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URL: http://abacas.sourceforge.net
Proper Citation: ABACAS (RRID:SCR_015852)
Description: Software that contiguates (align, order, orientate), visualizes and designs primers to close gaps on shotgun assembled contigs based on a reference sequence. ABACAS finds alignment positions and identifies syntenies of assembled contigs against the reference, then generates a pseudomolecule taking overlapping contigs and gaps into account.
Abbreviations: ABACAS
Synonyms: ABACAS: Algorithm Based Automatic Contiguation of Assembled Sequences, Algorithm Based Automatic Contiguation of Assembled Sequences (ABACAS), Algorithm Based Automatic Contiguation of Assembled Sequences
Resource Type: software resource, software application
Keywords: contiguation, primer, shotgun assembled contig, reference sequence, assembled sequence
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