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Resource Name
EMAGE Gene Expression Database
RRID:SCR_005391 RRID Copied      
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EMAGE Gene Expression Database (RRID:SCR_005391)
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Resource Information

URL: http://www.emouseatlas.org/emage

Proper Citation: EMAGE Gene Expression Database (RRID:SCR_005391)

Description: A database of in situ gene expression data in the developing mouse embryo and an accompanying suite of tools to search and analyze the data. mRNA in situ hybridization, protein immunohistochemistry and transgenic reporter data is included. The data held is spatially annotated to a framework of 3D mouse embryo models produced by EMAP (e-Mouse Atlas Project). These spatial annotations allow users to query EMAGE by spatial pattern as well as by gene name, anatomy term or Gene Ontology (GO) term. The conceptual framework which houses the descriptions of the gene expression patterns in EMAGE is the EMAP Mouse Embryo Anatomy Atlas. This consists of a set of 3D virtual embryos at different stages of development, as well as an accompanying ontology of anatomical terms found at each stage. The raw data images can be conventional 2D photographs (of sections or wholemount specimens) or 3D images of wholemount specimens derived from Optical Projection Tomography (OPT) or confocal microscopy. Users may submit data using a Data submission tool or without.

Abbreviations: EMAGE

Synonyms: Emage (e-Mouse Atlas of Gene Expression), e-Mouse Atlas of Gene Expression

Resource Type: data repository, service resource, database, atlas, data or information resource, storage service resource

Defining Citation: PMID:19767607

Keywords: genetics, 3d model, anatomy, development, mouse morphology, molecular neuroanatomy resource, gene expression, in situ hybridization, immunohistochemistry, embryo, in situ reporter, embryonic mouse, optical projection tomography, confocal microscopy, annotation, pathway, gene association, protein, theiler stage, gene expression, embryology, dna, protein, protein-protein interaction, protein binding, gene, embryology, anatomy, genetics, bio.tools

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This resource

is listed by

re3data.org

is listed by

Debian

is listed by

bio.tools

is related to

HUDSEN Electronic Atlas of the Developing Human Brain

is related to

eMouseAtlas

is related to

eMouseAtlas

is related to

HUDSEN Human Gene Expression Spatial Database

is related to

aGEM

is related to

Eurexpress

is related to

Gene Expression Database

is related to

Gene Ontology

is related to

NIDDK Information Network (dkNET)

is related to

GUDMAP Ontology

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