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Proper Citation: TREES toolbox (RRID:SCR_010457)
Description: Software package, written in Matlab (Mathworks, Natick, MA), providing tools to automatically reconstruct neuronal branching from microscopy image stacks and to generate synthetic axonal and dendritic trees. It provides the basic tools to edit, visualize and analyze dendritic and axonal trees, methods for quantitatively comparing branching structures between neurons, and tools for exploring how dendritic and axonal branching depends on local optimization of total wiring and conduction distance.
Abbreviations: TREES toolbox
Synonyms: treestoolbox - A Matlab toolbox to generate edit visualize and analyze neuronal structure
Resource Type: software resource
Defining Citation: PMID:20700495
Keywords: neuronal branching, microscopy, neuron, matlab, visualization, rendering, reconstruction, analysis, modeling, morphology, dendrite, axon, computational neuroanatomy, tree
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