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URL: http://campagnelab.org/software/gobyweb/
Proper Citation: GobyWeb (RRID:SCR_005443)
Description: Web application that facilitates the management and analysis of high-throughput sequencing (HTS) data. In the back-end, it uses the Goby framework, BWA, STAR, Last, GSNAP, Samtools, VCF-tools, along with a cluster of servers to provide rapid alignment and efficient analyses. GobyWeb makes it possible to analyze hundreds of samples in consistent ways without having to use command line tools. GobyWeb provides tools that streamline frequent data analyses for RNA-Seq, Methyl-Seq, RRBS, or DNA-Seq datasets and to enable teams of investigators to share reads and results of analyses. GobyWeb can be extended for new analyses by developing plugins.
Abbreviations: GobyWeb
Resource Type: software resource
Defining Citation: PMID:23936070
Keywords: high-throughput sequencing, gene expression, dna methylation, sequencing, bio.tools
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