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Proper Citation: RDPipeline (RRID:SCR_001192)
Description: Software to simplify the processing of large rRNA sequence libraries (including single-strand and paired-end reads) obtained through high-throughput sequencing technology. Tools for assembly, quality filtering, taxonomy based analysis and taxonomy independent analysis tools, and tools to convert the data to formats suitable for common ecological and statistical packages are available. For extremely large datasets, command line tools are available.
Abbreviations: RDPipeline
Synonyms: RDP Pipeline, RDP Amplicon Sequence Pipeline
Resource Type: data processing software, software application, software resource
Defining Citation: PMID:24288368
Keywords: amplicon sequencing, high-throughput sequencing, rrna, assembly, quality filtering, taxonomy, analysis, FASEB list
Availability: THIS RESOURCE IS NO LONGER IN SERVICE
Resource Name: RDPipeline
Resource ID: SCR_001192
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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