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URL: http://www.broadinstitute.org/genome_bio/siphy/
Proper Citation: SiPhy (RRID:SCR_000564)
Description: Software that implements rigorous statistical tests to detect bases under selection from a multiple alignment data. It takes full advantage of deeply sequenced phylogenies to estimate both unlikely substitution patterns as well as slowdowns or accelerations in mutation rates. It can be applied as an Hidden Markov Model (HMM), in sliding windows, or to specific regions.
Abbreviations: SiPhy
Resource Type: sequence analysis resource
Defining Citation: PMID:19478016
Keywords: java, mutation, phylogeny, substitution pattern, mutation rate
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