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URL: http://metaphyler.cbcb.umd.edu/
Proper Citation: MetaPhyler (RRID:SCR_004848)
Description: A taxonomic classifier for metagenomic shotgun reads, which uses phylogenetic marker genes as a taxonomic reference. The classifier, based on BLAST, uses different thresholds (automatically learned from the reference database) for each combination of taxonomic rank, reference gene, and sequence length. The reference database includes marker genes from all complete genomes, several draft genomes and the NCBI nr protein database.
Synonyms: MetaPhyler - Estimating Bacterial Composition from Metagenomic Sequences
Resource Type: software resource
Defining Citation: PMID:21989143
Keywords: metagenome, classification, sequence, taxonomy, genome, microbiome, bio.tools
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