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URL: https://github.com/fbreitwieser/pavian
Proper Citation: Pavian (RRID:SCR_016679)
Description: Software R package for interactive analysis of metagenomics classification results with a special focus on infectious disease diagnosis. Used for analyzing and visualization of metagenomics classification results from classifiers such as Kraken, Centrifuge and MetaPhlAn. Provides an alignment viewer for validation of matches to a particular genome.
Resource Type: analysis service resource, data analysis service, production service resource, service resource, software resource, web application
Defining Citation: DOI:10.1101/084715
Keywords: interactive, analysis, metagenomics, classification, result, infectious, disease, diagnosis, data, visualization, bio.tools
Funding: NHGRI R01 HG006677; NIGMS R01 GM083873; U. S. Army Research Office W911NF1410490
Availability: Free, Freely available
Resource Name: Pavian
Resource ID: SCR_016679
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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