SPM
Resource Report
Resource Website
5000+ mentions
Issue
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SPM (RRID:SCR_007037)
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SPM
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data analysis software, data processing software, image analysis software, software application, software resource
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Software package for analysis of brain imaging data sequences. Sequences can be a series of images from different cohorts, or time-series from same subject. Current release is designed for analysis of fMRI, PET, SPECT, EEG and MEG.
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analysis, brain, imaging, data, sequence, fMRI, PET, SPECT, EEG, MEG, bio.tools
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uses: Neuroimaging Data Model
uses: imcalc: SPM batch image calculator
is used by: rsfMRI_fconn calculation
is used by: Automatic Analysis
is used by: auto_acpc_reorient
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: 3DVC
is listed by: Debian
is listed by: bio.tools
is listed by: SoftCite
is affiliated with: Clinical Toolbox for SPM
is affiliated with: Statistical non-Parametric Mapping
is related to: WFU Biological Parametric Mapping Toolbox
is related to: vis: SPM Visualized Statistics toolbox
is related to: LEAD-DBS
is related to: CCHMC Pediatric Brain Templates
is related to: IBMA toolbox
is related to: ArtRepair for robust fMRI
is related to: ASL data processing tool box
is related to: BrainVISA / Anatomist
is related to: MRIcro Software
is related to: xjView: A Viewing Program For SPM
is related to: BrainMagix SPM Viewer
is related to: MarsBaR region of interest toolbox for SPM
is related to: NIRS-SPM
is related to: SPM SS - fMRI functional localizers
is related to: Wisconsin White Matter Hyperintensities Segmentation Toolbox
is related to: Dementia-specific FDG PET Template for SPM analyses
is related to: SPM Anatomy Toolbox
is related to: MIPAV: Medical Image Processing and Visualization
is related to: MATLAB
is related to: hMRI-toolbox
is related to: Sandwich Estimator Toolbox
has parent organization: University College London; London; United Kingdom
is required by: MRTool
provides: TSDiffAna
has plug in: ICN_Atlas
works with: UManitoba - JHU Functionally Defined Human White Matter Atlas
works with: NIAG Addiction Data
works with: ICN_Atlas
works with: spm_auto_reorient_coregister
works with: Computational Anatomy Toolbox for SPM
works with: FieldTrip
works with: POAS4SPM
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Free, Available for download, Freely available |
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biotools:SPM |
https://github.com/spm/spm12, https://bio.tools/SPM |
https://www.fil.ion.ucl.ac.uk/spm/ |
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SCR_007037 |
SciCrunch Registry |
Statistical Parametric Mapping, SPM5, SPM2, SPM12, Statistical Parametric Mapping Software, SPM99, SPM8, SPM, SPM96 |
2026-09-26 02:17:12 |
8748 |
MRIcro Software
Resource Report
Resource Website
500+ mentions
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MRIcro Software (RRID:SCR_008264)
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data analysis software, data processing software, data visualization software, software application, software resource
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MRIcro allows Windows and Linux computers view medical images. It is a standalone program, but includes tools to complement SPM (software that allows neuroimagers to analyze MRI, fMRI and PET images). MRIcro allows efficient viewing and exporting of brain images. In addition, it allows neuropsychologists to identify regions of interest (ROIs, e.g. lesions). MRIcro can create Analyze format headers for exporting brain images to other platforms. Some features of MRIcro are: - Converts medical images to SPM friendly Analyze format. - View Analyze format images (big or little endian). - Create Analyze format headers (big or little endian). - Create 3D regions of interest (with computed volume & intensity). - Overlap multiple regions of interest. - Rotate images to match SPM template images. - Export images to BMP, JPEG, PNG or TIF format. - Yoked images: linked viewing of multiple images (e.g. view same coordinates of PET and MRI scans). Users familiar with other Windows programs will find that this software is fairly straightforward to use. Resting the mouse cursor over a button will cause a text hint to appear over the button. However, a tutorial with a step by step guide of how to use MRIcro with SPM is available.
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export, fmri, 3d, brain, intensity, lesions, medical, mri, neuroimager, neuropsychologist, pet, platform, region, software, view, volume, image
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is related to: SPM
has parent organization: Georgia Institute of Technology; Georgia; USA
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nif-0000-23298 |
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SCR_008264 |
SciCrunch Registry |
MRIcro |
2026-09-26 02:14:24 |
910 |
NIRS-SPM
Resource Report
Resource Website
100+ mentions
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NIRS-SPM (RRID:SCR_009630)
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NIRS-SPM
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data analysis software, data processing software, software application, software resource
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A SPM and MATLAB-based software package for statistical analysis of near-infrared spectroscopy (NIRS) signals. Based on the general linear model (GLM), and Sun's tube formula / Lipschitz-Killing curvature (LKC) based expected Euler characteristics, NIRS-SPM not only provides activation maps of oxy-, deoxy-, and total-hemoglobin, but also allows for super-resolution activation localization. Additional features, including a wavelet-minimum description length detrending algorithm and cerebral metabolic rate of oxygen (CMRO2) estimation without hypercapnia, were implemented in the NIRS-SPM software package., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
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optical imaging, near-infrared spectroscopy, spm, matlab
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is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: SPM
has parent organization: Korea Advanced Institute of Science and Technology; Daejeon; South Korea
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THIS RESOURCE IS NO LONGER IN SERVICE |
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nlx_155885 |
http://www.nitrc.org/projects/nirs_spm |
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SCR_009630 |
SciCrunch Registry |
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2026-09-26 02:14:36 |
137 |
BrainMagix SPM Viewer
Resource Report
Resource Website
1+ mentions
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BrainMagix SPM Viewer (RRID:SCR_009537)
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BrainMagix SPM Viewer
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data processing software, data visualization software, software application, software resource
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A free, professional viewer for SPM fMRI results. SPM (Statistical Parametric Mapping, UCL, London) is a powerful fMRI analysis software but its visualization capabilities are sometimes a limitation for the researchers. That's why Imagilys has decided to offer the neuroimaging community a free version of its commercial "BrainMagix" neuroimaging software, called "BrainMagix SPM viewer". BrainMagix SPM Viewer's Features - Professional viewer for your SPM-based fMRI activations - JAVA-programmed, cross-platform (Windows, MAC, Linux), without Matlab license, making it possible to share your results with colleagues who do not have SPM installed - Reads SPM.mat files and NIfTI images in an user-friendly way - Overlay the blobs with an atlas or any anatomical image - On the fly adjustment of threshold and cluster size - Localize your activations in an atlas - BOLD signal curves in ROIs (future feature) - Export your results as PNG images
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java, magnetic resonance, nifti, os independent, visualization, statistical parametric mapping, fmri
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is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: SPM
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Other/Commercial license License, Free |
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nlx_155714 |
http://www.nitrc.org/projects/bm_spm_viewer |
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SCR_009537 |
SciCrunch Registry |
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2026-09-26 02:14:34 |
1 |
Dementia-specific FDG PET Template for SPM analyses
Resource Report
Resource Website
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Dementia-specific FDG PET Template for SPM analyses (RRID:SCR_010465)
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software resource
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This is a place holder for this tool. The documentation is not yet available (documented 5/30/2014).
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pet, resource:spm
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is related to: SPM
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nlx_157694 |
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SCR_010465 |
SciCrunch Registry |
Dementia-specific [18F]-FDG-PET Template for SPM analyses |
2026-09-26 02:14:39 |
0 |
POAS4SPM
Resource Report
Resource Website
1+ mentions
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POAS4SPM (RRID:SCR_010469)
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POAS4SPM
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software resource
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Software toolbox for SPM to denoise diffusion MRI data. Used for diffusion weighted magnetic resonance imaging data enhancement based on structural adaptive smoothing in both voxel space and diffusion-gradient space.Part of the ACID-toolbox.
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denoise diffusion MRI data, diffusion weighted, magnetic resonance imaging data, MRI data,
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is related to: ACID
works with: SPM
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Deutsche Forschungsgemeinschaft ;
Wellcome Trust |
PMID:24993814 |
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nlx_157718 |
http://www.diffusiontools.com/ |
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SCR_010469 |
SciCrunch Registry |
Position Orientation Adaptive Smoothing for SPM |
2026-09-26 02:14:39 |
9 |
WFU Biological Parametric Mapping Toolbox
Resource Report
Resource Website
1+ mentions
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WFU Biological Parametric Mapping Toolbox (RRID:SCR_002613)
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WFU_BPM, WFU BPM
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data processing software, image analysis software, software application, software resource, software toolkit
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Software toolbox that performs SPM analysis with voxel-wise imaging covariates. The BPM toolbox incorporates information obtained from other modalities as regressors in a voxel-wise analysis, thereby permitting investigation of more sophisticated hypotheses. The BPM toolbox has been developed in Matlab with a user-friendly interface for performing analyses, including voxel-wise multimodal correlation, ANCOVA, and multiple regression. It has a high degree of integration with the SPM (statistical parametric mapping) software relying on it for visualization and statistical inference. Furthermore, statistical inference for a correlation field, rather than a widely used T-field, has been implemented in the correlation analysis for more accurate results. Requirements: * SPM2 or SPM5 * MATLAB version 6.5 or higher
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analyze, matlab, microsoft, magnetic resonance, nifti, posix/unix-like, statistical operation, win32 (ms windows), windows
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is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: SPM
has parent organization: Wake Forest School of Medicine; North Carolina; USA
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Human Brain Project ;
NIBIB 1R01EB004673 |
PMID:17070709 |
Free, Available for download, Freely available |
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nlx_156016 |
http://www.nitrc.org/projects/wfu_bpm |
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SCR_002613 |
SciCrunch Registry |
BPM - Integrated Tool for Biological Parametric Mapping, WFU Biological Parametric Mapping, BPM toolbox, BPM |
2026-09-26 02:13:14 |
4 |
Statistical non-Parametric Mapping
Resource Report
Resource Website
50+ mentions
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Statistical non-Parametric Mapping (RRID:SCR_002092)
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SnPM
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data processing software, software application, software resource, software toolkit
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A toolbox for Statistical Parametric Mapping (SPM) that provides an extensible framework for voxel level non-parametric permutation/randomization tests of functional Neuroimaging experiments with independent observations. SnPM uses the General Linear Model to construct pseudo t-statistic images, which are then assessed for significance using a standard non-parametric multiple comparisons procedure based on randomization/permutation testing. It is most suitable for single subject PET/SPECT analyses, or designs with low degrees of freedom available for variance estimation. In these situations the freedom to use weighted locally pooled variance estimates, or variance smoothing, makes the non-parametric approach considerably more powerful than conventional parametric approaches, as are implemented in SPM. Further, the non-parametric approach is always valid, given only minimal assumptions. The SnPM toolbox provides an alternative to the Statistics section of SPM.
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analyze, linear, linux, macos, matlab, microsoft, magnetic resonance, nifti, posix/unix-like, regression, statistical operation, sunos/solaris, windows, statistical parametric mapping, pet, spect
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is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is affiliated with: SPM
has parent organization: University of Michigan; Ann Arbor; USA
has parent organization: University of Warwick; Coventry; United Kingdom
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Human Brain Project |
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THIS RESOURCE IS NO LONGER IN SERVICE |
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nif-0000-00342 |
http://www.nitrc.org/projects/snpm |
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SCR_002092 |
SciCrunch Registry |
SnPM: Statistical nonParametric Mapping, SnPM - Statistical NonParametric Mapping - A toolbox for SPM, Statistical nonParametric Mapping |
2026-09-26 02:17:40 |
95 |
ASL data processing tool box
Resource Report
Resource Website
1+ mentions
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ASL data processing tool box (RRID:SCR_005997)
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data processing software, software application, software resource, software toolkit
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Tool box for arterial spin labeled perfusion MRI data processing. It is based on SPM and Matlab. More detailed documentation can be found in asl_perf_subtract.m, the main function for calculating CBF value. It supports 3D or 4D Analyze or Nifiti format and PASL, CASL, and PCASL data. It contains the code for calculating CBF and a set of SPM batch scripts for preprocessing and statistical analysis.
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quantification, statistical operation, spm, arterial spin label, perfusion, mri, matlab, magnetic resonance
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is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: SPM
is related to: ASL spm8
has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA
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GNU General Public License |
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nlx_151371 |
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SCR_005997 |
SciCrunch Registry |
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2026-09-26 02:17:44 |
3 |
hMRI-toolbox
Resource Report
Resource Website
10+ mentions
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hMRI-toolbox (RRID:SCR_017682)
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data processing software, software application, software resource, software toolkit
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Software toolbox for quantitative MRI in neuroscience and clinical research. Open source and flexible tool for qMRI data handling and processing. Allows estimation of high quality multi parameter qMRI maps followed by spatial registration in common space for statistical analysis.
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Quantitative, MRI, data, processing, multi, parameter, qMRI, map, spatial, registration, statistical, analysis, histology, longitudinal, relaxation, rate R1 and R2, proton, density, magnetisation, transfer, MT saturation
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is related to: MATLAB
is related to: SPM
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Belgian Walloon Government ;
Emory Universitys Research Council ;
European Regional Development Fund ;
European Research Council ;
European Structural and Investment Fund ;
German Research Foundation ;
Leenaards Foundation ;
Roger De Spoelberch Foundation ;
Swedish Research Council ;
Swiss National Science Foundation ;
Swiss State Secretariat for Education ;
Research and Innovation ;
Wellcome Trust |
DOI:10.1016/j.neuroimage.2019.01.029 |
Free, Available for download, Freely available |
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https://github.com/hMRI-group/hMRI-toolbox |
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SCR_017682 |
SciCrunch Registry |
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2026-09-26 02:17:54 |
37 |
TSDiffAna
Resource Report
Resource Website
1+ mentions
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TSDiffAna (RRID:SCR_016656)
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data analysis software, data processing software, image analysis software, software application, software resource
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Software tool developed for Statistical Parametric Mapping (SPM) that computes slicewise scan by scan difference and standard deviations. Used to examine quality of image timeseries.
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SPM, statistical, parametiric, mapping, slicewise, scan, difference, standard, deviation, quality, image, neuroimaging, data
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has parent organization: University College London; London; United Kingdom
is provided by: SPM
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Free, Available for download, Freely available |
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https://sourceforge.net/projects/tsdiffana.spmtools.p/ |
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SCR_016656 |
SciCrunch Registry |
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2026-09-26 02:17:14 |
2 |
SoftCite
Resource Report
Resource Website
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SoftCite (RRID:SCR_024411)
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data or information resource, knowledge base, portal, project portal, software resource
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Gold standard dataset of software mentions in research publications. Provides dataset of annotated software mentions from full text academic literature in biomedicine and economics directly converted from published PDFs with reproducible infrastructure. Includes provenance, and is formatted for immediately usefulness in NLP. Useful for supervised learning at scale.
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Gold standard dataset, software mentions, research publications, annotated software mentions, full text academic literature,
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lists: ProteinPilot
lists: ROCit
lists: survivalROC
lists: GIFT
lists: PyWavelets
lists: pRRophetic
lists: GOplot
lists: Rgdal
lists: riskRegression
lists: RNAfold
lists: RNALocate
lists: pyPCcazip
lists: ScanProsite
lists: RapGreen
lists: ABySS
lists: AMBER
lists: ANNOVAR
lists: ASAP
lists: ASPicDB
lists: AStalavista
lists: ATSAS
lists: Alien hunter
lists: Adobe Photoshop
lists: Affymetrix
lists: Augustus
lists: Argus
lists: Adobe Illustrator
lists: ART
lists: AutoDock Vina
lists: AutoDock
lists: ANALYZE
lists: BLASTClust
lists: arrayQualityMetrics
lists: BLASTN
lists: BLASTX
lists: BLASTP
lists: Bowtie
lists: Autogrid
lists: BRB-ArrayTools
lists: BEDTools
lists: BWA
lists: BioEdit
lists: BRASS
lists: Bioconductor
lists: BioExtract
lists: BaCelLo
lists: BioMoby
lists: Brain Extraction Tool
lists: Bowtie 2
lists: BoxPlotR
lists: biomaRt
lists: BioPerl
lists: CANGS
lists: CFX Manager
lists: CEAS
lists: BlobFinder
lists: CLC Genomics Workbench
lists: BREAKDANCER
lists: CASAVA
lists: CLC Main Workbench
lists: ClustalW
lists: Clustal W2
lists: ComBat
lists: CCP4
lists: Blender
lists: Coot
lists: CGView
lists: COMSOL Multiphysics
lists: CTFFIND
lists: CalcuSyn
lists: ChIPpeakAnno
lists: Chimera
lists: CVODE
lists: DAVID
lists: Cufflinks
lists: caret
lists: ClueGO
lists: Cluster
lists: Clocklab
lists: DIANA-mirPath
lists: Cytoscape
lists: EMAN
lists: E-Prime
lists: DESeq2
lists: Definiens Developer XD
lists: Eigensoft
lists: EMBOSS
lists: Ensembl
lists: DIALIGN
lists: Design-Expert
lists: EndNote
lists: CMAP
lists: EEGLAB
lists: CMap
lists: Epi Info
lists: FASTA
lists: Ensembl Genome Browser
lists: Epik
lists: FACS
lists: FCS Express
lists: Flowlogic
lists: FSL
lists: FLASH
lists: FATCAT
lists: FastQC
lists: G*Power
lists: GOLD
lists: FGENESH
lists: FreeSurfer
lists: FlowJo
lists: GeneTools
lists: Galaxy
lists: GATK
lists: ELDA
lists: GraphPad
lists: GRADEpro
lists: Fiji
lists: Gblocks
lists: FigTree
lists: GENIE
lists: GBrowse
lists: Gemma
lists: GeneChip Operating Software
lists: GeneMapper
lists: GeneMarker
lists: GenABEL
lists: GenePattern
lists: GraphPad Prism
lists: GenePix Pro
lists: Google
lists: Genesis
lists: Hologic
lists: GeneSpring GX
lists: GeneVenn
lists: HaploReg
lists: Google Scholar
lists: HALO
lists: Gwyddion
lists: IMAGIC
lists: HKL-2000
lists: Glide
lists: Glimmer
lists: I-TASSER
lists: GenomeStudio
lists: IMOD
lists: Haploview
lists: Hmmer
lists: Hydra
lists: IUPRED
lists: HomeCageScan
lists: Geneious
lists: IGOR Pro
lists: IMPUTE
lists: Infernal
lists: Image-Pro Plus
lists: JASP
lists: LSM Image Examiner
lists: Imaris
lists: Image Pro Plus
lists: ImageQuant
lists: ImageJ
lists: Integrative Genomics Viewer
lists: jcvi
lists: InterProScan
lists: KaleidaGraph
lists: Ligprep
lists: Heidelberg Eye Explorer
lists: JMP
lists: Ingenuity Pathways Knowledge Base
lists: Leica QWin
lists: JCB DataViewer
lists: Jalview
lists: LigandScout
lists: Ingenuity Pathway Analysis
lists: LabView
lists: Kepler
lists: MAFFT
lists: Jmol
lists: ImageScope
lists: MACS
lists: Maq
lists: MUMmer
lists: MATLAB
lists: Mimics
lists: MACH
lists: MCODE
lists: Mascot
lists: Maestro
lists: MSQuant
lists: MediaWiki
lists: MINC
lists: MRIcron
lists: MOE
lists: ModFit LT
lists: LIMMA
lists: MassLynx
lists: mitopred
lists: MrBayes
lists: MolProbity
lists: MUSCLE
lists: MutationAssessor
lists: MaxQuant
lists: Minitab
lists: MODELLER
lists: MetaboAnalyst
lists: MedCalc
lists: Origin
lists: MPlus
lists: MutationTaster
lists: MuTect
lists: Multi Gauge
lists: NIA Array Analysis
lists: NIH Image
lists: Phenix
lists: MycoBank
lists: OpenClinica
lists: Nexus
lists: OMTools
lists: NIS-Elements
lists: PAST
lists: NVivo
lists: PRISM (Stanford database)
lists: Metscape
lists: PROCHECK
lists: oligo
lists: OpenEpi
lists: Pathway Commons
lists: Nanoparticle Tracking Analysis
lists: Openlab
lists: PLINK
lists: PAUP
lists: NONMEM
lists: PREFAB
lists: NetworkX
lists: PeptideProphet
lists: Primer Designer
lists: PhyML
lists: PASS
lists: PyMOL
lists: PSIPRED
lists: PROFILER
lists: PHYLIP
lists: Phobius
lists: Prime
lists: Phyutility
lists: Picard
lists: ProteinProphet
lists: Phaser
lists: ProSAS
lists: PostgreSQL
lists: Primer-BLAST
lists: ProteinLynx Global Server
lists: QUANTO
lists: Primer Express
lists: Primer3Plus
lists: ProtTest
lists: ProbCons
lists: Primer3
lists: Poretools
lists: Protein preparation Wizard
lists: QmRLFS-finder
lists: PicTar
lists: RevMan
lists: Pipeline Pilot
lists: QIIME
lists: PRISMA
lists: REDCap
lists: RAxML
lists: Proteome Discoverer
lists: Research Randomizer
lists: SPARTAN
lists: SPSS
lists: RNAstructure
lists: Refmac
lists: QuantPrime
lists: Prodigal
lists: RepeatModeler
lists: Ringo
lists: SQLite
lists: SAGE
lists: Rhinoceros
lists: SAMTOOLS
lists: SPAdes
lists: RepeatMasker
lists: SEDFIT
lists: STATISTICA
lists: RNAhybrid
lists: SlideBook
lists: STRUCTURE
lists: SABmark
lists: SPM
lists: Stata
lists: RStudio
lists: SciPy
lists: Scion Image
lists: Simulink
lists: TAGGER
lists: TopHat
lists: SAM
lists: ShortRead
lists: SIFT
lists: SCAN
lists: SignalP
lists: Scopus
lists: Strelka2
lists: Trans-ABySS
lists: Statgraphics Centurion
lists: T-Coffee
lists: Statistical Analysis System
lists: TargetScan
lists: UCHIME
lists: Sequencher
lists: SigmaStat
lists: UCSC Genome Browser
lists: affy
lists: Taverna
lists: MBF BioScience: Stereo Investigator
lists: Trimmomatic
lists: Vmatch
lists: WFU PickAtlas
lists: SigmaPlot
lists: X!Tandem
lists: STAR
lists: TASSEL
lists: SyStat
lists: WEBLOGO
lists: UCSF Chimera
lists: TreeView
lists: pheatmap
lists: WinWCP
lists: microRNA.org
lists: glmnet
lists: Phenix.refine
lists: BASE
lists: beadarray
lists: RMS
lists: lumi
lists: Web of Science
lists: minfi
lists: geNORM
lists: WU-BLAST
lists: WinBUGS
lists: SPP
lists: tRNAscan-SE
lists: WebPlotDigitizer
lists: qBasePLUS
lists: Matplotlib
lists: TreeBASE
lists: pClamp
lists: TBLASTN
lists: igraph
lists: V3D
lists: survival
lists: miRanda
lists: piRNABank
lists: topGO
lists: NGmerge
lists: OMNISEC
lists: NOTUNG
lists: OpenBUGS
lists: Optimization Toolbox
lists: ProgRes Capture Pro
lists: Ocular
lists: Umediation
lists: Nano Measurer
lists: PHYLDOG
lists: VSEARCH
lists: WinNonlin
lists: WHONET
lists: ToposPro
lists: Treerecs
lists: Agilent Seahorse Wave
lists: SimPhy
lists: TomoStudio
lists: Mutation Assessor
lists: Stem
lists: SRAMP
lists: CRISPResso2
lists: geepack
lists: Evalue
lists: DAGitty
lists: FastMulRFS
lists: ggridges
lists: gamm4
lists: AutoRT
lists: CopyKAT
lists: Inference of CRISPR Edits
lists: classInt
lists: ASTRAL-Pro
lists: maftools
lists: mitml
lists: CMplot
lists: MetaPSICOV
lists: LaCyTools
lists: MADOKA
lists: Kaplan Meier Plotter
lists: IntFOLD
lists: ModFOLD
lists: lDDT
has parent organization: University of Texas at Austin; Texas; USA
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Sloan Foundation |
DOI:10.1002/asi.24454 |
Free, Available for download, Freely available |
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https://github.com/softcite/softcite_dataset_v2, https://zenodo.org/record/7995565 |
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SCR_024411 |
SciCrunch Registry |
Software Citation |
2026-09-26 02:17:35 |
0 |
Computational Anatomy Toolbox for SPM
Resource Report
Resource Website
500+ mentions
|
Computational Anatomy Toolbox for SPM (RRID:SCR_019184)
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CAT
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data analysis software, data processing software, software application, software resource, software toolkit
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Software toolbox as extension to SPM12 to provide computational anatomy. This covers diverse morphometric methods such as voxel based morphometry, surface based morphometry, deformation based morphometry, and region or label based morphometry.
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MRI, neuroimaging, brain, voxel based morphometry, surface based morphometry, deformation based morphometry, label based morphometry, region based morphometry
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works with: SPM
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Free, Available for download, Freely available |
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SCR_019184 |
SciCrunch Registry |
CAT12 |
2026-09-26 02:16:15 |
581 |
UManitoba - JHU Functionally Defined Human White Matter Atlas
Resource Report
Resource Website
1+ mentions
|
UManitoba - JHU Functionally Defined Human White Matter Atlas (RRID:SCR_015525)
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atlas, data or information resource
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Probabilistic atlas of human white matter tracts/regions underlying several well-known resting state brain networks. The atlas includes group probability maps for each network, as well as each individual tract that are aligned to both the SPM and MRIStudio ICBM templates.
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white matter, dti tractography, resting state brain network, group probability map
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works with: MRI Studio
works with: SPM
works with: 3D Slicer
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PMID:26578930 |
Acknowledgement requested, Freely available, Available for download |
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SCR_015525 |
SciCrunch Registry |
UManitoba JHU Functionally Defined Human White Matter Atlas, UManitoba-JHU Functionally-Defined Human White Matter Atlas |
2026-09-26 02:18:54 |
1 |
LEAD-DBS
Resource Report
Resource Website
100+ mentions
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LEAD-DBS (RRID:SCR_002915)
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software resource, software toolkit
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MATLAB toolbox for deep-brain-stimulation (DBS) electrode reconstructions and visualizations based on postoperative MRI and computed tomography (CT) imaging. The toolbox also facilitates visualization of localization results in 2D/3D, analysis of DBS-electrode placement's effects on clinical results, simulation of DBS stimulations, diffusion tensor imaging (DTI) based connectivity estimates, and fiber-tracking from the VAT to other brain regions (connectomic surgery).
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matlab, deep brain stimulation, structural mri, reconstruction, dwi, dti, volume of activated tissue, modeling, subcortical atlas, depression, mri, computed tomography, atlas application, simulation, diffusion mr fiber tracking, three dimensional display, two dimensional display, surface rendering, volume rendering, workflow, neuroimaging, data repository
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is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: SPM
is related to: 3D Slicer
is related to: Atlasing of the basal ganglia
is related to: German Research Foundation
has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany
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Parkinson's disease, Dystonia, Depressive Disorder |
DFG KFO 247 |
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Free, Available for download, Freely available |
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SciRes_000188 |
http://www.nitrc.org/projects/lead-dbs |
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SCR_002915 |
SciCrunch Registry |
Lead-DBS, LEAD DBS, Lead DBS |
2026-09-26 02:19:04 |
279 |
spm_auto_reorient_coregister
Resource Report
Resource Website
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spm_auto_reorient_coregister (RRID:SCR_017281)
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software resource, software toolkit
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Open source cross platform for automatic AC-PC realignment, reorientation and coregistration robust to brain damage in Statistical Parametric Mapping. Set of routines to perform auto reorient and auto coregistration in toolbox SPM12.
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Nifti Libraries, NeuroImaging, MRI, MRI 3D image, reorientation, coregistration, statistical, parametric, mapping
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works with: SPM
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FNRS 1124417F |
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Free, Available for download, Freely available |
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SCR_017281 |
SciCrunch Registry |
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2026-09-26 02:19:29 |
0 |
NIAG Addiction Data
Resource Report
Resource Website
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NIAG Addiction Data (RRID:SCR_015523)
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data or information resource, data set
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Data set of addiction studies compiled by the NeuroImaging and Analysis Group (NIAG).
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addiction, neuroimaging, data set
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works with: SPM
works with: DTIProcess ToolKit
works with: FreeSurfer
works with: Analysis of Functional NeuroImages
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Open Source |
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http://niag.ir/ |
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SCR_015523 |
SciCrunch Registry |
NeuroImaging and Analysis Group Addiction Data |
2026-09-26 02:20:23 |
0 |
University College London; London; United Kingdom
Resource Report
Resource Website
10+ mentions
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University College London; London; United Kingdom (RRID:SCR_011603)
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UCL
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university
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Public research university located in London, England.
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uses: ReadCube
uses: Scizzle
uses: Writefull
uses: Research Accelerator
is related to: Predict-TB
is related to: OncoTrack
is related to: EU-AIMS
is related to: International AMD Genetics Consortium
is related to: EMIF
is parent organization of: Bio-derived Feedstocks for Sustainable UK-Based Manufacture of Chemicals and Pharmaceutical Intermediates
is parent organization of: UCL Biobank
is parent organization of: Zebrafish Brain Atlas
is parent organization of: Abysis Database
is parent organization of: Colour and Vision Research Laboratory
is parent organization of: Open Source Brain
is parent organization of: Camino
is parent organization of: pSTIING
is parent organization of: UCL Medical School; London; United Kingdom
is parent organization of: MIRIAD
is parent organization of: NiftyRec
is parent organization of: TractoR: Tractography with R
is parent organization of: NeuroML
is parent organization of: NeuroMatic
is parent organization of: Neuroendocrine Tumors Biobank
is parent organization of: UCL/UCLH Biobank for Studying Health and Disease
is parent organization of: Queen Square Brain Bank
is parent organization of: Cardiovascular Gene Ontology Annotation Initiative
is parent organization of: UCL Motor Control Group
is parent organization of: UCL Institute of Neurology
is parent organization of: NiftySim
is parent organization of: NiftyReg
is parent organization of: English Longitudinal Study of Ageing
is parent organization of: Decombinator
is parent organization of: NODDI Matlab Toolbox
is parent organization of: PRoNTo
is parent organization of: SPM
is parent organization of: BioRAT
is parent organization of: VIDA
is parent organization of: neuroConstruct
is parent organization of: CATH: Protein Structure Classification
is parent organization of: Gene3D
is parent organization of: Genomic Threading Database
is parent organization of: Bahler Laboratory: Genome Regulation
is parent organization of: FH HUS Mutation Database
is parent organization of: Tissue Access for Patient Benefit
is parent organization of: PSIPRED
is parent organization of: UCL Bioinformatics Group
is parent organization of: TREES toolbox
is parent organization of: NCL Resource - A gateway for Batten disease
is parent organization of: DC Analysis programs
is parent organization of: BioRAT
is parent organization of: EPIGEN
is parent organization of: Human Developmental Biology Resource
is parent organization of: PomBase
is parent organization of: NeuroGEMS informatics software
is parent organization of: ReadqPCR
is parent organization of: MISST - Microstructure Imaging Sequence Simulation ToolBox
is parent organization of: DTI-TK
is parent organization of: NiftyFit
is parent organization of: FRAGFOLD
is parent organization of: Suite2P
is parent organization of: TSDiffAna
is parent organization of: Silver Lab Microscopy Software
is parent organization of: Mutation and Patient Database
is parent organization of: ApiNATOMY
is parent organization of: BonVision project
is parent organization of: QSBB Digital Pathology Resource
is parent organization of: University College London Darwin Research Core Facility
is parent organization of: University College London Centre for Cell and Molecular Dynamics Core Facility
is parent organization of: University College London LMCB Light Microscopy Core Facility
is parent organization of: University College London Genomics Core Facility
is parent organization of: University College London School of Pharmacy Nuclear Magnetic Resonance Core Facility
is parent organization of: University College London School of Pharmacy Mass Spectrometry Core Facility
is parent organization of: University College London LMCB Electron Microscopy Core Facility
is parent organization of: University College London Single Cell and Spatial Omics Platform Core Facility
is parent organization of: University College London Molecular Biology Core Facility
is parent organization of: University College London Cancer Institute Pathology Translational Technology Platform TTP Core Facility
is parent organization of: University College London Mathematical and Physical Sciences Transmission Electron Microscopy Core Facility
is parent organization of: University College London Ear Institute Microscopy Unit Core Facility
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ISNI:121901201, Wikidata:Q193196, nlx_86831, Crossref funder ID:501100000765, grid.83440.3b |
https://ror.org/02jx3x895 |
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SCR_011603 |
SciCrunch Registry |
University College London |
2026-09-26 02:14:55 |
22 |
Debian
Resource Report
Resource Website
50+ mentions
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Debian (RRID:SCR_006638)
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Debian
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data or information resource, database, software repository, software resource, source code
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Debian is Linux distribution composed of free and open source software, developed by community supported Debian Project, which was established by Ian Murdock on August 16, 1993.Debian comes with over 59000 packages (precompiled software that is bundled up in nice format for easy installation on your machine), package manager (APT), and other utilities that make it possible to manage thousands of packages on thousands of computers as easily as installing single application.
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operating system, software package, FASEB list
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lists: GUARDD
lists: FACS
lists: SNAVI
lists: Fusion Analyser
lists: GEOquery
lists: MIMOSA
lists: RNAcontext
lists: AffyRNADegradation
lists: Patchwork
lists: GraBCas
lists: GENIE3
lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks
lists: Megraft
lists: PeptideProphet
lists: VARiD
lists: Flicker
lists: ARACHNE
lists: Quant
lists: riboPicker
lists: cn.FARMS
lists: ProteinProphet
lists: dbSTS
lists: flowPeaks
lists: SODOCK
lists: PEPPER
lists: POPBAM
lists: Micro-Analyzer
lists: MuTect
lists: Mfuzz
lists: PGS
lists: TAPyR
lists: ContEst
lists: FPSAC
lists: FlipFlop
lists: SRMA
lists: Pindel
lists: PhenoFam
lists: DSRC
lists: SOAP
lists: TriageTools
lists: StringTie
lists: SplitSeek
lists: BLASR
lists: Bowtie
lists: Barrnap
lists: MUSCLE
lists: GimmeMotifs
lists: massiR
lists: CUDA-EC
lists: Illuminator
lists: SplicePlot
lists: SLOPE
lists: PARalyzer
lists: VAAL
lists: BreakSeq
lists: ProGlycProt
lists: OmicsOffice for NGS SeqSolve
lists: TileQC
lists: NGSUtils
lists: QUAST
lists: GenomicTools
lists: piCALL
lists: SNPchip
lists: TALLYMER
lists: SABER
lists: wateRmelon
lists: QualiMap
lists: BFCounter
lists: ADMIXTURE
lists: OLIN
lists: DEXUS
lists: limmaGUI
lists: KAnalyze
lists: oneChannelGUI
lists: BeadDataPackR
lists: affylmGUI
lists: SAMBLASTER
lists: PyLOH
lists: fRMA
lists: CYCLE
lists: FARMS
lists: MACAT
lists: GlyProt
lists: YinOYang
lists: Sequedex
lists: DictyOGlyc
lists: ToppCluster
lists: Biocatalogue - The Life Science Web Services Registry
lists: ProbRNA
lists: HAPLOPAINTER
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: GERMLINE
lists: FACTA+.
lists: CisGenome
lists: asSeq
lists: unifiedWMWqPCR
lists: HOMOZYGOSITYMAPPER
lists: Prediction of Amyloid Structure Aggregation
lists: InterMine
lists: TANGO
lists: CQN
lists: MEME Suite - Motif-based sequence analysis tools
lists: pRESTO
lists: S-MART
lists: PhosphoSitePlus: Protein Modification Site
lists: myExperiment
lists: DINDEL
lists: Skylign
lists: PEDIGRAPH
lists: ADaCGH2
lists: CCAT
lists: AnimalTFDB
lists: TEMP
lists: CanSNPer
lists: Candida Genome Database
lists: SamSPECTRAL
lists: InteroPorc
lists: MetaBase
lists: Pecan
lists: cisRED: cis-regulatory element
lists: AffyPipe
lists: SHORTY
lists: BISC
lists: Pathway Commons
lists: Cake
lists: SNVer
lists: WebGeSTer DB
lists: FlyFactorSurvey
lists: ASPGD
lists: TcoF
lists: cpnDB: A Chaperonin Database
lists: ZOOM
lists: CAMERA - Collection of annotation related methods for mass spectrometry data
lists: BEETL-fastq
lists: NGSrich
lists: ShotGun
lists: Iterative Signature Algorithm
lists: SBARS
lists: SNPAAMapper
lists: Autophagy Database
lists: RUbioSeq
lists: COSMIC - Catalogue Of Somatic Mutations In Cancer
lists: EchoBASE
lists: QualitySNPng
lists: Pathview
lists: pymzML
lists: RopeBWT2
lists: ExomeDepth
lists: NetPathMiner
lists: leeHom
lists: PurBayes
lists: libCSAM
lists: SuperPred: Drug classification and target prediction
lists: HGNC
lists: Coding Potential Calculator
lists: T3DB
lists: CPTRA
lists: BioNumbers
lists: GATE
lists: ProRata
lists: GreenPhylDB
lists: BREAKDANCER
lists: GeneFisher
lists: tweeDEseq
lists: HYDEN
lists: Eukaryotic Linear Motif
lists: Primer3Plus
lists: MethylAid
lists: Triplex
lists: Distant Regulatory Elements
lists: hot scan
lists: MFEprimer
lists: Proteome Analyst Specialized Subcellular Localization Server
lists: mrsFAST
lists: BioJS
lists: FastSNP
lists: Gene Set Enrichment Analysis
lists: Pipeliner
lists: ms lims
lists: GenePattern
lists: rBiopaxParser
lists: QDNAseq
lists: MutDB
lists: Piano
lists: NovelSeq
lists: MAGE-TAB
lists: Database of Interacting Proteins (DIP)
lists: Weighted Gene Co-expression Network Analysis
lists: Blood Group Antigen Gene Mutation Database
lists: drFAST
lists: pairheatmap
lists: MiST - Microbial Signal Transduction database
lists: AltAnalyze - Alternative Splicing Analysis Tool
lists: SplicingCompass
lists: deFuse
lists: Assembly Based ReAligner
lists: ggbio
lists: miR-PREFeR
lists: ALDEx2
lists: HTqPCR
lists: NanoStringNorm
lists: T-profiler
lists: Snakemake
lists: jmzTab
lists: MIPgen
lists: Bpipe
lists: PoPoolation
lists: L-Measure
lists: MultiPhen
lists: PheWAS R Package
lists: InsertionMapper
lists: Quantitative Enrichment of Sequence Tags
lists: INMEX
lists: Segway - a way to segment the genome
lists: SeWeR - SEquence analysis using WEb Resources
lists: TagDust
lists: BSRD
lists: DER Finder
lists: Stem Cell Discovery Engine
lists: Kdetrees
lists: Tree and reticulogram REConstruction
lists: BioPig
lists: NCBI BioSystems Database
lists: Distributed String Mining Framework
lists: NEWT
lists: PILGRM
lists: Selectome: a Database of Positive Selection
lists: SVMerge
lists: Parseq
lists: SVseq
lists: Small Molecule Pathway Database
lists: miRNAKey
lists: DELLY
lists: Apo and Holo structures DataBase
lists: BioSample Database at EBI
lists: MetaPhyler
lists: MG-RAST
lists: SLIQ
lists: SOPRA
lists: Information Hyperlinked Over Proteins
lists: AmphoraNet
lists: SINA
lists: SSPACE
lists: Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets
lists: STING Report
lists: G-BLASTN
lists: RNA-eXpress
lists: MethPipe
lists: SoyBase
lists: Strelka2
lists: RUM
lists: SPOT - Biological prioritization after a SNP association study
lists: VFS
lists: PHAge Search Tool
lists: MLTreeMap
lists: SEECER
lists: GeneTalk
lists: ERANGE
lists: rQuant
lists: NCBO Annotator
lists: ShoRAH
lists: Yabi
lists: ORMAN
lists: FusionMap
lists: CoPub
lists: Scripture
lists: SolexaQA
lists: Kismeth
lists: EMAGE Gene Expression Database
lists: SAMStat
lists: Knime4Bio
lists: Bis-SNP
lists: GobyWeb
lists: Jellyfish
lists: PRINSEQ
lists: PASS
lists: GSNAP
lists: SOAPaligner/soap2
lists: MethylViewer
lists: READSCAN
lists: DistMap
lists: MicrobesOnline
lists: mrFAST
lists: FLASH
lists: TIGRFAMS
lists: TMA Navigator
lists: Bambino
lists: TreQ
lists: SeqMap
lists: SeqTrace
lists: TRANSFAC
lists: GoFish
lists: MethylomeDB
lists: CLIPZ
lists: SerbGO
lists: ToppGene Suite
lists: ngsTools
lists: PePr
lists: DMRforPairs
lists: CharProtDB: Characterized Protein Database
lists: Expression Profiler
lists: SNPsandGO
lists: GoSurfer
lists: WEGO - Web Gene Ontology Annotation Plot
lists: SOURCE
lists: Stampy
lists: DiseaseMeth
lists: BLESS
lists: GraphProt
lists: GoPubMed
lists: ccPDB - Compilation and Creation of datasets from PDB
lists: Europe PubMed Central
lists: Dr.VIS - Human Disease-Related Viral Integration Sites
lists: DOMMINO - Database Of MacroMolecular INteractiOns
lists: DBETH - Database for Bacterial ExoToxins for Humans
lists: VirHostNet: Virus-Host Network
lists: GWASdb
lists: HFV Database
lists: HotRegion - A Database of Cooperative Hotspots
lists: eQuilibrator
lists: FunTree
lists: Cascade
lists: 959 Nematode Genomes
lists: ICEberg
lists: IndelFR - Indel Flanking Region Database
lists: IDEAL - Intrinsically Disordered proteins with Extensive Annotations and Literature
lists: ProRepeat
lists: NRG-CING
lists: InterEvol database
lists: MMMDB - Mouse Multiple tissue Metabolome DataBase
lists: Newtomics
lists: MIPModDB
lists: DistiLD - Diseases and Traits in LD
lists: Polbase
lists: UMD-BRCA1/ BRCA2 databases
lists: ScerTF
lists: VIRsiRNAdb
lists: ProPortal
lists: OGEE - Online GEne Essentiality database
lists: RecountDB
lists: PRED-GPCR
lists: RNA CoSSMos
lists: PRED-SIGNAL
lists: SNPedia
lists: SpliceDisease
lists: HMM-TM
lists: deepSNV
lists: OMPdb
lists: PRED-LIPO
lists: VICUNA
lists: Predictive Networks
lists: COEUS
lists: GeneTrail
lists: epigenomix
lists: ADGO
lists: SRAdb
lists: QCGWAS
lists: Flycircuit
lists: MouseBook
lists: Immune Epitope Database and Analysis Resource (IEDB)
lists: SitEx
lists: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
lists: MSIsensor
lists: TSSer
lists: ATRHUNTER
lists: Phytozome
lists: Decombinator
lists: ViralZone
lists: COLT-Cancer
lists: Gene Expression Database
lists: BEDTools
lists: waviCGH
lists: Pseudomonas Genome Database
lists: BIGpre
lists: MyHits
lists: CAPS Database
lists: SpliceTrap
lists: EagleView
lists: IMGT/LIGM-DB
lists: RIKEN integrated database of mammals
lists: COHCAP
lists: DARC - Database for Aligned Ribosomal Complexes
lists: canSAR
lists: GWAMA
lists: AutismKB
lists: zfishbook
lists: PomBase
lists: Myrna
lists: PLEXdb - Plant Expression Database
lists: RamiGO
lists: PhenoM - Phenomics of yeast Mutants
lists: IMGT/GENE-DB
lists: HIstome: The Histone Infobase
lists: SCOP: Structural Classification of Proteins
lists: CuticleDB
lists: agriGO
lists: Expression Database in 4D
lists: ESEfinder 3.0
lists: TriTrypDB
lists: VIDA
lists: Database of Arabidopsis Transcription Factors
lists: Atlas of Genetics and Cytogenetics in Oncology and Haematology
lists: AgBase
lists: Hyper Cell Line Database
lists: Midbody, Centrosome and Kinetochore
lists: Chromosome 7 Annotation Project
lists: MfunGD - MIPS Mouse Functional Genome Database
lists: Taipan
lists: VISTA Browser
lists: T1DBase
lists: lobSTR
lists: VISTA Enhancer Browser
lists: MEROPS
lists: Gene Array Analyzer
lists: Network Analysis, Visualization and Graphing TORonto
lists: Candidate Genes to Inherited Diseases
lists: Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD)
lists: eTBlast
lists: hiPathDB - human integrated Pathway DB with facile visualization
lists: MuSiC
lists: miRNEST
lists: QuasiRecomb
lists: neXtProt
lists: DNAtraffic
lists: BeeBase
lists: NetOGlyc
lists: GenoTan
lists: GMAP
lists: LegumeIP
lists: SeqBuster
lists: elastix
lists: iMir
lists: WEBLOGO
lists: MaCH-Admix
lists: Pathema
lists: SNPinfo Web Server
lists: MOSCPHASER
lists: NEBcutter
lists: Atlas2
lists: FGDP
lists: Velvet
lists: HomSI
lists: MicroSNiPer
lists: MIRA
lists: ALLPATHS-LG
lists: CUPSAT
lists: SVDetect
lists: omiRas
lists: CopySeq
lists: MutSig
lists: HapFABIA
lists: DIANA-LncBase
lists: MutationTaster
lists: HMCan
lists: Geneious
lists: kmer-SVM
lists: SICER
lists: ZINBA
lists: Pedimap
lists: MAnorm
lists: PlantTFcat
lists: MethMarker
lists: NPS
lists: PeakRanger
lists: SEAL
lists: OligoArray
lists: PSAR-Align
lists: CEQer
lists: CloudBurst
lists: nucleR
lists: RACE
lists: Asterias
lists: PatMaN
lists: RobiNA
lists: LitInspector
lists: Btrim
lists: ArrayAnalysis.org
lists: CANGS
lists: GeneStitch
lists: ProDesign
lists: JiffyNet
lists: AlienTrimmer
lists: GenoREAD
lists: HSLPred
lists: CancerResource
lists: FABIA
lists: PlnTFDB
lists: easyRNASeq
lists: OBI-Warp
lists: PREDDIMER
lists: ECHO
lists: ICPL ESIQuant
lists: PRIDE Converter 2
lists: SlideSort-BPR
lists: COBRApy
lists: MFPaQ
lists: TopHat-Fusion
lists: miRPlant
lists: SNP ratio test
lists: compomics-utilities
lists: PLEK
lists: multiplierz
lists: Allim
lists: ISDTool
lists: NetCoffee
lists: MToolBox
lists: Scalpel
lists: DNaseR
lists: LocalAli
lists: NAIL
lists: iceLogo
lists: GPU-Meta-Storms
lists: AMS
lists: rqubic
lists: ANNOVAR
lists: A5-miseq
lists: PhosphoSiteAnalyzer
lists: Cell motility
lists: MethylCoder
lists: CAZy- Carbohydrate Active Enzyme
lists: CPFP
lists: GENE-counter
lists: PoolHap
lists: LOCAS
lists: CloudAligner
lists: HeurAA
lists: Mouse Genome Database
lists: MitoBreak
lists: PolyPhen: Polymorphism Phenotyping
lists: GSA-SNP
lists: featureCounts
lists: Crossbow
lists: CSAR
lists: seqMINER
lists: BEADS
lists: IUPHAR/BPS Guide to Pharmacology
lists: QuantiSNP
lists: Cube-DB
lists: Death Domain database
lists: psRNATarget
lists: DSAP
lists: PlantNATsDB - Plant Natural Antisense Transcripts DataBase
lists: GeneSigDB
lists: MACS
lists: NGSmethDB
lists: GENSCAN
lists: INCLUSive
lists: MINAS - Metal Ions in Nucleic AcidS
lists: Composition Profiler
lists: NNcon
lists: EGSEA
lists: SCRATCH
lists: Telescoper
lists: Buccaneer
lists: ProtTest
lists: Morpheus
lists: KAVIAR
lists: DISEASES
lists: SPEX2
lists: RAST Server
lists: GeneWise
lists: Crystallography and NMR System (CNS)
lists: FATCAT
lists: Membrane Protein Explorer
lists: LTR_Finder
lists: PALEOMIX
lists: TISSUES
lists: MetaMapR
lists: primers4clades
lists: MS-GF+
lists: PLAN2L
lists: Off-Spotter
lists: ProteomicsDB
lists: CHiCAGO
lists: SC3
lists: Bio-tradis
lists: ApiDB CryptoDB
lists: HISAT2
lists: PhyD3
lists: LoRDEC
lists: Bamtools
lists: ALTER
lists: MultiQC
lists: TFBS
lists: EnrichmentMap
lists: Poretools
lists: Exonerate
lists: 3D-footprint
lists: Genesis
lists: oligo
lists: DISULFIND
lists: Fastml
lists: mentha
lists: Oufti
lists: eXpression2Kinases
lists: IDEPI - IDentify EPItopes
lists: SMAGEXP
lists: ProCon - PROteomics CONversion
lists: TRANSIT
lists: DINIES
lists: Splicing Express
lists: FluxModeCalculator
lists: Lifebit Deploit
lists: ngsRelate
lists: SARTools
lists: OmicsNet
lists: SPICE
lists: Microscopy Image Browser
lists: Thunder STORM
lists: clusterProfiler
lists: NetworkAnalyst
lists: ANOCVA
lists: Rsubread
lists: Subread
lists: ConsensusClusterPlus
lists: CIBERSORT
lists: FRETBursts
lists: CCTOP
lists: scran
lists: ScaffMatch
lists: Heatmapper
lists: Goseq
lists: PRSice
lists: UMI-tools
lists: Proovread
lists: BinPacker
lists: JAMM
lists: CentroidFold
lists: ComplexHeatmap
lists: PatchDock
lists: FastProject
lists: ExPASy ABCD database
lists: Gigwa
lists: shinyGEO
lists: GeSeq
lists: EMBOSSMatcher
lists: Geneshot
lists: Mousebytes
lists: trimAl
lists: AmoebaDB
lists: STRUCTURE
lists: PASTEClassifier
lists: NetPhos
lists: HiC-Pro
lists: SWISS-MODEL
lists: Blood Exposome Database
lists: HingeProt
lists: ChiCMaxima
lists: ProtParam Tool
lists: GalaxyRefine
lists: FlowCal
lists: SpydrPick
lists: R/qtl2
lists: Roary
lists: SIGNOR
lists: Protein Interactions Calculator
lists: REDIportal
lists: MaxAlign
lists: Minimap2
lists: PrognoScan
lists: GPS-SUMO
lists: Signaling Pathways Project
lists: ProSA-web
lists: GalaxyWEB
lists: iTOL
lists: EpiModel
lists: rVista
lists: AlgPred
lists: D-GENIES
lists: Robetta
lists: GOnet
lists: E-CRISP
lists: STAMP
lists: Batch Web CD-Search Tool
lists: aroma.light
lists: Annotree
lists: Database of Secondary Structure Assignments
lists: Clustal Omega
lists: DESeq
lists: discoSnp
lists: vcflib
lists: Genome BioInformatics Research Lab - gff2ps
lists: Primer3
lists: BioPerl
lists: Rainbow
lists: RNAhybrid
lists: Clustal W2
lists: Apollo
lists: IgBLAST
lists: Ray
lists: khmer
lists: Stacks
lists: Predictions for Entire Proteomes
lists: DIALIGN
lists: EBSeq
lists: Minia
lists: SAMtools/BCFtools
lists: Artemis: Genome Browser and Annotation Tool
lists: NCBI BLAST
lists: biobambam
lists: VICMpred
lists: Staden Package
lists: Bowtie 2
lists: RAxML
lists: WHAM
lists: VarScan
lists: Bismark
lists: ea-utils
lists: HTSeq
lists: Vienna RNA
lists: Regulatory Sequence Analysis Tools
lists: BitSeq
lists: COILS: Prediction of Coiled Coil Regions in Proteins
lists: HilbertVis
lists: BRIG
lists: Unipro UGENE
lists: GBrowse
lists: Sickle
lists: AmpliconNoise
lists: FreeBayes
lists: tRNAscan-SE
lists: CD-HIT
lists: SSAKE
lists: MACH
lists: Segemehl
lists: BEAST
lists: Pscan-ChIP
lists: cutadapt
lists: Oases
lists: CGView
lists: SOAPsnp
lists: T-Coffee
lists: Kalign
lists: Circos
lists: Trinity
lists: Flexbar
lists: SIFT
lists: ProbCons
lists: OpenMS
lists: RSEM
lists: Glimmer
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lists: TreeView
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lists: Vascular Modeling Toolkit
lists: Aegean
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lists: Anndata
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lists: ARB project
lists: ArtificialFastqGenerator
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lists: BioSig: An Imaging Bioinformatics System for Phenotypic Analysis
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lists: Computerized Anatomical Reconstruction and Editing Toolkit
lists: CellProfiler Image Analysis Software
lists: ChIPSeq Peak Finder
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lists: GERP
lists: Gff2aplot
lists: gffread
lists: GraPhlAn
lists: Gubbins
lists: Harvest-tools
lists: HiLive
lists: Hinge
lists: ImageMagick
lists: ImageVis3D
lists: Indelible
lists: InVesalius 3
lists: IQ TREE
lists: ITK-SNAP
lists: JBrowse
lists: JIST: Java Image Science Toolkit
lists: Fastahack
lists: Lipsia
lists: LUMPY
lists: Mash
lists: Mesquite
lists: MetaBAT
lists: MOSAIK
lists: MRtrix
lists: Human Disease Ontology
lists: NanoFilt
lists: Object-Oriented Development Interface for NMR
lists: OpenElectrophy
lists: OpenMEEG
lists: OpenWalnut
lists: OptiType
lists: PARASAIL
lists: ParaView
lists: PhyloPhlAn
lists: Phyutility
lists: Porechop
lists: PSIPRED
lists: PsychoPy
lists: Pychopper
lists: pydicom
lists: PySurfer
lists: MNE software
lists: pbcore
lists: pyxnat
lists: QIIME2
lists: RAxML Next Generation
lists: ShortRead
lists: Phangorn
lists: psych
lists: VennDiagram
lists: Recognition of Errors in Assemblies using Paired Reads
lists: RELION
lists: RStudio
lists: Salmon
lists: Scoary
lists: University of Zurich SCRM - Cell-and Tissue Biobank
lists: Short Read Sequence Typing for Bacterial Pathogens
lists: Umap
lists: VoxBo
lists: WTDBG
lists: XNAT - The Extensible Neuroimaging Archive Toolkit
lists: ABACAS
lists: AceDB
lists: LINKAGE
lists: Protein Information Resource
lists: PredictNLS
lists: tRNAscan-SE
lists: RSEM
lists: Aeskulap
lists: alleleCount
lists: assembly-stats
lists: Atropos
lists: Assemblytics
lists: Augur
lists: AxParafit
lists: Aghermann
lists: bambamc
lists: AxPcoords
lists: bamkit
lists: BAli-Phy
lists: Auspice
lists: BBHash
lists: BCALM 2
lists: Bibus
lists: BioMAJ
lists: BioCocoa
lists: Biber
lists: BioImageXD
lists: caftools
lists: BOLT-LMM
lists: CamiTK
lists: CLI for BioMAJ
lists: CAMP
lists: CAT and BAT
lists: CHIME
lists: CDK
lists: ChromImpute
lists: CiftiLib
lists: conda-package-handling
lists: CARD
lists: CONTRAfold
lists: CodonW
lists: Change-O
lists: C Thread Pool
lists: Chemtool
lists: covtobed
lists: CTK
lists: CTDopts
lists: CTDConverter
lists: Conquest DICOM
lists: CTSim
lists: Dicom3tools
lists: Dendroscope3
lists: cyvcf2
lists: Deepbinner
lists: EDFlib
lists: EDFbrowser
lists: dicompyler
lists: EMMAX
lists: DEXTRACTOR
lists: DNApi
lists: Epigrass
lists: ELPH
lists: ExaBayes
lists: EMPeror
lists: FreeImage
lists: Fast5 Library
lists: Entangle
lists: FFP
lists: GenomeTester4
lists: Filtlong
lists: EMBOSS explorer
lists: GfaPy
lists: GATB
lists: GCLib
lists: EpiFire
lists: HTSJDK
lists: GDCM
lists: GNUmed
lists: GraphMap2
lists: foreign
lists: Ginkgo CADx
lists: GramAlign
lists: IDeFIX
lists: ImageTooth
lists: Htscodecs
lists: IGoR
lists: iVar
lists: InsPecT
lists: Intake
lists: IgDiscover
lists: JAligner
lists: ISMRMRD
lists: JabRef
lists: Lambda
lists: Kaptive
lists: KBibTeX
lists: InSilicoSeq
lists: kineticsTools
lists: AcePerl
lists: KmerResistance
lists: Bio-EUtilities
lists: Insight Toolkit
lists: Kleborate
lists: KMA
lists: kempbasu
lists: Bio-ASN1-EntrezGene
lists: IVA
lists: Bio-Coordinate
lists: Bio-Graphics
lists: AI-FANN
lists: Bio-Chado-Schema
lists: BioD
lists: Bio-Tools-Run-Alignment-Clustalw
lists: Bio-PrimerDesigner
lists: Bioparser
lists: Edlib
lists: Bio-SamTools
lists: libdisorder
lists: libncl
lists: Bio-Tools-Run-Alignment-TCoffee
lists: Chado
lists: Bio-Tools-Phylo-PAML
lists: libGDF
lists: JLODA
lists: libdivsufsort
lists: libminc
lists: Bio-SCF
lists: Sort-Key-Top
lists: Java NeXML libraries and tools
lists: libmaus2
lists: libqes
lists: MIA
lists: libics
lists: FAST Analysis of Sequences Toolbox
lists: Libchipcard
lists: TaxonomyTree
lists: Core Wrapper
lists: Lighter
lists: SSW Library
lists: libqc++
lists: SeqLib
lists: tabixpp
lists: libStatGen
lists: ThreadPool
lists: Lucy
lists: MafFilter
lists: Metastudent
lists: Libxdf
lists: limereg
lists: Mapsembler2
lists: MAXFLOW
lists: metaBIT
lists: MacSyFinder
lists: VIGRA
lists: MCL
lists: MHAP
lists: MindTheGap
lists: Logol
lists: medicalterms
lists: mmtf-python
lists: Miniasm
lists: Tab2MAGE
lists: MView
lists: LTRsift
lists: Molekel
lists: mirtop
lists: Maude
lists: MicrobeGPS
lists: mPSQed
lists: mPTP
lists: SMILE
lists: Entrez Direct
lists: NW-align
lists: NanoSV
lists: Mustang
lists: Nanocall
lists: Ngila
lists: MRtrix3
lists: NORSp
lists: Murasaki
lists: Nextflow
lists: NCBI accession download script
lists: omegaMap
lists: NJplot
lists: NanoLyse
lists: OpenCFU
lists: NORSnet
lists: OBITools
lists: NeoBio
lists: OptimiR
lists: PartitionFinder
lists: OpenSurgSim
lists: NanoPlot
lists: NextSV
lists: OpenEMR
lists: Orthanc
lists: PAIPline
lists: Odil
lists: PHYLOViZ
lists: PlasmidSeeker
lists: PDB2PQR
lists: OpenIGTLink
lists: Parsnp
lists: parallel-fastq-dump
lists: ParsInsert
lists: PiGx-RNAseq
lists: PfTools
lists: PlasmidID
lists: Phyx
lists: pipasic
lists: pngquant
lists: pbcopper
lists: Patristic
lists: PLIP
lists: Placnet
lists: PhySamp
lists: pufferfish
lists: PRINSEQ
lists: PLAST
lists: PCMA
lists: picopore
lists: POA
lists: PROFisis
lists: ProDA
lists: PRANK
lists: Cooler
lists: pyepl
lists: pssh2
lists: Plastimatch
lists: pynast
lists: psignifit
lists: python-airr
lists: Populations
lists: pyFAI
lists: python-biom-format
lists: pyranges
lists: purple
lists: PyCogent
lists: qtlreaper
lists: qcumber
lists: python-bx
lists: pyomo
lists: pycoqc
lists: Proteinortho
lists: DendroPy
lists: qtltools
lists: pyscanfcs
lists: rambo-k
lists: qcat
lists: rasmol
lists: rampler
lists: raccoon
lists: ragout
lists: rapmap
lists: quicktree
lists: Raster3D
lists: AnnotationHub
lists: Rate4Site
lists: altcdfenvs
lists: annotate
lists: biomformat
lists: Biobase
lists: affyio
lists: bridgedbr
lists: BiocGenerics
lists: biovizBase
lists: genefilter
lists: CNEr
lists: bsgenome
lists: geneplotter
lists: ctc
lists: genomicalignments
lists: go.db
lists: genomeinfodb
lists: hypergraph
lists: gviz
lists: groHMM
lists: mergeomics
lists: impute
lists: makecdfenv
lists: multiassayexperiment
lists: qusage
lists: mutationalpatterns
lists: metagenomeseq
lists: preprocesscore
lists: pwmenrich
lists: rbgl
lists: htsfilter
lists: nanostringqcpro
lists: rgsepd
lists: rcpi
lists: pcaMethods
lists: adephylo
lists: rsamtools
lists: savr
lists: tfbstools
lists: xvector
lists: ade4
lists: biwt
lists: beeswarm
lists: cmprsk
lists: alakazam
lists: bio3d
lists: Epi
lists: BoolNet
lists: DT
lists: DoseFinding
lists: itertools
lists: fitdistrplus
lists: fitbitscraper
lists: dynamicTreeCut
lists: epibasix
lists: distory
lists: forecast
lists: incidence
lists: hms
lists: nmf
lists: mediana
lists: genetics
lists: lexrankr
lists: psychometric
lists: optimalcutpoints
lists: proc
lists: pcapp
lists: parmigene
lists: rann
lists: phylobase
lists: psyphy
lists: psychotree
lists: rnexml
lists: rook
lists: rpact
lists: tigger
lists: robustrankaggreg
lists: qqman
lists: rwave
lists: shazam
lists: rsvd
lists: rncl
lists: rotl
lists: rniftilib
lists: sjplot
lists: wavethresh
lists: stringi
lists: snowfall
lists: waveslim
lists: surveillance
lists: tsne
lists: webgestaltr
lists: resfinder
lists: readucks
lists: recan
lists: roadtrips
lists: readseq
lists: roguenarok
lists: rtax
lists: rgfa
lists: ruby-bio
lists: runcircos-gui
lists: sailfish
lists: samclip
lists: saint
lists: sambamba
lists: seqmagick
lists: sbmltoolbox
lists: seq-seq-pan
lists: seqsero
lists: seqwish
lists: shapeit4
lists: sepp
lists: crb-blast
lists: sigma-align
lists: sibsim4
lists: signalalign
lists: sibelia
lists: shiny-server
lists: sistr
lists: skesa
lists: sigviewer
lists: snpomatic
lists: spaced
lists: sitplus
lists: sofa-apps
lists: sra-toolkit
lists: strap-base
lists: sparta
lists: swarm
lists: sourmash
lists: surankco
lists: streamlit
lists: tab2mage
lists: sumaclust
lists: sweed
lists: tacg
lists: zAlign
lists: tiddit
lists: Workrave
lists: sprai
lists: VolPack
lists: XMedCon
lists: Yanosim
lists: Yanagiba
lists: libswiss-perl
lists: yaha
lists: VisIt
lists: VelvetOptimiser
lists: variation graph
lists: vcfanno
lists: VarMatch
lists: VirulenceFinder
lists: CCS
lists: VADR
lists: VARNA
lists: VMD
lists: FISH
lists: trace2dbEST
lists: TREE-PUZZLE
lists: umis
lists: Trinculo
lists: toil
lists: TRANSIT
lists: toppred
lists: Unicycler
lists: TM-align
lists: Tn-seq explorer
lists: Tombo
lists: TopHat-Recondition
is related to: FreeContact
is parent organization of: neurodebian
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Free, Freely available |
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nlx_151598 |
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SCR_006638 |
SciCrunch Registry |
Debian - The universal operating system, Debian GNU/Linux |
2026-09-26 02:14:07 |
52 |
NeuroImaging Tools and Resources Collaboratory (NITRC)
Resource Report
Resource Website
100+ mentions
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NeuroImaging Tools and Resources Collaboratory (NITRC) (RRID:SCR_003430)
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NITRC
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community building portal, data or information resource, data repository, portal, service resource, software repository, software resource, storage service resource
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Software repository for comparing structural (MRI) and functional neuroimaging (fMRI, PET, EEG, MEG) software tools and resources. NITRC collects and points to standardized information about structural or functional neuroimaging tool or resource.
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collaboration, information, resource, structural, functional, neuroimaging, MRI, fMRI, EEG, MEG, PET
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is used by: NIF Data Federation
is used by: Consortium for Reliability and Reproducibility
is used by: DataLad
is recommended by: National Library of Medicine
lists: Dipy
lists: 3DMeshMetric
lists: MPScope
lists: VectorValuedHistogramNormalizer
lists: Faceted Search Based Ontology Visualizer
lists: Morphometry BIRN
lists: Colin 3T/7T High-resolution Atlas
lists: CMFreg
lists: BrainFX
lists: dinifti
lists: Center for Computational Biology at UCLA
lists: Convert MNI coordinates to or from XYZ
lists: Licensing issues in software and data
lists: Local Binary Pattern Analysis Tools for MR Brain Images
lists: MIView
lists: uManager
lists: Penn Hippocampus Atlas
lists: RapidArt
lists: Scribe
lists: ShapeWorks
lists: Vervet Probabilistic Atlas
lists: Talairach Daemon
lists: ADHD-200 Preprocessed Data
lists: LORIS - Longitudinal Online Research and Imaging System
lists: NVM
lists: Maps4Mipav (Exploratory JIST)
lists: Autism Tissue Program
lists: MEG Tools
lists: PyNIfTI
lists: LONI Visualization Tool
lists: Mind Research Network - COINS
lists: OpenElectrophy
lists: CIFTI Connectivity File Format
lists: 3DSlicerLupusLesionModule
lists: BrainNetworkConstructionAnalysisPlatform
lists: COMPARE
lists: Data Format Tools
lists: GesTr
lists: I/OWA
lists: MINC Example files
lists: cbiNifti: Matlab/Octave Nifti library
lists: BRAINSCut
lists: C-PAC
lists: Connectir
lists: DicomBrowser
lists: Hitachi Optical Topography System
lists: Net Station API
lists: imcalc: SPM batch image calculator
lists: BRAINSCortex
lists: Insight Segmentation and Registration Toolkit
lists: LONI Debabeler
lists: LONI Pipeline Processing Environment
lists: NiLearn
lists: MRI Studio
lists: BraVa
lists: Brede Wiki
lists: Center for Functional Neuroimaging Technologies
lists: Philips Users Community
lists: medInria
lists: Beijing: Eyes Open Eyes Closed Study
lists: vIST/e
lists: Camino
lists: Diffusion Tensor Imaging ToolKit
lists: TORTOISE
lists: NIDAG: Neuroimaging Data Access Group
lists: MRI CVPR
lists: vuTools
lists: Medical Image Processing and Visualization in Virtual Environments
lists: Brainstorm
lists: Atlas3D
lists: FMRISTAT - A general statistical analysis for fMRI data
lists: FreeSurfer
lists: Rosetta Bit
lists: Laboratory of Neuro Imaging
lists: Group ICA of fMRI Toolbox
lists: Hierarchical Attribute Matching Mechanism for Elastic Registration
lists: Internet Brain Segmentation Repository
lists: Neural ElectroMagnetic Ontologies (NEMO) Project
lists: Wavelet-based Image Fusion
lists: ITK-SNAP
lists: Internet Brain Volume Database
lists: Statistical non-Parametric Mapping
lists: VoxBo
lists: NITRC Computational Environment
lists: Spatially Constrained Parcellation
lists: Cluster reporter
lists: Cluster Extent Correction
lists: 4D Atlases Construction
lists: CIGAL
lists: CleanLine
lists: Computational Morphometry Toolkit
lists: Cognitive Paradigm Ontology
lists: aBEAT
lists: MR Connectome Automated Pipeline
lists: International Neuroinformatics Coordinating Facility
lists: Functional Regression Analysis of DTI Tract Statistics
lists: MCIC
lists: MGDM: Multi Geometric Deformable Model
lists: MIAS Registration Toolkit
lists: Medical Image Visualization and Analysis
lists: Microstructural correlation toolbox
lists: MisterI
lists: MriWatcher
lists: Multiple Correlation Function Tool
lists: NITRC Community Conferences Workshops and Meetings
lists: BRAINSFit
lists: INCF Software Center
lists: BrainVision Analyzer
lists: COGNISION
lists: DPARSF
lists: GLIRT
lists: MINC
lists: Group Level Imputation of Statistic Maps
lists: MRIcron
lists: Inter-Group Registration Toolbox
lists: MCML and CONV
lists: MEGSIM
lists: MIRIAD
lists: MRI Defacer
lists: MS lesion segmentation challenge 2008
lists: Measure Projection Toolbox
lists: Mindboggle
lists: Mindboggle-101 atlases
lists: ModelGUI
lists: Multi-Modal MRI Reproducibility Resource
lists: MultiTracer
lists: Multicomponent T2 estimation with stimulated echo correction
lists: NCANDA: Data Integration Component
lists: NFT
lists: Net Station EEG Software
lists: Network Based Statistic Toolbox
lists: NeuroScope
lists: Numerical Fibre Generator
lists: PSTNet: MRI Simulator
lists: cortex
lists: iBEAT
lists: M3
lists: Group ICA Of EEG Toolbox
lists: 4D-PARSeR Pathological Anatomy Regression via Segmentation and Registration
lists: Automatic Segmentation Tool Adapter
lists: DTI-TEMPLATE-RHESUS-MACAQUES
lists: LONI Provenance Editor
lists: MNI N3
lists: MRI Digital Projection System
lists: NIDB - Neuroinformatics Database
lists: NIPY
lists: NIRAL Utilities
lists: NIRx NIRS Neuroimaging
lists: NIRx2nirs: A NIRx to .nirs data converter
lists: NITRC Enhanced Services
lists: NITRC GForge Extensions
lists: NPTK
lists: NeuroImaging Analysis Kit (NIAK)
lists: NiBabel
lists: NiftyRec
lists: Nipype
lists: Nirfast
lists: Nitime
lists: Non-Rigid Image Registration Evaluation Project
lists: Normative Independent Component Analysis
lists: OEI: fMRI compatible olfactometer
lists: ORS Visual SI
lists: OpenMEEG
lists: PANDA
lists: PESTICA fMRI Physio Detection/Correction
lists: PHYCAA+: adaptive physiological noise correction for BOLD fMRI
lists: ParaView
lists: Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR)
lists: Presentation
lists: PySurfer
lists: Pythagorean Displacement and Motion Regressors
lists: Quantitative Diffusion Tools
lists: R-package for adaptive DWI analysis
lists: R-package for adaptive fMRI analysis
lists: REX
lists: RFT FDR
lists: ROBEX
lists: RT Image
lists: Resource Ontology Discussion Group
lists: Rodent Brain Extraction Tool
lists: Rodent Cortical Thickness Analysis
lists: S-rep Fitting Statistics and Segmentation
lists: SCIRun
lists: SCRalyze
lists: SOCK
lists: SPHARM-MAT
lists: SPHARM-PDM Toolbox
lists: SRI24 Atlas: Normal Adult Brain Anatomy
lists: Seg3D
lists: ShapeComplexAtlas
lists: Signed Differential Mapping
lists: Sleuth
lists: Slice:Drop
lists: Slicer3 Example Modules
lists: Source Information Flow Toolbox
lists: Spanish Resting State Network
lists: Spatial Analysis 3D
lists: Stereoscopic Atlas of Intrinsic Brain Networks
lists: UNC Infant 0-1-2 Atlases
lists: UNC Primate Brain Atlas
lists: XCEDE Schema
lists: peak nii
lists: pydicom
lists: pyxnat
lists: scikit-learn
lists: shapeAnalysisMANCOVA - SPHARM tools
lists: VMTK in 3D Slicer
lists: 3D Interactive Chemical Shift Imaging
lists: BRAINSSurfaceStats
lists: Brain lesion segmentation tool using SVM
lists: Diffusion Tractography with Kalman Filter
lists: Fast Nonlocal Means for MRI denoising
lists: Monte Carlo Simulation Software: tMCimg
lists: Web Interfaces for Multiscale Images
lists: STAPLE
lists: Segmentation Validation Engine
lists: Spatial Statistical Parametric Mapping
lists: SpineSegmentation module for 3DSlicer
lists: Stochastic Tractography System
lists: Subject Library
lists: TAPIR
lists: TARQUIN
lists: Template Image Processing Library
lists: TetraMetrix
lists: TractoR: Tractography with R
lists: Triangle BioSystems
lists: TumorSim
lists: TurtleSeg
lists: UNC Human Brain Atlas
lists: VR Worlds 2
lists: Vaa3D
lists: ValMap: simple statistical mapping tool
lists: WFU Biological Parametric Mapping Toolbox
lists: WFU Pipeline
lists: Working Memory Trainer
lists: vis: SPM Visualized Statistics toolbox
lists: Synchronized Histological Image Viewing Architecture
lists: LONI ShapeViewer
lists: LONI ShapeTools
lists: FFT Library
lists: Automated recognition of brain region mentions in neuroscience literature.
lists: NUTMEG
lists: Cognitive Atlas
lists: Mouse BIRN Atlasing Toolkit
lists: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat
lists: FSL
lists: LEAD-DBS
lists: Brainscape
lists: EONS
lists: BioImage Suite
lists: ADNI - Alzheimer's Disease Neuroimaging Initiative
lists: MindSeer
lists: XNAT - The Extensible Neuroimaging Archive Toolkit
lists: brainmap.org
lists: ImageJ
lists: Neuroimaging Informatics Technology Initiative
lists: IMOD
lists: Statistics Online Computational Resource
lists: signalml.org
lists: Mouse Biomedical Informatics Research Network
lists: NIH MRI Study of Normal Brain Development
lists: MGH-USC Human Connectome Project
lists: Fusion ICA Toolbox
lists: Corpus Callosum Thickness Profile Analysis Pipeline
lists: ABIDE
lists: Mouse Connectome Project
lists: NITRC-IR
lists: Open Connectome Project
lists: neurodebian
lists: NIMH Data Archive
lists: ANTS - Advanced Normalization ToolS
lists: XNAT Extras
lists: TrackVis
lists: Brain Connectivity Toolbox
lists: FieldTrip
lists: LONI Inspector
lists: BrainLiner
lists: OpenNeuro
lists: Biomedical Informatics Research Network
lists: McConnell Brain Imaging Center MNI Macaque Atlas
lists: SINOMO
lists: DONE: Detection of Outlier NEurons
lists: Neuro Bureau
lists: ADHD-200 Sample
lists: 1000 Functional Connectomes Project
lists: PubBrain
lists: CBRAIN
lists: ENIGMA: Enhancing Neuro Imaging Genetics Through Meta-Analysis
lists: Bisque
lists: 3D Slicer
lists: Internet Analysis Tools Registry
lists: Neuromorphometrics
lists: Analysis of Functional NeuroImages
lists: Automated Image Registration
lists: BASH4RfMRI
lists: MNE software
lists: Object-Oriented Development Interface for NMR
lists: NYU CSC TestRetest
lists: Optseq - fMRI Event Scheduler
lists: TOADS-CRUISE Brain Segmentation Tools
lists: MouseTracker
lists: Hammer And WML Modules for 3D Slicer
lists: ABC (Atlas Based Classification)
lists: Allen Brain Atlas API
lists: Viking Viewer for Connectomics
lists: ARCTIC
lists: ArtRepair for robust fMRI
lists: Automatic Registration Toolbox
lists: Artifact Detection Tools
lists: Segmentation of Hippocampus Subfields
lists: ASL data processing tool box
lists: Bioelectromagnetism Matlab Toolbox
lists: PyMVPA
lists: Human Imaging Database
lists: BrainImage Software
lists: Brede Toolbox
lists: Computerized Anatomical Reconstruction and Editing Toolkit
lists: BrainColor: Collaborative Open Labeling Online Resource
lists: Registry Builder Data Harmonization and Aggregation Tool
lists: PsychoPy
lists: NiftySim
lists: NiftyReg
lists: Neurobiological Image Management System
lists: BRAINSTools
lists: MeshValmet: Validation Metric for Meshes
lists: BrainSuite
lists: DW-MRI Random Walk Simulator
lists: Web Game for Collaborative Labeling
lists: BrainVoyager Brain Tutor
lists: POLGUI - Matlab Polhemus Interface
lists: BrainVoyager Brain Viewer
lists: NeuroPub Visualizer
lists: NODDI Matlab Toolbox
lists: MITK Diffusion
lists: Federal Interagency Traumatic Brain Injury Research Informatics System
lists: BrainMaps.org
lists: PRoNTo
lists: Scalable Brain Atlas
lists: NIH Human Connectome Project
lists: Mesh-based Monte Carlo (MMC)
lists: Matlab Neuroshare Library
lists: MRtrix
lists: MABMIS: Multi-Atlas Based Multi-Image Segmentation
lists: Monte Carlo eXtreme
lists: Whole Brain Catalog
lists: BCILAB
lists: ABSORB: Atlas Building by Self-Organized Registration and Bundling
lists: VAMCA
lists: SPM
lists: Low Resolution Electromagnetic Tomography
lists: SurfStat
lists: Cambridge Brain Activation
lists: CLEAVE
lists: CoCoMac
lists: fMRI Data Center
lists: Function BIRN
lists: EEGLAB
lists: BrainVISA / Anatomist
lists: MIPAV: Medical Image Processing and Visualization
lists: NeuroLens
lists: WFU PickAtlas
lists: Open Access Series of Imaging Studies
lists: BioSig: An Imaging Bioinformatics System for Phenotypic Analysis
lists: xjView: A Viewing Program For SPM
lists: Human Connectome Coordination Facility
lists: ASL spm8
lists: Integrated Manually Extracted Annotation
lists: JIST: Java Image Science Toolkit
lists: Functional Analysis of Diffusion Tensor
lists: AHEAD
lists: ANTsR
lists: 3DBar
lists: Cancer Imaging Archive (TCIA)
lists: Pediatric Imaging Neurocognition and Genetics
lists: Atlasing of the basal ganglia
lists: cmrep
lists: 3D DTI Atlas of the Rat Brain In Postnatal Day 5 14 and Adulthood
lists: AutoSeg
lists: BXH/XCEDE Tools
lists: Baby Brain Toolkit
lists: Best Practices for Software Development
lists: Brain Catalogue
lists: Draw3D and Meshinator
lists: Brain Segmentation Testing Protocol
lists: BrainNet Viewer
lists: BrainSolution
lists: Brainvox
lists: C8: Corpus Callosum Computations
lists: CAMINO-TRACKVIS
lists: CANDI Share: Schizophrenia Bulletin 2008
lists: CBS High-Res Brain Processing Tools
lists: CCSeg - Corpus Callosum Segmentation
lists: Cerebral Blood Flow Database and Analysis Pipeline
lists: Create DWI Atlas
lists: DFBIdb
lists: DIAMOND
lists: DICOM UploadGUI
lists: DOTS WM tract segmentation
lists: DTI Fiber Tract Statistics
lists: DW-MRI registration in FSL
lists: DbGaP Cleaner
lists: DentalTools
lists: Diffusion MRI - In-vivo and Phantom Data
lists: Diffusion MRI at DKFZ Heidelberg
lists: Diffusion Warp
lists: Disease State Prediction
lists: EEG human categorization data
lists: Epsilon Radial Networks
lists: FBIRN Image Processing Scripts
lists: FSL extensions
lists: False Discovery Rate Weighted
lists: Fiber Tracking Tool
lists: Fiber-tracking based on Finsler distance
lists: FiberViewerLight
lists: Finsler tractography module for Slicer
lists: Fluid Registration and Atlas Toolkit
lists: Framework for Open Programmatic Access
lists: Functional Connectivity Community
lists: Functional ROI Atlas
lists: Functional and Structural Neuroimaging Journals Listing
lists: GAMBIT
lists: GAMMA
lists: BRAINSMush
lists: GPU based affine registration
lists: GRETNA
lists: Generalized Covariance Analysis
lists: Generalized PPI Toolbox
lists: Group Information Guided ICA
lists: Groupwise Image Registration Toolbox
lists: HD Neuro-Informatics
lists: Hitachi2nirs
lists: IDeA Lab brain image processing suite
lists: INCF Neuroimaging Data Sharing
lists: INIA19 Primate Brain Atlas
lists: JHU Proj. in Applied Medical Imaging
lists: JIST Resources for Algorithm Development
lists: BRAINSROIAuto
lists: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI
lists: Landman NeuroImaging Tools
lists: Local Label Learning Segmentation
lists: MASI Label Fusion
lists: MASIMatlab
lists: MATLAB Tutorial on Diffusion Tensor MRI
lists: Multi-Echo Independent Component Regression Group-Level Connectivity Dataset
lists: Multi-fiber Reconstruction from DW-MRI
lists: NITRC Books
lists: Network Modification Tool Lite
lists: Non-rigid groupwise registration method
lists: Rockland Download Link Script
lists: Subject Order-Independent Group ICA
lists: Task Independent Fluctuations Discussion
lists: UNC Human DTI Brain Atlas
lists: BRAINSTestData
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lists: DWI/DTI Quality Control Tool: DTIPrep
lists: Diffusional Kurtosis Estimator
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lists: NCIGT Fast Imaging Library
lists: NeuroWeb - NeuroImaging Database
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lists: Slicer3 Module Rician noise filter
lists: UNC/Utah NAMIC DTI Fiber Analysis Framework
lists: caGWAS
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lists: elastix
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lists: MACH
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lists: NeuronJ: An ImageJ Plugin for Neurite Tracing and Quantification
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lists: Brain Entropy in space and time (BEst)
lists: Brainnetome Atlas Viewer
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lists: Clinical Toolbox for SPM
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lists: Displacement Field Viewer
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lists: ExPosition Packages
lists: Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation
lists: Forward: Accurate finite element electromagnetic head models
lists: freesurfR
lists: Functional Connectivity Analysis Tool for near-infrared spectroscopy data
lists: GazeReader
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lists: Generation R Pediatric MRI Resources
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lists: GLMdenoise: a fast, automated technique for denoising task-based fMRI data
lists: GraphVar: A toolbox for comprehensive graph analyses of functional brain connectivity
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lists: Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.0
lists: Iterative dual-regression with sparse prior
lists: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI
lists: KWScene: MRML-based Atlas and Scene Builder/Reader/Writer
lists: L-Neuron
lists: Laplace Beltrami Filter on QuadEdge Meshes
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lists: MRI Neuroanatomy Labeling Services
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lists: Neoseg
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lists: NIH Pediatric MRI Data Repository
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lists: Notion ResearchPACS
lists: NTU-DSI-122: a DSI template in ICBM-152 space
lists: OpenViBE
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lists: Orientation Distribution Function in Constant Solid Angle (CSA-ODF)
lists: Parkinsons Disease Discovery Database
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lists: Preprocessed Connectomes Project
lists: Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data
lists: Ruby NIfTI
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lists: SPIKECOR: fMRI tool for automated correction of head motion spikes
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lists: Multiscale Object Orientation Simulation Environment
lists: Striatal Subregional VOImap
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lists: Turbo-BrainVoyager
lists: CRL Unbiased and Deformable Spatiotemporal Atlas of the Fetal Brain
lists: UNC-Wisconsin Neurodevelopment Rhesus MRI Database
lists: Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX)
lists: VMTK in 3D Slicer
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lists: XFSL: An FSL toolbox
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lists: masked ICA (mICA) Toolbox
lists: Altered States Database
lists: User Friendly Functional Connectivity - UF²C
lists: Intra- and inter-scanner reliability of RS-fMRI BOLD and ASL with eyes closed vs. eyes open
lists: Region to Region
lists: Waxholm Space Atlas of the Sprague Dawley Rat Brain
lists: Nutil - Neuroimaging utilities
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lists: volBrain
lists: Waxholm Space
is affiliated with: Manual Align RTS2000
is related to: University of California; San Diego;National Center for Microscopy and Imaging Research - NCMIR
has parent organization: Harvard University; Cambridge; United States
has parent organization: NIH Blueprint for Neuroscience Research
is parent organization of: Licensing issues in software and data
is parent organization of: NITRC Enhanced Services
is parent organization of: Resource Ontology Discussion Group
is parent organization of: NITRC-IR
is parent organization of: 1000 Functional Connectomes Project
is parent organization of: NYU CSC TestRetest
is parent organization of: NITRC Books
is parent organization of: NITRC Community
is parent organization of: ABIDE
is parent organization of: COBRE
is parent organization of: Group Sparse Canonical Correlation Analysis
is parent organization of: Challenge Competitions Collection
is parent organization of: 1000 Functional Connectomes Project
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NIBIB U24 EB023398;
NIDA ;
NIH Blueprint for Neuroscience Research ;
NIMH ;
NINDS R44 NS074540 |
PMID:26044860
PMID:18999128 |
Free, Freely available |
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nif-0000-00202, r3d100010784, r3d100011515 |
https://doi.org/10.17616/R3W32N |
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SCR_003430 |
SciCrunch Registry |
Neuroimaging Informatics Tools and Resources Clearinghouse, , NeuroImaging Tools and Resources Collaboratory, Neuroimaging Informatics Tools Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools and Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools Resources Clearinghouse |
2026-09-26 02:13:30 |
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