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URL: http://compbio.mit.edu/ChromHMM/
Proper Citation: ChromHMM (RRID:SCR_018141)
Description: Software tool for chromatin state discovery and characterization. Used for chromatin state discovery and genome annotation of non coding genome using epigenomic information across one or multiple cell types. Combines multiple genome wide epigenomic maps, and uses combinatorial and spatial mark patterns to infer complete annotation for each cell type. Provides automated enrichment analysis of resulting annotations.
Resource Type: data analysis software, data processing software, software resource, software application
Defining Citation: PMID:29120462, PMID:22373907
Keywords: Chromatin state discovery, chromatin characterization, genome annotation, non coding genome, epigenomic, cell, annotation, analysis, pattern
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