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Resource Name Sort Ascending Sort Descending	Proper Citation Sort Ascending Sort Descending	Abbreviations Sort Ascending Sort Descending	Resource Type Sort Ascending Sort Descending	Description	Keywords Sort Ascending Sort Descending	Resource Relationships Sort Ascending Sort Descending	Related Condition Sort Ascending Sort Descending	Funding Sort Ascending Sort Descending	Defining Citation Sort Ascending Sort Descending	Availability	Alternate IDs	Alternate URLs	Old URLs	Resource ID	Synonyms Sort Ascending Sort Descending	Record Last Update Sort Ascending Sort Descending	Mentions Count Sort Ascending Sort Descending
ArrayExpress Resource Report Resource Website 5000+ mentions	ArrayExpress (RRID:SCR_002964)	ArrayExpress	catalog, data or information resource, data repository, database, service resource, storage service resource	International functional genomics data collection generated from microarray or next-generation sequencing (NGS) platforms. Repository of functional genomics data supporting publications. Provides genes expression data for reuse to the research community where they can be queried and downloaded. Integrated with the Gene Expression Atlas and the sequence databases at the European Bioinformatics Institute. Contains a subset of curated and re-annotated Archive data which can be queried for individual gene expression under different biological conditions across experiments. Data collected to MIAME and MINSEQE standards. Data are submitted by users or are imported directly from the NCBI Gene Expression Omnibus.	gold, standard, functional, genomics, data, collection, microarray, next, generation, sequencing, NGS, repository	uses: MIAME uses: MINSEQE uses: Gene Expression Omnibus is used by: NIF Data Federation is used by: BioSample Database at EBI is used by: Integrated Datasets is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: DataCite is listed by: OMICtools is listed by: re3data.org is related to: DDBJ Omics Archive is related to: MIAME is related to: Gene Expression Atlas is related to: Experimental Factor Ontology is related to: Bgee: dataBase for Gene Expression Evolution is related to: ISA Infrastructure for Managing Experimental Metadata is related to: FlyMine is related to: MAGE-TAB is related to: Experimental Factor Ontology is related to: Magic is related to: ArrayExpress (R) is related to: CancerMIRNome has parent organization: European Bioinformatics Institute		European Commission ; European Union ; Gen2Phen 200754; NHGRI P41 HG003619; SLING 226073	PMID:23193272 PMID:21071405	Available Public or Private, Free, Available for download, The community can contribute to this resource, Acknowledgement requested, to access private data registration required	OMICS_01023, nif-0000-30123, r3d100010222	http://www.ebi.ac.uk/microarray-as/ae, https://doi.org/10.17616/R3302G		SCR_002964	, ArrayExpress, ArrayExpress - functional genomics data, ArrayExpress Archive	2026-08-21 12:36:53	7814
ArrayExpress (R) Resource Report Resource Website 1+ mentions	ArrayExpress (R) (RRID:SCR_000120)	ArrayExpress (R)	software resource	Software to access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet	microarray	is listed by: OMICtools is related to: ArrayExpress has parent organization: Bioconductor has parent organization: European Bioinformatics Institute			PMID:19505942	Free, Available for download, Freely available	OMICS_01974			SCR_000120		2026-08-15 11:21:40	1
OMICtools Resource Report Resource Website 10+ mentions	OMICtools (RRID:SCR_002250)	OMICtools	catalog, data or information resource, database	THIS RESOURCE IS NO LONGER IN SERVICE. Documented Jul 19, 2024. Metadatabase manually curated that provides web accessible tools related to genomics, transcriptomics, proteomics and metabolomics. Used as informative directory for multi-omic data analysis.	metadatabase, manually, curated, tool, genomic, transcriptomic, proteomic, metabolomic, data	lists: ncdfFlow lists: BSmooth-align lists: 4Peaks lists: CSDeconv lists: Tablet lists: GenomicRanges lists: SNPSVM lists: ReadqPCR lists: SP-Designer lists: CorMut lists: ChIPmeta lists: FACS lists: metaSeq lists: Dissect lists: Fusion Analyser lists: FusionCatcher lists: GASV lists: GHOSTM lists: nFuse lists: PD5 lists: Patchwork lists: QuadGT lists: VariantAnnotation lists: ReQON lists: SnowsShoes-FTD lists: timecourse lists: SOAPfuse lists: SOAPfusion lists: pFind Studio: pLink lists: Spotfinder lists: AbMining ToolBox lists: SNAVI lists: MetAssign lists: JChemPaint lists: siRNArules lists: AutoPrime lists: RmiR.Hs.miRNA lists: MysiRNA-designer lists: TACOA lists: Treephyler lists: MedGen lists: D-Tailor lists: BioLemmatizer lists: AffyRNADegradation lists: Orphelia lists: ArrayExpress (R) lists: Parallel-META lists: CovalentDock Cloud lists: DOCK lists: exomeSuite lists: SPAdes lists: Sequence Read Format lists: FastQ Screen lists: GEOquery lists: Bovine Genome Database lists: GISTIC lists: DESeq lists: Postgwas lists: BLASTPLOT lists: miRanalyzer lists: Magnolya lists: GMATo lists: GemSIM lists: Grinder lists: Illuminate lists: RNAcontext lists: MIMOSA lists: F2DockClient lists: FlexX lists: Glide lists: GOLD lists: Molegro Virtual Docker lists: Sanjeevini lists: SODOCK lists: HEM lists: Surflex-Dock lists: Cascleave lists: MetaDE lists: Cell Death Proteomics Database lists: GPS-Calpain Cleavage Detector lists: GraBCas lists: c3net lists: Context Likelihood of Relatedness lists: GENIE3 lists: Inferelator lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks lists: MRNet lists: UnSplicer lists: Duplicate reads removal lists: PEpiD lists: TAPIR: target prediction for plant microRNAs lists: iOMICS lists: Megraft lists: VARiD lists: Cistrome lists: PSGInfer lists: MochiView lists: RSEM lists: RNAmotifs lists: M(at)CBETH lists: MS-Spectre lists: Quant lists: RNASeqReadSimulator lists: iFad lists: GramCluster lists: GProX lists: PeptideProphet lists: CNTools lists: Lasergene's SeqMan Pro lists: ProteinProphet lists: OMSSAPercolator lists: Flicker lists: cn.FARMS lists: LIPAGE lists: DNASTAR: Lasergene Core Suite lists: Clonality lists: oneClickCGH lists: CGH Fusion lists: Screensaver lists: fqzcomp lists: ArrayPlex lists: MiRdup lists: MeQA lists: Methyl-Analyzer lists: Annotare lists: CpGassoc lists: Koadarray lists: RADtools lists: rtd lists: ABrowse lists: GPViz lists: cuteNMR lists: Jnomics lists: JMolDraw lists: CGAP-Align lists: ARACHNE lists: Kinannote lists: CLC Main Workbench lists: ParseCNV lists: TAPS lists: PyroHMMsnp lists: TransView lists: pvac lists: riboPicker lists: NucleoFinder lists: bzip2 lists: GENSENG lists: AS-Peak lists: is-rSNP lists: ILLUMINUS lists: QUALIFIER lists: FunctSNP lists: Micro-Analyzer lists: flowStats lists: flowPeaks lists: metaMA lists: rTANDEM lists: flowFlowJo lists: TargetCaller lists: PSCBS lists: iASeq lists: d2-tools lists: PEPPER lists: OLINgui lists: TNO-DECO lists: SigFuge lists: stsPlots lists: Sulfinator lists: Rdisop lists: pbcore lists: GeneExpressionSignature lists: sybil - Efficient Constrained Based Modelling in R lists: msbwt lists: MetaDrug lists: Reprever lists: POPBAM lists: SAMBLASTER lists: SpeedSeq lists: pyQPCR lists: RefFinder lists: PGS lists: miRprimer lists: iBMQ lists: NIMBL lists: TDARACNE lists: bamova lists: BAIT lists: ARNIE lists: fourSig lists: Mfuzz lists: MaryGold lists: TOPPAS lists: SPHINX lists: PhyloPythia lists: MATCHCLIP lists: mzMatch lists: Sequence Search and Alignment by Hashing Algorithm lists: ESPRIT lists: DySC lists: FPSAC lists: Scaffold builder lists: SNPiR lists: ACCUSA2 lists: MuTect lists: Pindel lists: rSeq lists: GERP lists: SiPhy lists: wANNOVAR lists: ViReMa lists: Smart Dictionary Lookup lists: VariantMaster lists: GeneWays lists: AdaptiveCrawler lists: NGS-Cleaner lists: flowQ lists: Database Enabled Code for Ideal Probe Hybridization Employing R lists: NGSmethPipe lists: Pyrocleaner lists: DecGPU lists: drFAST lists: MPscan lists: TAPyR lists: MutPred Splice lists: ContEst lists: Mini Analysis Guide for Microarrays lists: DDBJ Omics Archive lists: Chromas lists: OnEx - Ontology Evolution Explorer lists: BEBaC lists: FlipFlop lists: Phosphor Antibody Array Data Analysis lists: PhenoFam lists: forqs lists: GMcloser lists: GenomeWeb lists: Bycom lists: CorQ lists: NGS tools for the novice lists: Opera lists: SRMA lists: DeNovoGear lists: VarB lists: BAMseek lists: TriageTools lists: clipcrop lists: detecttd lists: FastUniq lists: GEUVADIS lists: TMAP lists: BISMA lists: FineSplice lists: RMAP lists: Sequencing Analysis Software lists: BLASR lists: GlycoWorkbench lists: jmzIdentML API lists: SciRoKo lists: HapCompass lists: JBrowse lists: DSRC lists: fastqz lists: GDC lists: GRS lists: PREFAB lists: BLASTP lists: Google Compute Engine lists: SplitSeek lists: ASC lists: NPEBseq lists: FUSIM lists: Geoffs Bio-Directories lists: Phred lists: MassGenomics lists: Illuminator lists: BAC lists: targetscan.Hs.eg.db lists: RmiR lists: MmPalateMiRNA lists: Starr lists: bsseq lists: Qvalue lists: ExomePeak lists: NextGenSeq(at)nature.com lists: AutoAssemblyD lists: CUDA-EC lists: rGADEM lists: qips lists: PICS lists: Jmosaics lists: SparseAssembler lists: BreakFusion lists: ParticleCall lists: DSGseq lists: R453Plus1Toolbox lists: SynView lists: ShortFuse lists: Cancer Gene Index lists: jmzML lists: CASVM lists: Birdseed lists: Reaper - Demultiplexing trimming and filtering sequencing data lists: GimmeMotifs lists: skewer lists: flowWorkspace lists: massiR lists: Transposon Insertion Finder lists: Shimmer lists: GenVision lists: DiMO lists: MetaPhyl lists: WiggleTools lists: EMI lists: SplicePlot lists: CrossMap lists: GraphIBD lists: rbsurv lists: Skylign lists: HMMvar lists: tbvar lists: STRViper lists: Breakway lists: Genometa lists: CATCHprofiles lists: VAAL lists: SLOPE lists: BreakSeq lists: Anchored Assembly lists: Bionimbus lists: ChIPMunk lists: RDPipeline lists: PeakAnalyzer lists: SomaticCall lists: Baa.pl lists: VirusHunter lists: seq2HLA lists: MUMmerGPU lists: GeneMeta lists: GenoMiner lists: GenoViewer lists: sim4cc lists: GenomicTools lists: Omixon Target HLA Typing lists: Omixon Target Data Analysis lists: PARalyzer lists: QualiMap lists: Lab7 lists: mlgt lists: BSSim lists: Golden Helix GenomeBrowse lists: HiPipe lists: MADAM lists: Microarray Data Analysis System lists: Automated Microarray Pipeline lists: MergeMaid lists: OmicsOffice for NGS SeqSolve lists: categoryCompare lists: metahdep lists: Plantagora lists: QUAST lists: TileQC lists: VectorFriends lists: vcflib lists: PHACCS lists: Sequedex lists: Genome Trax lists: VCFtools lists: NGSUtils lists: ChIP-seq lists: Tally lists: mapDamage lists: freeIbis lists: piCALL lists: ERGO lists: TALLYMER lists: KMC lists: DSK lists: Mutation Surveyor lists: BFCounter lists: snpStats: SnpMatrix and XSnpMatrix classes and methods lists: CNVtools lists: CGEN lists: RCASPAR lists: iterativeBMAsurv lists: multtest lists: globaltest lists: SABER lists: Local Ancestry in adMixed Populations lists: GemTools lists: MinimumDistance lists: ipPCA lists: ADMIXTURE lists: frappe lists: Mutascope lists: metabnorm lists: VegaMC lists: VanillaICE lists: SNPchip lists: SMAP lists: quantsmooth lists: mBPCR lists: ITALICS lists: GenoSet lists: exomeCopy lists: CGHregions lists: CGHbase lists: BlindCall lists: beadarraySNP lists: SSCprofiler lists: CGH-Explorer lists: GLAD lists: SNP and Variation Suite SNP Analysis lists: SNP and Variation Suite CNV Analysis lists: ProbRNA lists: methylMnM lists: methyAnalysis lists: les lists: ARRmNormalization lists: ChIPsim lists: Sherman lists: yaqcaffy lists: wateRmelon lists: sRAP lists: spotSegmentation lists: SNM lists: SNAGEE lists: Simpleaffy lists: qcmetrics lists: OLIN lists: MANOR lists: limmaGUI lists: ffpe lists: dyebias lists: DEXUS lists: BeadDataPackR lists: aroma.light lists: ArrayTools lists: beadarray lists: arrayQuality lists: arrayMvout lists: affyQCReport lists: affyPLM lists: affylmGUI lists: AffyExpress lists: waveTiling lists: KAnalyze lists: gprege lists: oneChannelGUI lists: CYCLE lists: LMGene lists: factDesign lists: pickgene lists: betr lists: NGSrich lists: SCAN.UPC lists: arrayQualityMetrics lists: CALIB lists: DEDS lists: Harshlight lists: MiChip lists: OCplus lists: bridge lists: FARMS lists: fRMA lists: genArise lists: lapmix lists: maCorrPlot lists: maSigPro lists: MACAT lists: maigesPack lists: MDQC lists: metaArray lists: nnNorm lists: plgem lists: PVCA lists: RAMA lists: stepNorm lists: virtualArray lists: LPE lists: DDBJ Sequence Read Archive lists: WegoLoc lists: Mugsy lists: Mspire-Simulator lists: CytoSPADE lists: vsn lists: ACME lists: GenGIS lists: CoGAPS lists: NTAP lists: ToppCluster lists: PyLOH lists: Nebula lists: Sequencher lists: flowFP lists: ChIPseeqer lists: CisGenome lists: CGHcall lists: rMAT lists: TileMap lists: Clustal Omega lists: BLASTN lists: SeqScape Software lists: BACContigEditor lists: Human Gene Mutation Database lists: AnimalTFDB lists: asSeq lists: Cuffdiff lists: BLASTX lists: SLqPCR lists: rSeqDiff lists: AffinDB lists: Enriched Domain Detector lists: A Classification of Mobile genetic Elements lists: PELICAN lists: nondetects lists: rlsim lists: Chilibot: Gene and Protein relationships from MEDLINE lists: unifiedWMWqPCR lists: HAPLOPAINTER lists: HOMOZYGOSITYMAPPER lists: QuasiSeq lists: sSeq lists: GERMLINE lists: MCMC.qpcr lists: CNVrd2 lists: TaLasso lists: pairedBayes lists: RNASeqBias lists: plateCore lists: PLINK lists: MACH 1.0 lists: PennSeq lists: FACTA+. lists: Prediction of Amyloid Structure Aggregation lists: TANGO lists: DNACLUST lists: InterMine lists: MSClust lists: ReCount - A multi-experiment resource of analysis-ready RNA-seq gene count datasets lists: RSVSim lists: TCC lists: SAMstrt lists: pRESTO lists: MEME Suite - Motif-based sequence analysis tools lists: PoissonSeq lists: CQN lists: GLiMMPS lists: TEMP lists: BEAGLE lists: SPP lists: BIRDSUITE lists: NASTIseq lists: BREAKDANCER lists: CAROL lists: COMPASS lists: CASAVA lists: flowClust lists: HSA lists: SPADE lists: AStalavista lists: Visual Molecular Dynamics lists: EXTREME lists: CYRILLIC lists: DINDEL lists: ASprofile lists: OrderedList lists: GenABEL lists: CCAT lists: Alt Event Finder lists: BroadPeak lists: SamSPECTRAL lists: THetA lists: TCW lists: GATK lists: Degust lists: flowUtils lists: DAVID lists: RchyOptimyx lists: StatAlign lists: Arabidopsis thaliana Protein Interactome Database lists: FGED lists: ExpressionPlot lists: S-MART lists: Pecan lists: SeqMonk lists: Ray lists: tbrowse lists: Bacteriome.org lists: Apollo lists: RAVEN lists: PEDIGRAPH lists: BAliBASE lists: TEQC lists: rSNPs MAPPER lists: rSNPBase lists: SNP Function Portal lists: flowType lists: SNPper lists: MADELINE lists: CanSNPer lists: ADaCGH2 lists: SGA lists: NormaCurve lists: GapMis lists: TRAMS lists: SNPMeta lists: SNPAAMapper lists: METAL lists: OLORIN lists: openADAM lists: SeqEM lists: SHARCGS lists: DMET-Analyzer lists: PEDHUNTER lists: AffyPipe lists: pSTIING lists: PTMcode lists: SHORTY lists: POLYMUTT lists: TissueNet - The Database of Human Tissue Protein-Protein Interactions lists: TRIP Database lists: SNVer lists: BISC lists: Primate Orthologous Exon Database lists: PurBayes lists: PyroHMMvar lists: flowViz lists: ChIPSeq Peak Finder lists: SpliceAid-F lists: Vennt lists: flowTrans lists: Spliceosome Database lists: cisRED: cis-regulatory element lists: ASPicDB lists: SAMTOOLS lists: HEXEvent lists: DBASS lists: FlyFactorSurvey lists: SNAP - SNP Annotation and Proxy Search lists: STIFDB lists: Cake lists: MPromDb lists: ProTISA lists: circlize lists: AmiGO lists: flowQB lists: Cinteny lists: RegPrecise lists: STRUCTURE lists: SVA lists: SYZYGY lists: TcoF lists: Matchprot lists: WebGeSTer DB lists: pfSNP lists: shinyTANDEM lists: CistromeMap lists: metaRNASeq lists: ZOOM lists: flowPlots lists: ImaGene lists: VAAST lists: ARACNE lists: FR-HIT lists: PROVEAN lists: flowPhyto lists: flowCore lists: flowMerge lists: RankAggreg lists: ConsensusPathDB lists: MAIA (Microarray Image Analysis) lists: CORUM lists: CoryneRegNet lists: miso-lims lists: COSMIC - Catalogue Of Somatic Mutations In Cancer lists: cpnDB: A Chaperonin Database lists: flowMap lists: rmeta lists: flowMeans lists: CTCFBSDB lists: spliceR lists: flowMatch lists: flowFit lists: DEMI lists: Binding MOAD lists: DBD: Transcription factor prediction database lists: CodonCodes TraceViewer lists: RelocaTE lists: MAGE lists: flowCyBar lists: Iterative Signature Algorithm lists: Variant Reporter Software lists: RepARK lists: PolyPhred lists: dbSNP lists: BEETL-fastq lists: DWGSIM lists: Ensembl lists: DBTBS lists: MIAME lists: MAQC lists: HaploClique lists: DBTSS: Database of Transcriptional Start Sites lists: DNA DataBank of Japan (DDBJ) lists: ISO lists: SBARS lists: Clinical and Laboratory Standards Institute lists: JGI Genome Portal lists: Cancer Genomics Consortium lists: BEAT lists: DOMINO: Domain peptide interactions lists: R Tutorial - An R Introduction to Statistics lists: R Tutorial lists: DOMINE: Database of Protein Interactions lists: GenomeSmasher lists: DOSY Toolbox lists: MUMA lists: Database of Rice Transcription Factors lists: VennDiagram lists: Quick-R lists: EcoCyc lists: Tree of Life lists: flowBeads lists: EDAS - EST-Derived Alternative Splicing Database lists: eggNOG lists: NRDR lists: YLoc lists: CAMERA - Collection of annotation related methods for mass spectrometry data lists: EID: Exon-Intron Database lists: WoLF PSORT lists: Entrez Gene lists: Mason lists: QualitySNPng lists: EPDnew lists: realSFS lists: pymzML lists: RUbioSeq lists: PBSIM lists: PennCNV lists: pIRS lists: PeptideShaker lists: ShotGun lists: Gibbs Motif Sampler lists: Zebrafish Information Network (ZFIN) lists: Wessim lists: BioStar lists: MBASED lists: discoSnp lists: RVD lists: SEEK lists: MethylAid lists: ExomeDepth lists: libmgf lists: Autophagy Database lists: T3DB lists: RopeBWT2 lists: e-Driver lists: sapFinder lists: PharmGKB lists: CTF lists: SuperTarget lists: DrugBank lists: PANDAseq lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: leeHom lists: Reflect lists: Mapix lists: Rainbow lists: CASBAH lists: TelSeq lists: Pathview lists: GLProbs lists: rBiopaxParser lists: DSS lists: GATE lists: NetPathMiner lists: NMR metabolomics database of Linkoping lists: GenBank lists: HINT lists: libCSAM lists: RNA Abundance Database lists: GeneCards lists: BINOCh lists: AliView lists: TherMos lists: ANDES lists: PacmonSTR lists: RMassBank lists: FisHiCal lists: Mutation Annotation and Genomic Interpretation lists: Circleator lists: IMEx - The International Molecular Exchange Consortium lists: Batch Oligo Selection Script lists: iontree lists: MicroVigene lists: Greengenes lists: Basic4Cseq lists: rDock lists: hot scan lists: International HapMap Project lists: BiGGR lists: mzR lists: PAPi lists: pNovo+ lists: COV2HTML lists: CODEHOP lists: CNVassoc lists: PRO lists: Hollywood lists: StreamingTrim lists: pLabel lists: HomoloGene lists: aCGH.Spline lists: pBuild lists: Time-series RNA-seq Analysis Package lists: CGHnormaliter lists: Type-III-Secretion-System related database lists: SMRT-Analysis lists: CPTRA lists: mtDB - Human Mitochondrial Genome Database lists: AltAnalyze - Alternative Splicing Analysis Tool lists: Chimera lists: IMG System lists: Babelomics lists: MRFSEQ lists: ms lims lists: ChIPMonk lists: Gel2DE lists: UCSF Spot lists: ProRata lists: R-pbutils lists: MITOMAP - A human mitochondrial genome database lists: NOISeq lists: Dpos lists: Gene Weaver lists: pFind lists: Canadian College of Medical Geneticists lists: BRAIN lists: Isopat lists: R-pbh5 lists: pbh5tools lists: SMRT View lists: JASPAR lists: enviPat lists: bwtool lists: MoSDi lists: tweeDEseq lists: DIALIGN lists: PacBioToCA lists: DiNuP lists: Gutentag lists: Parametric Time Warping lists: SurvComp lists: SASqPCR lists: enviPick lists: GeneFisher lists: Triplex lists: MPprimer lists: MIPE lists: MFEprimer lists: DnaSP lists: FAS-DPD lists: SURPI lists: MAPPER - Multi-genome Analysis of Positions and Patterns of Elements of Regulation lists: MachiBase lists: Primer3Plus lists: e-PCR lists: NeuroMab lists: In-Silico PCR lists: JETTA lists: MapViewer lists: Primer-BLAST lists: WormBase lists: eQtlBma lists: JuncBASE lists: MethDB lists: pairheatmap lists: MISO lists: HYDEN lists: mrsFAST lists: PredictNLS lists: mrCaNaVaR lists: NovelSeq lists: PlantLoc lists: Primer3 lists: FastSNP lists: Proteome Analyst Specialized Subcellular Localization Server lists: NYCE lists: GeneScissors lists: ngLOC lists: MultiLoc lists: GeneCruiser lists: MetaLocGramN lists: FastPCR lists: miRNAMap lists: HUPO Proteomics Standards Initiative lists: SaskPrimerFS lists: rDiff lists: Database of Interacting Proteins (DIP) lists: Solas lists: Pipeliner lists: iLoc-Animal lists: QDNAseq lists: ResponseNet lists: SynSysNet lists: XORRO lists: Stacks lists: SECISearch3 and Seblastian lists: SALT lists: HyperTree lists: Primer Designer lists: r3Cseq lists: Gene Set Enrichment Analysis lists: Piano lists: PHAST lists: NHGRI: Establishing a Central Resource of Data from Genome Sequencing Projects lists: NGSadmix lists: Gemi lists: Talking Glossary of Genetic Terms lists: PathGuide: the pathway resource list lists: SplicingCompass lists: RNAhybrid lists: LUMPY lists: Geospiza lists: SpliCQ lists: ORFprimer lists: JCVI Primer Designer lists: Assembly Based ReAligner lists: deFuse lists: Xenbase lists: PoPoolation2 lists: OmicCircos lists: Amplicon lists: PrimerSeq lists: Genedata Expressionist lists: biobambam lists: RCircos lists: ggbio lists: DAFGA lists: MIPgen lists: PicTar lists: BlockClust lists: PIRSF lists: miR-PREFeR lists: MouseNET lists: PlantProm DB lists: MAGI lists: PLANTTFDB lists: ALDEx2 lists: qBasePLUS lists: RefGenes lists: HTqPCR lists: BestKeeper lists: NanoStringNorm lists: NormFinder lists: NormqPCR lists: PolymiRTS lists: PPDB: Plant Promoter Database lists: ddCt lists: GEOSS lists: PReMod lists: EasyqpcR lists: NanoStriDE lists: GBSA lists: LaSSO lists: NAPPA lists: nSolver Analysis Software lists: MAGENTA lists: MetABEL lists: ProNIT lists: genomation lists: metagen lists: BMIQ lists: FadE lists: metaphor lists: SWAN lists: PROSITE lists: Parseq lists: qPrimerDepot lists: Bpipe lists: Nestly lists: Snakemake lists: SNAPE-pooled lists: NGSANE lists: jmzTab lists: JISTIC lists: Savant lists: MetaSKAT lists: Human Variome Project lists: PoPoolation lists: RefSeq lists: MultiPhen lists: RegulonDB lists: MF-GE lists: PheWAS R Package lists: EBSeq lists: MSMS lists: RAREMETAL lists: RevMan lists: GEPAT lists: Polyester lists: SET lists: J-Express lists: UEA sRNA toolkit lists: Osprey lists: RINS lists: PyroBayes lists: PEAR lists: JATAC lists: SeqExpress lists: Quantitative Enrichment of Sequence Tags lists: Pash 3.0 lists: Factorbook lists: FlyTF.org lists: My Cancer Genome lists: Pathosystems Resource Integration Center lists: MSG lists: InsertionMapper lists: PubMed Central lists: GeneCommittee lists: INMEX lists: TagDust lists: PASS-bis lists: HLASeq lists: FIDEA lists: EGAPP lists: DCTD lists: Hapmix lists: BamView lists: PerM lists: Mercury lists: CDP lists: CB-Commander lists: BSRD lists: DER Finder lists: Artemis: Genome Browser and Annotation Tool lists: PeaKDEck lists: PubChem lists: Babel lists: bcbio-nextgen lists: SIDER lists: EpiGRAPH lists: DRUT lists: Ancestrymap lists: VIROME lists: Vanator lists: FACIL lists: Velvet-SC lists: SNiPer-HD lists: Squeezambler lists: UniGene lists: SCPD - Saccharomyces cerevisiae promoter database lists: GASSST lists: SnoopCGH lists: Taverna lists: PASHA lists: miRDeepFinder lists: STAR lists: Spanki lists: VAMPS lists: Basic OligoNucleotide Design lists: Tree and reticulogram REConstruction lists: ACT: Artemis Comparison Tool lists: SPInDel lists: Kdetrees lists: tree editor lists: Genomedata lists: BioDiscovery Nexus Copy Number lists: TETRA lists: MetaCluster-TA lists: DELLY lists: QuickGO lists: TAIR lists: CompostBin lists: Nonpareil lists: BioPig lists: LMAT lists: AbundanceBin lists: TaxSOM lists: NuChart lists: ProViDE lists: UnifiedGenotyper lists: SOrt-ITEMS lists: RAIphy lists: Human DNA Polymerase Gamma Mutation Database lists: Pfam lists: Distributed String Mining Framework lists: Pplacer lists: deStruct lists: Phymm and PhymmBL lists: USeq lists: NucPosSimulator lists: NBC lists: SVMerge lists: MLTreeMap lists: SVseq lists: SEQanswers lists: PRISM - Pair Read Informed Split Mapper lists: miRNAKey lists: MG-RAST lists: Information Hyperlinked Over Proteins lists: PubMed lists: MetaPhyler lists: MARTA lists: NCBI BioSample lists: BioSample Database at EBI lists: DiScRIBinATE lists: VariationHunter lists: NCBI BLAST lists: IBIS: Inferred Biomolecular Interactions Server lists: NCBI Sequence Read Archive (SRA) lists: MetaPhlAn lists: Classifier for Metagenomic Sequences lists: MapAl lists: European Genome phenome Archive lists: TemplateFilter lists: Minia lists: MiTCR lists: M-pick lists: CARMA lists: SLIQ lists: DNAPlotter lists: AmphoraNet lists: UPARSE lists: SOPRA lists: ESPRIT-Tree lists: HPC-CLUST lists: mirWIP lists: SSPACE lists: GoMapMan lists: G-BLASTN lists: SINA lists: Bambus lists: AGORA lists: GRASS lists: MIP Scaffolder lists: Scarpa lists: MBCluster.Seq lists: cortex var lists: Flux Simulator lists: BEERS lists: SNPeffect lists: MMAPPR lists: Cloudbreak lists: comrad lists: qSNP lists: SomaticIndelDetector lists: SomaticSniper lists: aldex lists: UnoSeq lists: Traph lists: RNA-SeQC lists: PoPoolation TE lists: RetroSeq lists: T-lex lists: SLIDE lists: VFS lists: Project HOPE lists: PANTHER Evolutionary analysis of coding SNPs lists: rQuant lists: Naturejobs lists: jobs.ac.uk lists: ASOoViR lists: RNA-eXpress lists: MethPipe lists: AnnTools lists: AVIA lists: CandiSNPer lists: CHAoS lists: COVA lists: methylKit lists: dbNSFP lists: GESND lists: VAGrENT lists: Human Splicing Finder lists: NGS-SNP lists: Oncotator lists: PHAge Search Tool lists: SCAN lists: SeqAnt lists: SNPdat lists: ORMAN lists: FRCbam lists: SNPdbe lists: SnpEff lists: SNPnexus lists: SPOT - Biological prioritization after a SNP association study lists: VARIANT lists: ABSOLUTE lists: ExPANdS lists: HIVCD lists: PathSeq lists: READSCAN lists: VirusFinder lists: VirusSeq lists: PredictHaplo lists: QuRe lists: ShoRAH lists: V-Phaser 2 lists: NSMAP lists: FlowSim lists: SimRare lists: SAMtools/BCFtools lists: MiTie lists: GeneTalk lists: iReckon lists: Genomic Datasharing lists: IsoformEx lists: IQSeq lists: ERANGE lists: FusionMap lists: Bioinformatics(at)school lists: PhenoMan lists: Models of SHM Targeting and Substitution lists: AGE lists: Breakpointer lists: CLEVER Toolkit lists: Clippers lists: CREST lists: Indelocator lists: GASVPro lists: Hydra lists: inGAP lists: VelociMapper lists: PEMer lists: SPLITREAD lists: SpliceSeq lists: Scripture lists: Omicsoft Sequence Aligner lists: SOAPindel lists: G-Mo.R-Se lists: SEECER lists: RSeQC lists: SeqWare lists: CloVR lists: PolySearch lists: MiRPara lists: PIE the search lists: miRdSNP lists: Hmmer lists: MuGeX lists: SysCall lists: KGGSeq lists: MycoCosm lists: EBIMed lists: HighWire lists: Coremine Medical lists: Assembly Likelihood Estimator lists: CoPub lists: ABS filter lists: NCBO Annotator lists: CHANCE lists: phantompeakqualtools lists: CoIN lists: SwissRegulon lists: becas lists: GEM lists: Anne O'Tate lists: (at)Note lists: PeakSeq lists: FaBox lists: CoverageCalculator lists: Spliceman lists: Yabi lists: footprintDB lists: MolBioLib lists: Moa lists: PRISM (Stanford database) lists: Knime4Bio lists: Ergatis lists: bioKepler lists: Platypus lists: PING lists: Binding and 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Neuroscience Information Framework lists: ArrayExpress lists: SGD lists: SEQanswers Wiki lists: SMD lists: GOSlimViewer lists: OntoVisT lists: STRAP lists: GoFish lists: GOProfiler lists: FuncAssociate: The Gene Set Functionator lists: UCSC Genome Browser lists: UniPROBE lists: GREAT: Genomic Regions Enrichment of Annotations Tool lists: Whatizit lists: REViGO lists: Blast2GO lists: InterProScan lists: DiseaseMeth lists: caArray lists: NCBI Epigenomics lists: OMIM lists: Mouse Genome Informatics (MGI) lists: European Nucleotide Archive (ENA) lists: FlyBase lists: Ontology Lookup Service lists: MaizeGDB lists: Dictyostelium discoideum genome database lists: InterPro lists: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit lists: GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool lists: RamiGO lists: GeneCodis lists: IntAct lists: agriGO lists: GOblet lists: Gene Expression Omnibus lists: Biological General Repository for Interaction Datasets (BioGRID) lists: Ingenuity Pathway Analysis lists: Roadmap Epigenomics Project lists: PEER lists: KEGG lists: Antibodypedia lists: AcroMine lists: g:Profiler lists: HighWire Press lists: Biometric Research Branch: ArrayTools lists: R Project for Statistical Computing lists: Nu-OSCAR lists: Pedigree-Draw lists: Community Cyberinfrastructure for Advanced Marine Microbial Ecology Research and Analysis lists: ChIP-Atlas lists: ProLinks Database of Functional Linkages lists: Myrna lists: lilikoi lists: GOTrack lists: Ximmer lists: NAT/NCS2 Hound lists: VoxBlast lists: Splicing Express lists: RNA22 lists: miRWalk lists: miRmap lists: AbundantOTU+ lists: MutaGene lists: VecScreen lists: NMRProcFlow lists: Attie Lab Diabetes Database lists: Agilent MassHunter WorkStation - Qualitative Analysis for GC/MS lists: XYalign lists: fermi lists: metaPocket lists: DoG picker lists: TiltPicker lists: NeuroAnatomy Toolbox lists: MAxEntScan lists: MetaNeighbor lists: OmicsNet lists: Discovar assembler lists: Supernova assembler lists: Epik lists: Ligprep lists: PathwayMatcher lists: EMAN lists: Geno2MP lists: duphold lists: ConsensusClusterPlus lists: EpiFactors lists: fastp lists: NanoFilt lists: Heatmapper lists: Nuclear Hormone Receptor Scan lists: Metacell lists: OmicsSIMLA lists: ScaffMatch lists: MITE-Tracker lists: PCAGO lists: BinPacker lists: Bridger lists: RaceID lists: PRSice lists: cwl-metrics lists: mzStudio lists: OrthoFinder lists: SwiftOrtho lists: ClustVis lists: CWL-Airflow lists: CytExpert Software lists: Computational Suite for Bioinformaticians and Biologists lists: WTDBG lists: prank lists: MACS lists: NeuroAnatomy Toolbox lists: CentroidFold lists: pKiss lists: BIDS Validator lists: PILER lists: trimAl lists: NOVOPlasty lists: GeSeq lists: Diffusion Toolkit lists: PathwayNet lists: miRTarBase lists: CLC Genomics Workbench lists: PyNWB lists: FastProject lists: DiseaseMeth lists: WormAtlas lists: GeneATLAS lists: immuneXpresso lists: BioAssay Express lists: ChemRICH lists: TransDecoder lists: GADMA lists: Alien-hunter lists: ALTER lists: AMAP lists: Anfo lists: Aragorn lists: Arden lists: Ariba lists: Augustus lists: Avogadro lists: Axe lists: Baitfisher lists: BALLView lists: Bamtools lists: Barrnap lists: BEAST lists: BioPerl lists: bioSyntax lists: Bio-tradis lists: BOXSHADE 3.21 lists: Canu lists: Cassiopee lists: Cdbfasta lists: CD-HIT lists: Circlator lists: Clearcut lists: Clonalframe lists: ClonalOrigin lists: Clustal W2 lists: COILS: Prediction of Coiled Coil Regions in Proteins lists: Concavity lists: Cufflinks lists: cwltool lists: DIAMOND lists: DISULFIND lists: Database of Secondary Structure Assignments lists: Eigensoft lists: EMBOSS lists: ESTScan lists: FASTLINK lists: FastQC lists: FastTree lists: FigTree lists: Fsm-lite lists: Gamgi lists: Genome BioInformatics Research Lab - gff2ps lists: Ghemical lists: GIIRA lists: GROMACS lists: Gwyddion lists: Bioinformatics Toolkit lists: PyMOL lists: Biopython lists: PRESTO: Genetic Association Analysis Software lists: CummeRbund lists: ProtTest lists: Prokka lists: Computational Structural Biology Toolbox lists: LEfSe lists: jModelTest lists: khmer lists: Atac lists: LAMARC lists: FreeContact lists: libRoadRunner lists: TFBS lists: MicrobiomeUtilities lists: MINIMAC lists: MultiQC lists: Nanopolish lists: IgBLAST lists: PHYLIP lists: PhyML lists: Pilon lists: ADEGENET lists: phytools lists: R/QTL lists: RDKit: Open-Source Cheminformatics Software lists: RepeatMasker lists: SeaView lists: SEER lists: Seq-Gen lists: StringTie lists: THESIAS lists: Transterm lists: Vascular Modeling Toolkit lists: Aegean lists: andi lists: Bandage lists: Eagle lists: BioJava Project lists: Bio++ lists: BRAKER lists: Bustools lists: Centrifuge Classifier lists: ChromHMM lists: DeepNano lists: Ecopcr lists: Edtsurf lists: E-mem lists: Examl lists: Falcon lists: Fastaq lists: Fastml lists: Fastqtl lists: FSA lists: GARLI lists: Garlic lists: gdpc lists: GenomeTools lists: Gentle lists: Gff2aplot lists: gffread lists: GraPhlAn lists: Gubbins lists: Harvest-tools lists: HiLive lists: Hinge lists: HyPhy lists: Indelible lists: IQ TREE lists: Fastahack lists: Mash lists: MEGAHIT lists: Minimap2 lists: mosdepth lists: MUMmer lists: OptiType lists: Phyutility lists: Porechop lists: QIIME2 lists: Racon lists: Phangorn lists: pheatmap lists: Recognition of Errors in Assemblies using Paired Reads lists: RELION lists: Roary lists: Salmon lists: Scoary lists: University of Zurich SCRM - Cell-and Tissue Biobank lists: Seqtk lists: Short Read Sequence Typing for Bacterial Pathogens lists: Vmatch lists: ABACAS lists: AceDB lists: tRNAscan-SE lists: Antibody Resource Page is related to: COnsensus-DEgenerate Hybride Oligonucleotide Primers is related to: Classifier for Metagenomic Sequences is related to: Pedigree-Draw is related to: CAZy- Carbohydrate Active Enzyme is related to: PolyPhen: Polymorphism Phenotyping is related to: BioRAT is related to: dChip Software is related to: Rat Genome Database (RGD) is related to: Comparative Toxicogenomics Database (CTD) is related to: VISTA Enhancer Browser is related to: affy			PMID:25024350	THIS RESOURCE IS NO LONGER IN SERVICE	nlx_155571, r3d100012426	https://doi.org/10.17616/R3PJ3N	http://omictools.com/	SCR_002250	genOMIC tools	2026-08-21 12:36:40	34
MIAME Resource Report Resource Website 100+ mentions	MIAME (RRID:SCR_002349)	MIAME	data or information resource, narrative resource, standard specification	Standard specification for the Minimum Information About a Microarray Experiment that is needed to enable the interpretation of the results of the experiment unambiguously and potentially to reproduce the experiment.	microarray, gene expression, MDAR, FASEB list	is used by: ArrayExpress is used by: Gene Expression Omnibus is used by: GeneLab is listed by: OMICtools is related to: BarleyBase is related to: ArrayExpress is related to: RNA Abundance Database is related to: MAGE-TAB is related to: MGED Ontology is related to: TM4 is related to: DDBJ Omics Archive is related to: Gene Expression Omnibus is related to: CIBEX: Center for Information Biology gene EXpression database is related to: MGED Ontology is related to: MicroArray and Gene Expression Markup Language has parent organization: European Bioinformatics Institute has parent organization: FGED			PMID:11726920		OMICS_01785		http://www.mged.org/Workgroups/MIAME/miame.html	SCR_002349	Minimum Information About a Microarray Experiment	2026-08-21 12:36:42	280
MAGE-TAB Resource Report Resource Website 1+ mentions	MAGE-TAB (RRID:SCR_003222)	MAGE-TAB	data or information resource, narrative resource, standard specification	THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 27,2023. A simple tab-delimited, spreadsheet-based format which will become a part of the MAGE microarray data standard that can be used for annotating and communicating microarray data in a MIAME compliant fashion. MAGE-TAB will enable laboratories without bioinformatics experience or support to manage, exchange and submit well-annotated microarray data in a standard format using a spreadsheet. The MAGE-TAB format is self-contained, and does not require an understanding of MAGE-ML or XML.	microarray, bio.tools	is listed by: bio.tools is listed by: Debian is related to: MIAME is related to: DDBJ Omics Archive is related to: ArrayExpress is related to: caArray has parent organization: MAGE			PMID:17087822	THIS RESOURCE IS NO LONGER IN SERVICE	nlx_157259, biotools:tab2mage	https://bio.tools/tab2mage		SCR_003222		2026-08-21 12:37:03	5
MINSEQE Resource Report Resource Website 10+ mentions	MINSEQE (RRID:SCR_003221)	MINSEQE	data or information resource, narrative resource, standard specification	The Minimum Information about a high-throughput nucleotide SEQuencing Experiment that is needed to enable the unambiguous interpretation and facilitate reproduction of the results of the experiment. By analogy to the MIAME guidelines for microarray experiments, adherence to the MINSEQE guidelines will improve integration of multiple experiments across different modalities, thereby maximising the value of high-throughput research. The five elements of experimental description considered essential when making data available supporting published high-throughput sequencing experiments are as follows: # The description of the biological system, samples, and the experimental variables being studied # The sequence read data for each assay # The "final" processed (or summary) data for the set of assays in the study # General information about the experiment and sample-data relationships # Essential experimental and data processing protocols	high-throughput sequencing	is used by: ArrayExpress is related to: DDBJ Omics Archive has parent organization: FGED					nlx_157258			SCR_003221	Minimum Information about a high-throughput SEQuencing Experiment	2026-08-21 12:36:56	11
DataCite Resource Report Resource Website 50+ mentions	DataCite (RRID:SCR_004139)		nonprofit organization	Platform for storing, finding and accessing data that provides a service for data centres to mint DOIs and store associated metadata. Their goals are to establish easier access to scientific research data on the Internet, increase acceptance of research data as legitimate, citable contributions to the scientific record and support data archiving that will permit results to be verified and re-purposed for future study. DataCite is global, with member institutions offering services and advice directly where they are needed by the researchers. While datasets are shared and accessed globally, researchers work within national funding and organizational frameworks. It therefore operates globally, with national representation. The DataCite Metadata Scheme is a list of core metadata properties chosen for the accurate and consistent identification of data for citation and retrieval purposes, along with recommended use instructions.	data citation, data archiving	is used by: California Digital Library is used by: Office of Scientific and Technical Information is used by: BGI; Shenzhen; China is used by: ETH Zurich; Zurich; Switzerland is used by: French National Center for Scientific Research is used by: Inter-university Consortium for Political and Social Research (ICPSR) is used by: University of Tartu; Tartu; Estonia is used by: Open Data Commons for Traumatic Brain Injury is used by: SPARC Portal is used by: Pacific Northwest National Laboratory DataHub: Scientific Data Repository is used by: COVID-19 Data Repository is used by: NIDDK Central Repository is used by: Marine Geoscience Data System is used by: National Addiction and HIV Data Archive Program (NAHDAP) is used by: Coherent X-Ray Imaging Data Bank (CXIDB) lists: Biological Magnetic Resonance Data Bank (BMRB) lists: ArrayExpress lists: GigaDB lists: Atlantic Canada Conservation Data Centre lists: Agri-environmental Research Data Repository lists: Australian Antarctic Data Centre lists: TARDIS lists: BioModels lists: Addgene lists: BOLD lists: FigShare lists: Standards-based Infrastructure with Distributed Resources lists: TAIR lists: Biomedical Informatics Research Network lists: 4TU.Datacentrum lists: Amazon Web Services Public Data Sets lists: Atlas of Living Australia lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database lists: Biological General Repository for Interaction Datasets (BioGRID) lists: Africa Centre for Health and Population Studies lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) lists: STRENDA lists: Brain Image Library lists: CaltechDATA lists: Code Ocean lists: CoMSES Net lists: DataONE lists: DANS lists: GBIF - Global Biodiversity Information Facility lists: German Collection of Microorganisms and Cell Cultures lists: Distributed Archives for Neurophysiology Data Integration lists: INPTDAT lists: Mendeley Data lists: Lamont-Doherty Core Repository lists: MorphoBank lists: Incorporated Research Institutions for Seismology lists: PhysioNet lists: Open Science Framework lists: Simtk.org lists: Synapse lists: OpenNeuro lists: Vivli lists: Cancer Imaging Archive (TCIA) lists: UK Data Archive lists: Dryad Digital Repository lists: Influenza Research Database (IRD) lists: ZENODO lists: National Snow and Ice Data Center lists: ResearchGate lists: Project Data Sphere lists: Qualitative Data Repository lists: Virus Pathogen Resource (ViPR) lists: Cambridge Structural Data Base lists: 4TU.ResearchData lists: Aperta Turkey Open Archive lists: Arch lists: Aston Data Explorer lists: Antarctic Meteorological Research and Data Center Repository lists: Polar Data Catalogue lists: Aston Publications Explorer lists: Astrobiology Habitable Environments Database lists: Australian Ocean Data Network lists: B2SHARE Eudat lists: Barbara A. Mikulski Archive for Space Telescopes lists: Australian Data Archive lists: BioHeritage National Science Challenge Data Repository lists: Abertay University Datasets lists: Birkbeck Research Data lists: BioData Management Portal lists: Bolin Centre Database lists: BRAIN Commons lists: SCAR Antarctic Biodiversity Portal lists: Brown Digital Repository lists: Canadian Polar Data Network lists: Berkeley Seismological Laboratory lists: Biocode Commons lists: DMPTool lists: California Digital Library lists: eScholarship lists: Center for Research in Biological Systems lists: CCHDO lists: California Coastal Atlas lists: Comprehensive Everglades Restoration Plan lists: CRCNS lists: DataMares lists: Drug Design Data Resource lists: EarthCube lists: Geotechnical Extreme Events Reconnaissance lists: iDASH lists: Kavli Institute for Theoretical Physics Online Talks lists: EarthRef lists: Engineering Biology Research Consortium lists: Lawrence Berkeley National Laboratory lists: LBNL OpenMSI lists: National Center for Ecological Analysis and Synthesis lists: Nightingale Open Science lists: Marine and Coastal Research Institute of Columbia; Santa Marta; Colombia lists: Open Tree of Life lists: Open Data Commons for Spinal Cord Injury lists: Arctic Data Center lists: Ocean Protection Council lists: Open Context lists: Partnership for Interdisciplinary Studies of Coastal Oceans lists: Triton Shared Computing Cluster lists: OpenTopography lists: UC Berkeley Research IT lists: Center for Effective Global Action lists: SDSC Center for Applied Internet Data Analysis lists: Project Production Systems Laboratory lists: UC Davis eScholarship lists: UC Davis Social Science Data Service lists: University of California Press lists: UC Natural Reserve System lists: University of California at Riverside; California; USA lists: University of California at San Diego; California; USA lists: UC Medical Humanities Consortium lists: Coastal Data Information Program lists: UCSC Library lists: University of California at Santa Barbara; California; USA lists: University of California at Los Angeles; California; USA lists: Center for Computational Mass Spectrometry lists: Metabolomics Workbench lists: UCSD WIFIRE lists: UC Davis Library lists: Network Data Exchange (NDEx) is listed by: FORCE11 is affiliated with: RAiD is related to: Redivis is parent organization of: DataCite Ontology is parent organization of: ODIN				Public	grid.475826.a, nlx_16255, Wikidata: Q821542	https://ror.org/04wxnsj81		SCR_004139	datacite.org, Data Cite	2026-08-21 12:37:15	64
NIDDK Information Network (dkNET) Resource Report Resource Website 10+ mentions	NIDDK Information Network (dkNET) (RRID:SCR_001606)	dkNET	community building portal, data or information resource, database, portal	The NIDDK Information Network (dkNET) is a community-based network to serve needs of basic and clinical investigators that includes large pools of data and research resources relevant to mission of National Institute of Diabetes and Digestive and Kidney Disease.	dknet, data resource, diabetes, kidney, liver, disease, urology, hematology, digestive, nutrition, endocrine, obesity, metabolic	uses: NIDDK Central Repository uses: Addgene uses: NIF Data Federation uses: Antibody Registry uses: Nuclear Receptor Signaling Atlas uses: GenitoUrinary Development Molecular Anatomy Project uses: Diabetic Complications Consortium uses: National Mouse Metabolic Phenotyping Centers uses: T1DBase uses: Beta Cell Biology Consortium uses: Grants.gov uses: dkNET Community Pilot Funding Opportunities uses: Integrated Grants uses: ClinicalTrials.gov uses: Integrated Animals uses: Intestinal Stem Cell Consortium recommends: Biological General Repository for Interaction Datasets (BioGRID) recommends: Cell Image Library (CIL) recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) recommends: NIDDK Central Repository recommends: Network Data Exchange (NDEx) recommends: PeptideAtlas recommends: International Mouse Phenotyping Consortium (IMPC) recommends: FlyBase recommends: Metabolomics Workbench recommends: Zebrafish Information Network (ZFIN) recommends: Mouse Genome Informatics (MGI) recommends: Database of Interacting Proteins (DIP) recommends: UniProt recommends: PhysioNet recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) recommends: ClinicalTrials.gov recommends: dbVar recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL) recommends: WormBase recommends: dbSNP recommends: GenBank recommends: DNA DataBank of Japan (DDBJ) recommends: Database of Genomic Variants Archive (DGVa) recommends: NCBI Sequence Read Archive (SRA) recommends: MGnify recommends: European Variation Archive (EVA) recommends: European Nucleotide Archive (ENA) recommends: Gene Expression Omnibus (GEO) recommends: NCBI Assembly Archive Viewer recommends: Protein Circular Dichroism Data Bank (PCDDB) recommends: miRBase recommends: Trace Archive recommends: UniProtKB recommends: Coherent X-Ray Imaging Data Bank (CXIDB) recommends: Electron Microscopy Data Bank at PDBe (MSD-EBI) recommends: Worldwide Protein Data Bank (wwPDB) recommends: Biological Magnetic Resonance Data Bank (BMRB) recommends: Crystallography Open Database (COD) recommends: PDBj - Protein Data Bank Japan recommends: Inorganic Crystal Structure Database (ICSD) recommends: Structural Biology Grid recommends: NCBI database of Genotypes and Phenotypes (dbGap) recommends: ArrayExpress recommends: EMDataResource.org recommends: Cambridge Crystallographic Data Centre (CCDC) recommends: PDBe - Protein Data Bank in Europe recommends: Japanese Genotype-phenotype Archive (JGA) recommends: PubChem BioAssay recommends: European Genome phenome Archive recommends: GenomeRNAi recommends: ProteomeXchange recommends: MetaboLights recommends: IntAct recommends: FLOWRepository recommends: Proteomics Identifications (PRIDE) recommends: Global Proteome Machine Database (GPM DB) recommends: Kinetic Models of Biological Systems (KiMoSys) recommends: ChEMBL recommends: Cancer Imaging Archive (TCIA) recommends: Image Data Resource (IDR) recommends: The Immunology Database and Analysis Portal (ImmPort) recommends: PubChem Substance recommends: NeuroMorpho.Org recommends: Cancer Nanotechnology Laboratory (caNanoLab) recommends: SICAS Medical Image Repository recommends: Mass spectrometry Interactive Virtual Environment (MassIVE) recommends: Dryad Digital Repository recommends: ZENODO recommends: NIH Figshare Archive recommends: STRENDA recommends: OpenNeuro recommends: Influenza Research Database (IRD) recommends: 1000 Functional Connectomes Project recommends: Mendeley Data recommends: Open Science Framework recommends: Dataverse Network Project recommends: NIMH Data Archive recommends: FigShare recommends: National Addiction and HIV Data Archive Program (NAHDAP) recommends: SPARC Portal recommends: Vivli is recommended by: National Library of Medicine lists: Diabetic Complications Consortium lists: Nephromine lists: LIPID Metabolites And Pathways Strategy lists: METLIN lists: NIDDK Inflammatory Bowel Disease Genetics Consortium lists: Body Mass Index Calculator lists: Symptom Score for Benign Prostatic Hyperplasia lists: Genetics of Kidneys in Diabetes lists: Type 1 Diabetes - Rapid Access to Intervention Development lists: TEDDY lists: Trans-Institute Angiogenesis Research Program lists: Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease lists: Current Research Information System lists: Healthy People lists: Acute Liver Failure Study Group lists: Collaborative Islet Transplant Registry lists: Diabetes Prevention Type 1 lists: Epidemiology of Diabetes Interventions and Complications lists: NIH Division of Nutrition Research Coordination lists: Human Nutrition Research Information Management lists: Type 1 Diabetes Resource lists: National Diabetes Education Program lists: Pediatric Acute Liver Failure Study lists: Globin Gene Server lists: NIH Chronic Prostatitis Symptom Index lists: Sequencing of Idd regions in the NOD mouse genome lists: Look AHEAD lists: Teen-Longitudinal Assessment of Bariatric Surgery lists: Adult to Adult Living Donor Liver Transplantation Cohort Study lists: Behavior Enhances Drug Reduction of Incontinence lists: BARI 2D lists: Childhood Liver Disease Research and Education Network lists: Standardization of C-peptide measurements lists: CKID A Prospective Cohort Study of Kidney Disease in Children lists: Diabetes Prevention Program lists: Diabetes Prevention Program Outcomes Study lists: Irritable Bowel Syndrome Outcome Study lists: Folic Acid for Vascular Outcome Reduction in Transplantation lists: Type 1 Diabetes TrialNet lists: Diabetes Research in Children Network lists: Diabetic Retinopathy Clinical Research Network lists: Clinical Islet Transplantation Study lists: Nonalcoholic Steatohepatitis Clinical Research Network lists: Drug-Induced Liver Injury Network lists: Family Investigation of Nephropathy of Diabetes lists: Frequent Hemodialysis Network Daily Trial lists: HEALTHY study lists: SISTEr lists: Urinary Incontinence Treatment Network lists: TINSAL-T2D lists: TOMUS lists: Type 1 Diabetes Genetics Consortium lists: Center for Inherited Disease Research lists: Action to Control Cardiovascular Disease Risk in Diabetes Follow-up Study (ACCORDION) lists: Predicting Response to Standardized Pediatric Colitis Therapy (PROTECT) lists: Lifestyle Interventions for Expectant Moms (LIFE-Moms) lists: Hyperglycemia and Pregnancy Outcomes Follow-Up Study Consortium (HAPO-FUS) lists: Nephrotic Syndrome Study Network (NEPTUNE) lists: CKD Biomarkers Consortium lists: Porphyria Consortium lists: Vitamin D to Prevent Type 2 Diabetes (D2d) lists: Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) lists: Symptoms of Lower Urinary Tract Dysfunction Research Network (LURN) lists: Clinical Islet Transplantation Consortium (CITC) lists: Restoring Insulin Secretion Consortium (RISE) lists: Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI) lists: Integrated Islet Distribution Program (IIDP) lists: Human Islet Research Network (HIRN) lists: Rare Kidney Stone Consortium (RKSC) lists: Evaluating Predictors and Interventions in Sphincter of Oddi Dysfunction lists: Efficacy and Mechanisms of Glutamine Dipeptide in the Surgical Intensive Care Unit lists: Intestinal Stem Cell Consortium lists: RiVuR lists: Gastroparesis Clinical Research Consortium lists: Urologic Diseases in America lists: United States Renal Data System lists: HALT PKD lists: Chronic Renal Insufficiency Cohort Study lists: Viral Resistance to Antiviral Therapy of Chronic Hepatitis C lists: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C lists: HALT-C Trial lists: TRIGR lists: Treatment Options for type 2 Diabetes in Adolescents and Youth lists: Study of Nutrition in Acute Pancreatitis lists: SEARCH for Diabetes in Youth lists: Organ Procurement and Transplantation Network lists: Nuclear Receptor Signaling Atlas lists: NIH Common Fund lists: Mutant Mouse Resource and Research Center lists: GenitoUrinary Development Molecular Anatomy Project lists: National Mouse Metabolic Phenotyping Centers lists: IPD-MHC- Major Histocompatibility Complex lists: High-dose Ursodiol Therapy of Primary Sclerosing Cholangitis lists: Hepatitis B Research Network lists: Functional Dyspepsia Treatment Trial lists: Cooperative Study Group for Autoimmune Disease Prevention lists: Clinical Outcomes Research Initiative lists: BISC lists: Beta Cell Biology Consortium lists: Autoimmunity Centers of Excellence lists: HemBase lists: Longitudinal Assessment of Bariatric Surgery lists: Minnesota Liver Tissue Cell Distribution System lists: Knockout Mouse Project lists: Immune Tolerance Network (ITN) lists: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) lists: ReBuilding a Kidney lists: GOA lists: NURSA Transcriptomine lists: STRING lists: Nuclear Receptor Cistrome lists: EuReGene lists: Embryo Images Normal and Abnormal Mammalian Development lists: Stem Cell Genome Anatomy Projects lists: Eurexpress lists: Gene Expression Database lists: ToppGene Suite lists: GATACA GUDMAP Gene Explorer lists: Knockout Mouse Project Repository lists: Cornell Heart Lung Blood Resource for Optogenetic Mouse Signaling (CHROMus) lists: International Mouse Phenotyping Consortium (IMPC) lists: Juvenile Diabetes Research Foundation lists: NIDDK Central Repository lists: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB) lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) lists: T1DBase lists: NCI Specimen Resource Locator lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: caHUB lists: T1D Exchange lists: NCBI lists: LANDMark BioBanks lists: Diabetes Research Centers lists: Network for Pancreatic Organ Donors with Diabetes lists: Nutrition and Obesity Research Centers lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Antibody Validation and Vector Core lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Cell Culture and Engineering lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Clinical and Translational Core Resource lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Mouse Models and Biobank lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Bioinformatics Resource lists: Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology Core Facility lists: Boston Area Diabetes Endocrinology Research Center Metabolic Physiology and Energy Balance Core Facility lists: Boston Area Diabetes Endocrinology Research Center Molecular Biology lists: Boston Area Diabetes Endocrinology Research Center Pancreatic Islet lists: Boston Area Diabetes Endocrinology Research Center lists: Boston Area Diabetes Endocrinology Research Center Transgenic lists: Boston Children's Hospital Center of Excellence in Molecular Hematology Mouse Embryonic Stem(ES) Cell and Gene Targeting Core lists: Boston Children's Hospital Center of Excellence in Molecular Hematology lists: Boston Children's Hospital Center of Excellence in Molecular Hematology Stem Cell Engineering and Analysis Core lists: Boston Children's Hospital Center of Excellence in Molecular Hematology Zebrafish Core lists: Boston Nutrition and Obesity Research Centers Adipose Biology and Nutrient Metabolism Core lists: Boston Nutrition and Obesity Research Centers Administrative Core lists: Boston Nutrition and Obesity Research Centers Epidemiology and Genetics Core lists: Boston Nutrition and Obesity Research Centers Functional Genomics and Bioinformatics Core lists: Boston Nutrition and Obesity Research Centers lists: Boston Nutrition and Obesity Research Centers Transgenic Core lists: Center for American Indian and Alaska Native Diabetes Translational Research Administrative Core lists: Center for American Indian and Alaska Native Diabetes Translational Research National Resource lists: Center for American Indian and Alaska Native Diabetes Translational Research Resource lists: Center for American Indian and Alaska Native Diabetes Translational Research lists: Center for Iron and Heme Disorders at the University of Utah Administrative Core lists: Center for Iron and Heme Disorders at the University of Utah Iron and Heme Core lists: Center for Iron and Heme Disorders at the University of Utah Metabolomics Core lists: Center for Iron and Heme Disorders at the University of Utah Mutation Generation and Detection Core lists: Center for Iron and Heme Disorders at the University of Utah lists: Center for the Study of Inflammatory Bowel Disease Clinical Core lists: Center for the Study of Inflammatory Bowel Disease Genetic Animal Models Core lists: Center for the Study of Inflammatory Bowel Disease Genetics Genomics and Molecular Biology Core lists: Center for the Study of Inflammatory Bowel Disease Immunology Core lists: Center for the Study of Inflammatory Bowel Disease Morphology Core lists: Center for the Study of Inflammatory Bowel Disease lists: Centers for Diabetes Translation Research lists: Chicago Center for Diabetes Translation Research Health Disparities and Community-Based Participatory Research Core lists: Chicago Center for Diabetes Translation Research Outcomes Improvement Core lists: Chicago Center for Diabetes Translation Research Quantitative Analysis Core lists: Chicago Center for Diabetes Translation Research lists: Cincinnati Digestive Health Center Clinical Component-Data Analysis and Management lists: Cincinnati Children's Hospital Digestive Health Center lists: Cincinnati Digestive Health Center Integrative Morphology lists: Cincinnati Digestive Health Center Pluripotent Stem Cell and Organoid Core lists: Cincinnati Digestive Health Center lists: Cleveland Digestive Diseases Research Core Center lists: Cleveland Digestive Diseases Research Core Facilities lists: Columbia Diabetes Research Center Advanced Tissue Pathology and Imaging Core Facility lists: Columbia Diabetes Research Center Flow Cytometry and Cell Sorting Core Facility lists: Columbia Diabetes Research Center Mouse Metabolic Function and Phenotyping Core Facility lists: Columbia Diabetes Research Center lists: Columbia Diabetes Research Center Translational Biomarker Analytical Core Facility lists: Columbia University George M. O'Brien Urology Center lists: CURE - Digestive Diseases Research Center Administrative Core lists: CURE - Digestive Diseases Research Center Animal Models Core lists: CURE - Digestive Diseases Research Center Human Studies Core lists: CURE - Digestive Diseases Research Center Molecular Biology and Peptidomics Core lists: CURE - Digestive Diseases Research Center Morphology and Imaging Core lists: CURE - Digestive Diseases Research Center lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Clinical Translational Core lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Histology Core lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Michael Hooker Microscopy Core Facility lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Molecular Biology Core lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Mouse Models Core lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Mucus and Mucin Biochemistry and Biophysics Core lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Pre-Clinical Core lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center lists: Cystic Fibrosis and Pulmonary Diseases Research and Treatment Center Tissue Procurement and Cell Culture Core lists: Cystic Fibrosis Center - University of California San Francisco lists: Cystic Fibrosis Center University of Pittsburgh lists: Cystic Fibrosis Center - University of Washington Administrative and Enrichment Core lists: Cystic Fibrosis Center - University of Washington Clinical Core lists: University of Washington Genomics Core Cystic Fibrosis Research Translation Center and Research Development Program lists: Cystic Fibrosis Center - University of Washington Host Response Core lists: Cystic Fibrosis Center - University of Washington Microbiology Core lists: Cystic Fibrosis Center - University of Washington lists: Cystic Fibrosis Research and Translation Centers lists: Digestive Disease Centers lists: Duke O'Brien Center for Kidney Research Animal Models Core lists: Duke O'Brien Center for Kidney Research Clinical and Translational Core lists: Duke O'Brien Center for Kidney Research Renal Genomics Core lists: Duke O'Brien Center for Kidney Research lists: Einstein-Mount Sinai Diabetes Research Center Animal Physiology Core Facility lists: Einstein-Mount Sinai Diabetes Research Center Biomarker Analytic Research Core Facility lists: Einstein-Mount Sinai Diabetes Research Center Human Islet and Adenovirus Core Facility lists: Einstein-Mount Sinai Diabetes Research Center lists: Einstein-Mount Sinai Diabetes Research Center Stable Isotope and Metabolomics Core Facility lists: Einstein-Mount Sinai Diabetes Research Center Translational Research Core Facility lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Antibody Technology lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Arnold Library lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Comparative Medicine lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Electron Microscopy lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Experimental Histopathology Shared Resource lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Flow Cytometry lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Genomics Shared Resource lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Glassware Services lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Proteomics Resource lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Research Freezers and Sample Storage Resource lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Scientific Imaging lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Specimen Processing/Research Cell Bank lists: George M. O'Brien Kidney Center at Yale Human Genetics and Clinical Research Core lists: George M. O'Brien Kidney Center at Yale Mouse Genetics and Cell Line Core lists: George M. O'Brien Kidney Center at Yale Renal Physiology Core lists: George M. O'Brien Kidney Center at Yale lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Animal Models Core lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Cell Biology and Imaging Core lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Clinical and Translational Core lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center Physiology Core lists: George M. O'Brien Kidney Research Core Center - UT Southwestern Medical Center lists: Georgia Center for Diabetes Translation Research Design and Evaluation Core Facility lists: Georgia Center for Diabetes Translation Research Disparities Core lists: Georgia Center for Diabetes Translation Research Engagement and Behavior Change Core lists: Georgia Center for Diabetes Translation Research lists: Gregory Fleming James Cystic Fibrosis Research Center Assay Core lists: Gregory Fleming James Cystic Fibrosis Research Center Cell Model and Evaluation Core lists: Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Animal Models Core lists: Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Clinical and Translational Core lists: Gregory Fleming James Cystic Fibrosis Research Center Cystic Fibrosis Transmembrane Conductance Regulator Expression Core lists: Gregory Fleming James Cystic Fibrosis Research Center lists: Health Delivery Systems Center for Diabetes Translational Research California State Resource Program lists: Health Delivery Systems Center for Diabetes Translational Research Diabetes and Obesity Prevention Core lists: Health Delivery Systems Center for Diabetes Translational Research Health Disparities Core lists: Health Delivery Systems Center for Diabetes Translational Research Health Information Technology Core lists: Health Delivery Systems Center for Diabetes Translational Research lists: Hematology Centers lists: Indiana University School of Medicine Center for Diabetes and Metabolic Diseases Islet and Physiology Core Facility lists: Indiana Diabetes Research Center Microscopy Core Facility lists: Indiana Diabetes Research Center lists: Indiana Diabetes Research Center Swine Core lists: Indiana Diabetes Research Center Translation Core Facility lists: Indiana O'Brien Center for Advanced Microscopic Analysis Administration Core lists: Indiana O'Brien Center for Advanced Microscopic Analysis Biosensor Development Core lists: Indiana O'Brien Center for Advanced Microscopic Analysis Digital Image Analysis Core lists: Indiana O'Brien Center for Advanced Microscopic Analysis Education Core lists: Indiana O'Brien Center for Advanced Microscopic Analysis Intravital Microscopy Core lists: Indiana O'Brien Center for Advanced Microscopic Analysis Probe Delivery Core lists: Indiana O'Brien Center for Advanced Microscopic Analysis lists: Indiana University Cooperative Center of Excellence in Hematology Angiogenesis Core lists: Indiana University Cooperative Center of Excellence in Hematology Experimental Mouse Resources Core lists: Indiana University School of Medicine Flow Cytometry Core Facility lists: Indiana University Cooperative Center of Excellence in Hematology Optical Microscopy Core lists: Indiana University Cooperative Center of Excellence in Hematology lists: Johns Hopkins University - University of Maryland Diabetes Research Center Administrative Core lists: Johns Hopkins University - University of Maryland Diabetes Research Center Cell Biology Core lists: Johns Hopkins University - University of Maryland Diabetes Research Center Gene Editing Core lists: Johns Hopkins University - University of Maryland Diabetes Research Center Health and Populations Science Core lists: Johns Hopkins University - University of Maryland Diabetes Research Center Integrated Physiology Core lists: Johns Hopkins University - University of Maryland Diabetes Research Center Molecular and Translational Genomics Core lists: Johns Hopkins University - University of Maryland Diabetes Research Center lists: Joslin Diabetes Center Advanced Genomics and Genetics Core Facility lists: Joslin Diabetes Center Advanced Microscopy Core Facility lists: Joslin Diabetes Center Animal Physiology Core Facility lists: Joslin Diabetes Center Bioinformatics and Biostatistics Core lists: Joslin Diabetes Center Enrichment Core lists: Joslin Diabetes Center Flow Cytometry Core Facility lists: Joslin Diabetes Center Induced Pluripotent Stem Cell Core lists: Joslin Diabetes Center lists: Marion Bessin Liver Research Center Animal Models Stem Cells and Cell Therapy lists: Marion Bessin Liver Research Center Genetic Engineering and Gene Therapy lists: Marion Bessin Liver Research Center Imaging and Cell Structure lists: Marion Bessin Liver Research Center lists: Mayo Clinic Center for Cell Signaling in Gastroenterology Clinical Core lists: Mayo Clinic Center for Cell Signaling in Gastroenterology Gene Editing and Cell Engineering Core lists: Mayo Clinic Center for Cell Signaling in Gastroenterology Optical Microscopy Core lists: Mayo Clinic Center for Cell Signaling in Gastroenterology lists: Mayo Clinic O'Brien Urology Center Biostatistics and Epidemiology Core lists: Mayo Clinic O'Brien Urology Center Imaging Core lists: Mayo Clinic O'Brien Urology Center lists: Mayo Clinic O'Brien Urology Center Urine Phenotyping Core lists: Michigan Center for Diabetes Translational Research Administrative Core Facility lists: Michigan Center for Diabetes Translational Research Intervention and Technology Research Core lists: Michigan Center for Diabetes Translational Research Leveraging Community, Peer, and Family Support Core Facility lists: Michigan Center for Diabetes Translational Research Methods and Measurements Core lists: Michigan Diabetes Research Center Animal Studies Core lists: Michigan Diabetes Research Center Clinical Core Facility lists: Michigan Diabetes Research Center Microscopy and Image Analysis Core Facility lists: Michigan Diabetes Research Center Molecular Genetics Core Facility lists: Michigan Diabetes Research Center OMICS Core lists: Michigan Diabetes Research Center lists: Mid-Atlantic Nutrition Obesity Research Center Biological Mechanisms and Functional Genomics Core lists: Mid-Atlantic Nutrition Obesity Research Center Biostatistics and Medical Informatics Subcore lists: Mid-Atlantic Nutrition Obesity Research Center Clinical and Translational Research Core lists: Mid-Atlantic Nutrition Obesity Research Center Molecular Genetics and Nutrigenomics Core lists: Mid-Atlantic Nutrition Obesity Research Center lists: MMPC-University of California Davis Administrative Core lists: MMPC-University of California Davis Animal Care Surgery and Pathology Core lists: MMPC-University of California Davis Endocrinology and Metabolism Core lists: MMPC-University of California Davis Energy Balance Exercise and Behavior Core lists: MMPC-University of California Davis Microbiome and Host Response Core lists: MMPC-University of California Davis lists: MMPC-University of Cincinnati Medical Center Cardiovascular and Renal Function Core lists: MMPC-University of Cincinnati Medical Center Energy Metabolism Food Intake and Body Weight Regulation Core lists: MMPC-University of Cincinnati Medical Center Lipid Lipoprotein and Glucose Metabolism Core lists: MMPC-University of Cincinnati Medical Center lists: MMPC-University of Massachusetts Medical School Analytical Core lists: MMPC-University of Massachusetts Medical School Animal Care Core lists: MMPC-University of Massachusetts Medical School Cardiovascular Core lists: MMPC-University of Massachusetts Medical School Humanized Mouse Cell Transplantation and Assessment Core lists: MMPC-University of Massachusetts Medical School Islet Core lists: MMPC-University of Massachusetts Medical School Metabolism Core lists: University of Massachusetts Medical School Metabolic Disease Research Center Core Facility lists: MMPC-University of Michigan Medical School Animal Care and Germ-Free Mouse Core lists: MMPC-University of Michigan Medical School Metabolism Bariatric Surgery and Behavior Core lists: MMPC-University of Michigan Medical School Microbiome Core lists: MMPC-University of Michigan Medical School Microvascular Complications Core lists: MMPC-University of Michigan Medical School lists: MMPC-Vanderbilt University School of Medicine Analytical Resources Core lists: MMPC-Vanderbilt University School of Medicine Animal Health and Welfare Core lists: MMPC-Vanderbilt University School of Medicine Cardiovascular Pathophysiology Core lists: MMPC-Vanderbilt University School of Medicine Metabolic Regulation Core lists: MMPC-Vanderbilt University School of Medicine lists: Molecular Biology and Next Generation Technology lists: Mucosal HIV and Immunobiology Center Genetically-Defined Microbe Core lists: Mucosal HIV and Immunobiology Center Gnotobiotic and Genetically-Engineered Mouse Core lists: Mucosal HIV and Immunobiology Center Molecular Pathology and Human Cell and Tissue Core lists: Mucosal HIV and Immunobiology Center lists: New York Obesity Nutrition Research Center Animal Phenotyping Core lists: New York Obesity Nutrition Research Center Human Phenotyping Core lists: New York Obesity Nutrition Research Center lists: New York Regional Center for Diabetes Translation Research Latino Network for Diabetes Translational Research lists: New York Regional Center for Diabetes Translation Research Life Course Methodology Core lists: New York Regional Center for Diabetes Translation Research Population Health and Health Systems Core lists: New York Regional Center for Diabetes Translation Research lists: New York Regional Center for Diabetes Translation Research Translational Intervention Methodology Core lists: Nutrition and Obesity Research Centers at Harvard Administrative Core lists: Nutrition and Obesity Research Centers at Harvard Genomics and Cell Biology Core lists: Nutrition and Obesity Research Centers at Harvard Metabolic Imaging Core lists: Nutrition and Obesity Research Centers at Harvard Metabolic Phenotyping Core lists: Nutrition and Obesity Research Centers at Harvard lists: Nutrition and Obesity Research Centers at Harvard Statistical Consultation lists: O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston Rodent Urinary Function Testing Core lists: O'Brien Center for Benign Urologic Research at University of Wisconsin-Madision and University of Massachusetts-Boston lists: O'Brien Kidney Centers lists: O'Brien Urology Centers lists: Pediatric Centers of Excellence in Nephrology at Cincinnati Children's Hospital Medical Center Biomarker Core lists: Pediatric Centers of Excellence in Nephrology at Cincinnati Children's Hospital Medical Center Gene Expression Core lists: Cincinnati Children's Hospital Pediatric Center of Excellence lists: Pediatric Centers of Excellence in Nephrology at Cincinnati Children's Hospital Medical Center lists: Pediatric Centers of Excellence in Nephrology at Duke Division of Pediatric Nephrology lists: Pediatric Centers of Excellence in Nephrology at University of Virginia lists: Penn Diabetes Research Center Functional Genomics Core lists: Penn Diabetes Research Center Metabolomics Core lists: Penn Diabetes Research Center Mouse Phenotyping Physiology and Metabolism Core lists: University of Pennsylvania School of Medicine Penn Diabetes Research Center Pancreatic Islet Cell Biology Core Facility lists: Penn Diabetes Research Center Radioimmunoassay and Biomarkers Core Facility lists: Penn Diabetes Research Center lists: Penn Diabetes Research Center Transgenic and Chimeric Mouse Core Facility lists: Louisiana State University Pennington Biomedical Nutrition Obesity Research Center Core Facility lists: Pennington Biomedical Research Center Nutrition and Obesity Research Center Animal Models and Phenotyping Core lists: Pennington Biomedical Research Center Nutrition and Obesity Research Center Human Phenotyping Core lists: Pennington Biomedical Research Center Nutrition and Obesity Research Center Molecular Mechanisms Core lists: Pennington Biomedical Research Center Nutrition and Obesity Research Center lists: Pittsburgh Center for Kidney Research Biostatistical Analysis Services lists: Pittsburgh Center for Kidney Research Cellular Physiology lists: Pittsburgh Center for Kidney Research Kidney Imaging lists: Pittsburgh Center for Kidney Research Model Organisms lists: Pittsburgh Center for Kidney Research lists: Pittsburgh Center for Kidney Research Single Nephron and Metabolomics lists: Polycystic Kidney Disease Research and Translation Centers lists: Texas Medical Center Digestive Diseases Center Administrative Core lists: Texas Medical Center Digestive Diseases Center Cellular and Molecular Morphology Core lists: Texas Medical Center Digestive Diseases Center Functional Genomics and Microbiome lists: Texas Medical Center Digestive Diseases Center Integrative Biology Core lists: Texas Medical Center Digestive Diseases Center lists: Texas Medical Center Digestive Diseases Center Study Design and Clinical Research Core Services lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester Human Imaging Core lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester Model Systems Core lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester Molecular Genetics and Biomarker Core lists: Translational Polycystic Kidney Disease (PKD) Center at Mayo Clinic Rochester lists: UAB Hepatorenal Fibrocystic Diseases Core Center Cellular Physiology Resource lists: UAB Hepatorenal Fibrocystic Diseases Core Center Engineered Models Resource lists: UAB Hepatorenal Fibrocystic Diseases Core Center Hepato-Renal Fibrocystic Diseases Translational Resource lists: UAB Hepatorenal Fibrocystic Diseases Core Center lists: UAB Hepatorenal Fibrocystic Diseases Core Center Therapeutic Screening and Drug Development Resource lists: UAB-UCSD Core Center for Acute Kidney Injury Research Administrative Core lists: UAB-UCSD Core Center for Acute Kidney Injury Research Bioanalytical Core lists: University of Alabama at Birmingham-University of California San Diego O'Brien Center for Acute Kidney Injury Research Biostatistical Core lists: UAB-UCSD Core Center for Acute Kidney Injury Research Clinical Studies of AKI lists: UAB-UCSD Core Center for Acute Kidney Injury Research Pre-Clinical Studies of AKI lists: UAB-UCSD Core Center for Acute Kidney Injury Research lists: University of Alabama at Birmingham Diabetes Research Center Administrative Core Facility lists: University of Alabama at Birmingham Diabetes Research Center Animal Physiology Core Facility lists: University of Alabama at Birmingham Diabetes Research Center Bioanalytical REDOX Biology Core Facility lists: University of Alabama at Birmingham Diabetes Research Center Human Physiology Core Facility lists: University of Alabama at Birmingham Diabetes Research Center Interventions and Translation Core lists: University of Alabama at Birmingham Diabetes Research Center lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Animal Models Core lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Biostatistics Core lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Metabolism Core lists: University of Alabama at Birmingham Nutrition and Obesity Research Center Physical Activity Core lists: University of Alabama at Birmingham Nutrition and Obesity Research Center lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Genomics and Epigenetics Core Facility lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Human Genetics Core Facility lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Metabolic and Molecular Physiology Core Facility lists: University of California San Diego - University of California Los Angeles Diabetes Research Center lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Targeted Pathway Analysis Core Facility lists: University of California San Diego - University of California Los Angeles Diabetes Research Center Transgenic and Knockout Mouse Core Facility lists: University of California San Francisco Parnassus Flow Cytometry Core Facility lists: University of California San Francisco Diabetes Research Center Lentiviral RNAi Core Facility lists: University of California San Francisco Diabetes Research Center Microscopy Core Facility lists: University of California San Francisco Diabetes Research Center Mouse Genetics Core Facility lists: University of California San Francisco Diabetes Research Center Mouse Metabolism Core lists: University of California San Francisco Diabetes Research Center lists: University of California San Francisco Nutrition and Obesity Research Center Genetics and Genomics Core lists: University of California San Francisco Nutrition and Obesity Research Center Human Metabolism Core lists: University of California San Francisco Nutrition and Obesity Research Center Mouse Metabolism and Imaging Core lists: University of California San Francisco Nutrition and Obesity Research Center lists: University of Chicago Diabetes Research and Training Center Administrative Core lists: University of Chicago Diabetes Research and Training Center Animal Models and Physiology Core lists: University of Chicago Diabetes Research and Training Center Islet Cell Biology Core lists: University of Chicago Diabetes Research and Training Center Molecular Biology and Genetics Core Laboratory lists: University of Chicago Diabetes Research and Training Center lists: University of Colorado Anschutz Medical Campus Nutrition and Obesity Research Center lists: University of Iowa Center for Gene Therapy Cell Tissue Core lists: University of Iowa Center for Gene Therapy Clinical Core lists: University of Iowa Center for Gene Therapy Comparative Pathology Core lists: University of Iowa Center for Gene Therapy lists: University of Iowa Center for Gene Therapy Vectore Core lists: University of Michigan Nutrition and Obesity Research Center Administrative Core lists: University of Michigan Nutrition and Obesity Research Center Animal Phenotyping Core lists: University of Michigan Nutrition and Obesity Research Center Human Phenotyping Core lists: University of Michigan Nutrition and Obesity Research Center Integrative Biostatistics and Informatics Core lists: University of Michigan Nutrition and Obesity Research Center Molecular Phenotyping Core lists: University of Michigan Nutrition and Obesity Research Center lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Administrative Core lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Animal Metabolism Phenotyping Core lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Biostatistics Program lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Clinical Nutrition Research Facilitation Program lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Communication for Health Applications and Interventions Core lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Diet and Physical Activity Core lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Metabolic Molecular Phenotyping Core lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Nutrigenetics Core lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center Research Facilitation Program lists: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Cell Morphology Core lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Immunology Core lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis lists: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Vector Core Facility lists: University of Washington Diabetes Research Center Administrative Core lists: University of Washington Diabetes Research Center Cell Function Analysis Core Facility lists: University of Washington Diabetes Research Center Cellular and Molecular Imaging Core lists: University of Washington Diabetes Research Center Human Studies Core Facility lists: University of Washington Diabetes Research Center Quantitative and Functional Proteomics Core Facility lists: University of Washington Diabetes Research Center lists: University of Washington Diabetes Research Center Vector and Transgenic Mouse Core lists: Vanderbilt Diabetes Research and Training Center Cell Imaging Shared Resource Core Facility lists: Vanderbilt Diabetes Research and Training Center Hormone Assay and Analytical Services Core Facility lists: Vanderbilt Diabetes Research and Training Center Islet Procurement and Analysis Core lists: Vanderbilt Diabetes Research and Training Center Metabolic Physiology Shared Resource lists: Vanderbilt Diabetes Research and Training Center lists: Vanderbilt Diabetes Research and Training Center Transgenic Mouse and ES Cell Shared Resource lists: Vanderbilt Diabetes Research and Training Center Vanderbilt Diet Body Composition and Metabolism Core Facility lists: Vanderbilt Digestive Disease Research Center Bioanalytical Mass Spectrometry and Proteomics Core lists: Vanderbilt Digestive Disease Research Center Cellular Imaging Core lists: Vanderbilt Digestive Disease Research Center Flow Cytometry Core lists: Vanderbilt Digestive Disease Research Center lists: University of Washington Nutrition and Obesity Research Center Adipose Tissue and Obesity Core lists: University of Washington Nutrition and Obesity Research Center Administrative and Enrichment Core lists: University of Washington Nutrition and Obesity Research Center Analytic Core lists: University of Washington Nutrition and Obesity Research Center Energy Balance Core lists: Washington University Center for Diabetes Translation Research Administrative Core in Diabetes Research Core lists: University of Washington Nutrition and Obesity Research Center lists: Washington University Center for Diabetes Translation Research Dissemination and Implementation in Diabetes Research Core Facility lists: Washington University Center for Diabetes Translation Research Health Communication and Health Literacy Core Facility lists: Washington University Center for Diabetes Translation Research Health Informatics in Diabetes Research Core lists: USC Liver Transplant Program and Center for Liver Disease Analytical Metabolic Instrumentation Core lists: Washington University Center for Diabetes Translation Research Policy and Systems Science Analysis in Diabetes Research Core lists: USC Liver Transplant Program and Center for Liver Disease Cell and Tissue Imaging Core lists: Washington University Center for Diabetes Translation Research Research Partnerships with American Indian/Alaskan Native Communities Core lists: Washington University Center for Diabetes Translation Research lists: USC Liver Transplant Program and Center for Liver Disease Cell Separation and Culture Core lists: Washington University Center for Diabetes Translation Research Solutions to Diabetes in Black Americans Core lists: Washington University Digestive Diseases Research Core Center Administrative and Resource Access Core lists: USC Liver Transplant Program and Center for Liver Disease Liver Histology Core lists: USC Liver Transplant Program and Center for Liver Disease lists: Vanderbilt Center for Diabetes Translation Research Administrative Core lists: Vanderbilt Center for Diabetes Translation Research Behavioral Intervention Technologies and Services Core lists: Vanderbilt Center for Diabetes Translation Research Community Engagement Core lists: Vanderbilt Center for Diabetes Translation Research Community Outreach and Heath Disparities Core lists: Vanderbilt Center for Diabetes Translation Research lists: Washington University Digestive Diseases Research Core Center Advanced Imaging and Tissue Analysis Core lists: Vanderbilt Center for Diabetes Translation Research Translation Methods Core lists: Washington University Digestive Diseases Research Core Center Biobank Core lists: Yale Liver Center lists: Washington University Digestive Diseases Research Core Center Murine Models and Gnotobiotics Core lists: Yale Liver Center Morphology Core lists: Washington University Digestive Diseases Research Core Center lists: Yale Liver Center Clinical and Translational Core lists: Washington University School of Medicine Diabetes Research Center Cell and Tissue Imaging Core lists: Yale Liver Center Cellular and Molecular Physiology Core lists: Washington University School of Medicine Diabetes Research Center Diabetes Models Phenotyping Core Facility lists: Yale Liver Center Administrative Core lists: Washington University School of Medicine Diabetes Research Center Translational Diagnostics Core lists: Yale Diabetes Research Center lists: Washington University School of Medicine Diabetes Research Center Immunology of Type 1 Diabetes Core lists: Yale Diabetes Research Center Physiology Core Facility lists: Washington University School of Medicine Diabetes Research Center Mass Spectrometry Core lists: Yale Diabetes Research Center Molecular Genetics Core lists: Yale Diabetes Research Center Molecular Core Facility lists: Washington University School of Medicine Diabetes Research Center Morphology and Metabolic Analysis Core lists: Yale Diabetes Research Center Diabetes Translational Core Facility lists: Washington University School of Medicine Diabetes Research Center lists: Washington University School of Medicine Diabetes Research Center Transgenic and ES Cell Core lists: Yale Diabetes Research Center Clinical Metabolism Core Facility lists: Yale Diabetes Research Center Cell Biology Core Facility lists: Washington University St. Louis Nutrition Obesity Research Center lists: Yale Diabetes Research Center Administrative Core Facility lists: Yale Cooperative Center of Excellence in Hematology Animal Modeling Core lists: Yale Cooperative Center of Excellence in Hematology lists: Yale Cooperative Center of Excellence in Hematology Cell Preparation and Analysis Core lists: Yale Cooperative Center of Excellence in Hematology Imaging Core lists: Harvard Digestive Disease Center lists: Harvard Digestive Diseases Center Biomedical CORE B: Microscopy and Histopathology lists: Harvard Digestive Diseases Center Biomedical CORE C: Epithelial Cell and Mucosal Immunology lists: Harvard Digestive Diseases Center Biomedical CORE D: Gnotobiotic Mice, Microbiology and Metagenomics lists: Harvard Digestive Diseases Center Clinical Translational Research Program lists: Harvard Digestive Diseases Center Bio-Repository and Data Registry for Human Material lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Integrated Physiology Core lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Image Core lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Proteomics Core lists: Hopkins Conte Digestive Diseases Basic and Translational Research Core Center Translational Research Enhancement Core lists: UCSF Liver Center lists: UCSF Liver Center Cell Biology Core lists: UCSF Liver Center Clinical & Translational Core lists: UCSF Liver Center Immunology Core lists: UCSF Liver Center Pathology & Imaging Core lists: University of Chicago Digestive Diseases Research Core Center lists: University of Chicago Digestive Diseases Research Core Center Integrated Translational Research Core lists: University of Chicago Digestive Diseases Research Core Center Administrative Core lists: University of Chicago Digestive Diseases Research Core Center Tissue Engineering and Cell Models Core lists: University of Chicago Digestive Diseases Research Core Center Host-Microbe Core lists: University of Chicago Digestive Diseases Research Core Center Tissue and Cell Imaging Core lists: University of Michigan Center for Gastrointestinal Research lists: University of Michigan Center for Gastrointestinal Research Protein Localization, Identification and Folding Core lists: University of Michigan Center for Gastrointestinal Research In Vivo Animal and Human Studies Core lists: University of Michigan Center for Gastrointestinal Research Molecular Biology Core lists: University of Michigan Center for Gastrointestinal Research Microbiome and Metabolomics Core lists: University of North Carolina Center for Gastrointestinal Biology and Disease lists: University of North Carolina Center for Gastrointestinal Biology and Disease Advanced Analytics Core lists: University of North Carolina Center for Gastrointestinal Biology and Disease Biostatistics and Data Management Core lists: University of North Carolina Center for Gastrointestinal Biology and Disease Gnotobiotic Core lists: University of North Carolina Center for Gastrointestinal Biology and Disease Histology Core lists: University of North Carolina Center for Gastrointestinal Biology and Disease Large Animal Models Core lists: University of North Carolina Center for Gastrointestinal Biology and Disease Microbiome Core lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Molecular Pathology and Imaging Core lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Host-Microbial Analytic and Repository Core lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Genetically-Modified Mouse Core lists: University of Pennsylvania Center for Molecular Studies in Digestive and Liver Diseases Cell Culture Core lists: Joslin Diabetes Center Molecular Phenotyping and Genotyping Core lists: University of Pennsylvania Diabetes Research Center lists: Preventing Early Renal Loss in Diabetes (PERL) lists: Clinical Trials in Organ Transplantation in Children (CTOT-C) lists: Clinical Trials in Organ Transplantation (CTOT) lists: Stanford Diabetes Research Center lists: Monogenic Diabetes Registry lists: Chronic Prostatitis Collaborative Research Network Clinical Trial- Alfuzosin lists: National Glycohemoglobin Standardization Program lists: MetaCyto lists: JOINSOLVER lists: HASP lists: NetCirChro lists: Simmune lists: ABC Bacterial Transporter Systems Database lists: Kidney Precision Medicine Project lists: ValIdated Systematic IntegratiON of epigenomic data lists: The Human BioMolecular Atlas Program lists: Prevention of Lower Urinary Tract Symptoms lists: Illuminating the Druggable Genome lists: 4D Nucleome lists: immuneXpresso lists: Multi-Disciplinary Approach to the Study of Chronic Pelvic Pain lists: Secrepedia lists: MoTrPAC Data Hub lists: Human Cell Atlas lists: PANC-DB lists: Rare and Atypical Diabetes Network lists: Diabetes Control and Complications Trial lists: Diabetes Data and Hypothesis Hub lists: Common Metabolic Diseases Knowledge Portal lists: Type 1 Diabetes Knowledge Portal lists: Sleep Disorder Knowledge Portal lists: Cardiovascular Disease Knowledge Portal lists: Cerebrovascular Disease Knowledge Portal lists: Trans-Omics for Precision Medicine (TOPMed) Program lists: All of Us lists: AI-READI is listed by: NIH Data Sharing Repositories is listed by: NIDDK Research Resources is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology is related to: MTOPS Prostate Samples Analysis Consortium is related to: Neuroscience Information Framework is related to: Diabetes Disease Portal is related to: Kidney and Urinary Pathway Knowledge Base is related to: dbMHC is related to: Islet Cell Resource Centers is related to: DGAP is related to: Nuclear Receptor Resource is related to: dkCOIN is related to: Human Biological Data Interchange is related to: National Gene Vector Biorepository is related to: Creatinine Standardization Program is related to: Glomerular Filtration Rate Calculators is related to: Congressionally Directed Medical Research Program is related to: National Kidney Disease Education Program is related to: Network of Minority Health Research Investigators is related to: National Endocrine and Metabolic Diseases Information Service is related to: Kidney and Urinary Pathway Ontology is related to: National Diabetes Information Clearinghouse is related to: Digestive Diseases Statistics for the United States is related to: Diabetes in America is related to: National Digestive Diseases Information Clearinghouse is related to: Diabetes Control and Complications Trial is related to: National Hematologic Diseases Information Service is related to: National Kidney and Urologic Diseases Information Clearinghouse is related to: Nonhuman Primate Transplantation Tolerance Cooperative Study Group is related to: Type 1 Diabetes Preclinical Testing Program is related to: Diabetes Autoantibody Standardization Program is related to: AASK Clinical Trial and Cohort Study is related to: Maryland Genetics of Interstitial Cystitis is related to: Frequent Hemodialysis Network Nocturnal Trial is related to: Mammalian Gene Collection is related to: Zebrafish Gene Collection is related to: Boston Area Community Health Survey is related to: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia is related to: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study is related to: Complementary and Alternative Medicine for Urological Symptoms is related to: Mouse Mutagenesis Center for Developmental Defects is related to: CARDS Database is related to: ACCORD is related to: Program to Reduce Incontinence by Diet and Exercise is related to: Renal Disease Portal is related to: Renin Angiotensin System Study is related to: NIH Data Sharing Repositories is related to: Kidney Development Database is related to: GenePaint Interactive Anatomy Atlas is related to: EMAGE Gene Expression Database is related to: Gene Expression Omnibus is related to: MGnify is related to: FAIR Data Informatics Laboratory is related to: Type 1 Diabetes Knowledge Portal is related to: Polycystic Kidney Disease Research Resource Consortium has parent organization: SciCrunch has parent organization: University of California at San Diego; California; USA	Digestive disease, Kidney disease, Diabetes, Metabolic disease, Endocrine disease, Obesity, Urologic disease, Type 1 diabetes, Type 2 diabetes	NIDDK U24 DK097771	PMID:26393351	Free, Freely available	nlx_153866, r3d100012845	http://scicrunch.org/dknet, https://doi.org/10.17616/R31NJMEL		SCR_001606	National Institute of Diabetes and Digestive and Kidney Disease Information Network, NIDDK Information Network, DKnet, NIDDKInformation Network	2026-08-21 12:36:26	21
ISA Infrastructure for Managing Experimental Metadata Resource Report Resource Website 10+ mentions	ISA Infrastructure for Managing Experimental Metadata (RRID:SCR_002041)		data or information resource, narrative resource, software resource, standard specification	Desktop software suite targeted to curators and experimentalists that assists in the reporting and local management of experimental metadata, engages with minimum information checklists and ontologies and formats studies for submission to international public repositories. The ISA software suite is the product of an ongoing collaboration between various research and service groups from diverse life science domains. It represents an opportunity for the wider research community to start taking data management into their own hands by supporting graduated adherence to community standards and the efficient curation of experimental metadata at source, shielded from underlying complexities. The software suite is comprised of several platform-independent Java-based software components for local use, including a relational database, built around the ISA-Tab format. The components work both as stand-alone applications and as a unified system.	data management, metadata, minimum information, ontology, format, genomics, proteomics, transcriptomics, standards-compliant	is recommended by: NERC Environmental Bioinformatics Centre is listed by: FORCE11 is related to: PRIDE Converter 2 is related to: SEEK is related to: Standards-based Infrastructure with Distributed Resources is related to: ArrayExpress is related to: European Nucleotide Archive (ENA) is related to: Stem Cell Commons is related to: Stem Cell Discovery Engine is related to: Genomic Standards Consortium has parent organization: University of Oxford; Oxford; United Kingdom has parent organization: European Bioinformatics Institute has parent organization: Harvard T.H. Chan School of Public Health		BBSRC BB/I000917/1	PMID:20679334	Free, Available for download, Freely available	nif-0000-12074	http://isatab.sourceforge.net/index.html		SCR_002041	Investigation / Study / Assay (ISA) infrastructure, ISA metadata tracking tools, Investigation/Study/Assay infrastructure, isainfrastructure, ISA infrastructure, Investigation / Study / Assay infrastructure, ISAtools, Investigation/Study/Assay (ISA) infrastructure, ISA tools	2026-08-21 12:36:37	12
Gene Expression Atlas Resource Report Resource Website 100+ mentions	Gene Expression Atlas (RRID:SCR_007989)		atlas, data or information resource, database, expression atlas	Gene Expression Atlas is a semantically enriched database of meta-analysis based summary statistics over a curated subset of ArrayExpress Archive, servicing queries for condition-specific gene expression patterns as well as broader exploratory searches for biologically interesting genes/samples. The EBI Gene Expression Atlas Blog discusses ideas, features and problems of creating a large scale meta-analytical atlas of gene expression from publicly available microarray data. Atlas REST API provides all the results available in the main web application in a pragmatic, easy to use form - simple HTTP GET queries as input and either JSON or XML formats as output. Gene Expression Atlas goals: 1. Provision of a statistically robust framework for integration of gene expression experiment results across different platforms at a meta-analytical level 2. A simple interface for identifying strong differential expression candidate genes in conditions of interest 3. Integration of ontologies for high quality annotation of gene and sample attributes 4. Construction of new gene expression summarized views, with a view to analysis of putative signaling pathway targets, discovery of correlated gene expression patterns and the identification of condition/tissue-specific patterns of gene expression.	expression, gene, annotation, assay, molecular neuroanatomy resource, gold standard, bio.tools	is listed by: bio.tools is listed by: Debian is related to: ArrayExpress is related to: Experimental Factor Ontology has parent organization: European Bioinformatics Institute		EMBL ; European Union FELICS ; European Union EMERALD			nif-0000-06686, biotools:gxa_expt, r3d100010223, biotools:gene_expression_atlas	https://bio.tools/gxa_expt, https://bio.tools/gene_expression_atlas, https://doi.org/10.17616/R3Z888		SCR_007989		2026-08-21 12:38:32	132
NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases Resource Report Resource Website 100+ mentions	NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases (RRID:SCR_012895)	NIDDK	government granting agency	Center with mission to conduct and support medical research and research training and to disseminate science-based information on diabetes and other endocrine and metabolic diseases. The NIDDK supports a wide range of medical research through grants to universities and other medical research institutions across the country.	diabetes, metabolic disease, digestive, kidney, endocrine, medical research	recommends: Cell Image Library (CIL) recommends: Biological General Repository for Interaction Datasets (BioGRID) recommends: NIDDK Central Repository recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) recommends: Metabolomics Workbench recommends: PeptideAtlas recommends: Network Data Exchange (NDEx) recommends: Mouse Genome Informatics (MGI) recommends: Zebrafish Information Network (ZFIN) recommends: FlyBase recommends: Database of Interacting Proteins (DIP) recommends: WormBase recommends: PhysioNet recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) recommends: UniProt recommends: dbSNP recommends: DNA DataBank of Japan (DDBJ) recommends: European Nucleotide Archive (ENA) recommends: dbVar recommends: ClinicalTrials.gov recommends: European Variation Archive (EVA) recommends: MGnify recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL) recommends: GenBank recommends: Gene Expression Omnibus (GEO) recommends: miRBase recommends: Database of Genomic Variants Archive (DGVa) recommends: Crystallography Open Database (COD) recommends: Coherent X-Ray Imaging Data Bank (CXIDB) recommends: Biological Magnetic Resonance Data Bank (BMRB) recommends: Worldwide Protein Data Bank (wwPDB) recommends: EMDataResource.org recommends: NCBI Assembly Archive Viewer recommends: Cambridge Crystallographic Data Centre (CCDC) recommends: Inorganic Crystal Structure Database (ICSD) recommends: Structural Biology Grid recommends: ArrayExpress recommends: GenomeRNAi recommends: NCBI database of Genotypes and Phenotypes (dbGap) recommends: Protein Circular Dichroism Data Bank (PCDDB) recommends: Electron Microscopy Data Bank at PDBe (MSD-EBI) recommends: PDBe - Protein Data Bank in Europe recommends: PubChem BioAssay recommends: Japanese Genotype-phenotype Archive (JGA) recommends: ProteomeXchange recommends: IntAct recommends: European Genome phenome Archive recommends: MetaboLights recommends: PubChem Substance recommends: The Immunology Database and Analysis Portal (ImmPort) recommends: STRENDA recommends: Kinetic Models of Biological Systems (KiMoSys) recommends: FLOWRepository recommends: Mass spectrometry Interactive Virtual Environment (MassIVE) recommends: Global Proteome Machine Database (GPM DB) recommends: Cancer Imaging Archive (TCIA) recommends: German Neuroinformatics Node (G-Node) recommends: 1000 Functional Connectomes Project recommends: ChEMBL recommends: Image Data Resource (IDR) recommends: SICAS Medical Image Repository recommends: ZENODO recommends: Dataverse Network Project recommends: NeuroMorpho.Org recommends: Mendeley Data recommends: NIMH Data Archive recommends: NIH Figshare Archive recommends: FigShare recommends: National Addiction and HIV Data Archive Program (NAHDAP) recommends: Dryad Digital Repository recommends: Open Science Framework recommends: OpenNeuro recommends: SPARC Portal lists: Mutant Mouse Resource and Research Center lists: NIDDK Research Resources is affiliated with: Cystic Fibrosis Research and Translation Centers is affiliated with: Nutrition and Obesity Research Centers is affiliated with: O'Brien Urology Centers is affiliated with: Hematology Centers is affiliated with: Polycystic Kidney Disease Research and Translation Centers is affiliated with: O'Brien Kidney Centers is affiliated with: Diabetes Research Centers is affiliated with: Digestive Disease Centers is affiliated with: Centers for Diabetes Translation Research is affiliated with: Pediatric Centers of Excellence in Nephrology is affiliated with: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study is related to: Bridging Interventional Development Gaps is related to: Polycystic Kidney Disease Research Resource Consortium has parent organization: National Institutes of Health is parent organization of: MTOPS Prostate Samples Analysis Consortium is parent organization of: Symptom Score for Benign Prostatic Hyperplasia is parent organization of: Type 1 Diabetes - Rapid Access to Intervention Development is parent organization of: National Diabetes Education Program is parent organization of: Family Investigation of Nephropathy of Diabetes is parent organization of: Frequent Hemodialysis Network Daily Trial is parent organization of: HemBase is parent organization of: NIDDK- National Institute of Diabetes and Digestive and Kidney Diseases Obesity Resources is parent organization of: dkCOIN is parent organization of: National Kidney Disease Education Program is parent organization of: Network of Minority Health Research Investigators is parent organization of: National Endocrine and Metabolic Diseases Information Service is parent organization of: National Diabetes Information Clearinghouse is parent organization of: National Digestive Diseases Information Clearinghouse is parent organization of: National Hematologic Diseases Information Service is parent organization of: National Kidney and Urologic Diseases Information Clearinghouse is parent organization of: Type 1 Diabetes Preclinical Testing Program is parent organization of: Frequent Hemodialysis Network Nocturnal Trial is parent organization of: Boston Area Community Health Survey is parent organization of: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia is parent organization of: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study	Type 1 diabetes, Type 2 diabetes, Diabetes, Digestive disease, Kidney disease, Endocrine disease, Obesity, Blood disease, Liver disease, Urologic disease				nlx_inv_1005102			SCR_012895	National Institute of Diabetes and Digestive and Kidney Diseases	2026-08-15 11:24:33	156
Experimental Factor Ontology Resource Report Resource Website 10+ mentions	Experimental Factor Ontology (RRID:SCR_003574)	EFO	controlled vocabulary, data or information resource, ontology	An application focused ontology modelling the experimental factors in ArrayExpress and Gene Expression Atlas. It has been developed to increase the richness of the annotations that are currently made in the ArrayExpress repository, to promote consistent annotation, to facilitate automatic annotation and to integrate external data. The ontology describes cross-product classes from reference ontologies in area such as disease, cell line, cell type and anatomy. The methodology employed in the development of EFO involves construction of mappings to multiple existing domain specific ontologies, such as the Disease Ontology and Cell Type Ontology. This is achieved using a combination of automated and manual curation steps and the use of a phonetic matching algorithm. The ontology is evaluated with use cases from the ArrayExpress repository and ArrayExpress Atlas. You may also browse the EFO in the NCBO Bioportal. Term submissions are welcome.	gene expression, owl, experimental factor, disease, cell line, cell type, anatomy, gold standard	is listed by: BioPortal is related to: ArrayExpress is related to: ArrayExpress is related to: Gene Expression Atlas has parent organization: European Bioinformatics Institute		European Molecular Biology Laboratory ; European Union FELICS contract 021902; European Union EMERALD LSHG-CT-2006-037686; European Union Gen2Phen contract 200754	PMID:20200009	The community can contribute to this resource	nlx_11363			SCR_003574		2026-08-21 12:37:09	19
FlyMine Resource Report Resource Website 100+ mentions	FlyMine (RRID:SCR_002694)	FlyMine	data or information resource, database	THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 14,2026. Integrated database of genomic, expression and protein data for Drosophila, Anopheles, C. elegans and other organisms. You can run flexible queries, export results and analyze lists of data. FlyMine presents data in categories, with each providing information on a particular type of data (for example Gene Expression or Protein Interactions). Template queries, as well as the QueryBuilder itself, allow you to perform searches that span data from more than one category. Advanced users can use a flexible query interface to construct their own data mining queries across the multiple integrated data sources, to modify existing template queries or to create your own template queries. Access our FlyMine data via our Application Programming Interface (API). We provide client libraries in the following languages: Perl, Python, Ruby and & Java API	anopheles, genome, c. elegans, drosophila, gene, chromosomal location, genomics, proteomics, gene expression, interaction, homology, function, regulation, protein, phenotype, pathway, disease, publication, FASEB list	is related to: FlyBase is related to: UniProt is related to: Ensembl is related to: InterPro is related to: Biological General Repository for Interaction Datasets (BioGRID) is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: Tree families database is related to: IntAct is related to: Gene Ontology is related to: GOA is related to: ArrayExpress is related to: REDfly Regulatory Element Database for Drosophilia is related to: KEGG is related to: Reactome has parent organization: University of Cambridge; Cambridge; United Kingdom		Wellcome Trust 067205; NHGRI	PMID:17615057	THIS RESOURCE IS NO LONGER IN SERVICE	nif-0000-02845			SCR_002694		2026-08-21 12:36:50	107
DDBJ Omics Archive Resource Report Resource Website	DDBJ Omics Archive (RRID:SCR_000597)	DOR	data or information resource, data repository, database, service resource, storage service resource	THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 6,2023. Archival database of functional genomics data generated by microarray and highly parallel new generation sequencers. Data are exchanged between ArrayExpress at EBI and DOR in common MAGE-TAB format. Supports MIAME and MINSEQE-compliant data submissions. DOR issues accession numbers, E-DORD-n to experiment and A-DORD-n to array design. DOR exchanges public data with the EBI ArrayExpress in common MAGE-TAB format. Note: At present, DOR does not accept submissions. DDBJ will announce launch of DOR when it is ready. (2013/01/31) The data can be kept private until your paper is published. You can set the hold date for a maximum of 1 year and can change it. Registered records are released according to the Data Release Policy.	functional genomics, array, sequence	is listed by: OMICtools is related to: ArrayExpress is related to: MIAME is related to: MINSEQE is related to: MAGE-TAB has parent organization: DNA DataBank of Japan (DDBJ)			PMID:22110025	THIS RESOURCE IS NO LONGER IN SERVICE	OMICS_01026	http://trace.ddbj.nig.ac.jp/dor		SCR_000597	Ddbj Omics aRchive	2026-08-21 12:36:17	0
European Bioinformatics Institute Resource Report Resource Website 1000+ mentions	European Bioinformatics Institute (RRID:SCR_004727)	EMBL-EBI	institution	Non-profit academic organization for research and services in bioinformatics. Provides freely available data from life science experiments, performs basic research in computational biology, and offers user training programme, manages databases of biological data including nucleic acid, protein sequences, and macromolecular structures. Part of EMBL.	organization, academic, bioinformatics, research, service, data, computational, biology, training, database, DNA, protein	is used by: Blueprint Epigenome is listed by: re3data.org is related to: AgedBrainSYSBIO is related to: ProteomeXchange is related to: Open PHACTS is related to: RHEA is related to: TraCeR is related to: 3D-Beacons is related to: RNAcentral has parent organization: European Molecular Biology Laboratory is parent organization of: CoGenT++ is parent organization of: ENA Sequence Version Archive is parent organization of: Reaper - Demultiplexing trimming and filtering sequencing data is parent organization of: PeakAnalyzer is parent organization of: Tally is parent organization of: Clustal Omega is parent organization of: Biocatalogue - The Life Science Web Services Registry is parent organization of: Experimental Network for Functional Integration: A European Network of Excellence for Data Integration and Systems Biology is parent organization of: The Alternatve Splicing Database is parent organization of: BioModels is parent organization of: CHEBI is parent organization of: MAGE is parent organization of: Ensembl is parent organization of: MIAME is parent organization of: UniProt is parent organization of: Ligand-Gated Ion Channel Database is parent organization of: EBI Genomes is parent organization of: IMEx - The International Molecular Exchange Consortium is parent organization of: Toolbox at the European Bioinformatics Institute is parent organization of: Clustal W2 is parent organization of: ArrayExpress is parent organization of: IMGT/HLA is parent organization of: IntEnz- Integrated relational Enzyme database is parent organization of: IPD - Immuno Polymorphism Database is parent organization of: IPI is parent organization of: MicroArray and Gene Expression Markup Language is parent organization of: DaliLite Pairwise comparison of protein structures is parent organization of: Chemical Information Ontology is parent organization of: PANDIT : Protein and Associated Nucleotide Domains with Inferred Trees is parent organization of: Proteomics Identifications (PRIDE) is parent organization of: Software Ontology is parent organization of: FSSP - Families of Structurally Similar Proteins is parent organization of: Experimental Factor Ontology is parent organization of: Identifiers.org is parent organization of: HipSci is parent organization of: ProteomeXchange is parent organization of: Taxonomy is parent organization of: PDBe - Protein Data Bank in Europe is parent organization of: EBI Dbfetch is parent organization of: ProFunc is parent organization of: WSDbfetch (SOAP) is parent organization of: QuickGO is parent organization of: SAS - Sequence Annotated by Structure is parent organization of: UniProt DAS is parent organization of: UniParc at the EBI is parent organization of: Patent Abstracts is parent organization of: BioSample Database at EBI is parent organization of: Database of Genomic Variants Archive (DGVa) is parent organization of: European Genome phenome Archive is parent organization of: UniSave is parent organization of: ArchSchema is parent organization of: UniRef at the EBI is parent organization of: EBIMed is parent organization of: Kraken is parent organization of: SIMBioMS is parent organization of: Expression Profiler is parent organization of: Whatizit is parent organization of: InterProScan is parent organization of: VectorBase is parent organization of: DRCAT Resource Catalogue is parent organization of: FunTree is parent organization of: CREATE is parent organization of: BioMedBridges is parent organization of: PSICQUIC Registry is parent organization of: PDBsum is parent organization of: European Nucleotide Archive (ENA) is parent organization of: DrugPort is parent organization of: Ontology Lookup Service is parent organization of: EDAM Ontology is parent organization of: InterPro is parent organization of: MIRIAM Resources is parent organization of: EB-eye Search is parent organization of: SBO is parent organization of: Ensembl Genomes is parent organization of: NeuronVisio is parent organization of: IntAct is parent organization of: WSsas - Web Service for the SAS tool is parent organization of: Enzyme Structures Database is parent organization of: EMBOSS CpGPlot/CpGReport/Isochore is parent organization of: PaperMaker is parent organization of: CluSTr is parent organization of: Genome Reviews is parent organization of: GOA is parent organization of: Integr8 : Access to complete genomes and proteomes is parent organization of: IPD-ESTDAB- The European Searchable Tumour Line Database is parent organization of: IPD-HPA - Human Platelet Antigens is parent organization of: IPD-KIR - Killer-cell Immunoglobulin-like Receptors is parent organization of: IPD-MHC- Major Histocompatibility Complex is parent organization of: HilbertVis is parent organization of: Gene Expression Atlas is parent organization of: Parasite genome databases and genome research resources is parent organization of: Alternative Exon Database is parent organization of: AltExtron Database is parent organization of: Patent Data Resources is parent organization of: Pompep is parent organization of: Mouse finder is parent organization of: Gene Regulation Ontology is parent organization of: CiteXplore literature searching is parent organization of: MaxSprout is parent organization of: SRS is parent organization of: MicroCosm Targets is parent organization of: Kalign is parent organization of: MUSCLE is parent organization of: FASTA is parent organization of: WU-BLAST is parent organization of: Oases is parent organization of: HTS Mappers is parent organization of: CRAM is parent organization of: CSA - Catalytic Site Atlas is parent organization of: ArrayExpress (R) is parent organization of: WiggleTools is parent organization of: vsn is parent organization of: rlsim is parent organization of: ISA Infrastructure for Managing Experimental Metadata is parent organization of: BioMart Project is parent organization of: BioPerl is parent organization of: BioJS is parent organization of: EMDataResource.org is parent organization of: HTqPCR is parent organization of: Reactome is parent organization of: Europe PubMed Central is parent organization of: h5vc is parent organization of: LexGrid is parent organization of: Consensus CDS is parent organization of: 1000 Genomes: A Deep Catalog of Human Genetic Variation is parent organization of: OrChem is parent organization of: Orphanet Rare Disease Ontology is parent organization of: Reflect is parent organization of: BioLayout Express 3D is parent organization of: Virtual Fly Brain is parent organization of: GeneWise is parent organization of: PhenoMeNal is parent organization of: Ensembl Metazoa is parent organization of: Velvet		BBSRC ; EMBL member states ; European Union ; Industry Programme partners ; NIH ; UK Research Councils ; Wellcome Trust			grid.225360.0, Wikidata: Q1341845, ISNI: 0000 0000 9709 7726, nlx_72386	https://ror.org/02catss52		SCR_004727	EBI, European Molecular Biology Laboratory - European Bioinformatics Institute	2026-08-21 12:37:25	3760
Integrated Datasets Resource Report Resource Website	Integrated Datasets (RRID:SCR_010503)		catalog, data or information resource, database	A virtual database cataloging numerous data set resources, including: BrainMaps.org, Cell Centered Database, Clinical Trials Network (CTN) Data Share, ClinicalTrials.gov, CRCNS, Gene Expression Omnibus, ArrayExpress, MPD - Mouse Phenome Database, BioSharing, Gene Weaver, XNAT Central, 1000 Functional Connectomes Project, Health.Data.gov, SciCrunch Registry, NIF Registry Automated Crawl Data, NeuroVault, OpenfMRI, Physiobank, RanchoBiosciences, YPED, Data.gov Science, and Research Data Catalog.	data set, database, integrated, catalog, data set resource	uses: BrainMaps.org uses: Cell Centered Database uses: NIDA Data Share uses: ClinicalTrials.gov uses: CRCNS uses: Gene Expression Omnibus uses: ArrayExpress uses: Mouse Phenome Database (MPD) uses: FAIRsharing uses: Gene Weaver uses: XNAT Central uses: 1000 Functional Connectomes Project uses: Health.Data.gov uses: SciCrunch Registry uses: NIF Registry Automated Crawl Data uses: NeuroVault uses: OpenNeuro uses: Physiobank uses: RanchoBiosciences uses: YPED uses: Data.gov Science and Research Data Catalog is used by: NIF Data Federation has parent organization: Omics Discovery Index has parent organization: Integrated has parent organization: SciCrunch				Data are licensed by their respective owners. Use and distribution is subject to the Terms of Use by the original resource as well as the, Creative Commons Attribution License	nlx_158508		https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_154697-18	SCR_010503	Integrated Data sets, Integrated Catalog of Datasets	2026-08-21 12:39:23	0
BioSample Database at EBI Resource Report Resource Website 10+ mentions	BioSample Database at EBI (RRID:SCR_004856)	BioSD	data or information resource, database	Database that aggregates sample information for reference samples (e.g. Coriell Cell lines) and samples for which data exist in one of the EBI''''s assay databases such as ArrayExpress, the European Nucleotide Archive or PRoteomics Identificates DatabasE. It provides links to assays for specific samples, and accepts direct submissions of sample information. The goals of the BioSample Database include: # recording and linking of sample information consistently within EBI databases such as ENA, ArrayExpress and PRIDE; # minimizing data entry efforts for EBI database submitters by enabling submitting sample descriptions once and referencing them later in data submissions to assay databases and # supporting cross database queries by sample characteristics. The database includes a growing set of reference samples, such as cell lines, which are repeatedly used in experiments and can be easily referenced from any database by their accession numbers. Accession numbers for the reference samples will be exchanged with a similar database at NCBI. The samples in the database can be queried by their attributes, such as sample types, disease names or sample providers. A simple tab-delimited format facilitates submissions of sample information to the database, initially via email to biosamples (at) ebi.ac.uk. Current data sources: * European Nucleotide Archive (424,811 samples) * PRIDE (17,001 samples) * ArrayExpress (1,187,884 samples) * ENCODE cell lines (119 samples) * CORIELL cell lines (27,002 samples) * Thousand Genome (2,628 samples) * HapMap (1,417 samples) * IMSR (248,660 samples)	cell line, cell, nucleotide, sequencing, proteomics, peptide, protein, genomics, gene expression, biological sample, molecular, sequence, structure, cell line, topical portal, aggregator, gold standard, bio.tools	uses: European Nucleotide Archive (ENA) uses: Proteomics Identifications (PRIDE) uses: ArrayExpress uses: ENCODE uses: Coriell Institute for Medical Research uses: 1000 Genomes: A Deep Catalog of Human Genetic Variation uses: International HapMap Project uses: International Mouse Strain Resource is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: NCBI BioSample has parent organization: European Bioinformatics Institute		European Molecular Biology Laboratory; Heidelberg; Germany ; European Union FP7 HEALTH-F4-2010-241669; European Union FP7 HEALTH-F4-2007-201413	PMID:22096232	The community can contribute to this resource, Acknowledgement requested	biotools:biosamples, r3d100012628, OMICS_01025, nlx_143930	https://bio.tools/biosamples, https://doi.org/10.17616/R37R3P		SCR_004856	BioSamples database, BioSamples, BioSamples Database at EBI, BioSample Database at the EBI, EBI BioSample Database, BioSample Database, BioSD at EBI, BioSD - BioSample Database	2026-08-21 12:37:28	16
Magic Resource Report Resource Website 500+ mentions	Magic (RRID:SCR_006406)	MAGIC	data or information resource, database, service resource	Web based interface for exploring and analyzing a comprehensive maize-specific cross-platform expression compendium. This compendium was constructed by collecting, homogenizing and formally annotating publicly available microarrays from Gene Expression Omnibus (GEO), and ArrayExpress.	gene expression, microarray, development stage, annotation, line, perturbation, gene, contrast, pathway, locus tag, bio.tools, FASEB list	is listed by: OMICtools is listed by: bio.tools is listed by: Debian is related to: Gene Expression Omnibus is related to: ArrayExpress is related to: Plant Ontology is related to: Gene Ontology has parent organization: Ghent University; Ghent; Belgium			PMID:24407224		biotools:magic, OMICS_02206	https://bio.tools/magic		SCR_006406	MAGIC - MAize Gene expressIon Compendium, MAize Gene expressIon Compendium	2026-08-21 12:37:56	709
re3data.org Resource Report Resource Website 50+ mentions	re3data.org (RRID:SCR_006782)	re3data.org	data or information resource, database, registry	Global registry of research data repositories from all academic disciplines that allows the easy identification of appropriate research data repositories, both for data producers and users. Information icons display principal attributes of a repository that can be used for multi-faceted searches. Repository operators can suggest their infrastructures to be listed via a simple application form. A repository is indexed when the minimum requirements are met, i.e. mode of access to the data and repository, as well as the terms of use.	vocabulary, registry, metadata standard, data sharing, FASEB list	lists: Academic Seismic Portal at UTIG lists: National Addiction and HIV Data Archive Program (NAHDAP) lists: Alaska Climate Research Center lists: MINT lists: Internet Archive lists: MatrixDB lists: Animal QTLdb lists: MPIDB lists: BeetleBase lists: Conserved Domain Database lists: NeuroMorpho.Org lists: Marine Geoscience Data System lists: Cell Centered Database lists: dbMHC lists: Human Mortality Database lists: UniProt lists: Ligand-Gated Ion Channel Database lists: EcoGene lists: NCBI Genome lists: ESTHER lists: Genomes Online Database lists: Gramene lists: American FactFinder lists: Human Proteinpedia lists: IMGT/HLA lists: Influenza Virus Resource lists: DOE Joint Genome Institute lists: MetaCrop lists: ISPS Data Archive lists: MorphBank lists: miRBase lists: Inter-university Consortium for Political and Social Research (ICPSR) lists: Mouse Phenome Database (MPD) lists: MorphoBank lists: dbVar lists: Open Science Framework lists: TalkBank lists: Nucleic Acid Database lists: NCBI Taxonomy lists: NCBI Protein Database lists: PHI-base lists: Alberta Geological Survey lists: Protein Clusters lists: Reactome lists: Cell Image Library (CIL) lists: eyeMoviePedia lists: ALLBUS - German General Social Survey lists: TPA lists: Agency for Healthcare Research and Quality lists: Alaska Satellite Facility lists: Current German Weather Stations lists: NCBI Structure lists: BOLD lists: PDBe - Protein Data Bank in Europe lists: FishBase lists: Nucleotide database lists: NCBI BioSystems Database lists: SGD lists: Data.gov lists: RHEA lists: European Bioinformatics Institute lists: NCBI Probe lists: NCBI Nucleotide lists: Database of Genomic Variants Archive (DGVa) lists: NCBI Popset lists: Whole Brain Atlas lists: EMAGE Gene Expression Database lists: Limited Access Datasets From NIMH Clinical Trials lists: Tree of Life Web Project lists: TreeBASE lists: UCSC Genome Browser lists: UniPROBE lists: Crystallography Open Database (COD) lists: National Archive of Computerized Data on Aging (NACDA) lists: EOL - Encyclopedia of Life lists: VectorBase lists: caArray lists: NCBI Epigenomics lists: GWAS Central lists: QTL Archive lists: Proteome Commons lists: XNAT Central lists: 4TU.Datacentrum lists: Amazon Web Services Public Data Sets lists: ChemSpider lists: DataStaR lists: Rat Genome Database (RGD) lists: Atlas of Living Australia lists: Electron Microscopy Data Bank at PDBe (MSD-EBI) lists: Phytozome lists: FlyBase lists: MaizeGDB lists: Tuberculosis Database lists: InterPro lists: UNAVCO lists: The Human Protein Atlas lists: InnateDB lists: UniSTS lists: Launchpad lists: Surveillance Epidemiology and End Results lists: FAOSTAT lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database lists: HIstome: The Histone Infobase lists: HPRD - Human Protein Reference Database lists: Biological General Repository for Interaction Datasets (BioGRID) lists: INFEVERS lists: Reciprocal Net lists: Africa Centre for Health and Population Studies lists: BeeBase lists: Biodiversity Heritage Library lists: Databrary lists: ACADIS Gateway lists: ACEpepDB lists: AIMS Data Centre lists: ALADDIN lists: ASTER lists: Access to Archival Databases lists: AidData lists: Alaska Ocean Observing System lists: J. Craig Venter Institute lists: Wellcome Trust Sanger Institute; Hinxton; United Kingdom lists: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) lists: myExperiment lists: BioModels lists: Addgene lists: Antarctic and Southern Ocean Data Portal lists: OpenTopography lists: National Snow and Ice Data Center lists: Biological Magnetic Resonance Data Bank (BMRB) lists: dbSNP lists: Ensembl lists: DNA DataBank of Japan (DDBJ) lists: Entrez Gene lists: Zebrafish Information Network (ZFIN) lists: GitHub lists: DrugBank lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: Gene Expression Nervous System Atlas lists: SumsDB lists: GenBank lists: GermOnline lists: HGNC lists: Greengenes lists: Neuroscience Information Framework lists: HomoloGene lists: ArrayExpress lists: JASPAR lists: WormBase lists: Database of Interacting Proteins (DIP) lists: EMDataResource.org lists: ResearchCompendia lists: Proteomics Identifications (PRIDE) lists: RefSeq lists: FAIRsharing lists: PubChem lists: FigShare lists: UniGene lists: NIMH Data Archive lists: TAIR lists: NCBI BioProject lists: SMD lists: OpenNeuro lists: SoyBase lists: Beta Cell Biology Consortium lists: Biomedical Informatics Research Network lists: Dryad Digital Repository lists: Atlantic Canada Conservation Data Centre lists: Agri-environmental Research Data Repository lists: Australian Antarctic Data Centre lists: Antibody Registry lists: Mouse Genome Informatics (MGI) lists: European Nucleotide Archive (ENA) lists: NIDDK Central Repository lists: GigaScience lists: PeptideAtlas lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation lists: IntAct lists: fMRI Data Center lists: Gene Expression Omnibus lists: Data and Specimen Hub (NICHD DASH) lists: NIDA Data Share lists: The NINDS Human Cell and Data Repository (NHCDR) lists: Microphysiology Systems Database lists: Dataverse Network Project lists: Mendeley lists: Vivli lists: Metabolomics Workbench lists: Qualitative Data Repository lists: Protocols.io lists: ZENODO lists: STRENDA lists: Code Ocean lists: Brain Image Library lists: German Collection of Microorganisms and Cell Cultures lists: INPTDAT lists: DataONE lists: GBIF - Global Biodiversity Information Facility lists: Lamont-Doherty Core Repository lists: CaltechDATA lists: Synapse lists: Incorporated Research Institutions for Seismology lists: Cancer Imaging Archive (TCIA) lists: Mendeley Data lists: UK Data Archive lists: GigaDB lists: PhysioNet lists: Project Data Sphere lists: Influenza Research Database (IRD) lists: Simtk.org lists: ResearchGate lists: Virus Pathogen Resource (ViPR) lists: Cambridge Structural Data Base lists: 4TU.ResearchData lists: Aperta Turkey Open Archive lists: Polar Data Catalogue lists: Arch lists: Australian Data Archive lists: Australian Ocean Data Network lists: Barbara A. Mikulski Archive for Space Telescopes lists: Aston Data Explorer lists: Birkbeck Research Data lists: B2SHARE Eudat lists: BioHeritage National Science Challenge Data Repository lists: Bolin Centre Database lists: Brown Digital Repository is listed by: FORCE11 is related to: U.S. Census Bureau is related to: Rat Genome Database (RGD) is related to: ResearchCompendia has parent organization: Humboldt University of Berlin; Berlin; Germany has parent organization: Karlsruhe Institute of Technology; Karlsruhe; Germany		DFG		The community can contribute to this resource	nlx_152589			SCR_006782	Registry of Research Data Repositories, re3data.org: Registry of Research Data Repositories, re3data	2026-08-21 12:38:03	89
Bgee: dataBase for Gene Expression Evolution Resource Report Resource Website 50+ mentions	Bgee: dataBase for Gene Expression Evolution (RRID:SCR_002028)	Bgee	data or information resource, database	Database to retrieve and compare gene expression patterns between animal species. Bgee first maps heterogeneous expression data (currently bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data) to anatomy and development of different species. Bgee is based exclusively on curated healthy wild-type expression data (e.g., no gene knock-out, no treatment, no disease), to provide a comparable reference of gene expression.	gene expression, scrna-seq, rna-seq, affymetrix, in situ hybridization, expressed sequence tag, cross specie, comparison, homology, anatomy, developmental stage, gene expression pattern, development, genome, function, chordate, fish, transcriptiome, embryo, adult, mirna, protein coding, prenatal, immature, post-embryonic development, alimentary system, cardiovascular system, nervous system, renal system, reproductive system, respiratory system, skeletal system, ortholog, ontology, FASEB list	is related to: Gene Expression Omnibus is related to: NCBI Sequence Read Archive (SRA) is related to: ArrayExpress is related to: Zebrafish Information Network (ZFIN) is related to: Xenbase is related to: Mouse Genome Informatics (MGI) is related to: Berkeley Drosophila Genome Project is related to: UniGene is related to: Zebrafish Anatomical Ontology is related to: eVOC is related to: Adult Mouse Anatomy Ontology is related to: Xenopus Anatomy Ontology is related to: Drosophila anatomy and development ontologies is related to: Ensembl has parent organization: SIB Swiss Institute of Bioinformatics has parent organization: University of Lausanne; Lausanne; Switzerland				Free, Freely available	nif-0000-11819, r3d100014596	https://doi.org/10.17616/R31NJNR8		SCR_002028	Bgee: dataBase Gene Expression Evolution, dataBase Gene Expression Evolution	2026-08-21 12:36:35	70

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