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URL: https://github.com/veg/idepi
Proper Citation: IDEPI - IDentify EPItopes (RRID:SCR_016171)
Description: IDEPI is a domain-specific and extensible software library for supervised learning of models that relate genotype to phenotype for HIV-1 and other organisms. IDEPI makes use of open source libraries for machine learning (scikit- learn, scikit-learn.org/), sequence alignment (HMMER, hmmer.janelia.org/), sequence manipulation (BioPython, biopython.org), and parallelization (joblib, pythonhosted.org/joblib), and provides a programming interface to allow the users to engineer sequence features and select machine learning algorithms appropriate for their application.
Resource Type: software resource, software toolkit, software library
Defining Citation: PMID:25254639
Keywords: modeling, machine, learning, bio.tools
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