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URL: https://github.com/santeripuranen/SpydrPick
Proper Citation: SpydrPick (RRID:SCR_018176)
Description: Software command line tool for performing direct coupling analysis of aligned categorical datasets. Used for analysis at scale of pan genomes of many bacteria. Incorporates correction for population structure, which adjusts for phylogenetic signal in data without requiring explicit phylogenetic tree.
Resource Type: data analysis software, data processing software, software application, software resource
Defining Citation: PMID:31361894
Keywords: Direct coupling analysis, aligned categorical datasets, analysis, genome, bacteria, phylogenetic signal, correction, phylogenetic tree, data, bio.tools
Funding: COIN Center of Excellence ; Academy of Finland ; European Research Council ; Wellcome Trust
Availability: Free, Available for download, Freely available
Resource Name: SpydrPick
Resource ID: SCR_018176
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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