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URL: http://dbtss.hgc.jp/
Proper Citation: DBTSS: Database of Transcriptional Start Sites (RRID:SCR_002354)
Description: Database of transcriptional start sites (TSSs) representing exact positions in the genome based on a unique experimentally validated TSS sequencing method, TSS Seq. A major part of human adult and embryonic tissues are covered. DBTSS contains 491 million TSS tag sequences collected from a total of 20 tissues and 7 cell cultures. Also integrated is generated RNA-seq data of subcellular- fractionated RNAs and ChIP Seq data of histone modifications, RNA polymerase II and several transcriptional regulatory factors in cultured cell lines. Also included is external epigenomic data, such as chromatin map of the ENCODE project. They associated those TSS information with public and original SNV data, in order to identify single nucleotide variations (SNVs) in the regulatory regions.
Abbreviations: DBTSS
Synonyms: DBTSS: Database of Transcriptional Start Sites, DataBase of Transcriptional Start Sites
Resource Type: data or information resource, database
Defining Citation: PMID:22086958, PMID:19910371, PMID:17942421, PMID:16381981, PMID:14681363, PMID:11752328
Keywords: cdna, cdna library, transcriptional start site, transcriptome, transcriptome analysis, tss-seq, genome, adult human, embryonic, cell, rna-seq, subcellular, rna, chip seq data, histone modification, rna polymerase ii, transcriptional regulatory factor, cell line, single nucleotide variation, regulatory region, genetic valuation, transcriptional regulation, bio.tools, FASEB list
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