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URL: http://recountdb.cbrc.jp/
Proper Citation: RecountDB (RRID:SCR_006117)
Description: THIS RESOURCE IS NO LONGER IN SERVICE, documented August 22, 2016. Database for corrected read counts and genome mapping on NCBI's Short Read Archive. The corrected count was done using RECOUNT and the mapping with LAST. We also provide information of reference genome to which we aligned the short reads. We focus on transcriptomic data, specifically TSS-Seq and RNA-Seq. Because this is the type of data for which sequence count correction is most important. Hence we do not include the genomic reads. The current version contains 2,265 entries from 45 organisms, with read lengths from 17 to 100bp. Via a searchable and browseable interface users can obtain corrected data in formats useful for transcriptomic analysis. We provide the data grouped according to the genome, type of studies and submitter in TAB , PSL and BAM format. They contain the mapping position and annotation of reads observed and corrected counts.
Abbreviations: RecountDB
Resource Type: data or information resource, database
Defining Citation: PMID:22139942
Keywords: read count, genome mapping, short read, genome, transcript, bio.tools
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National Institute of Advanced Industrial Science and Technology |
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