PeptideAtlas
Resource Report
Resource Website
100+ mentions
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PeptideAtlas (RRID:SCR_006783)
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PeptideAtlas
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data or information resource, data repository, storage service resource, database, service resource
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Multi-organism, publicly accessible compendium of peptides identified in a large set of tandem mass spectrometry proteomics experiments. Mass spectrometer output files are collected for human, mouse, yeast, and several other organisms, and searched using the latest search engines and protein sequences. All results of sequence and spectral library searching are subsequently processed through the Trans Proteomic Pipeline to derive a probability of correct identification for all results in a uniform manner to insure a high quality database, along with false discovery rates at the whole atlas level. The raw data, search results, and full builds can be downloaded for other uses. All results of sequence searching are processed through PeptideProphet to derive a probability of correct identification for all results in a uniform manner ensuring a high quality database. All peptides are mapped to Ensembl and can be viewed as custom tracks on the Ensembl genome browser. The long term goal of the project is full annotation of eukaryotic genomes through a thorough validation of expressed proteins. The PeptideAtlas provides a method and a framework to accommodate proteome information coming from high-throughput proteomics technologies. The online database administers experimental data in the public domain. You are encouraged to contribute to the database.
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proteomics, peptide, mass spectrometry, annotation, eukaryotic, genome, peptide sequence, high-throughput mass spectrometry, ensembl, peptideprophet, protein sequence, blood plasma, protein, eukaryotic cell, dna, bio.tools, FASEB list
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is used by: NIF Data Federation
is used by: ProteomeXchange
is recommended by: NIDDK Information Network (dkNET)
is recommended by: National Library of Medicine
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: Biositemaps
is listed by: re3data.org
is listed by: bio.tools
is listed by: Debian
is related to: Ensembl
is related to: ProteomeXchange
is related to: NIH Data Sharing Repositories
is related to: Integrated Manually Extracted Annotation
has parent organization: Institute for Systems Biology; Washington; USA
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NCI ;
NHGRI ;
NIGMS |
PMID:20013378
PMID:23215161
PMID:16381952
PMID:15642101 |
Public, The community can contribute to this resource, Acknowledgement requested |
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nif-0000-03266, r3d100010889, biotools:peptideatlas |
https://bio.tools/peptideatlas, https://doi.org/10.17616/R3BK61 |
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SCR_006783 |
Peptide Atlas, PeptideAtlas |
2026-08-01 12:03:20 |
479 |
Institute for Systems Biology; Washington; USA
Resource Report
Resource Website
10+ mentions
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Institute for Systems Biology; Washington; USA (RRID:SCR_011305)
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ISB
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institution
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The Institute for Systems Biology (ISB) was established to address the greatest challenge of 21st-century science understanding biological complexity. Since its founding in 2000, ISB has been a pioneering source of new knowledge, innovative technologies and computational tools, and creative ways of understanding, conducting and communicating science. An independent, non-profit organization poised between academia and industry, ISB is deeply committed to discovering knowledge and translating its benefits to society. ISB commercializes its discoveries; advances science education; helps society better understand the impacts of science and technology; and creates exciting new organizations that facilitate these transfers. ISB is catalyzing fundamental paradigm changes in how the life sciences and medicine are practiced globally. Researchers at ISB are generating results that can be applied to some of society''s most perplexing problems in medicine, global health and the environment. They are creating productive strategic partnerships with universities, companies and governments around the world, which are essential to attacking these challenges in a trans-disciplinary manner.
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is parent organization of: Cytoscape
is parent organization of: PeptideAtlas
is parent organization of: HDBase
is parent organization of: KAVIAR
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nlx_13040 |
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SCR_011305 |
Institute for Systems Biology |
2026-08-01 12:04:25 |
17 |
NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
Resource Report
Resource Website
100+ mentions
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NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases (RRID:SCR_012895)
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NIDDK
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government granting agency
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Center with mission to conduct and support medical research and research training and to disseminate science-based information on diabetes and other endocrine and metabolic diseases. The NIDDK supports a wide range of medical research through grants to universities and other medical research institutions across the country.
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diabetes, metabolic disease, digestive, kidney, endocrine, medical research
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recommends: Cell Image Library (CIL)
recommends: Biological General Repository for Interaction Datasets (BioGRID)
recommends: NIDDK Central Repository
recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D)
recommends: Metabolomics Workbench
recommends: PeptideAtlas
recommends: Network Data Exchange (NDEx)
recommends: Mouse Genome Informatics (MGI)
recommends: Zebrafish Information Network (ZFIN)
recommends: FlyBase
recommends: Database of Interacting Proteins (DIP)
recommends: WormBase
recommends: PhysioNet
recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
recommends: UniProt
recommends: dbSNP
recommends: DNA DataBank of Japan (DDBJ)
recommends: European Nucleotide Archive (ENA)
recommends: dbVar
recommends: ClinicalTrials.gov
recommends: European Variation Archive (EVA)
recommends: MGnify
recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL)
recommends: GenBank
recommends: Gene Expression Omnibus (GEO)
recommends: miRBase
recommends: Database of Genomic Variants Archive (DGVa)
recommends: Crystallography Open Database (COD)
recommends: Coherent X-Ray Imaging Data Bank (CXIDB)
recommends: Biological Magnetic Resonance Data Bank (BMRB)
recommends: Worldwide Protein Data Bank (wwPDB)
recommends: EMDataResource.org
recommends: NCBI Assembly Archive Viewer
recommends: Cambridge Crystallographic Data Centre (CCDC)
recommends: Inorganic Crystal Structure Database (ICSD)
recommends: Structural Biology Grid
recommends: ArrayExpress
recommends: GenomeRNAi
recommends: NCBI database of Genotypes and Phenotypes (dbGap)
recommends: Protein Circular Dichroism Data Bank (PCDDB)
recommends: Electron Microscopy Data Bank at PDBe (MSD-EBI)
recommends: PDBe - Protein Data Bank in Europe
recommends: PubChem BioAssay
recommends: Japanese Genotype-phenotype Archive (JGA)
recommends: ProteomeXchange
recommends: IntAct
recommends: European Genome phenome Archive
recommends: MetaboLights
recommends: PubChem Substance
recommends: The Immunology Database and Analysis Portal (ImmPort)
recommends: STRENDA
recommends: Kinetic Models of Biological Systems (KiMoSys)
recommends: FLOWRepository
recommends: Mass spectrometry Interactive Virtual Environment (MassIVE)
recommends: Global Proteome Machine Database (GPM DB)
recommends: Cancer Imaging Archive (TCIA)
recommends: German Neuroinformatics Node (G-Node)
recommends: 1000 Functional Connectomes Project
recommends: ChEMBL
recommends: Image Data Resource (IDR)
recommends: SICAS Medical Image Repository
recommends: ZENODO
recommends: Dataverse Network Project
recommends: NeuroMorpho.Org
recommends: Mendeley Data
recommends: NIMH Data Archive
recommends: NIH Figshare Archive
recommends: FigShare
recommends: National Addiction and HIV Data Archive Program (NAHDAP)
recommends: Dryad Digital Repository
recommends: Open Science Framework
recommends: OpenNeuro
recommends: SPARC Portal
lists: Mutant Mouse Resource and Research Center
lists: NIDDK Research Resources
is affiliated with: Cystic Fibrosis Research and Translation Centers
is affiliated with: Nutrition and Obesity Research Centers
is affiliated with: O'Brien Urology Centers
is affiliated with: Hematology Centers
is affiliated with: Polycystic Kidney Disease Research and Translation Centers
is affiliated with: O'Brien Kidney Centers
is affiliated with: Diabetes Research Centers
is affiliated with: Digestive Disease Centers
is affiliated with: Centers for Diabetes Translation Research
is affiliated with: Pediatric Centers of Excellence in Nephrology
is affiliated with: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study
is related to: Bridging Interventional Development Gaps
is related to: Polycystic Kidney Disease Research Resource Consortium
has parent organization: National Institutes of Health
is parent organization of: MTOPS Prostate Samples Analysis Consortium
is parent organization of: Symptom Score for Benign Prostatic Hyperplasia
is parent organization of: Type 1 Diabetes - Rapid Access to Intervention Development
is parent organization of: National Diabetes Education Program
is parent organization of: Family Investigation of Nephropathy of Diabetes
is parent organization of: Frequent Hemodialysis Network Daily Trial
is parent organization of: HemBase
is parent organization of: NIDDK- National Institute of Diabetes and Digestive and Kidney Diseases Obesity Resources
is parent organization of: dkCOIN
is parent organization of: National Kidney Disease Education Program
is parent organization of: Network of Minority Health Research Investigators
is parent organization of: National Endocrine and Metabolic Diseases Information Service
is parent organization of: National Diabetes Information Clearinghouse
is parent organization of: National Digestive Diseases Information Clearinghouse
is parent organization of: National Hematologic Diseases Information Service
is parent organization of: National Kidney and Urologic Diseases Information Clearinghouse
is parent organization of: Type 1 Diabetes Preclinical Testing Program
is parent organization of: Frequent Hemodialysis Network Nocturnal Trial
is parent organization of: Boston Area Community Health Survey
is parent organization of: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia
is parent organization of: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study
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Type 1 diabetes, Type 2 diabetes, Diabetes, Digestive disease, Kidney disease, Endocrine disease, Obesity, Blood disease, Liver disease, Urologic disease |
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nlx_inv_1005102 |
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SCR_012895 |
National Institute of Diabetes and Digestive and Kidney Diseases |
2026-08-01 12:04:41 |
140 |
ProteomeXchange
Resource Report
Resource Website
5000+ mentions
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ProteomeXchange (RRID:SCR_004055)
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consortium, data or information resource, catalog, data repository, storage service resource, portal, database, service resource, organization portal
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A data repository for proteomic data sets. The ProteomeExchange consortium, as a whole, aims to provide a coordinated submission of MS proteomics data to the main existing proteomics repositories, as well as to encourage optimal data dissemination. ProteomeXchange provides access to a number of public databases, and users can access and submit data sets to the consortium's PRIDE database and PASSEL/PeptideAtlas.
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consortium, database, proteomics, MS proteomics, protein, mass spectrometry, bio.tools, FASEB list
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uses: Proteomics Identifications (PRIDE)
uses: PeptideAtlas
is recommended by: NIDDK Information Network (dkNET)
is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
is listed by: bio.tools
is listed by: Debian
is affiliated with: Omics Discovery Index
is related to: Proteomics Identifications (PRIDE)
is related to: PeptideAtlas
is related to: SIB Swiss Institute of Bioinformatics
is related to: Mass spectrometry Interactive Virtual Environment (MassIVE)
is related to: European Bioinformatics Institute
is related to: ProteomeTools
is related to: Integrated Proteome Resources
has parent organization: European Bioinformatics Institute
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European Union 260558 |
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Public, The community can contribute to this resource |
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r3d100012122, nlx_158620, biotools:proteomexchange |
http://proteomecentral.proteomexchange.org, https://bio.tools/proteomexchange, https://doi.org/10.17616/R32D29 |
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SCR_004055 |
, ProteomeXchange, Proteome Exchange |
2026-08-01 12:07:36 |
5192 |
NIF Data Federation
Resource Report
Resource Website
10+ mentions
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NIF Data Federation (RRID:SCR_004834)
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Data Federation
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portal, data or information resource, service resource
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Service that partners with the community to expose and simultaneously drill down into individual databases and data sets and return relevant content. This type of content, part of the so called hidden Web, is typically not indexed by existing web search engines. Every record links back to the originating site. In order for NIF to directly query these independently maintained databases and datasets, database providers must register their database or dataset with the NIF Data Federation and specify permissions. Databases are concept mapped for ease of sharing and to allow better understanding of the results. Learn more about registering your resource, http://neuinfo.org/nif_components/disco/interoperation.shtm Search results are displayed under the Data Federation tab and are categorized by data type and nervous system level. In this way, users can easily step through the content of multiple resources, all from the same interface. Each federated resource individually displays their query results with links back to the relevant datasets within the host resource. This allows users to take advantage of additional views on the data and tools that are available through the host database. The NIF site provides tutorials for each resource, indicated by the Professor Icon professor icon showing users how to navigate the results page once directed there through the NIF. Additionally, query results may be exported as an Excel document. Note: NIF is not responsible for the availability or content of these external sites, nor does NIF endorse, warrant or guarantee the products, services or information described or offered at these external sites. Integrated Databases: Theses virtual databases created by NIF and other partners combine related data indexed from multiple databases and combine them into one view for easier browsing. * Integrated Animal View * Integrated Brain Gene Expression View * Integrated Disease View * Integrated Nervous System Connectivity View * Integrated Podcasts View * Integrated Software View * Integrated Video View * Integrated Jobs * Integrated Blogs For a listing of the Federated Databases see, http://neuinfo.org/mynif/databaseList.php or refer to the Resources Listed by NIF Data Federation table below.
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semantics, neuroscience, animal, annotation, antibody, biospecimen, brain activation foci, clinical trial, connectivity, dataset, disease, drug, grant, image, microarray, model, multimedia, negative data, pathway, people, plasmid, registry, software, brain region, cell, gene, molecule, multi-level, nervous system, nervous system function, model
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uses: MNI Podcasts
uses: Educational Resources in Neuroscience
uses: Mind Hacks
uses: BAMS Nested Regions
uses: Indeed
uses: NINDS Disorder Index
uses: Drug Design Data Resource
uses: PubMed Health
uses: This Week In Science
uses: Science Talk
uses: BAMS Connectivity
uses: Lady Scientist
uses: Psychology Corner
uses: Wired Science
uses: CENtral Science
uses: RetractionWatch.com
uses: The Guardian: Science Weekly
uses: H2SO4Hurts
uses: 60-Second Mind
uses: PLoS Blogs
uses: Clarity resources
uses: Open Source Brain
uses: Diabetic Complications Consortium
uses: Integrated Animals
uses: Kawasaki Disease Dataset
uses: EEGbase
uses: Integrated Models
uses: Lifespan Observations Database
uses: NIF Web Services
uses: NIF Blog
uses: ATCC
uses: Cerebellar Platform
uses: Brain Machine Interface Platform
uses: Rafael Yustes Laboratory
uses: ASAP
uses: NIH VideoCasting
uses: NIDA Data Share
uses: Neurofed
uses: Candida Genome Database
uses: Addgene
uses: ASPGD
uses: Glomerular Activity Response Archive
uses: WikiPathways
uses: AmiGO
uses: NeuroMorpho.Org
uses: Cell Centered Database
uses: Integrated
uses: Community Structure-Activity Resource
uses: ClinicalTrials.gov
uses: Ensembl
uses: GeneNetwork
uses: Avian Brain Circuitry Database
uses: EcoCyc
uses: Entrez Gene
uses: Zebrafish Information Network (ZFIN)
uses: Arredondo ANT fNIRS dataset1
uses: Grants.gov
uses: T3DB
uses: Simtk.org
uses: PharmGKB
uses: DrugBank
uses: Aging Genes and Interventions Database
uses: Gene Expression Nervous System Atlas
uses: SumsDB
uses: bioDBcore
uses: BioNumbers
uses: Gene Ontology
uses: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat
uses: Gramene
uses: Retina Project
uses: HomoloGene
uses: ArrayExpress
uses: Journal of Visualized Experiments
uses: Allen Mouse Brain Reference Atlas
uses: Gene Weaver
uses: Visiome Platform
uses: Developmental Therapeutics Program
uses: NeuroMab
uses: WormBase
uses: NeuronDB
uses: Integrated Grants
uses: studyforrest.org
uses: BrainInfo
uses: Mouse Phenome Database (MPD)
uses: NCBI Taxonomy
uses: NCBI Protein Database
uses: Psychoactive Drug Screening Program Ki Database
uses: Nuclear Receptor Signaling Atlas
uses: Brede Database
uses: NeuroImaging Tools and Resources Collaboratory (NITRC)
uses: Mouse Genome Informatics Transgenes
uses: Reactome
uses: Cell Image Library (CIL)
uses: BAMS Cells
uses: Synapse Web
uses: Integrated Videos
uses: NeuroVault
uses: Royal College of Psychiatrists Podcasts
uses: WU-Minn HCP 500 Subjects MR and MEG Release
uses: Data.gov Science and Research Data Catalog
uses: NITRC-IR
uses: One Mind Biospecimen Bank Listing
uses: Integrated Brain Gene Expression
uses: BrainSpan
uses: All In The Mind
uses: Scientific American Cross-Check
uses: PubChem
uses: NeuroPod
uses: BrainSpan
uses: Health.Data.gov
uses: Biointeractive
uses: UniProtKB
uses: Gray Matters
uses: dkCOIN
uses: Brain Science Podcast
uses: NIGMS Human Genetic Cell Repository
uses: DISCO
uses: GeneDB Lmajor
uses: TAIR
uses: ScienceNOW
uses: Daily Scan
uses: SGD
uses: Integrated Software
uses: BrainPod
uses: GeneDB Tbrucei
uses: MPO
uses: PANTHER
uses: Neurology Podcast
uses: Integrated Disease
uses: VMD
uses: UCSF Laboratory for Visual Neuroscience
uses: NIMH Chemical Synthesis and Drug Supply Program
uses: NIH Neuroscience Microarray Consortium
uses: SGN
uses: Protocol Online - Your labs reference book
uses: Integrated Podcasts
uses: OpenNeuro
uses: National Academy of Sciences Podcasts
uses: Beta Cell Biology Consortium
uses: Naturejobs
uses: Scientific American Guest Blog
uses: jobs.ac.uk
uses: New Scientist Jobs
uses: Science Careers
uses: Access-ScienceJobs.co.uk
uses: ScienceBlogs: Life Science
uses: ScienceBlogs: Brain and Behavior
uses: TheScienceJobs.com
uses: Nature Network Blogs
uses: The Guardian: Science
uses: LabSpaces
uses: ScienceBlogs: Medicine and Health
uses: Scientific American Observations
uses: Scientific American Bering in Mind
uses: QUEST
uses: Daring Nucleic Adventures - genegeek
uses: Oxford Science Blog
uses: Sciblogs
uses: New York Times - Well
uses: SciLogs
uses: Cassandras Tears
uses: BioPortfolio
uses: Now at NEJM
uses: 1000 Functional Connectomes Project
uses: Integrated Jobs
uses: Integrated Blogs
uses: JCVI CMR
uses: SciCrunch Registry
uses: Neuroskeptic
uses: CRCNS
uses: Expression Atlas of the Marmoset
uses: IXI dataset
uses: Integrated Auto-Extracted Annotation
uses: EU Clinical Trials Register
uses: Integrated Clinical Trials
uses: Human Brain Atlas
uses: goCognitive
uses: Law and Neuroscience
uses: International Mouse Phenotyping Consortium (IMPC)
uses: ClinVar
uses: Integrated Gene-Disease Interaction
uses: XNAT Central
uses: neuroelectro
uses: Integrated Nervous System Connectivity
uses: Antibody Registry
uses: OMIA - Online Mendelian Inheritance in Animals
uses: OMIM
uses: Science Podcast
uses: Mouse Genome Informatics (MGI)
uses: Monster
uses: NCBI
uses: Wired Science Blogs
uses: F1000 Posters
uses: Neurophilosophy
uses: Comparative Toxicogenomics Database (CTD)
uses: FlyBase
uses: GeneReviews
uses: GeneDB Pfalciparum
uses: Naturally Selected
uses: PomBase
uses: Pseudomonas Genome Database
uses: The Guardian: Science Videos
uses: Orphanet
uses: Dictyostelium discoideum genome database
uses: PeptideAtlas
uses: NeuroSynth
uses: neuropathology blog
uses: Genomes Unzipped
uses: National Institutes of Health Research Portfolio Online Reporting Tool
uses: BrainMaps.org
uses: It Takes 30
uses: Gait in Parkinson's Disease
uses: Physiobank
uses: Gait Dynamics in Neuro-Degenerative Disease Data Base
uses: American Journal of Psychiatry Podcasts
uses: Neurodatabase.org
uses: Brain Architecture Management System
uses: RanchoBiosciences
uses: ModelDB
uses: CoCoMac
uses: Olfactory Bulb Odor Map DataBase (OdorMapDB)
uses: Gene Expression Omnibus
uses: Caenorhabditis Genetics Center
uses: Labome
uses: Open Access Series of Imaging Studies
uses: Biological General Repository for Interaction Datasets (BioGRID)
uses: Olfactory Receptor DataBase
uses: T1DBase
uses: Gemma
uses: CellML Model Repository
uses: ResearchCrossroads
uses: Biocompare
uses: BioNOT
uses: Hays
uses: Research Blogging
uses: Discover Magazine
uses: PolygenicBlog
uses: Kawasaki Disease Dataset2
uses: Allen Mouse Brain Connectivity Atlas
uses: Integrated Manually Extracted Annotation
uses: Roadmap Epigenomics Project
uses: Integrated Cell Lines
uses: National Mouse Metabolic Phenotyping Centers
uses: Mendelspod
uses: Integrated Snippets
uses: Integrated Datasets
uses: Nature Podcast
uses: GWAS: Catalog of Published Genome-Wide Association Studies
uses: KEGG
uses: USC Multimodal Connectivity Database
uses: Inside NIA: A Blog for Researchers
uses: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
uses: NIF Registry Automated Crawl Data
uses: Genetic Analysis Software
uses: anage
uses: Intestinal Stem Cell Consortium
uses: Animal QTLdb
uses: elements of morphology
uses: Human Life-Table Database
uses: Clinical Genomic Database
uses: NIDDK Central Repository
uses: MONARCH Initiative
uses: Human Phenotype Ontology
is used by: SciCrunch
is used by: NIDDK Information Network (dkNET)
lists: AutDB
lists: Drug Related Gene Database
lists: Gene Ontology Tools
lists: CHEBI
is listed by: 3DVC
is related to: International Mouse Strain Resource
is related to: Internet Brain Volume Database
is related to: Resource Identification Portal
is related to: Rat Genome Database (RGD)
is related to: VISTA Enhancer Browser
is related to: NIH Human Pluripotent Stem Cell Registry
is related to: Zebrafish International Resource Center
is related to: Bloomington Drosophila Stock Center
is related to: Journal of Comparative Neurology Antibody database
has parent organization: Neuroscience Information Framework
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NIDA ;
NIH Blueprint for Neuroscience Research ;
U.S. Department of Health and Human Services HHSN27120080035C |
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Refer to individual databases |
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nlx_81822 |
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http://neuinfo.org/nif/nifgwt.html?query=* |
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SCR_004834 |
Neuroscience Information Framework Data Federation |
2026-08-01 12:08:28 |
28 |
re3data.org
Resource Report
Resource Website
50+ mentions
|
re3data.org (RRID:SCR_006782)
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re3data.org
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registry, data or information resource, database
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Global registry of research data repositories from all academic disciplines that allows the easy identification of appropriate research data repositories, both for data producers and users. Information icons display principal attributes of a repository that can be used for multi-faceted searches. Repository operators can suggest their infrastructures to be listed via a simple application form. A repository is indexed when the minimum requirements are met, i.e. mode of access to the data and repository, as well as the terms of use.
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vocabulary, registry, metadata standard, data sharing, FASEB list
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lists: Academic Seismic Portal at UTIG
lists: National Addiction and HIV Data Archive Program (NAHDAP)
lists: Alaska Climate Research Center
lists: MINT
lists: Internet Archive
lists: MatrixDB
lists: Animal QTLdb
lists: MPIDB
lists: BeetleBase
lists: Conserved Domain Database
lists: NeuroMorpho.Org
lists: Marine Geoscience Data System
lists: Cell Centered Database
lists: dbMHC
lists: Human Mortality Database
lists: UniProt
lists: Ligand-Gated Ion Channel Database
lists: EcoGene
lists: NCBI Genome
lists: ESTHER
lists: Genomes Online Database
lists: Gramene
lists: American FactFinder
lists: Human Proteinpedia
lists: IMGT/HLA
lists: Influenza Virus Resource
lists: DOE Joint Genome Institute
lists: MetaCrop
lists: ISPS Data Archive
lists: MorphBank
lists: miRBase
lists: Inter-university Consortium for Political and Social Research (ICPSR)
lists: Mouse Phenome Database (MPD)
lists: MorphoBank
lists: dbVar
lists: Open Science Framework
lists: TalkBank
lists: Nucleic Acid Database
lists: NCBI Taxonomy
lists: NCBI Protein Database
lists: PHI-base
lists: Alberta Geological Survey
lists: Protein Clusters
lists: Reactome
lists: Cell Image Library (CIL)
lists: eyeMoviePedia
lists: ALLBUS - German General Social Survey
lists: TPA
lists: Agency for Healthcare Research and Quality
lists: Alaska Satellite Facility
lists: Current German Weather Stations
lists: NCBI Structure
lists: BOLD
lists: PDBe - Protein Data Bank in Europe
lists: FishBase
lists: Nucleotide database
lists: NCBI BioSystems Database
lists: SGD
lists: Data.gov
lists: RHEA
lists: European Bioinformatics Institute
lists: NCBI Probe
lists: NCBI Nucleotide
lists: Database of Genomic Variants Archive (DGVa)
lists: NCBI Popset
lists: Whole Brain Atlas
lists: EMAGE Gene Expression Database
lists: Limited Access Datasets From NIMH Clinical Trials
lists: Tree of Life Web Project
lists: TreeBASE
lists: UCSC Genome Browser
lists: UniPROBE
lists: Crystallography Open Database (COD)
lists: National Archive of Computerized Data on Aging (NACDA)
lists: EOL - Encyclopedia of Life
lists: VectorBase
lists: caArray
lists: NCBI Epigenomics
lists: GWAS Central
lists: QTL Archive
lists: Proteome Commons
lists: XNAT Central
lists: 4TU.Datacentrum
lists: Amazon Web Services Public Data Sets
lists: ChemSpider
lists: DataStaR
lists: Rat Genome Database (RGD)
lists: Atlas of Living Australia
lists: Electron Microscopy Data Bank at PDBe (MSD-EBI)
lists: Phytozome
lists: FlyBase
lists: MaizeGDB
lists: Tuberculosis Database
lists: InterPro
lists: UNAVCO
lists: The Human Protein Atlas
lists: InnateDB
lists: UniSTS
lists: Launchpad
lists: Surveillance Epidemiology and End Results
lists: FAOSTAT
lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database
lists: HIstome: The Histone Infobase
lists: HPRD - Human Protein Reference Database
lists: Biological General Repository for Interaction Datasets (BioGRID)
lists: INFEVERS
lists: Reciprocal Net
lists: Africa Centre for Health and Population Studies
lists: BeeBase
lists: Biodiversity Heritage Library
lists: Databrary
lists: ACADIS Gateway
lists: ACEpepDB
lists: AIMS Data Centre
lists: ALADDIN
lists: ASTER
lists: Access to Archival Databases
lists: AidData
lists: Alaska Ocean Observing System
lists: J. Craig Venter Institute
lists: Wellcome Trust Sanger Institute; Hinxton; United Kingdom
lists: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
lists: myExperiment
lists: BioModels
lists: Addgene
lists: Antarctic and Southern Ocean Data Portal
lists: OpenTopography
lists: National Snow and Ice Data Center
lists: Biological Magnetic Resonance Data Bank (BMRB)
lists: dbSNP
lists: Ensembl
lists: DNA DataBank of Japan (DDBJ)
lists: Entrez Gene
lists: Zebrafish Information Network (ZFIN)
lists: GitHub
lists: DrugBank
lists: NCBI database of Genotypes and Phenotypes (dbGap)
lists: Gene Expression Nervous System Atlas
lists: SumsDB
lists: GenBank
lists: GermOnline
lists: HGNC
lists: Greengenes
lists: Neuroscience Information Framework
lists: HomoloGene
lists: ArrayExpress
lists: JASPAR
lists: WormBase
lists: Database of Interacting Proteins (DIP)
lists: EMDataResource.org
lists: ResearchCompendia
lists: Proteomics Identifications (PRIDE)
lists: RefSeq
lists: FAIRsharing
lists: PubChem
lists: FigShare
lists: UniGene
lists: NIMH Data Archive
lists: TAIR
lists: NCBI BioProject
lists: SMD
lists: OpenNeuro
lists: SoyBase
lists: Beta Cell Biology Consortium
lists: Biomedical Informatics Research Network
lists: Dryad Digital Repository
lists: Atlantic Canada Conservation Data Centre
lists: Agri-environmental Research Data Repository
lists: Australian Antarctic Data Centre
lists: Antibody Registry
lists: Mouse Genome Informatics (MGI)
lists: European Nucleotide Archive (ENA)
lists: NIDDK Central Repository
lists: GigaScience
lists: PeptideAtlas
lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation
lists: IntAct
lists: fMRI Data Center
lists: Gene Expression Omnibus
lists: Data and Specimen Hub (NICHD DASH)
lists: NIDA Data Share
lists: The NINDS Human Cell and Data Repository (NHCDR)
lists: Microphysiology Systems Database
lists: Dataverse Network Project
lists: Mendeley
lists: Vivli
lists: Metabolomics Workbench
lists: Qualitative Data Repository
lists: Protocols.io
lists: ZENODO
lists: STRENDA
lists: Code Ocean
lists: Brain Image Library
lists: German Collection of Microorganisms and Cell Cultures
lists: INPTDAT
lists: DataONE
lists: GBIF - Global Biodiversity Information Facility
lists: Lamont-Doherty Core Repository
lists: CaltechDATA
lists: Synapse
lists: Incorporated Research Institutions for Seismology
lists: Cancer Imaging Archive (TCIA)
lists: Mendeley Data
lists: UK Data Archive
lists: GigaDB
lists: PhysioNet
lists: Project Data Sphere
lists: Influenza Research Database (IRD)
lists: Simtk.org
lists: ResearchGate
lists: Virus Pathogen Resource (ViPR)
lists: Cambridge Structural Data Base
lists: 4TU.ResearchData
lists: Aperta Turkey Open Archive
lists: Polar Data Catalogue
lists: Arch
lists: Australian Data Archive
lists: Australian Ocean Data Network
lists: Barbara A. Mikulski Archive for Space Telescopes
lists: Aston Data Explorer
lists: Birkbeck Research Data
lists: B2SHARE Eudat
lists: BioHeritage National Science Challenge Data Repository
lists: Bolin Centre Database
lists: Brown Digital Repository
is listed by: FORCE11
is related to: U.S. Census Bureau
is related to: Rat Genome Database (RGD)
is related to: ResearchCompendia
has parent organization: Humboldt University of Berlin; Berlin; Germany
has parent organization: Karlsruhe Institute of Technology; Karlsruhe; Germany
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DFG |
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The community can contribute to this resource |
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nlx_152589 |
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SCR_006782 |
Registry of Research Data Repositories, re3data.org: Registry of Research Data Repositories, re3data |
2026-08-01 12:09:57 |
76 |
Biositemaps
Resource Report
Resource Website
1+ mentions
|
Biositemaps (RRID:SCR_001976)
|
Biositemaps
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software resource, service resource
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THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 27,2023. Biositemaps represent a mechanism for computational biologists and bio-informaticians to openly broadcast and retrieve meta-data about biomedical data, tools and services (i.e., biomedical resources) over the Internet. All Institutions with an interest in biomedical research can publish a biositemap.rdf file on their Internet site. The technology, developed by the Biositemaps Working Group of the NIH Roadmap National Centers of Biomedical Computing (NCBC), addresses (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining biomedical resources. Each site which intends to contribute to the inventory instantiates a file on its Internet site biositemap.rdf which conforms to a defined RDF schema and uses concepts from the Biomedical Resource Ontology to describe the resources. Each biositemap.rdf file is simply a list of controlled metadata about resources (software tools, databases, material resources) that your organization uses or believes are important to biomedical research. The key enabling technologies are the Information Model (IM) which is the list of metadata fields about each resource (resource_name, description, contact_person, resource_type,...) and the Biomedical Resource Ontology (BRO) which is a controlled terminology for the resource_typeand which is used to improve the sensitivity and specificity of web searches. Biositemaps blend the features of Sitemaps (enabling efficient web-content exploration) and RSS Feeds (a mechanism for wide and effective news dissemination). As a hybrid between Sitemaps and RSS feeds, the Biositemap infrastructure facilitates a decentralized, portable, extensible and computationally tractable generation and consumption of meta-data about existent, revised and new resources for biomedical computation. Web browsers, crawlers and robots can discover, accumulate, process, integrate and deliver Biositemaps content to (human or machine) users in a variety of graphical, tabular, computational formats. Biositemaps content allows such web browsers to pool resource-associated metadata from disparate and diverse sites and present it to the user in an integrated fashion. The Biositemaps protocol provides clues, information and directives for all Biositemap web harvesters that point to the existence and content of such biomedical resources at different sites.
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broadcast, data federation, defined rdf schema, infrastructure, meta-data, rdf, retrieve, biomedical, biositemap, sitemap
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lists: Adaptively Sampled Particle Fluids
lists: DicomWorks
lists: MEDx
lists: Medical Image Processing and Visualization
lists: Surface-Based Atlases
lists: RESNET
lists: SurfRelax
lists: FEATURE
lists: Cardiovascular Model Repository
lists: Simtk.org
lists: ConTrack
lists: Allopathfinder
lists: Molecular Simulation Trajectories Archive of a Villin Variant
lists: BioPortal
lists: SumsDB
lists: NeuronDB
lists: BrainInfo
lists: Protege
lists: i2b2 Cross-Institutional Clinical Translational Research project
lists: GeneChip Operating Software
lists: Honig Lab
lists: Proteomics Identifications (PRIDE)
lists: ASAP: the Alternative Splicing Annotation Project
lists: MiMI Plugin for Cytoscape
lists: Substructure Index-based Approximate Graph Alignment
lists: Proteome Commons Tranche repository
lists: caTIES - Cancer Text Information Extraction System
lists: REDCap
lists: miniTUBA
lists: Einstein-Montefiore ICTR Research Informatics Core
lists: T-profiler
lists: Stanford Translational Research Integrated Database Environment and Clinical Data Warehouse
lists: GCG/SeqWeb
lists: Solstice
lists: California National Primate Research Center
lists: BioGPS: The Gene Portal Hub
lists: Blox
lists: Subcellular Location Image Finder
lists: PeptideAtlas
lists: Clair library
lists: Lyngby
lists: SimTKCore
lists: Velos
lists: Ingenuity Pathway Analysis
lists: Philips
lists: Talktech
lists: SUN Interface Engine
lists: Quadramed - Medicus, Quantim
lists: Wisconsin National Primate Research Center
lists: i2b2 Research Data Warehouse
lists: Merge Healthcare Incorporated
lists: Clinical Trial Management Application
lists: Cerner Millenium
lists: Open Clinical Report Repository
lists: Quovadx, Inc.
lists: VectorValuedHistogramNormalizer
lists: Morphometry BIRN
lists: Talairach Daemon
lists: LONI Visualization Tool
lists: LONI Debabeler
lists: LONI Pipeline Processing Environment
lists: Brede Wiki
lists: medInria
lists: FreeSurfer
lists: ITK-SNAP
lists: VoxBo
lists: Ensembl
lists: MRIcron
lists: Synchronized Histological Image Viewing Architecture
lists: LONI ShapeViewer
lists: LONI ShapeTools
lists: FFT Library
lists: NUTMEG
lists: bioDBcore
lists: Mutant Mouse Resource and Research Center
lists: Brainscape
lists: MindSeer
lists: University of Southern California LONI Software
lists: Statistics Online Computational Resource
lists: NIH MRI Study of Normal Brain Development
lists: Ontology Development and Information Extraction
lists: Mindtouch DekiWiki
lists: National Mesothelioma Virtual Bank
lists: MGH-USC Human Connectome Project
lists: Fusion ICA Toolbox
lists: Biomedical Resource Ontology
lists: Biomedical Informatics Research Network
lists: 3D Slicer
lists: Analysis of Functional NeuroImages
lists: Automated Image Registration
lists: TOADS-CRUISE Brain Segmentation Tools
lists: BrainImage Software
lists: Brede Toolbox
lists: Whole Brain Catalog
lists: Low Resolution Electromagnetic Tomography
lists: Cambridge Brain Activation
lists: ModelDB
lists: fMRI Data Center
lists: EEGLAB
lists: 3DViewnix
lists: MIPAV: Medical Image Processing and Visualization
lists: NeuroLens
lists: WFU PickAtlas
lists: Protein Subcellular Location Image Database
lists: STRIDE Virtual Biospecimen Bank
lists: BrainVoyager
is related to: Biomedical Resource Ontology
is related to: Software Distribution Sets
is related to: REX
is related to: Rat Genome Database (RGD)
has parent organization: National Centers for Biomedical Computing
has parent organization: National Institutes of Health
is parent organization of: Resource Discovery System
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THIS RESOURCE IS NO LONGER IN SERVICE |
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nif-0000-10583 |
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SCR_001976 |
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2026-08-01 12:10:38 |
1 |
bio.tools
Resource Report
Resource Website
10+ mentions
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bio.tools (RRID:SCR_014695)
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data or information resource, catalog, database, software resource, software repository
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Community registry of software tools and data resources for life sciences. Tools and data services registry as community effort to document bioinformatics resources. Registry of software and databases, facilitating researchers from across spectrum of biological and biomedical science. When adding tools to registry, information including URL, contact information, resource function, field its relevant in, and its primary publication are required. Development is supported by ELIXIR - the European Infrastructure for Biological Information.
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Registry, software registry, biological tool, data services registry, services discovery portal, bio.tools
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lists: FACS
lists: Fusion Analyser
lists: AffyRNADegradation
lists: GUARDD
lists: GEOquery
lists: RNAcontext
lists: Patchwork
lists: SODOCK
lists: MIMOSA
lists: GraBCas
lists: SNAVI
lists: GENIE3
lists: Megraft
lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks
lists: PeptideProphet
lists: Quant
lists: VARiD
lists: ProteinProphet
lists: Flicker
lists: ARACHNE
lists: Micro-Analyzer
lists: riboPicker
lists: dbSTS
lists: POPBAM
lists: flowPeaks
lists: cn.FARMS
lists: Sequence Search and Alignment by Hashing Algorithm
lists: SAMBLASTER
lists: Pindel
lists: Mfuzz
lists: TAPyR
lists: ContEst
lists: PGS
lists: PEPPER
lists: FPSAC
lists: FlipFlop
lists: ProGlycProt
lists: MuTect
lists: TriageTools
lists: BLASR
lists: DSRC
lists: SRMA
lists: Bowtie
lists: StringTie
lists: PhenoFam
lists: SOAP
lists: SplitSeek
lists: MUSCLE
lists: SplicePlot
lists: Illuminator
lists: GimmeMotifs
lists: Skylign
lists: BreakSeq
lists: Barrnap
lists: SLOPE
lists: CUDA-EC
lists: QualiMap
lists: massiR
lists: OmicsOffice for NGS SeqSolve
lists: QUAST
lists: GenomicTools
lists: NGSUtils
lists: TileQC
lists: Sequedex
lists: PARalyzer
lists: BFCounter
lists: TALLYMER
lists: SNPchip
lists: VAAL
lists: ProbRNA
lists: ADMIXTURE
lists: SABER
lists: piCALL
lists: CYCLE
lists: limmaGUI
lists: DEXUS
lists: KAnalyze
lists: BeadDataPackR
lists: wateRmelon
lists: NGSrich
lists: OLIN
lists: fRMA
lists: MACAT
lists: affylmGUI
lists: DictyOGlyc
lists: GlyProt
lists: CisGenome
lists: ToppCluster
lists: AnimalTFDB
lists: oneChannelGUI
lists: YinOYang
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: asSeq
lists: FARMS
lists: GERMLINE
lists: unifiedWMWqPCR
lists: HAPLOPAINTER
lists: Biocatalogue - The Life Science Web Services Registry
lists: HOMOZYGOSITYMAPPER
lists: MetaBase
lists: PyLOH
lists: InterMine
lists: myExperiment
lists: pRESTO
lists: TANGO
lists: Prediction of Amyloid Structure Aggregation
lists: PhosphoSitePlus: Protein Modification Site
lists: CCAT
lists: BREAKDANCER
lists: FACTA+.
lists: PEDIGRAPH
lists: CQN
lists: CanSNPer
lists: SamSPECTRAL
lists: TEMP
lists: MEME Suite - Motif-based sequence analysis tools
lists: SNPAAMapper
lists: Pecan
lists: InteroPorc
lists: AffyPipe
lists: ADaCGH2
lists: DINDEL
lists: ASPGD
lists: Candida Genome Database
lists: BISC
lists: PurBayes
lists: SNVer
lists: Cake
lists: S-MART
lists: SHORTY
lists: Pathway Commons
lists: TcoF
lists: BEETL-fastq
lists: SBARS
lists: cpnDB: A Chaperonin Database
lists: cisRED: cis-regulatory element
lists: FlyFactorSurvey
lists: pymzML
lists: EchoBASE
lists: Blood Group Antigen Gene Mutation Database
lists: WebGeSTer DB
lists: RUbioSeq
lists: COSMIC - Catalogue Of Somatic Mutations In Cancer
lists: MethylAid
lists: ExomeDepth
lists: ZOOM
lists: Iterative Signature Algorithm
lists: ShotGun
lists: Pathview
lists: T3DB
lists: Autophagy Database
lists: rBiopaxParser
lists: QualitySNPng
lists: CAMERA - Collection of annotation related methods for mass spectrometry data
lists: libCSAM
lists: RopeBWT2
lists: NetPathMiner
lists: BioNumbers
lists: leeHom
lists: tweeDEseq
lists: ProRata
lists: Coding Potential Calculator
lists: CPTRA
lists: MFEprimer
lists: Distant Regulatory Elements
lists: HGNC
lists: GATE
lists: SuperPred: Drug classification and target prediction
lists: hot scan
lists: AltAnalyze - Alternative Splicing Analysis Tool
lists: Primer3Plus
lists: pairheatmap
lists: BioJS
lists: ms lims
lists: Eukaryotic Linear Motif
lists: Proteome Analyst Specialized Subcellular Localization Server
lists: HYDEN
lists: drFAST
lists: GeneFisher
lists: GreenPhylDB
lists: MiST - Microbial Signal Transduction database
lists: Pipeliner
lists: Gene Set Enrichment Analysis
lists: Piano
lists: Weighted Gene Co-expression Network Analysis
lists: FastSNP
lists: Triplex
lists: mrsFAST
lists: GenePattern
lists: NovelSeq
lists: QDNAseq
lists: MutDB
lists: SplicingCompass
lists: deFuse
lists: Database of Interacting Proteins (DIP)
lists: Assembly Based ReAligner
lists: MAGE-TAB
lists: ggbio
lists: miR-PREFeR
lists: NanoStringNorm
lists: MIPgen
lists: HTqPCR
lists: Parseq
lists: T-profiler
lists: Bpipe
lists: jmzTab
lists: L-Measure
lists: Snakemake
lists: PoPoolation
lists: MultiPhen
lists: PheWAS R Package
lists: Quantitative Enrichment of Sequence Tags
lists: ALDEx2
lists: INMEX
lists: InsertionMapper
lists: BSRD
lists: SeWeR - SEquence analysis using WEb Resources
lists: Segway - a way to segment the genome
lists: Stem Cell Discovery Engine
lists: TagDust
lists: Kdetrees
lists: Tree and reticulogram REConstruction
lists: NEWT
lists: DER Finder
lists: BioPig
lists: Selectome: a Database of Positive Selection
lists: Distributed String Mining Framework
lists: PILGRM
lists: Apo and Holo structures DataBase
lists: MLTreeMap
lists: MG-RAST
lists: miRNAKey
lists: SVseq
lists: Small Molecule Pathway Database
lists: Information Hyperlinked Over Proteins
lists: SVMerge
lists: BioSample Database at EBI
lists: MetaPhyler
lists: SOPRA
lists: NCBI BioSystems Database
lists: SLIQ
lists: G-BLASTN
lists: SSPACE
lists: AmphoraNet
lists: NCBI Structure: Cn3D
lists: DELLY
lists: RUM
lists: STING Report
lists: SoyBase
lists: SINA
lists: Strelka2
lists: RNA-eXpress
lists: Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets
lists: VFS
lists: ShoRAH
lists: READSCAN
lists: ERANGE
lists: GeneTalk
lists: ORMAN
lists: SEECER
lists: Scripture
lists: SPOT - Biological prioritization after a SNP association study
lists: NCBO Annotator
lists: CoPub
lists: SolexaQA
lists: PHAge Search Tool
lists: Knime4Bio
lists: MethPipe
lists: Bis-SNP
lists: GobyWeb
lists: EMAGE Gene Expression Database
lists: FusionMap
lists: Yabi
lists: GSNAP
lists: rQuant
lists: MethylViewer
lists: DistMap
lists: PASS
lists: mrFAST
lists: Kismeth
lists: Stampy
lists: TreQ
lists: FLASH
lists: SAMStat
lists: PRINSEQ
lists: MethylomeDB
lists: SOAPaligner/soap2
lists: TMA Navigator
lists: TRANSFAC
lists: SeqMap
lists: Bambino
lists: MicrobesOnline
lists: DMRforPairs
lists: TIGRFAMS
lists: CLIPZ
lists: SNPsandGO
lists: ToppGene Suite
lists: SeqTrace
lists: GoSurfer
lists: Jellyfish
lists: GoFish
lists: WEGO - Web Gene Ontology Annotation Plot
lists: ngsTools
lists: GraphProt
lists: SerbGO
lists: GoPubMed
lists: ccPDB - Compilation and Creation of datasets from PDB
lists: DOMMINO - Database Of MacroMolecular INteractiOns
lists: SOURCE
lists: DistiLD - Diseases and Traits in LD
lists: PePr
lists: Expression Profiler
lists: eQuilibrator
lists: DiseaseMeth
lists: Dr.VIS - Human Disease-Related Viral Integration Sites
lists: FunTree
lists: DBETH - Database for Bacterial ExoToxins for Humans
lists: BLESS
lists: GWASdb
lists: HFV Database
lists: IndelFR - Indel Flanking Region Database
lists: MIPModDB
lists: Europe PubMed Central
lists: CharProtDB: Characterized Protein Database
lists: IDEAL - Intrinsically Disordered proteins with Extensive Annotations and Literature
lists: MMMDB - Mouse Multiple tissue Metabolome DataBase
lists: ICEberg
lists: VirHostNet: Virus-Host Network
lists: Cascade
lists: Polbase
lists: VIRsiRNAdb
lists: 959 Nematode Genomes
lists: OGEE - Online GEne Essentiality database
lists: ProPortal
lists: SNPedia
lists: Newtomics
lists: HotRegion - A Database of Cooperative Hotspots
lists: SitEx
lists: ScerTF
lists: HMM-TM
lists: NRG-CING
lists: PRED-LIPO
lists: InterEvol database
lists: SpliceDisease
lists: RNA CoSSMos
lists: deepSNV
lists: PRED-GPCR
lists: RecountDB
lists: VICUNA
lists: ProRepeat
lists: MouseBook
lists: COEUS
lists: Predictive Networks
lists: PRED-SIGNAL
lists: Flycircuit
lists: COLT-Cancer
lists: ATRHUNTER
lists: GeneTrail
lists: epigenomix
lists: Pseudomonas Genome Database
lists: QCGWAS
lists: TSSer
lists: UMD-BRCA1/ BRCA2 databases
lists: PomBase
lists: Phytozome
lists: OMPdb
lists: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
lists: MSIsensor
lists: GWAMA
lists: SpliceTrap
lists: ViralZone
lists: waviCGH
lists: MyHits
lists: Decombinator
lists: CAPS Database
lists: ADGO
lists: zfishbook
lists: EagleView
lists: Gene Expression Database
lists: SRAdb
lists: BEDTools
lists: IMGT/GENE-DB
lists: RamiGO
lists: canSAR
lists: IMGT/LIGM-DB
lists: PLEXdb - Plant Expression Database
lists: COHCAP
lists: DARC - Database for Aligned Ribosomal Complexes
lists: Immune Epitope Database and Analysis Resource (IEDB)
lists: AutismKB
lists: RIKEN integrated database of mammals
lists: Myrna
lists: PhenoM - Phenomics of yeast Mutants
lists: BIGpre
lists: HIstome: The Histone Infobase
lists: TriTrypDB
lists: CuticleDB
lists: Midbody, Centrosome and Kinetochore
lists: SCOP: Structural Classification of Proteins
lists: Expression Database in 4D
lists: VIDA
lists: Database of Arabidopsis Transcription Factors
lists: Atlas of Genetics and Cytogenetics in Oncology and Haematology
lists: ESEfinder 3.0
lists: agriGO
lists: Taipan
lists: AgBase
lists: Chromosome 7 Annotation Project
lists: MEROPS
lists: T1DBase
lists: Hyper Cell Line Database
lists: GenoTan
lists: VISTA Browser
lists: lobSTR
lists: Candidate Genes to Inherited Diseases
lists: VISTA Enhancer Browser
lists: Gene Array Analyzer
lists: Network Analysis, Visualization and Graphing TORonto
lists: MuSiC
lists: MfunGD - MIPS Mouse Functional Genome Database
lists: eTBlast
lists: Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD)
lists: FGDP
lists: hiPathDB - human integrated Pathway DB with facile visualization
lists: miRNEST
lists: neXtProt
lists: NetOGlyc
lists: QuasiRecomb
lists: GMAP
lists: iMir
lists: MaCH-Admix
lists: SeqBuster
lists: LegumeIP
lists: DNAtraffic
lists: MicroSNiPer
lists: Pathema
lists: BeeBase
lists: Geneious
lists: MOSCPHASER
lists: SNPinfo Web Server
lists: elastix
lists: MIRA
lists: NEBcutter
lists: CopySeq
lists: CUPSAT
lists: Atlas2
lists: ALLPATHS-LG
lists: Velvet
lists: HomSI
lists: SVDetect
lists: omiRas
lists: HMCan
lists: HapFABIA
lists: WEBLOGO
lists: ZINBA
lists: SICER
lists: kmer-SVM
lists: MAnorm
lists: Pedimap
lists: nucleR
lists: CEQer
lists: MutSig
lists: DIANA-LncBase
lists: MethMarker
lists: PeakRanger
lists: PlnTFDB
lists: CloudBurst
lists: NPS
lists: MutationTaster
lists: ProDesign
lists: OligoArray
lists: ArrayAnalysis.org
lists: PatMaN
lists: SEAL
lists: Asterias
lists: RACE
lists: RobiNA
lists: CANGS
lists: PlantTFcat
lists: LitInspector
lists: HSLPred
lists: PSAR-Align
lists: CancerResource
lists: JiffyNet
lists: ECHO
lists: GPU-Meta-Storms
lists: GenoREAD
lists: TopHat-Fusion
lists: GeneStitch
lists: FABIA
lists: CPFP
lists: MFPaQ
lists: ICPL ESIQuant
lists: easyRNASeq
lists: PREDDIMER
lists: NetCoffee
lists: SlideSort-BPR
lists: miRPlant
lists: AlienTrimmer
lists: PRIDE Converter 2
lists: SNP ratio test
lists: compomics-utilities
lists: Allim
lists: PLEK
lists: ISDTool
lists: OBI-Warp
lists: LocalAli
lists: iceLogo
lists: multiplierz
lists: AMS
lists: NGSmethDB
lists: PoolHap
lists: DNaseR
lists: Btrim
lists: COBRApy
lists: NAIL
lists: CAZy- Carbohydrate Active Enzyme
lists: A5-miseq
lists: ANNOVAR
lists: GENSCAN
lists: PhosphoSiteAnalyzer
lists: MethylCoder
lists: featureCounts
lists: LOCAS
lists: Scalpel
lists: Cell motility
lists: Mouse Genome Database
lists: CloudAligner
lists: HeurAA
lists: GSA-SNP
lists: seqMINER
lists: PolyPhen: Polymorphism Phenotyping
lists: rqubic
lists: PlantNATsDB - Plant Natural Antisense Transcripts DataBase
lists: MitoBreak
lists: Cube-DB
lists: Death Domain database
lists: Telescoper
lists: Crossbow
lists: MToolBox
lists: GENE-counter
lists: BEADS
lists: PLAN2L
lists: INCLUSive
lists: CSAR
lists: ApiDB CryptoDB
lists: MACS
lists: NNcon
lists: KAVIAR
lists: GeneSigDB
lists: psRNATarget
lists: Composition Profiler
lists: MINAS - Metal Ions in Nucleic AcidS
lists: EGSEA
lists: Crystallography and NMR System (CNS)
lists: Morpheus
lists: IUPHAR/BPS Guide to Pharmacology
lists: RAST Server
lists: ProteomicsDB
lists: SPEX2
lists: LTR_Finder
lists: SCRATCH
lists: DSAP
lists: PALEOMIX
lists: Buccaneer
lists: QuantiSNP
lists: ProtTest
lists: MultiQC
lists: GeneWise
lists: DISEASES
lists: Off-Spotter
lists: oligo
lists: 3D-footprint
lists: SC3
lists: MS-GF+
lists: TISSUES
lists: TFBS
lists: CHiCAGO
lists: Poretools
lists: Membrane Protein Explorer
lists: FATCAT
lists: Bio-tradis
lists: ALTER
lists: HISAT2
lists: MetaMapR
lists: PhyD3
lists: Exonerate
lists: primers4clades
lists: Fastml
lists: Bamtools
lists: Genesis
lists: DISULFIND
lists: EnrichmentMap
lists: LoRDEC
lists: mentha
lists: IDEPI - IDentify EPItopes
lists: Oufti
lists: FluxModeCalculator
lists: eXpression2Kinases
lists: SMAGEXP
lists: ProCon - PROteomics CONversion
lists: Lifebit Deploit
lists: TRANSIT
lists: Splicing Express
lists: Microscopy Image Browser
lists: SARTools
lists: SPICE
lists: DINIES
lists: OmicsNet
lists: ngsRelate
lists: clusterProfiler
lists: NetworkAnalyst
lists: FRETBursts
lists: Thunder STORM
lists: ANOCVA
lists: ConsensusClusterPlus
lists: CIBERSORT
lists: CCTOP
lists: scran
lists: Rsubread
lists: Heatmapper
lists: BinPacker
lists: Subread
lists: UMI-tools
lists: Goseq
lists: PRSice
lists: ScaffMatch
lists: EMBOSSMatcher
lists: JAMM
lists: CentroidFold
lists: Gigwa
lists: FastProject
lists: GeSeq
lists: ComplexHeatmap
lists: PatchDock
lists: Proovread
lists: trimAl
lists: ExPASy ABCD database
lists: shinyGEO
lists: AmoebaDB
lists: Blood Exposome Database
lists: STRUCTURE
lists: NetPhos
lists: Geneshot
lists: ProtParam Tool
lists: HiC-Pro
lists: HingeProt
lists: Mousebytes
lists: iTOL
lists: ChiCMaxima
lists: SWISS-MODEL
lists: PASTEClassifier
lists: R/qtl2
lists: FlowCal
lists: Signaling Pathways Project
lists: GPS-SUMO
lists: Roary
lists: SpydrPick
lists: ProSA-web
lists: SIGNOR
lists: MaxAlign
lists: REDIportal
lists: EpiModel
lists: Protein Interactions Calculator
lists: rVista
lists: Minimap2
lists: PrognoScan
lists: Batch Web CD-Search Tool
lists: AlgPred
lists: GOnet
lists: GalaxyWEB
lists: GalaxyRefine
lists: Annotree
lists: khmer
lists: E-CRISP
lists: Robetta
lists: D-GENIES
lists: aroma.light
lists: Clustal Omega
lists: DESeq
lists: VICMpred
lists: Ray
lists: Apollo
lists: STAMP
lists: discoSnp
lists: vcflib
lists: IgBLAST
lists: BioPerl
lists: Genome BioInformatics Research Lab - gff2ps
lists: Rainbow
lists: Predictions for Entire Proteomes
lists: Stacks
lists: Clustal W2
lists: RNAhybrid
lists: Primer3
lists: SAMtools/BCFtools
lists: EBSeq
lists: biobambam
lists: DIALIGN
lists: Unipro UGENE
lists: Bowtie 2
lists: Artemis: Genome Browser and Annotation Tool
lists: WHAM
lists: Database of Secondary Structure Assignments
lists: Minia
lists: HTSeq
lists: RAxML
lists: Sickle
lists: Segemehl
lists: Staden Package
lists: Bismark
lists: NCBI BLAST
lists: Vienna RNA
lists: GBrowse
lists: ea-utils
lists: AmpliconNoise
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is listed by: Debian
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is related to: ms-utils.org
is related to: SUP
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European Union Horizon 2020 ELIXIR-EXCELERATE grant 676559;
Danish Ministry of Higher Education and Science |
DOI:10.1186/s13059-019-1772-6
PMID:26538599 |
Free, Freely available |
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biotools:bio.tools, r3d100013668 |
https://github.com/bio-tools/biotoolsRegistry/, https://bio.tools/bio.tools, https://doi.org/10.17616/R31NJN1G |
http://bio.tools |
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SCR_014695 |
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2026-08-01 12:05:06 |
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is used by: DisGeNET
recommends: Brain Image Library
recommends: Data Archive BRAIN Initiative
recommends: OpenNeuro
recommends: Brain Observatory Storage Service and Database (BossDB)
recommends: CRCNS
recommends: NCBI database of Genotypes and Phenotypes (dbGap)
recommends: NIMH Data Archive
recommends: ENCODE
recommends: Genotype-Tissue Expression
recommends: HMP Data Analysis and Coordination Center
recommends: Illuminating the Druggable Genome
recommends: Kids First Data Resource Portal
recommends: HMS LINCS Database
recommends: Metabolomics Workbench
recommends: Patient-Reported Outcomes Measurement Information System
recommends: Cancer Nanotechnology Laboratory (caNanoLab)
recommends: Cancer Imaging Archive (TCIA)
recommends: Network Data Exchange (NDEx)
recommends: eyeGENE
recommends: National Eye Institute (NEI) Commons
recommends: National Sleep Research Resource (NSRR)
recommends: CardioVascular Research Grid (CVRG)
recommends: AMP-AD Knowledge Portal
recommends: National Archive of Computerized Data on Aging (NACDA)
recommends: National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS)
recommends: Immune Tolerance Network TrialShare
recommends: The Immunology Database and Analysis Portal (ImmPort)
recommends: VectorBase
recommends: Virus Pathogen Resource (ViPR)
recommends: LONI Image and Data Archive
recommends: NeuroImaging Tools and Resources Collaboratory (NITRC)
recommends: Child Language Data Exchange System (CHILDES)
recommends: Data and Specimen Hub (NICHD DASH)
recommends: National Children's Study (NCS) Archive
recommends: PhonBank
recommends: Archive of Data on Disability to Enable Policy (ADDEP)
recommends: National Addiction and HIV Data Archive Program (NAHDAP)
recommends: Neuroscience Information Framework
recommends: National Institute on Drug Abuse Center for Genetic Studies
recommends: NIDA Data Share
recommends: AphasiaBank
recommends: FluencyBank
recommends: NIDDK Central Repository
recommends: NIDDK Information Network (dkNET)
recommends: Nuclear Receptor Signaling Atlas
recommends: Chemical Effects in Biological Systems (CEBS)
recommends: Cell Image Library (CIL)
recommends: PhysioNet
recommends: Transporter Classification Database
recommends: Biological General Repository for Interaction Datasets (BioGRID)
recommends: Federal Interagency Traumatic Brain Injury Research Informatics System
recommends: NeuroMorpho.Org
recommends: Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR)
recommends: The NINDS Human Cell and Data Repository (NHCDR)
recommends: ClinicalTrials.gov
recommends: dbSNP
recommends: dbVar
recommends: GenBank
recommends: Gene Expression Omnibus (GEO)
recommends: NCBI Sequence Read Archive (SRA)
recommends: 1000 Functional Connectomes Project
recommends: exRNA Atlas
recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D)
recommends: PeptideAtlas
recommends: Zebrafish Information Network (ZFIN)
recommends: FlyBase
recommends: Database of Interacting Proteins (DIP)
recommends: Mouse Genome Informatics (MGI)
recommends: UniProt
recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
recommends: European Nucleotide Archive (ENA)
recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL)
recommends: DNA DataBank of Japan (DDBJ)
recommends: UniProtKB
recommends: SPARC Portal
is related to: CureHunter
is related to: Entrez
has parent organization: National Institutes of Health
is parent organization of: MalariaWorld
is parent organization of: GenNav
is parent organization of: NIH Common Data Element Repository
is parent organization of: MEDLINE
is parent organization of: ClinicalTrials.gov
is parent organization of: Developmental and Reproductive Toxicology Database
is parent organization of: Directory of Health Organizations Online
is parent organization of: Haz-Map: Occupational Exposure to Hazardous Agents
is parent organization of: Hazardous Substances Data Bank
is parent organization of: Drug Information Portal
is parent organization of: NIH Data Sharing Repositories
is parent organization of: MeSH
is parent organization of: Unified Medical Language System
is parent organization of: NCBI
is parent organization of: MedlinePlus
is parent organization of: RxNorm
is parent organization of: Bibliography on Alternatives to the Use of Live Vertebrates in Biomedical Research and Testing
is parent organization of: Chemical Carcinogenesis Research Information System
is parent organization of: International Toxicity Estimates for Risk
is parent organization of: BLAST Assembled RefSeq Genomes
is parent organization of: Cross-Sectional and Longitudinal Aging Study
is parent organization of: OrbitProject
is parent organization of: Household Products Database
is parent organization of: Entrez Utilities
is parent organization of: Epidemiology of Chronic Disease in the Oldest Old
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nlx_inv_1005117 |
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SCR_011446 |
U.S. National Library of Medicine |
2026-08-01 12:04:09 |
391 |
Ensembl
Resource Report
Resource Website
10000+ mentions
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Ensembl (RRID:SCR_002344)
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data or information resource, database
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Collection of genome databases for vertebrates and other eukaryotic species with DNA and protein sequence search capabilities. Used to automatically annotate genome, integrate this annotation with other available biological data and make data publicly available via web. Ensembl tools include BLAST, BLAT, BioMart and the Variant Effect Predictor (VEP) for all supported species.
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collection, genome, dataset, database, vertebrate, eukaryotic, DNA, protein, sequence, search, automaticly, annotate, data, bio.tools, FASEB list
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is used by: NIF Data Federation
is used by: Animal QTLdb
is used by: ChannelPedia
is used by: Blueprint Epigenome
is used by: HmtPhenome
lists: Ensembl Covid-19
is listed by: OMICtools
is listed by: Biositemaps
is listed by: re3data.org
is listed by: LabWorm
is listed by: bio.tools
is listed by: Debian
is listed by: SoftCite
is related to: Ensembl Genomes
is related to: GermOnline
is related to: CandiSNPer
is related to: Human Splicing Finder
is related to: NGS-SNP
is related to: Sanger Mouse Resources Portal
is related to: DECIPHER
is related to: Ensembl Genomes
is related to: PeptideAtlas
is related to: AnimalTFDB
is related to: Bgee: dataBase for Gene Expression Evolution
is related to: FlyMine
is related to: Rat Gene Symbol Tracker
is related to: UniParc at the EBI
is related to: go-db-perl
is related to: UniParc
is related to: g:Profiler
is related to: RIKEN integrated database of mammals
is related to: VBASE2
is related to: p300db
is related to: ShinyGO
has parent organization: European Bioinformatics Institute
has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom
is parent organization of: Ensembl Metazoa
is parent organization of: Ensembl Variation
is parent organization of: Pre Ensembl
is parent organization of: Variant Effect Predictor
is parent organization of: Ensembl Bacteria
is parent organization of: Ensembl Plants
is parent organization of: Ensembl Fungi
is parent organization of: Ensembl Protists
is parent organization of: Ensembl Genome Browser
works with: Genotate
works with: CellPhoneDB
works with: Open Regulatory Annotation Database
works with: Database of genes related to Repeat Expansion Diseases
works with: TarBase
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Wellcome Trust ;
EMBL ;
European Union ;
FP7 ;
FP6 ;
MRC ;
NHGRI ;
BBSRC |
PMID:24316576
PMID:23203987 |
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nif-0000-21145, OMICS_01647, biotools:ensembl, r3d100010228 |
https://bio.tools/ensembl, https://sources.debian.org/src/ensembl/, https://doi.org/10.17616/R39K5B |
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SCR_002344 |
ENSEMBL |
2026-08-01 12:01:46 |
11652 |
NIDDK Information Network (dkNET)
Resource Report
Resource Website
10+ mentions
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NIDDK Information Network (dkNET) (RRID:SCR_001606)
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dkNET
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portal, data or information resource, database, community building portal
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The NIDDK Information Network (dkNET) is a community-based network to serve needs of basic and clinical investigators that includes large pools of data and research resources relevant to mission of National Institute of Diabetes and Digestive and Kidney Disease.
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dknet, data resource, diabetes, kidney, liver, disease, urology, hematology, digestive, nutrition, endocrine, obesity, metabolic
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uses: NIDDK Central Repository
uses: Addgene
uses: NIF Data Federation
uses: Antibody Registry
uses: Nuclear Receptor Signaling Atlas
uses: GenitoUrinary Development Molecular Anatomy Project
uses: Diabetic Complications Consortium
uses: National Mouse Metabolic Phenotyping Centers
uses: T1DBase
uses: Beta Cell Biology Consortium
uses: Grants.gov
uses: dkNET Community Pilot Funding Opportunities
uses: Integrated Grants
uses: ClinicalTrials.gov
uses: Integrated Animals
uses: Intestinal Stem Cell Consortium
recommends: Biological General Repository for Interaction Datasets (BioGRID)
recommends: Cell Image Library (CIL)
recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D)
recommends: NIDDK Central Repository
recommends: Network Data Exchange (NDEx)
recommends: PeptideAtlas
recommends: International Mouse Phenotyping Consortium (IMPC)
recommends: FlyBase
recommends: Metabolomics Workbench
recommends: Zebrafish Information Network (ZFIN)
recommends: Mouse Genome Informatics (MGI)
recommends: Database of Interacting Proteins (DIP)
recommends: UniProt
recommends: PhysioNet
recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
recommends: ClinicalTrials.gov
recommends: dbVar
recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL)
recommends: WormBase
recommends: dbSNP
recommends: GenBank
recommends: DNA DataBank of Japan (DDBJ)
recommends: Database of Genomic Variants Archive (DGVa)
recommends: NCBI Sequence Read Archive (SRA)
recommends: MGnify
recommends: European Variation Archive (EVA)
recommends: European Nucleotide Archive (ENA)
recommends: Gene Expression Omnibus (GEO)
recommends: NCBI Assembly Archive Viewer
recommends: Protein Circular Dichroism Data Bank (PCDDB)
recommends: miRBase
recommends: Trace Archive
recommends: UniProtKB
recommends: Coherent X-Ray Imaging Data Bank (CXIDB)
recommends: Electron Microscopy Data Bank at PDBe (MSD-EBI)
recommends: Worldwide Protein Data Bank (wwPDB)
recommends: Biological Magnetic Resonance Data Bank (BMRB)
recommends: Crystallography Open Database (COD)
recommends: PDBj - Protein Data Bank Japan
recommends: Inorganic Crystal Structure Database (ICSD)
recommends: Structural Biology Grid
recommends: NCBI database of Genotypes and Phenotypes (dbGap)
recommends: ArrayExpress
recommends: EMDataResource.org
recommends: Cambridge Crystallographic Data Centre (CCDC)
recommends: PDBe - Protein Data Bank in Europe
recommends: Japanese Genotype-phenotype Archive (JGA)
recommends: PubChem BioAssay
recommends: European Genome phenome Archive
recommends: GenomeRNAi
recommends: ProteomeXchange
recommends: MetaboLights
recommends: IntAct
recommends: FLOWRepository
recommends: Proteomics Identifications (PRIDE)
recommends: Global Proteome Machine Database (GPM DB)
recommends: Kinetic Models of Biological Systems (KiMoSys)
recommends: ChEMBL
recommends: Cancer Imaging Archive (TCIA)
recommends: Image Data Resource (IDR)
recommends: The Immunology Database and Analysis Portal (ImmPort)
recommends: PubChem Substance
recommends: NeuroMorpho.Org
recommends: Cancer Nanotechnology Laboratory (caNanoLab)
recommends: SICAS Medical Image Repository
recommends: Mass spectrometry Interactive Virtual Environment (MassIVE)
recommends: Dryad Digital Repository
recommends: ZENODO
recommends: NIH Figshare Archive
recommends: STRENDA
recommends: OpenNeuro
recommends: Influenza Research Database (IRD)
recommends: 1000 Functional Connectomes Project
recommends: Mendeley Data
recommends: Open Science Framework
recommends: Dataverse Network Project
recommends: NIMH Data Archive
recommends: FigShare
recommends: National Addiction and HIV Data Archive Program (NAHDAP)
recommends: SPARC Portal
recommends: Vivli
is recommended by: National Library of Medicine
lists: Diabetic Complications Consortium
lists: Nephromine
lists: LIPID Metabolites And Pathways Strategy
lists: METLIN
lists: NIDDK Inflammatory Bowel Disease Genetics Consortium
lists: Body Mass Index Calculator
lists: Symptom Score for Benign Prostatic Hyperplasia
lists: Genetics of Kidneys in Diabetes
lists: Type 1 Diabetes - Rapid Access to Intervention Development
lists: TEDDY
lists: Trans-Institute Angiogenesis Research Program
lists: Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease
lists: Current Research Information System
lists: Healthy People
lists: Acute Liver Failure Study Group
lists: Collaborative Islet Transplant Registry
lists: Diabetes Prevention Type 1
lists: Epidemiology of Diabetes Interventions and Complications
lists: NIH Division of Nutrition Research Coordination
lists: Human Nutrition Research Information Management
lists: Type 1 Diabetes Resource
lists: National Diabetes Education Program
lists: Pediatric Acute Liver Failure Study
lists: Globin Gene Server
lists: NIH Chronic Prostatitis Symptom Index
lists: Sequencing of Idd regions in the NOD mouse genome
lists: Look AHEAD
lists: Teen-Longitudinal Assessment of Bariatric Surgery
lists: Adult to Adult Living Donor Liver Transplantation Cohort Study
lists: Behavior Enhances Drug Reduction of Incontinence
lists: BARI 2D
lists: Childhood Liver Disease Research and Education Network
lists: Standardization of C-peptide measurements
lists: CKID A Prospective Cohort Study of Kidney Disease in Children
lists: Diabetes Prevention Program
lists: Diabetes Prevention Program Outcomes Study
lists: Irritable Bowel Syndrome Outcome Study
lists: Folic Acid for Vascular Outcome Reduction in Transplantation
lists: Type 1 Diabetes TrialNet
lists: Diabetes Research in Children Network
lists: Diabetic Retinopathy Clinical Research Network
lists: Clinical Islet Transplantation Study
lists: Nonalcoholic Steatohepatitis Clinical Research Network
lists: Drug-Induced Liver Injury Network
lists: Family Investigation of Nephropathy of Diabetes
lists: Frequent Hemodialysis Network Daily Trial
lists: HEALTHY study
lists: SISTEr
lists: Urinary Incontinence Treatment Network
lists: TINSAL-T2D
lists: TOMUS
lists: Type 1 Diabetes Genetics Consortium
lists: Center for Inherited Disease Research
lists: Action to Control Cardiovascular Disease Risk in Diabetes Follow-up Study (ACCORDION)
lists: Predicting Response to Standardized Pediatric Colitis Therapy (PROTECT)
lists: Lifestyle Interventions for Expectant Moms (LIFE-Moms)
lists: Hyperglycemia and Pregnancy Outcomes Follow-Up Study Consortium (HAPO-FUS)
lists: Nephrotic Syndrome Study Network (NEPTUNE)
lists: CKD Biomarkers Consortium
lists: Porphyria Consortium
lists: Vitamin D to Prevent Type 2 Diabetes (D2d)
lists: Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE)
lists: Symptoms of Lower Urinary Tract Dysfunction Research Network (LURN)
lists: Clinical Islet Transplantation Consortium (CITC)
lists: Restoring Insulin Secretion Consortium (RISE)
lists: Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI)
lists: Integrated Islet Distribution Program (IIDP)
lists: Human Islet Research Network (HIRN)
lists: Rare Kidney Stone Consortium (RKSC)
lists: Evaluating Predictors and Interventions in Sphincter of Oddi Dysfunction
lists: Efficacy and Mechanisms of Glutamine Dipeptide in the Surgical Intensive Care Unit
lists: Intestinal Stem Cell Consortium
lists: RiVuR
lists: Gastroparesis Clinical Research Consortium
lists: Urologic Diseases in America
lists: United States Renal Data System
lists: HALT PKD
lists: Chronic Renal Insufficiency Cohort Study
lists: Viral Resistance to Antiviral Therapy of Chronic Hepatitis C
lists: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C
lists: HALT-C Trial
lists: TRIGR
lists: Treatment Options for type 2 Diabetes in Adolescents and Youth
lists: Study of Nutrition in Acute Pancreatitis
lists: SEARCH for Diabetes in Youth
lists: Organ Procurement and Transplantation Network
lists: Nuclear Receptor Signaling Atlas
lists: NIH Common Fund
lists: Mutant Mouse Resource and Research Center
lists: GenitoUrinary Development Molecular Anatomy Project
lists: National Mouse Metabolic Phenotyping Centers
lists: IPD-MHC- Major Histocompatibility Complex
lists: High-dose Ursodiol Therapy of Primary Sclerosing Cholangitis
lists: Hepatitis B Research Network
lists: Functional Dyspepsia Treatment Trial
lists: Cooperative Study Group for Autoimmune Disease Prevention
lists: Clinical Outcomes Research Initiative
lists: BISC
lists: Beta Cell Biology Consortium
lists: Autoimmunity Centers of Excellence
lists: HemBase
lists: Longitudinal Assessment of Bariatric Surgery
lists: Minnesota Liver Tissue Cell Distribution System
lists: Knockout Mouse Project
lists: Immune Tolerance Network (ITN)
lists: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D)
lists: ReBuilding a Kidney
lists: GOA
lists: NURSA Transcriptomine
lists: STRING
lists: Nuclear Receptor Cistrome
lists: EuReGene
lists: Embryo Images Normal and Abnormal Mammalian Development
lists: Stem Cell Genome Anatomy Projects
lists: Eurexpress
lists: Gene Expression Database
lists: ToppGene Suite
lists: GATACA GUDMAP Gene Explorer
lists: Knockout Mouse Project Repository
lists: Cornell Heart Lung Blood Resource for Optogenetic Mouse Signaling (CHROMus)
lists: International Mouse Phenotyping Consortium (IMPC)
lists: Juvenile Diabetes Research Foundation
lists: NIDDK Central Repository
lists: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB)
lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC)
lists: T1DBase
lists: NCI Specimen Resource Locator
lists: NCBI database of Genotypes and Phenotypes (dbGap)
lists: caHUB
lists: T1D Exchange
lists: NCBI
lists: LANDMark BioBanks
lists: Diabetes Research Centers
lists: Network for Pancreatic Organ Donors with Diabetes
lists: Nutrition and Obesity Research Centers
lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Antibody Validation and Vector Core
lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Cell Culture and Engineering
lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Clinical and Translational Core Resource
lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Mouse Models and Biobank
lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Bioinformatics Resource
lists: Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology Core Facility
lists: Boston Area Diabetes Endocrinology Research Center Metabolic Physiology and Energy Balance Core Facility
lists: Boston Area Diabetes Endocrinology Research Center Molecular Biology
lists: Boston Area Diabetes Endocrinology Research Center Pancreatic Islet
lists: Boston Area Diabetes Endocrinology Research Center
lists: Boston Area Diabetes Endocrinology Research Center Transgenic
lists: Boston Children's Hospital Center of Excellence in Molecular Hematology Mouse Embryonic Stem(ES) Cell and Gene Targeting Core
lists: Boston Children's Hospital Center of Excellence in Molecular Hematology
lists: Boston Children's Hospital Center of Excellence in Molecular Hematology Stem Cell Engineering and Analysis Core
lists: Boston Children's Hospital Center of Excellence in Molecular Hematology Zebrafish Core
lists: Boston Nutrition and Obesity Research Centers Adipose Biology and Nutrient Metabolism Core
lists: Boston Nutrition and Obesity Research Centers Administrative Core
lists: Boston Nutrition and Obesity Research Centers Epidemiology and Genetics Core
lists: Boston Nutrition and Obesity Research Centers Functional Genomics and Bioinformatics Core
lists: Boston Nutrition and Obesity Research Centers
lists: Boston Nutrition and Obesity Research Centers Transgenic Core
lists: Center for American Indian and Alaska Native Diabetes Translational Research Administrative Core
lists: Center for American Indian and Alaska Native Diabetes Translational Research National Resource
lists: Center for American Indian and Alaska Native Diabetes Translational Research Resource
lists: Center for American Indian and Alaska Native Diabetes Translational Research
lists: Center for Iron and Heme Disorders at the University of Utah Administrative Core
lists: Center for Iron and Heme Disorders at the University of Utah Iron and Heme Core
lists: Center for Iron and Heme Disorders at the University of Utah Metabolomics Core
lists: Center for Iron and Heme Disorders at the University of Utah Mutation Generation and Detection Core
lists: Center for Iron and Heme Disorders at the University of Utah
lists: Center for the Study of Inflammatory Bowel Disease Clinical Core
lists: Center for the Study of Inflammatory Bowel Disease Genetic Animal Models Core
lists: Center for the Study of Inflammatory Bowel Disease Genetics Genomics and Molecular Biology Core
lists: Center for the Study of Inflammatory Bowel Disease Immunology Core
lists: Center for the Study of Inflammatory Bowel Disease Morphology Core
lists: Center for the Study of Inflammatory Bowel Disease
lists: Centers for Diabetes Translation Research
lists: Chicago Center for Diabetes Translation Research Health Disparities and Community-Based Participatory Research Core
lists: Chicago Center for Diabetes Translation Research Outcomes Improvement Core
lists: Chicago Center for Diabetes Translation Research Quantitative Analysis Core
lists: Chicago Center for Diabetes Translation Research
lists: Cincinnati Digestive Health Center Clinical Component-Data Analysis and Management
lists: Cincinnati Children's Hospital Digestive Health Center
lists: Cincinnati Digestive Health Center Integrative Morphology
lists: Cincinnati Digestive Health Center Pluripotent Stem Cell and Organoid Core
lists: Cincinnati Digestive Health Center
lists: Cleveland Digestive Diseases Research Core Center
lists: Cleveland Digestive Diseases Research Core Facilities
lists: Columbia Diabetes Research Center Advanced Tissue Pathology and Imaging Core Facility
lists: Columbia Diabetes Research Center Flow Cytometry and Cell Sorting Core Facility
lists: Columbia Diabetes Research Center Mouse Metabolic Function and Phenotyping Core Facility
lists: Columbia Diabetes Research Center
lists: Columbia Diabetes Research Center Translational Biomarker Analytical Core Facility
lists: Columbia University George M. O'Brien Urology Center
lists: CURE - Digestive Diseases Research Center Administrative Core
lists: CURE - Digestive Diseases Research Center Animal Models Core
lists: CURE - Digestive Diseases Research Center Human Studies Core
lists: CURE - Digestive Diseases Research Center Molecular Biology and Peptidomics Core
lists: CURE - Digestive Diseases Research Center Morphology and Imaging Core
lists: CURE - Digestive Diseases Research Center
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Clinical Translational Core
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Histology Core
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Michael Hooker Microscopy Core Facility
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Molecular Biology Core
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Mouse Models Core
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Mucus and Mucin Biochemistry and Biophysics Core
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Pre-Clinical Core
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center
lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Tissue Procurement and Cell Culture Core
lists: Cystic Fibrosis Center - University of California San Francisco
lists: Cystic Fibrosis Center University of Pittsburgh
lists: Cystic Fibrosis Center - University of Washington Administrative and Enrichment Core
lists: Cystic Fibrosis Center - University of Washington Clinical Core
lists: University of Washington Genomics Core Cystic Fibrosis Research Translation Center and Research Development Program
lists: Cystic Fibrosis Center - University of Washington Host Response Core
lists: Cystic Fibrosis Center - University of Washington Microbiology Core
lists: Cystic Fibrosis Center - University of Washington
lists: Cystic Fibrosis Research and Translation Centers
lists: Digestive Disease Centers
lists: Duke O'Brien Center for Kidney Research Animal Models Core
lists: Duke O'Brien Center for Kidney Research Clinical and Translational Core
lists: Duke O'Brien Center for Kidney Research Renal Genomics Core
lists: Duke O'Brien Center for Kidney Research
lists: Einstein-Mount Sinai Diabetes Research Center Animal Physiology Core Facility
lists: Einstein-Mount Sinai Diabetes Research Center Biomarker Analytic Research Core Facility
lists: Einstein-Mount Sinai Diabetes Research Center Human Islet and Adenovirus Core Facility
lists: Einstein-Mount Sinai Diabetes Research Center
lists: Einstein-Mount Sinai Diabetes Research Center Stable Isotope and Metabolomics Core Facility
lists: Einstein-Mount Sinai Diabetes Research Center Translational Research Core Facility
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Antibody Technology
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Arnold Library
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Comparative Medicine
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Electron Microscopy
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Experimental Histopathology Shared Resource
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Flow Cytometry
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Genomics Shared Resource
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Glassware Services
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Proteomics Resource
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Research Freezers and Sample Storage Resource
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Scientific Imaging
lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Specimen Processing/Research Cell Bank
lists: George M. O'Brien Kidney Center at Yale Human Genetics and Clinical Research Core
lists: George M. O'Brien Kidney Center at Yale Mouse Genetics and Cell Line Core
lists: George M. O'Brien Kidney Center at Yale Renal Physiology Core
lists: George M. O'Brien Kidney Center at Yale
lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Animal Models Core
lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Cell Biology and Imaging Core
lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Clinical and Translational Core
lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Physiology Core
lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center
lists: Georgia Center for Diabetes Translation Research Design and Evaluation Core Facility
lists: Georgia Center for Diabetes Translation Research Disparities Core
lists: Georgia Center for Diabetes Translation Research Engagement and Behavior Change Core
lists: Georgia Center for Diabetes Translation Research
lists: Gregory Fleming James Cystic Fibrosis Research Center Assay Core
lists: Gregory Fleming James Cystic Fibrosis Research Center Cell Model and Evaluation Core
lists: Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Animal Models Core
lists: Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Clinical and Translational Core
lists: Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Transmembrane Conductance Regulator Expression Core
lists: Gregory Fleming James Cystic Fibrosis Research Center
lists: Health Delivery Systems Center for Diabetes Translational Research California State Resource Program
lists: Health Delivery Systems Center for Diabetes Translational Research Diabetes and Obesity Prevention Core
lists: Health Delivery Systems Center for Diabetes Translational Research Health Disparities Core
lists: Health Delivery Systems Center for Diabetes Translational Research Health Information Technology Core
lists: Health Delivery Systems Center for Diabetes Translational Research
lists: Hematology Centers
lists: Indiana University School of Medicine Center for Diabetes and Metabolic Diseases Islet and Physiology Core Facility
lists: Indiana Diabetes Research Center Microscopy Core Facility
lists: Indiana Diabetes Research Center
lists: Indiana Diabetes Research Center Swine Core
lists: Indiana Diabetes Research Center Translation Core Facility
lists: Indiana O'Brien Center for Advanced Microscopic Analysis Administration Core
lists: Indiana O'Brien Center for Advanced Microscopic Analysis Biosensor Development Core
lists: Indiana O'Brien Center for Advanced Microscopic Analysis Digital Image Analysis Core
lists: Indiana O'Brien Center for Advanced Microscopic Analysis Education Core
lists: Indiana O'Brien Center for Advanced Microscopic Analysis Intravital Microscopy Core
lists: Indiana O'Brien Center for Advanced Microscopic Analysis Probe Delivery Core
lists: Indiana O'Brien Center for Advanced Microscopic Analysis
lists: Indiana University Cooperative Center of Excellence in Hematology Angiogenesis Core
lists: Indiana University Cooperative Center of Excellence in Hematology Experimental Mouse Resources Core
lists: Indiana University School of Medicine Flow Cytometry Core Facility
lists: Indiana University Cooperative Center of Excellence in Hematology Optical Microscopy Core
lists: Indiana University Cooperative Center of Excellence in Hematology
lists: Johns Hopkins University - University of Maryland Diabetes Research Center Administrative Core
lists: Johns Hopkins University - University of Maryland Diabetes Research Center Cell Biology Core
lists: Johns Hopkins University - University of Maryland Diabetes Research Center Gene Editing Core
lists: Johns Hopkins University - University of Maryland Diabetes Research Center Health and Populations Science Core
lists: Johns Hopkins University - University of Maryland Diabetes Research Center Integrated Physiology Core
lists: Johns Hopkins University - University of Maryland Diabetes Research Center Molecular and Translational Genomics Core
lists: Johns Hopkins University - University of Maryland Diabetes Research Center
lists: Joslin Diabetes Center Advanced Genomics and Genetics Core Facility
lists: Joslin Diabetes Center Advanced Microscopy Core Facility
lists: Joslin Diabetes Center Animal Physiology Core Facility
lists: Joslin Diabetes Center Bioinformatics and Biostatistics Core
lists: Joslin Diabetes Center Enrichment Core
lists: Joslin Diabetes Center Flow Cytometry Core Facility
lists: Joslin Diabetes Center Induced Pluripotent Stem Cell Core
lists: Joslin Diabetes Center
lists: Marion Bessin Liver Research Center Animal Models Stem Cells and Cell Therapy
lists: Marion Bessin Liver Research Center Genetic Engineering and Gene Therapy
lists: Marion Bessin Liver Research Center Imaging and Cell Structure
lists: Marion Bessin Liver Research Center
lists: Mayo Clinic Center for Cell Signaling in Gastroenterology Clinical Core
lists: Mayo Clinic Center for Cell Signaling in Gastroenterology Gene Editing and Cell Engineering Core
lists: Mayo Clinic Center for Cell Signaling in Gastroenterology Optical Microscopy Core
lists: Mayo Clinic Center for Cell Signaling in Gastroenterology
lists: Mayo Clinic O'Brien Urology Center Biostatistics and Epidemiology Core
lists: Mayo Clinic O'Brien Urology Center Imaging Core
lists: Mayo Clinic O'Brien Urology Center
lists: Mayo Clinic O'Brien Urology Center Urine Phenotyping Core
lists: Michigan Center for Diabetes Translational Research Administrative Core Facility
lists: Michigan Center for Diabetes Translational Research Intervention and Technology Research Core
lists: Michigan Center for Diabetes Translational Research Leveraging Community, Peer, and Family Support Core Facility
lists: Michigan Center for Diabetes Translational Research Methods and Measurements Core
lists: Michigan Diabetes Research Center Animal Studies Core
lists: Michigan Diabetes Research Center Clinical Core Facility
lists: Michigan Diabetes Research Center Microscopy and Image Analysis Core Facility
lists: Michigan Diabetes Research Center Molecular Genetics Core Facility
lists: Michigan Diabetes Research Center OMICS Core
lists: Michigan Diabetes Research Center
lists: Mid-Atlantic Nutrition Obesity Research Center Biological Mechanisms and Functional Genomics Core
lists: Mid-Atlantic Nutrition Obesity Research Center Biostatistics and Medical Informatics Subcore
lists: Mid-Atlantic Nutrition Obesity Research Center Clinical and Translational Research Core
lists: Mid-Atlantic Nutrition Obesity Research Center Molecular Genetics and Nutrigenomics Core
lists: Mid-Atlantic Nutrition Obesity Research Center
lists: MMPC-University of California Davis Administrative Core
lists: MMPC-University of California Davis Animal Care Surgery and Pathology Core
lists: MMPC-University of California Davis Endocrinology and Metabolism Core
lists: MMPC-University of California Davis Energy Balance Exercise and Behavior Core
lists: MMPC-University of California Davis Microbiome and Host Response Core
lists: MMPC-University of California Davis
lists: MMPC-University of Cincinnati Medical Center Cardiovascular and Renal Function Core
lists: MMPC-University of Cincinnati Medical Center Energy Metabolism Food Intake and Body Weight Regulation Core
lists: MMPC-University of Cincinnati Medical Center Lipid Lipoprotein and Glucose Metabolism Core
lists: MMPC-University of Cincinnati Medical Center
lists: MMPC-University of Massachusetts Medical School Analytical Core
lists: MMPC-University of Massachusetts Medical School Animal Care Core
lists: MMPC-University of Massachusetts Medical School Cardiovascular Core
lists: MMPC-University of Massachusetts Medical School Humanized Mouse Cell Transplantation and Assessment Core
lists: MMPC-University of Massachusetts Medical School Islet Core
lists: MMPC-University of Massachusetts Medical School Metabolism Core
lists: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility
lists: MMPC-University of Michigan Medical School Animal Care and Germ-Free Mouse Core
lists: MMPC-University of Michigan Medical School Metabolism Bariatric Surgery and Behavior Core
lists: MMPC-University of Michigan Medical School Microbiome Core
lists: MMPC-University of Michigan Medical School Microvascular Complications Core
lists: MMPC-University of Michigan Medical School
lists: MMPC-Vanderbilt University School of Medicine Analytical Resources Core
lists: MMPC-Vanderbilt University School of Medicine Animal Health and Welfare Core
lists: MMPC-Vanderbilt University School of Medicine Cardiovascular Pathophysiology Core
lists: MMPC-Vanderbilt University School of Medicine Metabolic Regulation Core
lists: MMPC-Vanderbilt University School of Medicine
lists: Molecular Biology and Next Generation Technology
lists: Mucosal HIV and Immunobiology Center Genetically-Defined Microbe Core
lists: Mucosal HIV and Immunobiology Center Gnotobiotic and Genetically-Engineered Mouse Core
lists: Mucosal HIV and Immunobiology Center Molecular Pathology and Human Cell and Tissue Core
lists: Mucosal HIV and Immunobiology Center
lists: New York Obesity Nutrition Research Center Animal Phenotyping Core
lists: New York Obesity Nutrition Research Center Human Phenotyping Core
lists: New York Obesity Nutrition Research Center
lists: New York Regional Center for Diabetes Translation Research Latino Network for Diabetes Translational Research
lists: New York Regional Center for Diabetes Translation Research Life Course Methodology Core
lists: New York Regional Center for Diabetes Translation Research Population Health and Health Systems Core
lists: New York Regional Center for Diabetes Translation Research
lists: New York Regional Center for Diabetes Translation Research Translational Intervention Methodology Core
lists: Nutrition and Obesity Research Centers at Harvard Administrative Core
lists: Nutrition and Obesity Research Centers at Harvard Genomics and Cell Biology Core
lists: Nutrition and Obesity Research Centers at Harvard Metabolic Imaging Core
lists: Nutrition and Obesity Research Centers at Harvard Metabolic Phenotyping Core
lists: Nutrition and Obesity Research Centers at Harvard
lists: Nutrition and Obesity Research Centers at Harvard Statistical Consultation
lists: O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston Rodent Urinary Function Testing Core
lists: O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston
lists: O'Brien Kidney Centers
lists: O'Brien Urology Centers
lists: Pediatric Centers of Excellence in Nephrology at Cincinnati Children's Hospital Medical Center Biomarker Core
lists: Pediatric Centers of Excellence in Nephrology at Cincinnati Children's Hospital Medical Center Gene Expression Core
lists: Cincinnati Children's Hospital Pediatric Center of Excellence
lists: Pediatric Centers of Excellence in Nephrology at Cincinnati Children's Hospital Medical Center
lists: Pediatric Centers of Excellence in Nephrology at Duke Division of Pediatric Nephrology
lists: Pediatric Centers of Excellence in Nephrology at University of Virginia
lists: Penn Diabetes Research Center Functional Genomics Core
lists: Penn Diabetes Research Center Metabolomics Core
lists: Penn Diabetes Research Center Mouse Phenotyping Physiology and Metabolism Core
lists: University of Pennsylvania School of Medicine Penn Diabetes Research Center Pancreatic Islet Cell Biology Core Facility
lists: Penn Diabetes Research Center Radioimmunoassay and Biomarkers Core Facility
lists: Penn Diabetes Research Center
lists: Penn Diabetes Research Center Transgenic and Chimeric Mouse Core Facility
lists: Louisiana State University Pennington Biomedical Nutrition Obesity Research Center Core Facility
lists: Pennington Biomedical Research Center Nutrition and Obesity Research Center Animal Models and Phenotyping Core
lists: Pennington Biomedical Research Center Nutrition and Obesity Research Center Human Phenotyping Core
lists: Pennington Biomedical Research Center Nutrition and Obesity Research Center Molecular Mechanisms Core
lists: Pennington Biomedical Research Center Nutrition and Obesity Research Center
lists: Pittsburgh Center for Kidney Research Biostatistical Analysis Services
lists: Pittsburgh Center for Kidney Research Cellular Physiology
lists: Pittsburgh Center for Kidney Research Kidney Imaging
lists: Pittsburgh Center for Kidney Research Model Organisms
lists: Pittsburgh Center for Kidney Research
lists: Pittsburgh Center for Kidney Research Single Nephron and Metabolomics
lists: Polycystic Kidney Disease Research and Translation Centers
lists: Texas Medical Center Digestive Diseases Center Administrative Core
lists: Texas Medical Center Digestive Diseases Center Cellular and Molecular Morphology Core
lists: Texas Medical Center Digestive Diseases Center Functional Genomics and Microbiome
lists: Texas Medical Center Digestive Diseases Center Integrative Biology Core
lists: Texas Medical Center Digestive Diseases Center
lists: Texas Medical Center Digestive Diseases Center Study Design and Clinical Research Core Services
lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester Human Imaging Core
lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester Model Systems Core
lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester Molecular Genetics and Biomarker Core
lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester
lists: UAB Hepatorenal Fibrocystic Diseases Core Center Cellular Physiology Resource
lists: UAB Hepatorenal Fibrocystic Diseases Core Center Engineered Models Resource
lists: UAB Hepatorenal Fibrocystic Diseases Core Center Hepato-Renal Fibrocystic Diseases Translational Resource
lists: UAB Hepatorenal Fibrocystic Diseases Core Center
lists: UAB Hepatorenal Fibrocystic Diseases Core Center Therapeutic Screening and Drug Development Resource
lists: UAB-UCSD Core Center for Acute Kidney Injury Research Administrative Core
lists: UAB-UCSD Core Center for Acute Kidney Injury Research Bioanalytical Core
lists: University of Alabama at Birmingham-University of California San Diego O'Brien Center for Acute Kidney Injury Research Biostatistical Core
lists: UAB-UCSD Core Center for Acute Kidney Injury Research Clinical Studies of AKI
lists: UAB-UCSD Core Center for Acute Kidney Injury Research Pre-Clinical Studies of AKI
lists: UAB-UCSD Core Center for Acute Kidney Injury Research
lists: University of Alabama at Birmingham Diabetes Research Center Administrative Core Facility
lists: University of Alabama at Birmingham Diabetes Research Center Animal Physiology Core Facility
lists: University of Alabama at Birmingham Diabetes Research Center Bioanalytical REDOX Biology Core Facility
lists: University of Alabama at Birmingham Diabetes Research Center Human Physiology Core Facility
lists: University of Alabama at Birmingham Diabetes Research Center Interventions and Translation Core
lists: University of Alabama at Birmingham Diabetes Research Center
lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Animal Models Core
lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Biostatistics Core
lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Metabolism Core
lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Physical Activity Core
lists: University of Alabama at Birmingham Nutrition and Obesity Research Center
lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Genomics and Epigenetics Core Facility
lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Human Genetics Core Facility
lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Metabolic and Molecular Physiology Core Facility
lists: University of California San Diego - University of California Los Angeles Diabetes Research Center
lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Targeted Pathway Analysis Core Facility
lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Transgenic and Knockout Mouse Core Facility
lists: University of California San Francisco Parnassus Flow Cytometry Core Facility
lists: University of California San Francisco Diabetes Research Center Lentiviral RNAi Core Facility
lists: University of California San Francisco Diabetes Research Center Microscopy Core Facility
lists: University of California San Francisco Diabetes Research Center Mouse Genetics Core Facility
lists: University of California San Francisco Diabetes Research Center Mouse Metabolism Core
lists: University of California San Francisco Diabetes Research Center
lists: University of California San Francisco Nutrition and Obesity Research Center Genetics and Genomics Core
lists: University of California San Francisco Nutrition and Obesity Research Center Human Metabolism Core
lists: University of California San Francisco Nutrition and Obesity Research Center Mouse Metabolism and Imaging Core
lists: University of California San Francisco Nutrition and Obesity Research Center
lists: University of Chicago Diabetes Research and Training Center Administrative Core
lists: University of Chicago Diabetes Research and Training Center Animal Models and Physiology Core
lists: University of Chicago Diabetes Research and Training Center Islet Cell Biology Core
lists: University of Chicago Diabetes Research and Training Center Molecular Biology and Genetics Core Laboratory
lists: University of Chicago Diabetes Research and Training Center
lists: University of Colorado Anschutz Medical Campus Nutrition and Obesity Research Center
lists: University of Iowa Center for Gene Therapy Cell Tissue Core
lists: University of Iowa Center for Gene Therapy Clinical Core
lists: University of Iowa Center for Gene Therapy Comparative Pathology Core
lists: University of Iowa Center for Gene Therapy
lists: University of Iowa Center for Gene Therapy Vectore Core
lists: University of Michigan Nutrition and Obesity Research Center Administrative Core
lists: University of Michigan Nutrition and Obesity Research Center Animal Phenotyping Core
lists: University of Michigan Nutrition and Obesity Research Center Human Phenotyping Core
lists: University of Michigan Nutrition and Obesity Research Center Integrative Biostatistics and Informatics Core
lists: University of Michigan Nutrition and Obesity Research Center Molecular Phenotyping Core
lists: University of Michigan Nutrition and Obesity Research Center
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Administrative Core
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Animal Metabolism Phenotyping Core
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Biostatistics Program
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Clinical Nutrition Research Facilitation Program
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Communication for Health Applications and Interventions Core
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Diet and Physical Activity Core
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Metabolic Molecular Phenotyping Core
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Nutrigenetics Core
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Research Facilitation Program
lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center
lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Cell Morphology Core
lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Immunology Core
lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis
lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Vector Core Facility
lists: University of Washington Diabetes Research Center Administrative Core
lists: University of Washington Diabetes Research Center Cell Function Analysis Core Facility
lists: University of Washington Diabetes Research Center Cellular and Molecular Imaging Core
lists: University of Washington Diabetes Research Center Human Studies Core Facility
lists: University of Washington Diabetes Research Center Quantitative and Functional Proteomics Core Facility
lists: University of Washington Diabetes Research Center
lists: University of Washington Diabetes Research Center Vector and Transgenic Mouse Core
lists: Vanderbilt Diabetes Research and Training Center Cell Imaging Shared Resource Core Facility
lists: Vanderbilt Diabetes Research and Training Center Hormone Assay and Analytical Services Core Facility
lists: Vanderbilt Diabetes Research and Training Center Islet Procurement and Analysis Core
lists: Vanderbilt Diabetes Research and Training Center Metabolic Physiology Shared Resource
lists: Vanderbilt Diabetes Research and Training Center
lists: Vanderbilt Diabetes Research and Training Center Transgenic Mouse and ES Cell Shared Resource
lists: Vanderbilt Diabetes Research and Training Center Vanderbilt Diet Body Composition and Metabolism Core Facility
lists: Vanderbilt Digestive Disease Research Center Bioanalytical Mass Spectrometry and Proteomics Core
lists: Vanderbilt Digestive Disease Research Center Cellular Imaging Core
lists: Vanderbilt Digestive Disease Research Center Flow Cytometry Core
lists: Vanderbilt Digestive Disease Research Center
lists: University of Washington Nutrition and Obesity Research Center Adipose Tissue and Obesity Core
lists: University of Washington Nutrition and Obesity Research Center Administrative and Enrichment Core
lists: University of Washington Nutrition and Obesity Research Center Analytic Core
lists: University of Washington Nutrition and Obesity Research Center Energy Balance Core
lists: Washington University Center for Diabetes Translation Research Administrative Core in Diabetes Research Core
lists: University of Washington Nutrition and Obesity Research Center
lists: Washington University Center for Diabetes Translation Research Dissemination and Implementation in Diabetes Research Core Facility
lists: Washington University Center for Diabetes Translation Research Health Communication and Health Literacy Core Facility
lists: Washington University Center for Diabetes Translation Research Health Informatics in Diabetes Research Core
lists: USC Liver Transplant Program and Center for Liver Disease Analytical Metabolic Instrumentation Core
lists: Washington University Center for Diabetes Translation Research Policy and Systems Science Analysis in Diabetes Research Core
lists: USC Liver Transplant Program and Center for Liver Disease Cell and Tissue Imaging Core
lists: Washington University Center for Diabetes Translation Research Research Partnerships with American Indian/Alaskan Native Communities Core
lists: Washington University Center for Diabetes Translation Research
lists: USC Liver Transplant Program and Center for Liver Disease Cell Separation and Culture Core
lists: Washington University Center for Diabetes Translation Research Solutions to Diabetes in Black Americans Core
lists: Washington University Digestive Diseases Research Core Center Administrative and Resource Access Core
lists: USC Liver Transplant Program and Center for Liver Disease Liver Histology Core
lists: USC Liver Transplant Program and Center for Liver Disease
lists: Vanderbilt Center for Diabetes Translation Research Administrative Core
lists: Vanderbilt Center for Diabetes Translation Research Behavioral Intervention Technologies and Services Core
lists: Vanderbilt Center for Diabetes Translation Research Community Engagement Core
lists: Vanderbilt Center for Diabetes Translation Research Community Outreach and Heath Disparities Core
lists: Vanderbilt Center for Diabetes Translation Research
lists: Washington University Digestive Diseases Research Core Center Advanced Imaging and Tissue Analysis Core
lists: Vanderbilt Center for Diabetes Translation Research Translation Methods Core
lists: Washington University Digestive Diseases Research Core Center Biobank Core
lists: Yale Liver Center
lists: Washington University Digestive Diseases Research Core Center Murine Models and Gnotobiotics Core
lists: Yale Liver Center Morphology Core
lists: Washington University Digestive Diseases Research Core Center
lists: Yale Liver Center Clinical and Translational Core
lists: Washington University School of Medicine Diabetes Research Center Cell and Tissue Imaging Core
lists: Yale Liver Center Cellular and Molecular Physiology Core
lists: Washington University School of Medicine Diabetes Research Center Diabetes Models Phenotyping Core Facility
lists: Yale Liver Center Administrative Core
lists: Washington University School of Medicine Diabetes Research Center Translational Diagnostics Core
lists: Yale Diabetes Research Center
lists: Washington University School of Medicine Diabetes Research Center Immunology of Type 1 Diabetes Core
lists: Yale Diabetes Research Center Physiology Core Facility
lists: Washington University School of Medicine Diabetes Research Center Mass Spectrometry Core
lists: Yale Diabetes Research Center Molecular Genetics Core
lists: Yale Diabetes Research Center Molecular Core Facility
lists: Washington University School of Medicine Diabetes Research Center Morphology and Metabolic Analysis Core
lists: Yale Diabetes Research Center Diabetes Translational Core Facility
lists: Washington University School of Medicine Diabetes Research Center
lists: Washington University School of Medicine Diabetes Research Center Transgenic and ES Cell Core
lists: Yale Diabetes Research Center Clinical Metabolism Core Facility
lists: Yale Diabetes Research Center Cell Biology Core Facility
lists: Washington University St. Louis Nutrition Obesity Research Center
lists: Yale Diabetes Research Center Administrative Core Facility
lists: Yale Cooperative Center of Excellence in Hematology Animal Modeling Core
lists: Yale Cooperative Center of Excellence in Hematology
lists: Yale Cooperative Center of Excellence in Hematology Cell Preparation and Analysis Core
lists: Yale Cooperative Center of Excellence in Hematology Imaging Core
lists: Harvard Digestive Disease Center
lists: Harvard Digestive Diseases Center Biomedical CORE B: Microscopy and Histopathology
lists: Harvard Digestive Diseases Center Biomedical CORE C: Epithelial Cell and Mucosal Immunology
lists: Harvard Digestive Diseases Center Biomedical CORE D: Gnotobiotic Mice, Microbiology and Metagenomics
lists: Harvard Digestive Diseases Center Clinical Translational Research Program
lists: Harvard Digestive Diseases Center Bio-Repository and Data Registry for Human Material
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Integrated Physiology Core
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Image Core
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Proteomics Core
lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Translational Research Enhancement Core
lists: UCSF Liver Center
lists: UCSF Liver Center Cell Biology Core
lists: UCSF Liver Center Clinical & Translational Core
lists: UCSF Liver Center Immunology Core
lists: UCSF Liver Center Pathology & Imaging Core
lists: University of Chicago Digestive Diseases Research Core Center
lists: University of Chicago Digestive Diseases Research Core Center Integrated Translational Research Core
lists: University of Chicago Digestive Diseases Research Core Center Administrative Core
lists: University of Chicago Digestive Diseases Research Core Center Tissue Engineering and Cell Models Core
lists: University of Chicago Digestive Diseases Research Core Center Host-Microbe Core
lists: University of Chicago Digestive Diseases Research Core Center Tissue and Cell Imaging Core
lists: University of Michigan Center for Gastrointestinal Research
lists: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core
lists: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core
lists: University of Michigan Center for Gastrointestinal Research Molecular Biology Core
lists: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Advanced Analytics Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Biostatistics and Data Management Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Gnotobiotic Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Histology Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Large Animal Models Core
lists: University of North Carolina Center for Gastrointestinal Biology and Disease Microbiome Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Molecular Pathology and Imaging Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Host-Microbial Analytic and Repository Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Genetically-Modified Mouse Core
lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Cell Culture Core
lists: Joslin Diabetes Center Molecular Phenotyping and Genotyping Core
lists: University of Pennsylvania Diabetes Research Center
lists: Preventing Early Renal Loss in Diabetes (PERL)
lists: Clinical Trials in Organ Transplantation in Children (CTOT-C)
lists: Clinical Trials in Organ Transplantation (CTOT)
lists: Stanford Diabetes Research Center
lists: Monogenic Diabetes Registry
lists: Chronic Prostatitis Collaborative Research Network Clinical Trial- Alfuzosin
lists: National Glycohemoglobin Standardization Program
lists: MetaCyto
lists: JOINSOLVER
lists: HASP
lists: NetCirChro
lists: Simmune
lists: ABC Bacterial Transporter Systems Database
lists: Kidney Precision Medicine Project
lists: ValIdated Systematic IntegratiON of epigenomic data
lists: The Human BioMolecular Atlas Program
lists: Prevention of Lower Urinary Tract Symptoms
lists: Illuminating the Druggable Genome
lists: 4D Nucleome
lists: immuneXpresso
lists: Multi-Disciplinary Approach to the Study of Chronic Pelvic Pain
lists: Secrepedia
lists: MoTrPAC Data Hub
lists: Human Cell Atlas
lists: PANC-DB
lists: Rare and Atypical Diabetes Network
lists: Diabetes Control and Complications Trial
lists: Diabetes Data and Hypothesis Hub
lists: Common Metabolic Diseases Knowledge Portal
lists: Type 1 Diabetes Knowledge Portal
lists: Sleep Disorder Knowledge Portal
lists: Cardiovascular Disease Knowledge Portal
lists: Cerebrovascular Disease Knowledge Portal
lists: Trans-Omics for Precision Medicine (TOPMed) Program
lists: All of Us
lists: AI-READI
is listed by: NIH Data Sharing Repositories
is listed by: NIDDK Research Resources
is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology
is related to: MTOPS Prostate Samples Analysis Consortium
is related to: Neuroscience Information Framework
is related to: Diabetes Disease Portal
is related to: Kidney and Urinary Pathway Knowledge Base
is related to: dbMHC
is related to: Islet Cell Resource Centers
is related to: DGAP
is related to: Nuclear Receptor Resource
is related to: dkCOIN
is related to: Human Biological Data Interchange
is related to: National Gene Vector Biorepository
is related to: Creatinine Standardization Program
is related to: Glomerular Filtration Rate Calculators
is related to: Congressionally Directed Medical Research Program
is related to: National Kidney Disease Education Program
is related to: Network of Minority Health Research Investigators
is related to: National Endocrine and Metabolic Diseases Information Service
is related to: Kidney and Urinary Pathway Ontology
is related to: National Diabetes Information Clearinghouse
is related to: Digestive Diseases Statistics for the United States
is related to: Diabetes in America
is related to: National Digestive Diseases Information Clearinghouse
is related to: Diabetes Control and Complications Trial
is related to: National Hematologic Diseases Information Service
is related to: National Kidney and Urologic Diseases Information Clearinghouse
is related to: Nonhuman Primate Transplantation Tolerance Cooperative Study Group
is related to: Type 1 Diabetes Preclinical Testing Program
is related to: Diabetes Autoantibody Standardization Program
is related to: AASK Clinical Trial and Cohort Study
is related to: Maryland Genetics of Interstitial Cystitis
is related to: Frequent Hemodialysis Network Nocturnal Trial
is related to: Mammalian Gene Collection
is related to: Zebrafish Gene Collection
is related to: Boston Area Community Health Survey
is related to: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia
is related to: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study
is related to: Complementary and Alternative Medicine for Urological Symptoms
is related to: Mouse Mutagenesis Center for Developmental Defects
is related to: CARDS Database
is related to: ACCORD
is related to: Program to Reduce Incontinence by Diet and Exercise
is related to: Renal Disease Portal
is related to: Renin Angiotensin System Study
is related to: NIH Data Sharing Repositories
is related to: Kidney Development Database
is related to: GenePaint Interactive Anatomy Atlas
is related to: EMAGE Gene Expression Database
is related to: Gene Expression Omnibus
is related to: MGnify
is related to: FAIR Data Informatics Laboratory
is related to: Type 1 Diabetes Knowledge Portal
is related to: Polycystic Kidney Disease Research Resource Consortium
has parent organization: SciCrunch
has parent organization: University of California at San Diego; California; USA
|
Digestive disease, Kidney disease, Diabetes, Metabolic disease, Endocrine disease, Obesity, Urologic disease, Type 1 diabetes, Type 2 diabetes |
NIDDK U24 DK097771 |
PMID:26393351 |
Free, Freely available |
|
nlx_153866, r3d100012845 |
http://scicrunch.org/dknet, https://doi.org/10.17616/R31NJMEL |
|
|
SCR_001606 |
National Institute of Diabetes and Digestive and Kidney Disease Information Network, NIDDK Information Network, DKnet, NIDDKInformation Network |
2026-08-01 12:01:32 |
21 |
Debian
Resource Report
Resource Website
50+ mentions
|
Debian (RRID:SCR_006638)
|
Debian
|
data or information resource, database, source code, software resource, software repository
|
Debian is Linux distribution composed of free and open source software, developed by community supported Debian Project, which was established by Ian Murdock on August 16, 1993.Debian comes with over 59000 packages (precompiled software that is bundled up in nice format for easy installation on your machine), package manager (APT), and other utilities that make it possible to manage thousands of packages on thousands of computers as easily as installing single application.
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operating system, software package, FASEB list
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lists: GUARDD
lists: FACS
lists: SNAVI
lists: Fusion Analyser
lists: GEOquery
lists: MIMOSA
lists: RNAcontext
lists: AffyRNADegradation
lists: Patchwork
lists: GraBCas
lists: GENIE3
lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks
lists: Megraft
lists: PeptideProphet
lists: VARiD
lists: Flicker
lists: ARACHNE
lists: Quant
lists: riboPicker
lists: cn.FARMS
lists: ProteinProphet
lists: dbSTS
lists: flowPeaks
lists: SODOCK
lists: PEPPER
lists: POPBAM
lists: Micro-Analyzer
lists: MuTect
lists: Mfuzz
lists: PGS
lists: TAPyR
lists: ContEst
lists: FPSAC
lists: FlipFlop
lists: SRMA
lists: Pindel
lists: PhenoFam
lists: DSRC
lists: SOAP
lists: TriageTools
lists: StringTie
lists: SplitSeek
lists: BLASR
lists: Bowtie
lists: Barrnap
lists: MUSCLE
lists: GimmeMotifs
lists: massiR
lists: CUDA-EC
lists: Illuminator
lists: SplicePlot
lists: SLOPE
lists: PARalyzer
lists: VAAL
lists: BreakSeq
lists: ProGlycProt
lists: OmicsOffice for NGS SeqSolve
lists: TileQC
lists: NGSUtils
lists: QUAST
lists: GenomicTools
lists: piCALL
lists: SNPchip
lists: TALLYMER
lists: SABER
lists: wateRmelon
lists: QualiMap
lists: BFCounter
lists: ADMIXTURE
lists: OLIN
lists: DEXUS
lists: limmaGUI
lists: KAnalyze
lists: oneChannelGUI
lists: BeadDataPackR
lists: affylmGUI
lists: SAMBLASTER
lists: PyLOH
lists: fRMA
lists: CYCLE
lists: FARMS
lists: MACAT
lists: GlyProt
lists: YinOYang
lists: Sequedex
lists: DictyOGlyc
lists: ToppCluster
lists: Biocatalogue - The Life Science Web Services Registry
lists: ProbRNA
lists: HAPLOPAINTER
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: GERMLINE
lists: FACTA+.
lists: CisGenome
lists: asSeq
lists: unifiedWMWqPCR
lists: HOMOZYGOSITYMAPPER
lists: Prediction of Amyloid Structure Aggregation
lists: InterMine
lists: TANGO
lists: CQN
lists: MEME Suite - Motif-based sequence analysis tools
lists: pRESTO
lists: S-MART
lists: PhosphoSitePlus: Protein Modification Site
lists: myExperiment
lists: DINDEL
lists: Skylign
lists: PEDIGRAPH
lists: ADaCGH2
lists: CCAT
lists: AnimalTFDB
lists: TEMP
lists: CanSNPer
lists: Candida Genome Database
lists: SamSPECTRAL
lists: InteroPorc
lists: MetaBase
lists: Pecan
lists: cisRED: cis-regulatory element
lists: AffyPipe
lists: SHORTY
lists: BISC
lists: Pathway Commons
lists: Cake
lists: SNVer
lists: WebGeSTer DB
lists: FlyFactorSurvey
lists: ASPGD
lists: TcoF
lists: cpnDB: A Chaperonin Database
lists: ZOOM
lists: CAMERA - Collection of annotation related methods for mass spectrometry data
lists: BEETL-fastq
lists: NGSrich
lists: ShotGun
lists: Iterative Signature Algorithm
lists: SBARS
lists: SNPAAMapper
lists: Autophagy Database
lists: RUbioSeq
lists: COSMIC - Catalogue Of Somatic Mutations In Cancer
lists: EchoBASE
lists: QualitySNPng
lists: Pathview
lists: pymzML
lists: RopeBWT2
lists: ExomeDepth
lists: NetPathMiner
lists: leeHom
lists: PurBayes
lists: libCSAM
lists: SuperPred: Drug classification and target prediction
lists: HGNC
lists: Coding Potential Calculator
lists: T3DB
lists: CPTRA
lists: BioNumbers
lists: GATE
lists: ProRata
lists: GreenPhylDB
lists: BREAKDANCER
lists: GeneFisher
lists: tweeDEseq
lists: HYDEN
lists: Eukaryotic Linear Motif
lists: Primer3Plus
lists: MethylAid
lists: Triplex
lists: Distant Regulatory Elements
lists: hot scan
lists: MFEprimer
lists: Proteome Analyst Specialized Subcellular Localization Server
lists: mrsFAST
lists: BioJS
lists: FastSNP
lists: Gene Set Enrichment Analysis
lists: Pipeliner
lists: ms lims
lists: GenePattern
lists: rBiopaxParser
lists: QDNAseq
lists: MutDB
lists: Piano
lists: NovelSeq
lists: MAGE-TAB
lists: Database of Interacting Proteins (DIP)
lists: Weighted Gene Co-expression Network Analysis
lists: Blood Group Antigen Gene Mutation Database
lists: drFAST
lists: pairheatmap
lists: MiST - Microbial Signal Transduction database
lists: AltAnalyze - Alternative Splicing Analysis Tool
lists: SplicingCompass
lists: deFuse
lists: Assembly Based ReAligner
lists: ggbio
lists: miR-PREFeR
lists: ALDEx2
lists: HTqPCR
lists: NanoStringNorm
lists: T-profiler
lists: Snakemake
lists: jmzTab
lists: MIPgen
lists: Bpipe
lists: PoPoolation
lists: L-Measure
lists: MultiPhen
lists: PheWAS R Package
lists: InsertionMapper
lists: Quantitative Enrichment of Sequence Tags
lists: INMEX
lists: Segway - a way to segment the genome
lists: SeWeR - SEquence analysis using WEb Resources
lists: TagDust
lists: BSRD
lists: DER Finder
lists: Stem Cell Discovery Engine
lists: Kdetrees
lists: Tree and reticulogram REConstruction
lists: BioPig
lists: NCBI BioSystems Database
lists: Distributed String Mining Framework
lists: NEWT
lists: PILGRM
lists: Selectome: a Database of Positive Selection
lists: SVMerge
lists: Parseq
lists: SVseq
lists: Small Molecule Pathway Database
lists: miRNAKey
lists: DELLY
lists: Apo and Holo structures DataBase
lists: BioSample Database at EBI
lists: MetaPhyler
lists: MG-RAST
lists: SLIQ
lists: SOPRA
lists: Information Hyperlinked Over Proteins
lists: AmphoraNet
lists: SINA
lists: SSPACE
lists: Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets
lists: STING Report
lists: G-BLASTN
lists: RNA-eXpress
lists: MethPipe
lists: SoyBase
lists: Strelka2
lists: RUM
lists: SPOT - Biological prioritization after a SNP association study
lists: VFS
lists: PHAge Search Tool
lists: MLTreeMap
lists: SEECER
lists: GeneTalk
lists: ERANGE
lists: rQuant
lists: NCBO Annotator
lists: ShoRAH
lists: Yabi
lists: ORMAN
lists: FusionMap
lists: CoPub
lists: Scripture
lists: SolexaQA
lists: Kismeth
lists: EMAGE Gene Expression Database
lists: SAMStat
lists: Knime4Bio
lists: Bis-SNP
lists: GobyWeb
lists: Jellyfish
lists: PRINSEQ
lists: PASS
lists: GSNAP
lists: SOAPaligner/soap2
lists: MethylViewer
lists: READSCAN
lists: DistMap
lists: MicrobesOnline
lists: mrFAST
lists: FLASH
lists: TIGRFAMS
lists: TMA Navigator
lists: Bambino
lists: TreQ
lists: SeqMap
lists: SeqTrace
lists: TRANSFAC
lists: GoFish
lists: MethylomeDB
lists: CLIPZ
lists: SerbGO
lists: ToppGene Suite
lists: ngsTools
lists: PePr
lists: DMRforPairs
lists: CharProtDB: Characterized Protein Database
lists: Expression Profiler
lists: SNPsandGO
lists: GoSurfer
lists: WEGO - Web Gene Ontology Annotation Plot
lists: SOURCE
lists: Stampy
lists: DiseaseMeth
lists: BLESS
lists: GraphProt
lists: GoPubMed
lists: ccPDB - Compilation and Creation of datasets from PDB
lists: Europe PubMed Central
lists: Dr.VIS - Human Disease-Related Viral Integration Sites
lists: DOMMINO - Database Of MacroMolecular INteractiOns
lists: DBETH - Database for Bacterial ExoToxins for Humans
lists: VirHostNet: Virus-Host Network
lists: GWASdb
lists: HFV Database
lists: HotRegion - A Database of Cooperative Hotspots
lists: eQuilibrator
lists: FunTree
lists: Cascade
lists: 959 Nematode Genomes
lists: ICEberg
lists: IndelFR - Indel Flanking Region Database
lists: IDEAL - Intrinsically Disordered proteins with Extensive Annotations and Literature
lists: ProRepeat
lists: NRG-CING
lists: InterEvol database
lists: MMMDB - Mouse Multiple tissue Metabolome DataBase
lists: Newtomics
lists: MIPModDB
lists: DistiLD - Diseases and Traits in LD
lists: Polbase
lists: UMD-BRCA1/ BRCA2 databases
lists: ScerTF
lists: VIRsiRNAdb
lists: ProPortal
lists: OGEE - Online GEne Essentiality database
lists: RecountDB
lists: PRED-GPCR
lists: RNA CoSSMos
lists: PRED-SIGNAL
lists: SNPedia
lists: SpliceDisease
lists: HMM-TM
lists: deepSNV
lists: OMPdb
lists: PRED-LIPO
lists: VICUNA
lists: Predictive Networks
lists: COEUS
lists: GeneTrail
lists: epigenomix
lists: ADGO
lists: SRAdb
lists: QCGWAS
lists: Flycircuit
lists: MouseBook
lists: Immune Epitope Database and Analysis Resource (IEDB)
lists: SitEx
lists: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
lists: MSIsensor
lists: TSSer
lists: ATRHUNTER
lists: Phytozome
lists: Decombinator
lists: ViralZone
lists: COLT-Cancer
lists: Gene Expression Database
lists: BEDTools
lists: waviCGH
lists: Pseudomonas Genome Database
lists: BIGpre
lists: MyHits
lists: CAPS Database
lists: SpliceTrap
lists: EagleView
lists: IMGT/LIGM-DB
lists: RIKEN integrated database of mammals
lists: COHCAP
lists: DARC - Database for Aligned Ribosomal Complexes
lists: canSAR
lists: GWAMA
lists: AutismKB
lists: zfishbook
lists: PomBase
lists: Myrna
lists: PLEXdb - Plant Expression Database
lists: RamiGO
lists: PhenoM - Phenomics of yeast Mutants
lists: IMGT/GENE-DB
lists: HIstome: The Histone Infobase
lists: SCOP: Structural Classification of Proteins
lists: CuticleDB
lists: agriGO
lists: Expression Database in 4D
lists: ESEfinder 3.0
lists: TriTrypDB
lists: VIDA
lists: Database of Arabidopsis Transcription Factors
lists: Atlas of Genetics and Cytogenetics in Oncology and Haematology
lists: AgBase
lists: Hyper Cell Line Database
lists: Midbody, Centrosome and Kinetochore
lists: Chromosome 7 Annotation Project
lists: MfunGD - MIPS Mouse Functional Genome Database
lists: Taipan
lists: VISTA Browser
lists: T1DBase
lists: lobSTR
lists: VISTA Enhancer Browser
lists: MEROPS
lists: Gene Array Analyzer
lists: Network Analysis, Visualization and Graphing TORonto
lists: Candidate Genes to Inherited Diseases
lists: Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD)
lists: eTBlast
lists: hiPathDB - human integrated Pathway DB with facile visualization
lists: MuSiC
lists: miRNEST
lists: QuasiRecomb
lists: neXtProt
lists: DNAtraffic
lists: BeeBase
lists: NetOGlyc
lists: GenoTan
lists: GMAP
lists: LegumeIP
lists: SeqBuster
lists: elastix
lists: iMir
lists: WEBLOGO
lists: MaCH-Admix
lists: Pathema
lists: SNPinfo Web Server
lists: MOSCPHASER
lists: NEBcutter
lists: Atlas2
lists: FGDP
lists: Velvet
lists: HomSI
lists: MicroSNiPer
lists: MIRA
lists: ALLPATHS-LG
lists: CUPSAT
lists: SVDetect
lists: omiRas
lists: CopySeq
lists: MutSig
lists: HapFABIA
lists: DIANA-LncBase
lists: MutationTaster
lists: HMCan
lists: Geneious
lists: kmer-SVM
lists: SICER
lists: ZINBA
lists: Pedimap
lists: MAnorm
lists: PlantTFcat
lists: MethMarker
lists: NPS
lists: PeakRanger
lists: SEAL
lists: OligoArray
lists: PSAR-Align
lists: CEQer
lists: CloudBurst
lists: nucleR
lists: RACE
lists: Asterias
lists: PatMaN
lists: RobiNA
lists: LitInspector
lists: Btrim
lists: ArrayAnalysis.org
lists: CANGS
lists: GeneStitch
lists: ProDesign
lists: JiffyNet
lists: AlienTrimmer
lists: GenoREAD
lists: HSLPred
lists: CancerResource
lists: FABIA
lists: PlnTFDB
lists: easyRNASeq
lists: OBI-Warp
lists: PREDDIMER
lists: ECHO
lists: ICPL ESIQuant
lists: PRIDE Converter 2
lists: SlideSort-BPR
lists: COBRApy
lists: MFPaQ
lists: TopHat-Fusion
lists: miRPlant
lists: SNP ratio test
lists: compomics-utilities
lists: PLEK
lists: multiplierz
lists: Allim
lists: ISDTool
lists: NetCoffee
lists: MToolBox
lists: Scalpel
lists: DNaseR
lists: LocalAli
lists: NAIL
lists: iceLogo
lists: GPU-Meta-Storms
lists: AMS
lists: rqubic
lists: ANNOVAR
lists: A5-miseq
lists: PhosphoSiteAnalyzer
lists: Cell motility
lists: MethylCoder
lists: CAZy- Carbohydrate Active Enzyme
lists: CPFP
lists: GENE-counter
lists: PoolHap
lists: LOCAS
lists: CloudAligner
lists: HeurAA
lists: Mouse Genome Database
lists: MitoBreak
lists: PolyPhen: Polymorphism Phenotyping
lists: GSA-SNP
lists: featureCounts
lists: Crossbow
lists: CSAR
lists: seqMINER
lists: BEADS
lists: IUPHAR/BPS Guide to Pharmacology
lists: QuantiSNP
lists: Cube-DB
lists: Death Domain database
lists: psRNATarget
lists: DSAP
lists: PlantNATsDB - Plant Natural Antisense Transcripts DataBase
lists: GeneSigDB
lists: MACS
lists: NGSmethDB
lists: GENSCAN
lists: INCLUSive
lists: MINAS - Metal Ions in Nucleic AcidS
lists: Composition Profiler
lists: NNcon
lists: EGSEA
lists: SCRATCH
lists: Telescoper
lists: Buccaneer
lists: ProtTest
lists: Morpheus
lists: KAVIAR
lists: DISEASES
lists: SPEX2
lists: RAST Server
lists: GeneWise
lists: Crystallography and NMR System (CNS)
lists: FATCAT
lists: Membrane Protein Explorer
lists: LTR_Finder
lists: PALEOMIX
lists: TISSUES
lists: MetaMapR
lists: primers4clades
lists: MS-GF+
lists: PLAN2L
lists: Off-Spotter
lists: ProteomicsDB
lists: CHiCAGO
lists: SC3
lists: Bio-tradis
lists: ApiDB CryptoDB
lists: HISAT2
lists: PhyD3
lists: LoRDEC
lists: Bamtools
lists: ALTER
lists: MultiQC
lists: TFBS
lists: EnrichmentMap
lists: Poretools
lists: Exonerate
lists: 3D-footprint
lists: Genesis
lists: oligo
lists: DISULFIND
lists: Fastml
lists: mentha
lists: Oufti
lists: eXpression2Kinases
lists: IDEPI - IDentify EPItopes
lists: SMAGEXP
lists: ProCon - PROteomics CONversion
lists: TRANSIT
lists: DINIES
lists: Splicing Express
lists: FluxModeCalculator
lists: Lifebit Deploit
lists: ngsRelate
lists: SARTools
lists: OmicsNet
lists: SPICE
lists: Microscopy Image Browser
lists: Thunder STORM
lists: clusterProfiler
lists: NetworkAnalyst
lists: ANOCVA
lists: Rsubread
lists: Subread
lists: ConsensusClusterPlus
lists: CIBERSORT
lists: FRETBursts
lists: CCTOP
lists: scran
lists: ScaffMatch
lists: Heatmapper
lists: Goseq
lists: PRSice
lists: UMI-tools
lists: Proovread
lists: BinPacker
lists: JAMM
lists: CentroidFold
lists: ComplexHeatmap
lists: PatchDock
lists: FastProject
lists: ExPASy ABCD database
lists: Gigwa
lists: shinyGEO
lists: GeSeq
lists: EMBOSSMatcher
lists: Geneshot
lists: Mousebytes
lists: trimAl
lists: AmoebaDB
lists: STRUCTURE
lists: PASTEClassifier
lists: NetPhos
lists: HiC-Pro
lists: SWISS-MODEL
lists: Blood Exposome Database
lists: HingeProt
lists: ChiCMaxima
lists: ProtParam Tool
lists: GalaxyRefine
lists: FlowCal
lists: SpydrPick
lists: R/qtl2
lists: Roary
lists: SIGNOR
lists: Protein Interactions Calculator
lists: REDIportal
lists: MaxAlign
lists: Minimap2
lists: PrognoScan
lists: GPS-SUMO
lists: Signaling Pathways Project
lists: ProSA-web
lists: GalaxyWEB
lists: iTOL
lists: EpiModel
lists: rVista
lists: AlgPred
lists: D-GENIES
lists: Robetta
lists: GOnet
lists: E-CRISP
lists: STAMP
lists: Batch Web CD-Search Tool
lists: aroma.light
lists: Annotree
lists: Database of Secondary Structure Assignments
lists: Clustal Omega
lists: DESeq
lists: discoSnp
lists: vcflib
lists: Genome BioInformatics Research Lab - gff2ps
lists: Primer3
lists: BioPerl
lists: Rainbow
lists: RNAhybrid
lists: Clustal W2
lists: Apollo
lists: IgBLAST
lists: Ray
lists: khmer
lists: Stacks
lists: Predictions for Entire Proteomes
lists: DIALIGN
lists: EBSeq
lists: Minia
lists: SAMtools/BCFtools
lists: Artemis: Genome Browser and Annotation Tool
lists: NCBI BLAST
lists: biobambam
lists: VICMpred
lists: Staden Package
lists: Bowtie 2
lists: RAxML
lists: WHAM
lists: VarScan
lists: Bismark
lists: ea-utils
lists: HTSeq
lists: Vienna RNA
lists: Regulatory Sequence Analysis Tools
lists: BitSeq
lists: COILS: Prediction of Coiled Coil Regions in Proteins
lists: HilbertVis
lists: BRIG
lists: Unipro UGENE
lists: GBrowse
lists: Sickle
lists: AmpliconNoise
lists: FreeBayes
lists: tRNAscan-SE
lists: CD-HIT
lists: SSAKE
lists: MACH
lists: Segemehl
lists: BEAST
lists: Pscan-ChIP
lists: cutadapt
lists: Oases
lists: CGView
lists: SOAPsnp
lists: T-Coffee
lists: Kalign
lists: Circos
lists: Trinity
lists: Flexbar
lists: SIFT
lists: ProbCons
lists: OpenMS
lists: RSEM
lists: Glimmer
lists: GROMACS
lists: CummeRbund
lists: edgeR
lists: DNAcopy
lists: TopHat
lists: SortMeRNA
lists: LIMMA
lists: AMOS
lists: Cufflinks
lists: Nanopolish
lists: GMA
lists: Prokka
lists: phyloseq
lists: SeqPrep
lists: precrec
lists: Atac
lists: PAML
lists: KisSplice
lists: StoatyDive
lists: IMGT-ONTOLOGY
lists: KAT
lists: SeaView
lists: FastTree
lists: Crux tandem mass spectrometry analysis software
lists: rCASC
lists: minet
lists: becas
lists: tximport
lists: globaltest
lists: CheckM
lists: BLINK
lists: mosdepth
lists: bwtool
lists: dcmqi
lists: Pilon
lists: ASHLAR
lists: metagen
lists: COPASI
lists: BUSCO
lists: bridge
lists: TGS-GapCloser
lists: NiftyPET
lists: Blobtools
lists: THESIAS
lists: Fcirc
lists: chimerascan
lists: GLUE
lists: SwiftOrtho
lists: HaploReg
lists: ScanITD
lists: andi
lists: metahdep
lists: ImaGene
lists: Jalview
lists: MeroX
lists: qrqc
lists: BioNix
lists: MiXCR
lists: casper
lists: libmgf
lists: sleuth
lists: imDEV
lists: miRDB
lists: yaqcaffy
lists: NiftyFit
lists: mlgt
lists: SMARTdenovo
lists: HH-suite
lists: StatAlign
lists: affy
lists: shovill
lists: Fiji
lists: Racon
lists: rbsurv
lists: quantsmooth
lists: tensorflow
lists: seqbias
lists: ngs.plot
lists: bsseq
lists: MGnify
lists: dyebias
lists: h5vc
lists: ascat
lists: Cuffdiff
lists: mitopred
lists: OrthoFinder
lists: PIRATE
lists: Bridger
lists: Eoulsan
lists: VEnCode
lists: eTRIKS
lists: fracridge
lists: lumi
lists: genomation
lists: Hippocampome.org
lists: SymPy
lists: icy
lists: GADMA
lists: HaTSPiL
lists: XL-mHG
lists: ropls
lists: scanpy
lists: MethBase
lists: sabre
lists: plgem
lists: MyGene.info
lists: CRISPRcasIdentifier
lists: biobakery
lists: VETA
lists: EpiEstim
lists: HyPhy
lists: ODAM
lists: BISE
lists: docker4seq
lists: qcmetrics
lists: Pavian
lists: genehunter-imprinting
lists: smashpp
lists: NanoSim
lists: SimVascular
lists: BSA4Yeast
lists: minfi
lists: TDimpute
lists: RepeatScout
lists: neuroelectro
lists: MRIcron
lists: RepeatFiller
lists: ShinyLearner
lists: CRISPR-ERA
lists: CRISPR-P
lists: Warp
lists: GEMINI
lists: MAFFT
lists: TransDecoder
lists: Phenoscape
lists: PhenoMeNal
lists: les
lists: Laniakea
lists: CandiMeth
lists: eisa
lists: ProP Server
lists: ggtree
lists: scVelo
lists: PathwayMatcher
lists: charm
lists: Telescope
lists: skewer
lists: multtest
lists: Human Neocortical Neurosolver
lists: beadarray
lists: BioBERT
lists: PlotTwist
lists: GraphClust2
lists: METAREP
lists: QIIME
lists: halSynteny
lists: scater
lists: Galaxy scater
lists: larvalign
lists: iontree
lists: VAPPER
lists: GENCODE
lists: Datanator
lists: Bio2BEL
lists: UALCAN
lists: ffpe
lists: MCScan
lists: VisR
lists: Metascape
lists: GemSIM
lists: EvidenceFinder
lists: pepwheel
lists: RDXplorer
lists: bcbio-nextgen
lists: OpenWorm
lists: ActiveDriver
lists: QuickNII
lists: timecourse
lists: Bionitio
lists: ggplot2
lists: TCW
lists: SPM
lists: pvac
lists: GeneMarkS-T
lists: ascend
lists: RatMine
lists: CRISPRdirect
lists: phantompeakqualtools
lists: prank
lists: refgenie
lists: NanoPipe
lists: vsn
lists: PAFScaff
lists: odMLtables
lists: biospytial
lists: NeuroChaT
lists: clustergrammer
lists: glycomedb
lists: CLIP-Explorer
lists: pheatmap
lists: EnteroBase
lists: GigaSOM.jl
lists: bio.tools
lists: SPP
lists: lapmix
lists: EHRtemporalVariability
lists: HmtVar
lists: SnpHub
lists: Online Peri-Event Time Histogram for Open Ephys
lists: NMRProcFlow
lists: QGIS
lists: Flye
lists: kallisto
lists: clipcrop
lists: cn.mops
lists: UniCarbKB
lists: pickgene
lists: PsyGeNET
lists: seq-annot
lists: PASA
lists: ReadqPCR
lists: breseq
lists: e-Driver
lists: sim4cc
lists: PhylomeDB
lists: fastqz
lists: PerM
lists: rnaQUAST
lists: NCBI BioProject
lists: PEMer
lists: metabnorm
lists: FusionCatcher
lists: STAR
lists: VCFtools
lists: UniCarb-DB
lists: NormqPCR
lists: SnpEff
lists: DecGPU
lists: gprege
lists: VirusMINT
lists: nondetects
lists: circlize
lists: SAMTOOLS
lists: Neuroscience Information Framework
lists: Dali Server
lists: IRanges
lists: dbEST
lists: Genomic Ranges
lists: eProbalign
lists: Cistrome
lists: DIANA-mirPath
lists: BpForms
lists: GenomicFeatures
lists: SOAPdenovo
lists: BcForms
lists: 4See
lists: ABNER
lists: A Classification of Mobile genetic Elements
lists: Addgene
lists: BadMedicine
lists: ADMIXMAP
lists: ADMIXTOOLS
lists: ALCHEMY
lists: AETIONOMY
lists: ABS: A Database of Annotated Regulatory Binding Sites From Orthologous Promoters
lists: ALBERT
lists: ALOHOMORA
lists: Alternate splicing gallery
lists: Allele Frequencies in Worldwide Populations
lists: AmpliconTagger
lists: Molecular Dynamics Workflow (BioKepler)
lists: ape
lists: Alta-Cyclic
lists: Assisted Model Building with Energy Refinement (AMBER)
lists: Aroma.affymetrix
lists: ANDES
lists: ASSOCIATIONVIEWER
lists: ArrayMiner
lists: ASPEX
lists: The Alternatve Splicing Database
lists: AutoAssemblyD
lists: AutoDock Vina
lists: BAIT
lists: BamView
lists: Avogadro
lists: ArrayPipe
lists: Athena
lists: BLAT
lists: BARS
lists: BayesEpiModels
lists: BatMeth
lists: BeetleBase
lists: BBSeq
lists: naiveBayesCall
lists: BarraCUDA
lists: BCBtoolkit
lists: BioConda
lists: BAR
lists: BiG-SLiCE
lists: SVM based method for predicting beta hairpin structures in proteins
lists: betaVAEImputation
lists: BiNGO: A Biological Networks Gene Ontology tool
lists: Bioinformatics Toolkit
lists: BioCarta Pathways
lists: Biopieces
lists: Bio++
lists: BioPlex
lists: BioSimulations
lists: BRAIN
lists: BOMP: beta-barrel Outer Membrane protein Predictor
lists: biomaRt
lists: bioSyntax
lists: Bionimbus
lists: BioSimulators
lists: bioRxiv
lists: Breakpointer
lists: CiLiQuant
lists: BSVF
lists: BS Seeker
lists: Bs-Seeker2
lists: BWA
lists: CARD
lists: Canu
lists: Cell Image Library (CIL)
lists: BRB-ArrayTools
lists: CATALYST
lists: CATH: Protein Structure Classification
lists: CAT
lists: CEM
lists: CASPAR
lists: CHEBI
lists: ChimeraSlayer
lists: CATdb: a Complete Arabidopsis Transcriptome database
lists: ChemSpider
lists: Chipster
lists: CCREL
lists: cisTEM
lists: circlncRNAnet
lists: Centrifuge Classifier
lists: Cancer Genome Anatomy Project
lists: ChIPMunk
lists: Chromas
lists: CiteFuse
lists: CRCView
lists: ChiRA
lists: ClinVar
lists: ClinTrajAn
lists: clustLasso
lists: CleanEx
lists: Clinotator
lists: CNVer
lists: ComiR
lists: CODEHOP
lists: ClustVis
lists: Comparative Metatranscriptomics Workflow
lists: CMap
lists: CorMut
lists: CNV-seq
lists: Coot
lists: CITE-seq-Count
lists: CoCo
lists: CopyDetective
lists: Chromosome Scale Assembler
lists: cortex
lists: ConDeTri
lists: CRISPy-web
lists: CONTRA
lists: CovalentDock Cloud
lists: CUDASW++
lists: COGEME Phytopathogenic Fungi and Oomycete EST Database
lists: DANPOS2
lists: DOGMA
lists: CorrDrugTumorMSI
lists: DAMBE
lists: D-EE
lists: CoryneRegNet
lists: ΔG prediction server
lists: DIAMOND
lists: CYANA
lists: Datasets2Tools
lists: DEXSeq
lists: DichroWeb
lists: NCBI database of Genotypes and Phenotypes (dbGap)
lists: DBTSS: Database of Transcriptional Start Sites
lists: dbSNP
lists: DiffBind
lists: DETONATE
lists: DiProGB
lists: Descriptions of Plant Viruses
lists: DIME
lists: DicomTypeTranslator
lists: CSDeconv
lists: Dictyostelium discoideum genome database
lists: DSK
lists: DGIdb
lists: DisProt - Database of Protein Disorder
lists: DOMINE: Database of Protein Interactions
lists: eDMR
lists: ECLIPSE
lists: Experimental Design Assistant
lists: Dissect
lists: Evolutionary Couplings Server
lists: Enrichr
lists: ensembldb
lists: European Genome phenome Archive
lists: EBCall
lists: Ensembl Genomes
lists: EMAN
lists: ENIGMA
lists: DISENTANGLER
lists: Entrez Gene
lists: Ensembl
lists: eQtlBma
lists: EpiGRAPH
lists: EpiDISH R package
lists: Examl
lists: epitopepredict
lists: DrivAER
lists: Variant Effect Predictor
lists: Epigenomics Workflow on Galaxy and Jupyter
lists: Eukaryote Genes
lists: Evex
lists: FateID
lists: EXOMEPICKS
lists: European Variation Archive (EVA)
lists: FANTOM DB
lists: Genome Annotation Generator
lists: FireDB
lists: FGENESH
lists: FluoRender
lists: FLOSS
lists: fineSTRUCTURE
lists: FastQC
lists: FINDbase Worldwide
lists: ExpressYourself
lists: fgsea
lists: FuncAssociate: The Gene Set Functionator
lists: NHLBI Exome Sequencing Project (ESP)
lists: FlyBase
lists: FlexProt: flexible protein alignment
lists: GASV
lists: Fugu Genome Project
lists: Full-Length cDNA Database
lists: FragGeneScan
lists: FunRich: Functional Enrichment analysis tool
lists: FlowSOM
lists: GASSST
lists: GeMoMa
lists: An Integrated Multiple Structure Visualization and Multiple Sequence Alignment Application
lists: GEDIT
lists: VBASE2
lists: Genome Database for Rosaceae
lists: GenePattern Notebook
lists: G-Mo.R-Se
lists: FusionHunter
lists: Genome Projector
lists: GeneCodis
lists: GEN3VA
lists: GENERECON
lists: GEMB
lists: GeCo3
lists: Gene3D
lists: Genomic Annotation in Livestock for positional candidate LOci
lists: Gene Expression Atlas
lists: GeneProf
lists: Genome Trax
lists: Genome Reviews
lists: GATK
lists: FunCluster
lists: GFINDer: Genome Function INtegrated Discoverer
lists: GermOnline
lists: GeneSeeker
lists: Gmove
lists: Genometa
lists: GensearchNGS
lists: HARSH
lists: Gibbs Motif Sampler
lists: Generic GO Term Mapper
lists: Genomedata
lists: GMcloser
lists: GEO2R
lists: Gramene
lists: Genome Aggregation Database
lists: GoMapMan
lists: GEPAT
lists: Git
lists: GNUMAP
lists: Generic GO Term Finder
lists: Graph2GO
lists: Gene Ontology
lists: Gaggle
lists: GO2MSIG
lists: GRASS
lists: Bioinformatic Harvester IV (beta) at Karlsruhe Institute of Technology
lists: Genovar
lists: HASTE-project
lists: H-InvDB
lists: Homologous Sequences in Ensembl Animal Genomes
lists: Google
lists: IMGT/HLA
lists: Human Gene Mutation Database
lists: GTDB-Tk
lists: G protein receptor interaction feature finding instrument
lists: HubMed
lists: HPEPDOCK Server
lists: HUGE - Human Unidentified Gene-Encoded large proteins
lists: HAPLOCLUSTERS
lists: HiCUP
lists: International HapMap Project
lists: HiPipe
lists: HTR
lists: HINT
lists: Hybrid-denovo
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lists: miROrtho: the catalogue of animal microRNA genes
lists: NCBI
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lists: mirTools
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lists: Multiple Myeloma survival predictor
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lists: miRpathDB
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lists: PartiGeneDB
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lists: PanoramaWeb
lists: Omics Data Paper Generator
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lists: PDBe - Protein Data Bank in Europe
lists: Pash 3.0
lists: Orientations of Proteins in Membranes database
lists: Pathbase
lists: PEDHUNTER
lists: PAZAR
lists: Peakzilla
lists: PeakAnalyzer
lists: Pairwise Conservation Scores - An Algorithm to Identify Conserved K-mers
lists: Pedigree-Draw
lists: OLego
lists: Parliament2
lists: PEDIGREEQUERY
lists: PeakSeq
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lists: PhaseME
lists: PHI-base
lists: PHYLIP
lists: PDB Finder
lists: Phylogeny.fr
lists: PRICE
lists: PennSeq
lists: Illuminating the Druggable Genome
lists: Philius
lists: Phenotypes and eXposures Toolkit
lists: PhyloPat
lists: PicTar
lists: Eddy Lab Software
lists: Protein Information Resource
lists: PhyML
lists: PhenoMan
lists: PeptideAtlas
lists: PIRSF
lists: Polygenic Pathways
lists: PLANTTFDB
lists: pNovo+
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lists: Plant Co-expression Annotation Resource
lists: Rampart
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lists: phytools
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lists: vegan
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lists: SPAdes
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lists: TreeView
lists: Viewmol
lists: Vascular Modeling Toolkit
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lists: ARB project
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lists: BRAKER
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lists: CellProfiler Image Analysis Software
lists: ChIPSeq Peak Finder
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lists: Dazzler
lists: DCMTK: DICOM Toolkit
lists: DeepNano
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lists: CCS
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lists: TREE-PUZZLE
lists: umis
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lists: toppred
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lists: Tn-seq explorer
lists: Tombo
lists: TopHat-Recondition
is related to: FreeContact
is parent organization of: neurodebian
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Free, Freely available |
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nlx_151598 |
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SCR_006638 |
Debian - The universal operating system, Debian GNU/Linux |
2026-08-01 12:03:13 |
50 |
NIH Data Sharing Repositories
Resource Report
Resource Website
1+ mentions
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NIH Data Sharing Repositories (RRID:SCR_003551)
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NIH Data Sharing Repositories
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data set, data or information resource
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A listing of NIH supported data sharing repositories that make data accessible for reuse. Most accept submissions of appropriate data from NIH-funded investigators (and others), but some restrict data submission to only those researchers involved in a specific research network. Also included are resources that aggregate information about biomedical data and information sharing systems. The table can be sorted according by name and by NIH Institute or Center and may be searched using keywords so that you can find repositories more relevant to your data. Links are provided to information about submitting data to and accessing data from the listed repositories. Additional information about the repositories and points-of-contact for further information or inquiries can be found on the websites of the individual repositories.
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data repository
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lists: NIDDK Information Network (dkNET)
lists: Nuclear Receptor Signaling Atlas
lists: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB)
lists: Eukaryotic Pathogen Database Resources
lists: Immune Epitope Database and Analysis Resource (IEDB)
lists: LONI Image and Data Archive
lists: BEI Resource Repository
lists: Nanomaterial Registry
lists: Metabolomics Workbench
lists: National Database for Clinical Trials related to Mental Illness
lists: RDoCdb
lists: Database of Interacting Proteins (DIP)
lists: NIH MRI Study of Normal Brain Development
lists: PubChem
lists: 1000 Functional Connectomes Project
lists: Parkinson's Progression Markers Initiative
lists: Mouse Genome Informatics (MGI)
lists: Federal Interagency Traumatic Brain Injury Research Informatics System
lists: NIH Human Connectome Project
lists: Biological General Repository for Interaction Datasets (BioGRID)
lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC)
lists: Nanomaterial Registry
is related to: NIH MRI Study of Normal Brain Development
is related to: Eukaryotic Pathogen Database Resources
is related to: Parkinson's Progression Markers Initiative
is related to: Federal Interagency Traumatic Brain Injury Research Informatics System
is related to: NIH Human Connectome Project
is related to: National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS)
is related to: Cancer Imaging Archive (TCIA)
is related to: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC)
is related to: NIDDK Information Network (dkNET)
is related to: UniProt
is related to: GeneNetwork
is related to: Zebrafish Information Network (ZFIN)
is related to: WormBase
is related to: Database of Interacting Proteins (DIP)
is related to: iDASH
is related to: PubChem
is related to: CardioVascular Research Grid (CVRG)
is related to: 1000 Functional Connectomes Project
is related to: Mouse Genome Informatics (MGI)
is related to: FlyBase
is related to: PeptideAtlas
is related to: Biological General Repository for Interaction Datasets (BioGRID)
is related to: GRDR
is related to: National Institute on Drug Abuse Center for Genetic Studies
is related to: BEI Resource Repository
has parent organization: National Library of Medicine
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NIH |
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nlx_157683 |
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SCR_003551 |
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2026-08-01 12:11:29 |
4 |
Integrated Manually Extracted Annotation
Resource Report
Resource Website
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Integrated Manually Extracted Annotation (RRID:SCR_008876)
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Integrated MEA, Integrated LinkOut, Manually Extracted Annotation,
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data or information resource, database
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A virtual database of annotations made by 50 database providers (April 2014) - and growing (see below), that map data to publication information. All NIF Data Federation sources can be part of this virtual database as long as they indicate the publications that correspond to data records. The format that NIF accepts is the PubMed Identifier, category or type of data that is being linked to, and a data record identifier. A subset of this data is passed to NCBI, as LinkOuts (links at the bottom of PubMed abstracts), however due to NCBI policies the full data records are not currently associated with PubMed records. Database providers can use this mechanism to link to other NCBI databases including gene and protein, however these are not included in the current data set at this time. (To view databases available for linking see, http://www.ncbi.nlm.nih.gov/books/NBK3807/#files.Databases_Available_for_Linking ) The categories that NIF uses have been standardized to the following types: * Resource: Registry * Resource: Software * Reagent: Plasmid * Reagent: Antibodies * Data: Clinical Trials * Data: Gene Expression * Data: Drugs * Data: Taxonomy * Data: Images * Data: Animal Model * Data: Microarray * Data: Brain connectivity * Data: Volumetric observation * Data: Value observation * Data: Activation Foci * Data: Neuronal properties * Data: Neuronal reconstruction * Data: Chemosensory receptor * Data: Electrophysiology * Data: Computational model * Data: Brain anatomy * Data: Gene annotation * Data: Disease annotation * Data: Cell Model * Data: Chemical * Data: Pathways For more information refer to Create a LinkOut file, http://neuinfo.org/nif_components/disco/interoperation.shtm Participating resources ( http://disco.neuinfo.org/webportal/discoLinkoutServiceSummary.do?id=4 ): * Addgene http://www.addgene.org/pgvec1 * Animal Imaging Database http://aidb.crbs.ucsd.edu * Antibody Registry http://www.neuinfo.org/products/antibodyregistry/ * Avian Brain Circuitry Database http://www.behav.org/abcd/abcd.php * BAMS Connectivity http://brancusi.usc.edu/ * Beta Cell Biology Consortium http://www.betacell.org/ * bioDBcore http://biodbcore.org/ * BioGRID http://thebiogrid.org/ * BioNumbers http://bionumbers.hms.harvard.edu/ * Brain Architecture Management System http://brancusi.usc.edu/bkms/ * Brede Database http://hendrix.imm.dtu.dk/services/jerne/brede/ * Cell Centered Database http://ccdb.ucsd.edu * CellML Model Repository http://www.cellml.org/models * CHEBI http://www.ebi.ac.uk/chebi/ * Clinical Trials Network (CTN) Data Share http://www.ctndatashare.org/ * Comparative Toxicogenomics Database http://ctdbase.org/ * Coriell Cell Repositories http://ccr.coriell.org/ * CRCNS - Collaborative Research in Computational Neuroscience - Data sharing http://crcns.org * Drug Related Gene Database https://confluence.crbs.ucsd.edu/display/NIF/DRG * DrugBank http://www.drugbank.ca/ * FLYBASE http://flybase.org/ * Gene Expression Omnibus http://www.ncbi.nlm.nih.gov/geo/ * Gene Ontology Tools http://www.geneontology.org/GO.tools.shtml * Gene Weaver http://www.GeneWeaver.org * GeneDB http://www.genedb.org/Homepage * Glomerular Activity Response Archive http://gara.bio.uci.edu * GO http://www.geneontology.org/ * Internet Brain Volume Database http://www.cma.mgh.harvard.edu/ibvd/ * ModelDB http://senselab.med.yale.edu/modeldb/ * Mouse Genome Informatics Transgenes ftp://ftp.informatics.jax.org/pub/reports/MGI_PhenotypicAllele.rpt * NCBI Taxonomy Browser http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html * NeuroMorpho.Org http://neuromorpho.org/neuroMorpho * NeuronDB http://senselab.med.yale.edu/neurondb * SciCrunch Registry http://neuinfo.org/nif/nifgwt.html?tab=registry * NIF Registry Automated Crawl Data http://lucene1.neuinfo.org/nif_resource/current/ * NITRC http://www.nitrc.org/ * Nuclear Receptor Signaling Atlas http://www.nursa.org * Olfactory Receptor DataBase http://senselab.med.yale.edu/ordb/ * OMIM http://omim.org * OpenfMRI http://openfmri.org * PeptideAtlas http://www.peptideatlas.org * RGD http://rgd.mcw.edu * SFARI Gene: AutDB https://gene.sfari.org/autdb/Welcome.do * SumsDB http://sumsdb.wustl.edu/sums/ * Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat http://www.temporal-lobe.com/ * The Cell: An Image Library http://www.cellimagelibrary.org/ * Visiome Platform http://platform.visiome.neuroinf.jp/ * WormBase http://www.wormbase.org * YPED http://medicine.yale.edu/keck/nida/yped.aspx * ZFIN http://zfin.org
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biomedical, bibliographic, linkout, literature
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is used by: NIF Data Federation
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: Gene Ontology Tools
is related to: BAMS Connectivity
is related to: Biological General Repository for Interaction Datasets (BioGRID)
is related to: BioNumbers
is related to: PubMed
is related to: Brain Architecture Management System
is related to: CellML Model Repository
is related to: CHEBI
is related to: Comparative Toxicogenomics Database (CTD)
is related to: Coriell Cell Repositories
is related to: Drug Related Gene Database
is related to: DrugBank
is related to: Gene Weaver
is related to: Internet Brain Volume Database
is related to: Cell Centered Database
is related to: Brede Database
is related to: ModelDB
is related to: NeuronDB
is related to: NeuroMorpho.Org
is related to: Nuclear Receptor Signaling Atlas
is related to: Cell Image Library (CIL)
is related to: Animal Imaging Database
is related to: Olfactory Receptor DataBase
is related to: Glomerular Activity Response Archive
is related to: CRCNS
is related to: OMIM
is related to: Rat Genome Database (RGD)
is related to: Visiome Platform
is related to: NIDA Data Share
is related to: bioDBcore
is related to: Addgene
is related to: Antibody Registry
is related to: Beta Cell Biology Consortium
is related to: FlyBase
is related to: SumsDB
is related to: SciCrunch Registry
is related to: Mouse Genome Informatics Transgenes
is related to: NCBI Taxonomy
is related to: OpenNeuro
is related to: PeptideAtlas
is related to: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat
is related to: NIF Registry Automated Crawl Data
is related to: AutDB
is related to: Gene Expression Omnibus
is related to: Gene Ontology
is related to: Avian Brain Circuitry Database
is related to: Zebrafish Information Network (ZFIN)
is related to: GeneDB
is related to: WormBase
is related to: YPED
has parent organization: Integrated
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PMID:20387131
PMID:18975149 |
Data are licensed by their respective owners. Use and distribution is subject to the Terms of Use by the original resource as well as the, Creative Commons Attribution License |
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nlx_149407 |
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http://neuinfo.org/nif/nifgwt.html?query=nlx_149407, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_149407-1 |
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SCR_008876 |
Integrated Manually Extracted Annotation View, NIF Integrated LinkOut, NIF Integrated Manually Extracted Annotation, NIF LinkOut |
2026-08-01 12:10:10 |
0 |
