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Resource Summary Report New Search

Resource Name

VARSCAN

RRID:SCR_006849 RRID Copied

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VARSCAN (RRID:SCR_006849)

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Resource Information

URL: http://tvap.genome.wustl.edu/tools/varscan/

Proper Citation: VARSCAN (RRID:SCR_006849)

Description: THIS RESOURCE IS NO LONGER IN SERVICE. Documented on March 7,2024. Platform-independent, technology-independent software tool for identifying SNPs and indels in massively parallel sequencing of individual and pooled samples. Given data for a single sample, VarScan identifies and filters germline variants based on read counts, base quality, and allele frequency. Given data for a tumor-normal pair, VarScan also determines the somatic status of each variant (Germline, Somatic, or LOH) by comparing read counts between samples. (entry from Genetic Analysis Software)

Abbreviations: VarScan

Synonyms: Varscan2, VarScan - variant detection in massively parallel sequencing data, Varscan

Resource Type: software resource, software application

Defining Citation: PMID:22300766, PMID:19542151, DOI:10.1101/gr.129684.111

Keywords: gene, genetic, genomic, java, illumina, solid, life/pgm, roche/454, next-generation sequencing, variant, mutation caller, exome, whole-genome, snp, copy number alteration, somatic mutation, subclonal mutation, mutation, bio.tools

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This resource

is listed by	OMICtools
is listed by	Genetic Analysis Software
is listed by	Debian
is listed by	bio.tools
has parent organization	SourceForge
has parent organization	Washington University in St. Louis; Missouri; USA

Usage and Citation Metrics

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Data and Source Information

Source: SciCrunch Registry

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