Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
URL: http://ccb.jhu.edu/software/tophat/index.shtml
Proper Citation: TopHat (RRID:SCR_013035)
Description: Software tool for fast and high throughput alignment of shotgun cDNA sequencing reads generated by transcriptomics technologies. Fast splice junction mapper for RNA-Seq reads. Aligns RNA-Seq reads to mammalian-sized genomes using ultra high-throughput short read aligner Bowtie, and then analyzes mapping results to identify splice junctions between exons.TopHat2 is accurate alignment of transcriptomes in presence of insertions, deletions and gene fusions.
Synonyms: tophat, TopHat1, Tophat2
Resource Type: data processing software, sequence analysis software, software resource, data analysis software, image analysis software, alignment software, software application
Defining Citation: PMID:23618408, PMID:19289445, DOI:10.1093/bioinformatics/btp120
Keywords: align, RNA-Seq, read, cDNA, sequencing, transcriptomics, fast, splice, junction, mapper, exon, analysis, bio.tools
Expand Alluses |
|
is used by |
|
is listed by |
|
is listed by |
|
is listed by |
|
is listed by |
|
is related to |
|
has parent organization |
|
has parent organization |
|
has parent organization |
|
has parent organization |
|
works with |
We found {{ ctrl2.mentions.total_count }} mentions in open access literature.
We have not found any literature mentions for this resource.
We are searching literature mentions for this resource.
Most recent articles:
{{ mention._source.dc.creators[0].familyName }} {{ mention._source.dc.creators[0].initials }}, et al. ({{ mention._source.dc.publicationYear }}) {{ mention._source.dc.title }} {{ mention._source.dc.publishers[0].name }}, {{ mention._source.dc.publishers[0].volume }}({{ mention._source.dc.publishers[0].issue }}), {{ mention._source.dc.publishers[0].pagination }}. (PMID:{{ mention._id.replace('PMID:', '') }})
A list of researchers who have used the resource and an author search tool
A list of researchers who have used the resource and an author search tool. This is available for resources that have literature mentions.
No alerts have been found for TopHat.
Source: SciCrunch Registry