is listed by	bio.tools
has parent organization	SourceForge
has parent organization	Chinese University of Hong Kong; Hong Kong; China

Usage and Citation Metrics

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Data and Source Information

Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400

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