HGNC
Resource Report
Resource Website
500+ mentions
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HGNC (RRID:SCR_002827)
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controlled vocabulary, data or information resource, database
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Only worldwide authority that provides standardized nomenclature, i.e. gene names and symbols (short form abbreviations), for all known human genes, and stores all approved symbols in the HGNC database. Approved human gene nomenclature. Database of gene symbols and names. Manually curated genes into groups based on shared characteristics such as homology, function or phenotype. Data for protein-coding genes, pseudogenes and non-coding RNAs.
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gene, owl, gene symbol, phenotype, nomenclature, gene family, gene groups, genomic, proteomic, ortholog, web service, locus, protein coding, genetics, gold standard, bio.tools, FASEB list, GCBR, ELIXIR Core Data Resource, DRKB
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is used by: Nowomics
is used by: Cytokine Registry
is listed by: BioPortal
is listed by: re3data.org
is listed by: bio.tools
is listed by: Debian
is related to: Rat Gene Symbol Tracker
is related to: INFEVERS
is related to: VGNC
has parent organization: University of Cambridge School of Clinical Medicine; Cambridge; United Kingdom
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NHGRI U24HG003345 |
PMID:36243972
PMID:32747822
PMID:34615987
PMID:33152070 |
Free, Freely available |
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biotools:genenames.org, nif-0000-02955, r3d100010901 |
http://bioportal.bioontology.org/ontologies/HUGO, https://bio.tools/genenames.org, https://doi.org/10.17616/R3XC80 |
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SCR_002827 |
HUGO symbols, HGNC Database, HGNC - HUGO Gene Nomenclature Committee, HUGO Gene Nomenclature Committee, Human Genome Organization Gene Symbols |
2026-08-03 09:32:09 |
974 |
re3data.org
Resource Report
Resource Website
50+ mentions
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re3data.org (RRID:SCR_006782)
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re3data.org
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registry, data or information resource, database
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Global registry of research data repositories from all academic disciplines that allows the easy identification of appropriate research data repositories, both for data producers and users. Information icons display principal attributes of a repository that can be used for multi-faceted searches. Repository operators can suggest their infrastructures to be listed via a simple application form. A repository is indexed when the minimum requirements are met, i.e. mode of access to the data and repository, as well as the terms of use.
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vocabulary, registry, metadata standard, data sharing, FASEB list
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lists: Academic Seismic Portal at UTIG
lists: National Addiction and HIV Data Archive Program (NAHDAP)
lists: Alaska Climate Research Center
lists: MINT
lists: Internet Archive
lists: MatrixDB
lists: Animal QTLdb
lists: MPIDB
lists: BeetleBase
lists: Conserved Domain Database
lists: NeuroMorpho.Org
lists: Marine Geoscience Data System
lists: Cell Centered Database
lists: dbMHC
lists: Human Mortality Database
lists: UniProt
lists: Ligand-Gated Ion Channel Database
lists: EcoGene
lists: NCBI Genome
lists: ESTHER
lists: Genomes Online Database
lists: Gramene
lists: American FactFinder
lists: Human Proteinpedia
lists: IMGT/HLA
lists: Influenza Virus Resource
lists: DOE Joint Genome Institute
lists: MetaCrop
lists: ISPS Data Archive
lists: MorphBank
lists: miRBase
lists: Inter-university Consortium for Political and Social Research (ICPSR)
lists: Mouse Phenome Database (MPD)
lists: MorphoBank
lists: dbVar
lists: Open Science Framework
lists: TalkBank
lists: Nucleic Acid Database
lists: NCBI Taxonomy
lists: NCBI Protein Database
lists: PHI-base
lists: Alberta Geological Survey
lists: Protein Clusters
lists: Reactome
lists: Cell Image Library (CIL)
lists: eyeMoviePedia
lists: ALLBUS - German General Social Survey
lists: TPA
lists: Agency for Healthcare Research and Quality
lists: Alaska Satellite Facility
lists: Current German Weather Stations
lists: NCBI Structure
lists: BOLD
lists: PDBe - Protein Data Bank in Europe
lists: FishBase
lists: Nucleotide database
lists: NCBI BioSystems Database
lists: SGD
lists: Data.gov
lists: RHEA
lists: European Bioinformatics Institute
lists: NCBI Probe
lists: NCBI Nucleotide
lists: Database of Genomic Variants Archive (DGVa)
lists: NCBI Popset
lists: Whole Brain Atlas
lists: EMAGE Gene Expression Database
lists: Limited Access Datasets From NIMH Clinical Trials
lists: Tree of Life Web Project
lists: TreeBASE
lists: UCSC Genome Browser
lists: UniPROBE
lists: Crystallography Open Database (COD)
lists: National Archive of Computerized Data on Aging (NACDA)
lists: EOL - Encyclopedia of Life
lists: VectorBase
lists: caArray
lists: NCBI Epigenomics
lists: GWAS Central
lists: QTL Archive
lists: Proteome Commons
lists: XNAT Central
lists: 4TU.Datacentrum
lists: Amazon Web Services Public Data Sets
lists: ChemSpider
lists: DataStaR
lists: Rat Genome Database (RGD)
lists: Atlas of Living Australia
lists: Electron Microscopy Data Bank at PDBe (MSD-EBI)
lists: Phytozome
lists: FlyBase
lists: MaizeGDB
lists: Tuberculosis Database
lists: InterPro
lists: UNAVCO
lists: The Human Protein Atlas
lists: InnateDB
lists: UniSTS
lists: Launchpad
lists: Surveillance Epidemiology and End Results
lists: FAOSTAT
lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database
lists: HIstome: The Histone Infobase
lists: HPRD - Human Protein Reference Database
lists: Biological General Repository for Interaction Datasets (BioGRID)
lists: INFEVERS
lists: Reciprocal Net
lists: Africa Centre for Health and Population Studies
lists: BeeBase
lists: Biodiversity Heritage Library
lists: Databrary
lists: ACADIS Gateway
lists: ACEpepDB
lists: AIMS Data Centre
lists: ALADDIN
lists: ASTER
lists: Access to Archival Databases
lists: AidData
lists: Alaska Ocean Observing System
lists: J. Craig Venter Institute
lists: Wellcome Trust Sanger Institute; Hinxton; United Kingdom
lists: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
lists: myExperiment
lists: BioModels
lists: Addgene
lists: Antarctic and Southern Ocean Data Portal
lists: OpenTopography
lists: National Snow and Ice Data Center
lists: Biological Magnetic Resonance Data Bank (BMRB)
lists: dbSNP
lists: Ensembl
lists: DNA DataBank of Japan (DDBJ)
lists: Entrez Gene
lists: Zebrafish Information Network (ZFIN)
lists: GitHub
lists: DrugBank
lists: NCBI database of Genotypes and Phenotypes (dbGap)
lists: Gene Expression Nervous System Atlas
lists: SumsDB
lists: GenBank
lists: GermOnline
lists: HGNC
lists: Greengenes
lists: Neuroscience Information Framework
lists: HomoloGene
lists: ArrayExpress
lists: JASPAR
lists: WormBase
lists: Database of Interacting Proteins (DIP)
lists: EMDataResource.org
lists: ResearchCompendia
lists: Proteomics Identifications (PRIDE)
lists: RefSeq
lists: FAIRsharing
lists: PubChem
lists: FigShare
lists: UniGene
lists: NIMH Data Archive
lists: TAIR
lists: NCBI BioProject
lists: SMD
lists: OpenNeuro
lists: SoyBase
lists: Beta Cell Biology Consortium
lists: Biomedical Informatics Research Network
lists: Dryad Digital Repository
lists: Atlantic Canada Conservation Data Centre
lists: Agri-environmental Research Data Repository
lists: Australian Antarctic Data Centre
lists: Antibody Registry
lists: Mouse Genome Informatics (MGI)
lists: European Nucleotide Archive (ENA)
lists: NIDDK Central Repository
lists: GigaScience
lists: PeptideAtlas
lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation
lists: IntAct
lists: fMRI Data Center
lists: Gene Expression Omnibus
lists: Data and Specimen Hub (NICHD DASH)
lists: NIDA Data Share
lists: The NINDS Human Cell and Data Repository (NHCDR)
lists: Microphysiology Systems Database
lists: Dataverse Network Project
lists: Mendeley
lists: Vivli
lists: Metabolomics Workbench
lists: Qualitative Data Repository
lists: Protocols.io
lists: ZENODO
lists: STRENDA
lists: Code Ocean
lists: Brain Image Library
lists: German Collection of Microorganisms and Cell Cultures
lists: INPTDAT
lists: DataONE
lists: GBIF - Global Biodiversity Information Facility
lists: Lamont-Doherty Core Repository
lists: CaltechDATA
lists: Synapse
lists: Incorporated Research Institutions for Seismology
lists: Cancer Imaging Archive (TCIA)
lists: Mendeley Data
lists: UK Data Archive
lists: GigaDB
lists: PhysioNet
lists: Project Data Sphere
lists: Influenza Research Database (IRD)
lists: Simtk.org
lists: ResearchGate
lists: Virus Pathogen Resource (ViPR)
lists: Cambridge Structural Data Base
lists: 4TU.ResearchData
lists: Aperta Turkey Open Archive
lists: Polar Data Catalogue
lists: Arch
lists: Australian Data Archive
lists: Australian Ocean Data Network
lists: Barbara A. Mikulski Archive for Space Telescopes
lists: Aston Data Explorer
lists: Birkbeck Research Data
lists: B2SHARE Eudat
lists: BioHeritage National Science Challenge Data Repository
lists: Bolin Centre Database
lists: Brown Digital Repository
is listed by: FORCE11
is related to: U.S. Census Bureau
is related to: Rat Genome Database (RGD)
is related to: ResearchCompendia
has parent organization: Humboldt University of Berlin; Berlin; Germany
has parent organization: Karlsruhe Institute of Technology; Karlsruhe; Germany
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DFG |
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The community can contribute to this resource |
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nlx_152589 |
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SCR_006782 |
Registry of Research Data Repositories, re3data.org: Registry of Research Data Repositories, re3data |
2026-08-01 12:09:57 |
76 |
INFEVERS
Resource Report
Resource Website
10+ mentions
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INFEVERS (RRID:SCR_007738)
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Infevers
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data repository, data or information resource, storage service resource, service resource, data set
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Registry for Familial Mediterranean Fever (FMF) and hereditary inflammatory disorders mutations. As of 2014, it includes twenty genes including: MEFV, MVK, TNFRSF1A, NLRP3, NOD2, PSTPIP1, LPIN2 and NLRP7, and contains over 1338 sequence variants. Confidential data, simple and complex alleles are accepted. For each gene, a menu offers: 1) a tabular list of the variants that can be sorted by several parameters; 2) a gene graph providing a schematic representation of the variants along the gene; 3) statistical analysis of the data according to the phenotype, alteration type, and location of the mutation in the gene; 4) the cDNA and gDNA sequences of each gene, showing the nucleotide changes along the sequence, with a color-based code highlighting the gene domains, the first ATG, and the termination codon; and 5) a download menu making all tables and figures available for the users, which, except for the gene graphs, are all automatically generated and updated upon submission of the variants. The entire database was curated to comply with the HUGO Gene Nomenclature Committee (HGNC) and HGVS nomenclature guidelines, and wherever necessary, an informative note was provided.
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sequence variant, mutation, allele, genetics, dna, rna, protein, disease, heredity, inflammation, gene, function, phenotype, complex allele, simple allele, exon, intron, cdna sequence, genomic sequence, gdna, FASEB list
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is listed by: re3data.org
is related to: Human Genome Variation Society
is related to: HGNC
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Familial Mediterranean Fever, Auto-inflammatory Disorder, Hereditary Auto-inflammatory Disorder |
European Union |
PMID:18409191
PMID:15300846
PMID:12520003 |
Acknowledgement required, Free, Public |
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nif-0000-03022, r3d100010548 |
http://fmf.igh.cnrs.fr/infevers, https://doi.org/10.17616/R3B61B |
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SCR_007738 |
Internet Fevers |
2026-08-03 09:33:40 |
37 |
Rat Gene Symbol Tracker
Resource Report
Resource Website
10+ mentions
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Rat Gene Symbol Tracker (RRID:SCR_003261)
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RGST
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data or information resource, database
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THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone., documented September 2, 2016. Database for defining official rat gene symbols. It includes rat gene symbols from three major sources: the Rat Genome Database (RGD), Ensembl, and NCBI-Gene. All rat symbols are compared with official symbols from orthologous human genes as specified by the Human Gene Nomenclature Committee (HGNC). Based on the outcome of the comparisons, a rat gene symbol may be selected. Rat symbols that do not match a human ortholog undergo a strict procedure of comparisons between the different rat gene sources as well as with the Mouse Genome Database (MGD). For each rat gene this procedure results in an unambiguous gene designation. The designation is presented as a status level that accompanies every rat gene symbol suggested in the database. The status level describes both how a rat symbol was selected, and its validity. Rat Gene Symbol Tracker approves rat gene symbols by an automatic procedure. The rat genes are presented with links to RGD, Ensembl, NCBI Gene, MGI and HGNC. RGST ensures that each acclaimed rat gene symbol is unique and follows the guidelines given by the RGNC. To each symbol a status level associated, describing the gene naming process.
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gene, orthology, naming, gene symbol, nomenclature, human, mouse
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is related to: Rat Genome Database (RGD)
is related to: Entrez Gene
is related to: Ensembl
is related to: Mouse Genome Informatics (MGI)
is related to: HGNC
has parent organization: RatMap
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Swedish MRC ;
Nilsson-Ehle Foundation ;
Sven and Lilly Lawski Foundation ;
Erik Philip-Sorensen Foundation ;
Wilhelm and Martina Lundgren Research Foundation ;
SWEGENE Foundation |
PMID:18215257 |
THIS RESOURCE IS NO LONGER IN SERVICE |
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nif-0000-31426 |
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SCR_003261 |
RGST (Rat Gene Symbol Tracker), RGST - Rat Gene Symbol Tracker |
2026-08-03 09:32:16 |
14 |
VGNC
Resource Report
Resource Website
10+ mentions
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VGNC (RRID:SCR_017514)
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service resource, data or information resource, database
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Software resource for vertebrate gene nomenclature. Database of gene symbols. Coordinates with vertebrate nomenclature committees, MGNC (mouse), RGNC (rat), CGNC (chicken), AGNC (Anole green lizard), XNC (Xenopus frog) and ZNC (zebrafish), to ensure genes are named in line with their human homologs.
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Vertebrate, gene, nomenclature, data, symbol
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is related to: HGNC
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NHGRI U24 HG003345;
Wellcome Trust |
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Free, Freely available |
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SCR_017514 |
Vertebrate Gene Nomenclature Committee |
2026-08-03 09:36:39 |
13 |
University of Cambridge School of Clinical Medicine; Cambridge; United Kingdom
Resource Report
Resource Website
1+ mentions
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University of Cambridge School of Clinical Medicine; Cambridge; United Kingdom (RRID:SCR_010682)
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university
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School of Clinical Medicine is medical school of University of Cambridge in England.
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has parent organization: University of Cambridge; Cambridge; United Kingdom
is parent organization of: ProMPT - Prostate Cancer Mechanisms of Progression and Treatment
is parent organization of: HGNC
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nlx_143541 |
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SCR_010682 |
University of Cambridge School of Clinical Medicine |
2026-08-01 12:03:55 |
1 |
Nowomics
Resource Report
Resource Website
1+ mentions
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Nowomics (RRID:SCR_013766)
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software resource
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A web application that allows users to track new biomedical papers from the PubMed database. Users can search for articles concerning genes, species, disease, techniques, and other related topics and create a personalized Newsfeed related to bookmarked papers. New articles are also displayed in Newsfeed format.
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web application, research, PubMed, articles
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uses: PubMed
uses: Mendeley
uses: Entrez Gene
uses: HGNC
uses: MeSH
uses: HomoloGene
is listed by: Connected Researchers
is related to: Connected Researchers
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free, public |
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SCR_013766 |
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2026-08-01 12:04:53 |
1 |
Debian
Resource Report
Resource Website
50+ mentions
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Debian (RRID:SCR_006638)
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Debian
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database, source code, software repository, data or information resource, software resource
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Debian is Linux distribution composed of free and open source software, developed by community supported Debian Project, which was established by Ian Murdock on August 16, 1993.Debian comes with over 59000 packages (precompiled software that is bundled up in nice format for easy installation on your machine), package manager (APT), and other utilities that make it possible to manage thousands of packages on thousands of computers as easily as installing single application.
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operating system, software package, FASEB list
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lists: GUARDD
lists: FACS
lists: SNAVI
lists: Fusion Analyser
lists: GEOquery
lists: MIMOSA
lists: RNAcontext
lists: AffyRNADegradation
lists: Patchwork
lists: GraBCas
lists: GENIE3
lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks
lists: Megraft
lists: PeptideProphet
lists: VARiD
lists: Flicker
lists: ARACHNE
lists: Quant
lists: riboPicker
lists: cn.FARMS
lists: ProteinProphet
lists: dbSTS
lists: flowPeaks
lists: SODOCK
lists: PEPPER
lists: POPBAM
lists: Micro-Analyzer
lists: MuTect
lists: Mfuzz
lists: PGS
lists: TAPyR
lists: ContEst
lists: FPSAC
lists: FlipFlop
lists: SRMA
lists: Pindel
lists: PhenoFam
lists: DSRC
lists: SOAP
lists: TriageTools
lists: StringTie
lists: SplitSeek
lists: BLASR
lists: Bowtie
lists: Barrnap
lists: MUSCLE
lists: GimmeMotifs
lists: massiR
lists: CUDA-EC
lists: Illuminator
lists: SplicePlot
lists: SLOPE
lists: PARalyzer
lists: VAAL
lists: BreakSeq
lists: ProGlycProt
lists: OmicsOffice for NGS SeqSolve
lists: TileQC
lists: NGSUtils
lists: QUAST
lists: GenomicTools
lists: piCALL
lists: SNPchip
lists: TALLYMER
lists: SABER
lists: wateRmelon
lists: QualiMap
lists: BFCounter
lists: ADMIXTURE
lists: OLIN
lists: DEXUS
lists: limmaGUI
lists: KAnalyze
lists: oneChannelGUI
lists: BeadDataPackR
lists: affylmGUI
lists: SAMBLASTER
lists: PyLOH
lists: fRMA
lists: CYCLE
lists: FARMS
lists: MACAT
lists: GlyProt
lists: YinOYang
lists: Sequedex
lists: DictyOGlyc
lists: ToppCluster
lists: Biocatalogue - The Life Science Web Services Registry
lists: ProbRNA
lists: HAPLOPAINTER
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: GERMLINE
lists: FACTA+.
lists: CisGenome
lists: asSeq
lists: unifiedWMWqPCR
lists: HOMOZYGOSITYMAPPER
lists: Prediction of Amyloid Structure Aggregation
lists: InterMine
lists: TANGO
lists: CQN
lists: MEME Suite - Motif-based sequence analysis tools
lists: pRESTO
lists: S-MART
lists: PhosphoSitePlus: Protein Modification Site
lists: myExperiment
lists: DINDEL
lists: Skylign
lists: PEDIGRAPH
lists: ADaCGH2
lists: CCAT
lists: AnimalTFDB
lists: TEMP
lists: CanSNPer
lists: Candida Genome Database
lists: SamSPECTRAL
lists: InteroPorc
lists: MetaBase
lists: Pecan
lists: cisRED: cis-regulatory element
lists: AffyPipe
lists: SHORTY
lists: BISC
lists: Pathway Commons
lists: Cake
lists: SNVer
lists: WebGeSTer DB
lists: FlyFactorSurvey
lists: ASPGD
lists: TcoF
lists: cpnDB: A Chaperonin Database
lists: ZOOM
lists: CAMERA - Collection of annotation related methods for mass spectrometry data
lists: BEETL-fastq
lists: NGSrich
lists: ShotGun
lists: Iterative Signature Algorithm
lists: SBARS
lists: SNPAAMapper
lists: Autophagy Database
lists: RUbioSeq
lists: COSMIC - Catalogue Of Somatic Mutations In Cancer
lists: EchoBASE
lists: QualitySNPng
lists: Pathview
lists: pymzML
lists: RopeBWT2
lists: ExomeDepth
lists: NetPathMiner
lists: leeHom
lists: PurBayes
lists: libCSAM
lists: SuperPred: Drug classification and target prediction
lists: HGNC
lists: Coding Potential Calculator
lists: T3DB
lists: CPTRA
lists: BioNumbers
lists: GATE
lists: ProRata
lists: GreenPhylDB
lists: BREAKDANCER
lists: GeneFisher
lists: tweeDEseq
lists: HYDEN
lists: Eukaryotic Linear Motif
lists: Primer3Plus
lists: MethylAid
lists: Triplex
lists: Distant Regulatory Elements
lists: hot scan
lists: MFEprimer
lists: Proteome Analyst Specialized Subcellular Localization Server
lists: mrsFAST
lists: BioJS
lists: FastSNP
lists: Gene Set Enrichment Analysis
lists: Pipeliner
lists: ms lims
lists: GenePattern
lists: rBiopaxParser
lists: QDNAseq
lists: MutDB
lists: Piano
lists: NovelSeq
lists: MAGE-TAB
lists: Database of Interacting Proteins (DIP)
lists: Weighted Gene Co-expression Network Analysis
lists: Blood Group Antigen Gene Mutation Database
lists: drFAST
lists: pairheatmap
lists: MiST - Microbial Signal Transduction database
lists: AltAnalyze - Alternative Splicing Analysis Tool
lists: SplicingCompass
lists: deFuse
lists: Assembly Based ReAligner
lists: ggbio
lists: miR-PREFeR
lists: ALDEx2
lists: HTqPCR
lists: NanoStringNorm
lists: T-profiler
lists: Snakemake
lists: jmzTab
lists: MIPgen
lists: Bpipe
lists: PoPoolation
lists: L-Measure
lists: MultiPhen
lists: PheWAS R Package
lists: InsertionMapper
lists: Quantitative Enrichment of Sequence Tags
lists: INMEX
lists: Segway - a way to segment the genome
lists: SeWeR - SEquence analysis using WEb Resources
lists: TagDust
lists: BSRD
lists: DER Finder
lists: Stem Cell Discovery Engine
lists: Kdetrees
lists: Tree and reticulogram REConstruction
lists: BioPig
lists: NCBI BioSystems Database
lists: Distributed String Mining Framework
lists: NEWT
lists: PILGRM
lists: Selectome: a Database of Positive Selection
lists: SVMerge
lists: Parseq
lists: SVseq
lists: Small Molecule Pathway Database
lists: miRNAKey
lists: DELLY
lists: Apo and Holo structures DataBase
lists: BioSample Database at EBI
lists: MetaPhyler
lists: MG-RAST
lists: SLIQ
lists: SOPRA
lists: Information Hyperlinked Over Proteins
lists: AmphoraNet
lists: SINA
lists: SSPACE
lists: Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets
lists: STING Report
lists: G-BLASTN
lists: RNA-eXpress
lists: MethPipe
lists: SoyBase
lists: Strelka2
lists: RUM
lists: SPOT - Biological prioritization after a SNP association study
lists: VFS
lists: PHAge Search Tool
lists: MLTreeMap
lists: SEECER
lists: GeneTalk
lists: ERANGE
lists: rQuant
lists: NCBO Annotator
lists: ShoRAH
lists: Yabi
lists: ORMAN
lists: FusionMap
lists: CoPub
lists: Scripture
lists: SolexaQA
lists: Kismeth
lists: EMAGE Gene Expression Database
lists: SAMStat
lists: Knime4Bio
lists: Bis-SNP
lists: GobyWeb
lists: Jellyfish
lists: PRINSEQ
lists: PASS
lists: GSNAP
lists: SOAPaligner/soap2
lists: MethylViewer
lists: READSCAN
lists: DistMap
lists: MicrobesOnline
lists: mrFAST
lists: FLASH
lists: TIGRFAMS
lists: TMA Navigator
lists: Bambino
lists: TreQ
lists: SeqMap
lists: SeqTrace
lists: TRANSFAC
lists: GoFish
lists: MethylomeDB
lists: CLIPZ
lists: SerbGO
lists: ToppGene Suite
lists: ngsTools
lists: PePr
lists: DMRforPairs
lists: CharProtDB: Characterized Protein Database
lists: Expression Profiler
lists: SNPsandGO
lists: GoSurfer
lists: WEGO - Web Gene Ontology Annotation Plot
lists: SOURCE
lists: Stampy
lists: DiseaseMeth
lists: BLESS
lists: GraphProt
lists: GoPubMed
lists: ccPDB - Compilation and Creation of datasets from PDB
lists: Europe PubMed Central
lists: Dr.VIS - Human Disease-Related Viral Integration Sites
lists: DOMMINO - Database Of MacroMolecular INteractiOns
lists: DBETH - Database for Bacterial ExoToxins for Humans
lists: VirHostNet: Virus-Host Network
lists: GWASdb
lists: HFV Database
lists: HotRegion - A Database of Cooperative Hotspots
lists: eQuilibrator
lists: FunTree
lists: Cascade
lists: 959 Nematode Genomes
lists: ICEberg
lists: IndelFR - Indel Flanking Region Database
lists: IDEAL - Intrinsically Disordered proteins with Extensive Annotations and Literature
lists: ProRepeat
lists: NRG-CING
lists: InterEvol database
lists: MMMDB - Mouse Multiple tissue Metabolome DataBase
lists: Newtomics
lists: MIPModDB
lists: DistiLD - Diseases and Traits in LD
lists: Polbase
lists: UMD-BRCA1/ BRCA2 databases
lists: ScerTF
lists: VIRsiRNAdb
lists: ProPortal
lists: OGEE - Online GEne Essentiality database
lists: RecountDB
lists: PRED-GPCR
lists: RNA CoSSMos
lists: PRED-SIGNAL
lists: SNPedia
lists: SpliceDisease
lists: HMM-TM
lists: deepSNV
lists: OMPdb
lists: PRED-LIPO
lists: VICUNA
lists: Predictive Networks
lists: COEUS
lists: GeneTrail
lists: epigenomix
lists: ADGO
lists: SRAdb
lists: QCGWAS
lists: Flycircuit
lists: MouseBook
lists: Immune Epitope Database and Analysis Resource (IEDB)
lists: SitEx
lists: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
lists: MSIsensor
lists: TSSer
lists: ATRHUNTER
lists: Phytozome
lists: Decombinator
lists: ViralZone
lists: COLT-Cancer
lists: Gene Expression Database
lists: BEDTools
lists: waviCGH
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lists: Phylogeny.fr
lists: PRICE
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lists: RADAR-base
lists: RiboTaper
lists: SAMMate
lists: rna-stability
lists: RightField
lists: SASGENE
lists: RNAplex
lists: runBioSimulations
lists: ResponseNet
lists: SilkDB
lists: Scansite
lists: Research-tested Intervention Programs (RTIPs)
lists: sapFinder
lists: SeqtrimNEXT
lists: RNA Virus Database
lists: SALT
lists: SEEK
lists: Seqtk
lists: REDfly Regulatory Element Database for Drosophilia
lists: SAFA Footprinting Software
lists: SeqExpress
lists: ROMPREV
lists: SeqSaw
lists: SeqEM
lists: SHELX
lists: rSeq
lists: SHARCGS
lists: rnaSPAdes
lists: SimSeq
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lists: SNPTEST
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lists: Solas
lists: SoupX
lists: STEPS
lists: FASTSLINK
lists: SpliceMap
lists: StSNP
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lists: Sybil
lists: TAPIR: target prediction for plant microRNAs
lists: SWISS-2DPAGE
lists: SISSRs
lists: T-lex
lists: SUMSTAT
lists: TAGS
lists: Spot
lists: TDR Targets Database
lists: TDT-PC
lists: SpoTyping
lists: SynTView
lists: SynergyFinder
lists: TRAL
lists: SPIKE
lists: Transporter Classification Database
lists: TransmiR
lists: TASSEL
lists: SYFPEITHI: A Database for MHC Ligands and Peptide Motifs
lists: FLUX CAPACITOR
lists: TB PORTALS
lists: TAndem Splice Site DataBase
lists: VirusHunter
lists: topGO
lists: TMAJ
lists: ApiDB ToxoDB
lists: tradeSeq
lists: TreeDyn
lists: Trans-ABySS
lists: IQ-TREE
lists: Biological General Repository for Interaction Datasets (BioGRID)
lists: Trowel
lists: TomoMiner
lists: UTRdb/UTRsite
lists: TWOLOC
lists: V-Phaser 2
lists: TropGENE DB
lists: Trim Galore
lists: TRACESPipe
lists: Gene Index Project
lists: Tool recommender system in Galaxy
lists: WEIGHTED FDR
lists: UTGB Toolkit
lists: xia2 pipeline
lists: USeq
lists: TRiCoLOR
lists: UniParc
lists: VAAST
lists: variancePartition
lists: VirusSeq
lists: Webproanalyst
lists: XPN
lists: WSsas - Web Service for the SAS tool
lists: UNAFold
lists: zUMIs
lists: VaDiR
lists: Yeast Search for Transcriptional Regulators And Consensus Tracking
lists: Vector Alignment Search Tool
lists: Zebrafish Information Network (ZFIN)
lists: YASARA
lists: Vmatch
lists: VFDB - Virulence Factors of Bacterial Pathogens
lists: Xenbase
lists: Visualization and Analysis of Networks containing Experimental Data (VANTED)
lists: VisSR
lists: AutoDock
lists: dbEST
lists: DESeq2
lists: DNA DataBank of Japan (DDBJ)
lists: FASTX-Toolkit
lists: SUP
lists: Trimmomatic
lists: VIPERdb
lists: ABySS
lists: AdapterRemoval
lists: Alien-hunter
lists: ALTree
lists: Integrative Genomics Viewer
lists: RDKit: Open-Source Cheminformatics Software
lists: Acacia
lists: AMAP
lists: Anfo
lists: Aragorn
lists: Arden
lists: Ariba
lists: ART
lists: Augustus
lists: Axe
lists: Baitfisher
lists: BALLView
lists: BEAGLE
lists: BEDOPS
lists: eXpress
lists: BOXSHADE 3.21
lists: Cassiopee
lists: Cdbfasta
lists: Circlator
lists: Clearcut
lists: Clonalframe
lists: ClonalOrigin
lists: Computational Morphometry Toolkit
lists: Concavity
lists: CRAC
lists: cwltool
lists: Daligner
lists: Datamash
lists: DNACLUST
lists: DWGSIM
lists: Eigensoft
lists: EMBOSS
lists: ESTScan
lists: EULER-SR
lists: FASTLINK
lists: FigTree
lists: fitGCP
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lists: Gamgi
lists: GASiC
lists: Ghemical
lists: GIIRA
lists: Grinder
lists: Gwyddion
lists: Hmmer
lists: HTQC
lists: IDBA-UD
lists: ImageJ
lists: Infernal
lists: PyMOL
lists: GenABEL
lists: Biopython
lists: QuorUM
lists: Prodigal
lists: QuteMol
lists: PRESTO: Genetic Association Analysis Software
lists: Probalign
lists: Computational Structural Biology Toolbox
lists: LEfSe
lists: Happy
lists: jModelTest
lists: KMC
lists: LAMARC
lists: libRoadRunner
lists: LoFreq
lists: MetaPhlAn
lists: MicrobiomeUtilities
lists: MINIMAC
lists: MIPE
lists: mothur
lists: Mugsy
lists: GNU Octave
lists: Oncofuse
lists: PBSIM
lists: PerlPrimer
lists: PHAST
lists: Picard
lists: PLINK
lists: ADEGENET
lists: phytools
lists: PSCBS
lists: R/QTL
lists: SAM
lists: vegan
lists: RepeatMasker
lists: Scythe
lists: SEER
lists: Seq-Gen
lists: SMRT-Analysis
lists: Scalable Nucleotide Alignment Program
lists: SPAdes
lists: TraceTuner
lists: Transterm
lists: TreeView
lists: Viewmol
lists: Vascular Modeling Toolkit
lists: Aegean
lists: amide
lists: Anndata
lists: ANTS - Advanced Normalization ToolS
lists: ARB project
lists: ArtificialFastqGenerator
lists: Arvados
lists: Bandage
lists: Berkeley Advanced Reconstruction Toolbox
lists: BBmap
lists: Eagle
lists: Bio-Formats
lists: BioImage Suite
lists: BioJava Project
lists: BioSig: An Imaging Bioinformatics System for Phenotypic Analysis
lists: BRAKER
lists: Bustools
lists: Computerized Anatomical Reconstruction and Editing Toolkit
lists: CellProfiler Image Analysis Software
lists: ChIPSeq Peak Finder
lists: ChromHMM
lists: Cluster
lists: Cytoscape
lists: Dazzler
lists: DCMTK: DICOM Toolkit
lists: DeepNano
lists: dinifti
lists: DICOMscope
lists: Dipy
lists: Drop-seq tools
lists: Electronic Cell Project
lists: Ecopcr
lists: Edtsurf
lists: DOMAINATRIX
lists: DOMALIGN
lists: Embassy-domsearch
lists: E-mem
lists: e-PCR
lists: Falcon
lists: Fastaq
lists: Fastqtl
lists: Ffindex
lists: FreeSurfer
lists: FSA
lists: FSL
lists: Galaxy
lists: GARLI
lists: Garlic
lists: IndelGenotyper
lists: gdpc
lists: Gemma
lists: GenomeTools
lists: Gentle
lists: GERP
lists: Gff2aplot
lists: gffread
lists: GraPhlAn
lists: Gubbins
lists: Harvest-tools
lists: HiLive
lists: Hinge
lists: ImageMagick
lists: ImageVis3D
lists: Indelible
lists: InVesalius 3
lists: IQ TREE
lists: ITK-SNAP
lists: JBrowse
lists: JIST: Java Image Science Toolkit
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lists: Mash
lists: Mesquite
lists: MetaBAT
lists: MOSAIK
lists: MRtrix
lists: Human Disease Ontology
lists: NanoFilt
lists: Object-Oriented Development Interface for NMR
lists: OpenElectrophy
lists: OpenMEEG
lists: OpenWalnut
lists: OptiType
lists: PARASAIL
lists: ParaView
lists: PhyloPhlAn
lists: Phyutility
lists: Porechop
lists: PSIPRED
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lists: pydicom
lists: PySurfer
lists: MNE software
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lists: pyxnat
lists: QIIME2
lists: RAxML Next Generation
lists: ShortRead
lists: Phangorn
lists: psych
lists: VennDiagram
lists: Recognition of Errors in Assemblies using Paired Reads
lists: RELION
lists: RStudio
lists: Salmon
lists: Scoary
lists: University of Zurich SCRM - Cell-and Tissue Biobank
lists: Short Read Sequence Typing for Bacterial Pathogens
lists: Umap
lists: VoxBo
lists: WTDBG
lists: XNAT - The Extensible Neuroimaging Archive Toolkit
lists: ABACAS
lists: AceDB
lists: LINKAGE
lists: Protein Information Resource
lists: PredictNLS
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lists: Aeskulap
lists: alleleCount
lists: assembly-stats
lists: Atropos
lists: Assemblytics
lists: Augur
lists: AxParafit
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lists: bambamc
lists: AxPcoords
lists: bamkit
lists: BAli-Phy
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lists: BBHash
lists: BCALM 2
lists: Bibus
lists: BioMAJ
lists: BioCocoa
lists: Biber
lists: BioImageXD
lists: caftools
lists: BOLT-LMM
lists: CamiTK
lists: CLI for BioMAJ
lists: CAMP
lists: CAT and BAT
lists: CHIME
lists: CDK
lists: ChromImpute
lists: CiftiLib
lists: conda-package-handling
lists: CARD
lists: CONTRAfold
lists: CodonW
lists: Change-O
lists: C Thread Pool
lists: Chemtool
lists: covtobed
lists: CTK
lists: CTDopts
lists: CTDConverter
lists: Conquest DICOM
lists: CTSim
lists: Dicom3tools
lists: Dendroscope3
lists: cyvcf2
lists: Deepbinner
lists: EDFlib
lists: EDFbrowser
lists: dicompyler
lists: EMMAX
lists: DEXTRACTOR
lists: DNApi
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lists: FreeImage
lists: Fast5 Library
lists: Entangle
lists: FFP
lists: GenomeTester4
lists: Filtlong
lists: EMBOSS explorer
lists: GfaPy
lists: GATB
lists: GCLib
lists: EpiFire
lists: HTSJDK
lists: GDCM
lists: GNUmed
lists: GraphMap2
lists: foreign
lists: Ginkgo CADx
lists: GramAlign
lists: IDeFIX
lists: ImageTooth
lists: Htscodecs
lists: IGoR
lists: iVar
lists: InsPecT
lists: Intake
lists: IgDiscover
lists: JAligner
lists: ISMRMRD
lists: JabRef
lists: Lambda
lists: Kaptive
lists: KBibTeX
lists: InSilicoSeq
lists: kineticsTools
lists: AcePerl
lists: KmerResistance
lists: Bio-EUtilities
lists: Insight Toolkit
lists: Kleborate
lists: KMA
lists: kempbasu
lists: Bio-ASN1-EntrezGene
lists: IVA
lists: Bio-Coordinate
lists: Bio-Graphics
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lists: BioD
lists: Bio-Tools-Run-Alignment-Clustalw
lists: Bio-PrimerDesigner
lists: Bioparser
lists: Edlib
lists: Bio-SamTools
lists: libdisorder
lists: libncl
lists: Bio-Tools-Run-Alignment-TCoffee
lists: Chado
lists: Bio-Tools-Phylo-PAML
lists: libGDF
lists: JLODA
lists: libdivsufsort
lists: libminc
lists: Bio-SCF
lists: Sort-Key-Top
lists: Java NeXML libraries and tools
lists: libmaus2
lists: libqes
lists: MIA
lists: libics
lists: FAST Analysis of Sequences Toolbox
lists: Libchipcard
lists: TaxonomyTree
lists: Core Wrapper
lists: Lighter
lists: SSW Library
lists: libqc++
lists: SeqLib
lists: tabixpp
lists: libStatGen
lists: ThreadPool
lists: Lucy
lists: MafFilter
lists: Metastudent
lists: Libxdf
lists: limereg
lists: Mapsembler2
lists: MAXFLOW
lists: metaBIT
lists: MacSyFinder
lists: VIGRA
lists: MCL
lists: MHAP
lists: MindTheGap
lists: Logol
lists: medicalterms
lists: mmtf-python
lists: Miniasm
lists: Tab2MAGE
lists: MView
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lists: mirtop
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lists: MicrobeGPS
lists: mPSQed
lists: mPTP
lists: SMILE
lists: Entrez Direct
lists: NW-align
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lists: Ngila
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lists: NORSp
lists: Murasaki
lists: Nextflow
lists: NCBI accession download script
lists: omegaMap
lists: NJplot
lists: NanoLyse
lists: OpenCFU
lists: NORSnet
lists: OBITools
lists: NeoBio
lists: OptimiR
lists: PartitionFinder
lists: OpenSurgSim
lists: NanoPlot
lists: NextSV
lists: OpenEMR
lists: Orthanc
lists: PAIPline
lists: Odil
lists: PHYLOViZ
lists: PlasmidSeeker
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lists: OpenIGTLink
lists: Parsnp
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lists: PiGx-RNAseq
lists: PfTools
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lists: Phyx
lists: pipasic
lists: pngquant
lists: pbcopper
lists: Patristic
lists: PLIP
lists: Placnet
lists: PhySamp
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lists: picopore
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lists: PROFisis
lists: ProDA
lists: PRANK
lists: Cooler
lists: pyepl
lists: pssh2
lists: Plastimatch
lists: pynast
lists: psignifit
lists: python-airr
lists: Populations
lists: pyFAI
lists: python-biom-format
lists: pyranges
lists: purple
lists: PyCogent
lists: qtlreaper
lists: qcumber
lists: python-bx
lists: pyomo
lists: pycoqc
lists: Proteinortho
lists: DendroPy
lists: qtltools
lists: pyscanfcs
lists: rambo-k
lists: qcat
lists: rasmol
lists: rampler
lists: raccoon
lists: ragout
lists: rapmap
lists: quicktree
lists: Raster3D
lists: AnnotationHub
lists: Rate4Site
lists: altcdfenvs
lists: annotate
lists: biomformat
lists: Biobase
lists: affyio
lists: bridgedbr
lists: BiocGenerics
lists: biovizBase
lists: genefilter
lists: CNEr
lists: bsgenome
lists: geneplotter
lists: ctc
lists: genomicalignments
lists: go.db
lists: genomeinfodb
lists: hypergraph
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lists: mergeomics
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lists: nanostringqcpro
lists: rgsepd
lists: rcpi
lists: pcaMethods
lists: adephylo
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lists: savr
lists: tfbstools
lists: xvector
lists: ade4
lists: biwt
lists: beeswarm
lists: cmprsk
lists: alakazam
lists: bio3d
lists: Epi
lists: BoolNet
lists: DT
lists: DoseFinding
lists: itertools
lists: fitdistrplus
lists: fitbitscraper
lists: dynamicTreeCut
lists: epibasix
lists: distory
lists: forecast
lists: incidence
lists: hms
lists: nmf
lists: mediana
lists: genetics
lists: lexrankr
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lists: rotl
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lists: stringi
lists: snowfall
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lists: sra-toolkit
lists: strap-base
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lists: swarm
lists: sourmash
lists: surankco
lists: streamlit
lists: tab2mage
lists: sumaclust
lists: sweed
lists: tacg
lists: zAlign
lists: tiddit
lists: Workrave
lists: sprai
lists: VolPack
lists: XMedCon
lists: Yanosim
lists: Yanagiba
lists: libswiss-perl
lists: yaha
lists: VisIt
lists: VelvetOptimiser
lists: variation graph
lists: vcfanno
lists: VarMatch
lists: VirulenceFinder
lists: CCS
lists: VADR
lists: VARNA
lists: VMD
lists: FISH
lists: trace2dbEST
lists: TREE-PUZZLE
lists: umis
lists: Trinculo
lists: toil
lists: TRANSIT
lists: toppred
lists: Unicycler
lists: TM-align
lists: Tn-seq explorer
lists: Tombo
lists: TopHat-Recondition
is related to: FreeContact
is parent organization of: neurodebian
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Free, Freely available |
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nlx_151598 |
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SCR_006638 |
Debian - The universal operating system, Debian GNU/Linux |
2026-08-03 09:33:11 |
50 |
bio.tools
Resource Report
Resource Website
10+ mentions
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bio.tools (RRID:SCR_014695)
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database, catalog, software repository, data or information resource, software resource
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Community registry of software tools and data resources for life sciences. Tools and data services registry as community effort to document bioinformatics resources. Registry of software and databases, facilitating researchers from across spectrum of biological and biomedical science. When adding tools to registry, information including URL, contact information, resource function, field its relevant in, and its primary publication are required. Development is supported by ELIXIR - the European Infrastructure for Biological Information.
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Registry, software registry, biological tool, data services registry, services discovery portal, bio.tools
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lists: FACS
lists: Fusion Analyser
lists: AffyRNADegradation
lists: GUARDD
lists: GEOquery
lists: RNAcontext
lists: Patchwork
lists: SODOCK
lists: MIMOSA
lists: GraBCas
lists: SNAVI
lists: GENIE3
lists: Megraft
lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks
lists: PeptideProphet
lists: Quant
lists: VARiD
lists: ProteinProphet
lists: Flicker
lists: ARACHNE
lists: Micro-Analyzer
lists: riboPicker
lists: dbSTS
lists: POPBAM
lists: flowPeaks
lists: cn.FARMS
lists: Sequence Search and Alignment by Hashing Algorithm
lists: SAMBLASTER
lists: Pindel
lists: Mfuzz
lists: TAPyR
lists: ContEst
lists: PGS
lists: PEPPER
lists: FPSAC
lists: FlipFlop
lists: ProGlycProt
lists: MuTect
lists: TriageTools
lists: BLASR
lists: DSRC
lists: SRMA
lists: Bowtie
lists: StringTie
lists: PhenoFam
lists: SOAP
lists: SplitSeek
lists: MUSCLE
lists: SplicePlot
lists: Illuminator
lists: GimmeMotifs
lists: Skylign
lists: BreakSeq
lists: Barrnap
lists: SLOPE
lists: CUDA-EC
lists: QualiMap
lists: massiR
lists: OmicsOffice for NGS SeqSolve
lists: QUAST
lists: GenomicTools
lists: NGSUtils
lists: TileQC
lists: Sequedex
lists: PARalyzer
lists: BFCounter
lists: TALLYMER
lists: SNPchip
lists: VAAL
lists: ProbRNA
lists: ADMIXTURE
lists: SABER
lists: piCALL
lists: CYCLE
lists: limmaGUI
lists: DEXUS
lists: KAnalyze
lists: BeadDataPackR
lists: wateRmelon
lists: NGSrich
lists: OLIN
lists: fRMA
lists: MACAT
lists: affylmGUI
lists: DictyOGlyc
lists: GlyProt
lists: CisGenome
lists: ToppCluster
lists: AnimalTFDB
lists: oneChannelGUI
lists: YinOYang
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: asSeq
lists: FARMS
lists: GERMLINE
lists: unifiedWMWqPCR
lists: HAPLOPAINTER
lists: Biocatalogue - The Life Science Web Services Registry
lists: HOMOZYGOSITYMAPPER
lists: MetaBase
lists: PyLOH
lists: InterMine
lists: myExperiment
lists: pRESTO
lists: TANGO
lists: Prediction of Amyloid Structure Aggregation
lists: PhosphoSitePlus: Protein Modification Site
lists: CCAT
lists: BREAKDANCER
lists: FACTA+.
lists: PEDIGRAPH
lists: CQN
lists: CanSNPer
lists: SamSPECTRAL
lists: TEMP
lists: MEME Suite - Motif-based sequence analysis tools
lists: SNPAAMapper
lists: Pecan
lists: InteroPorc
lists: AffyPipe
lists: ADaCGH2
lists: DINDEL
lists: ASPGD
lists: Candida Genome Database
lists: BISC
lists: PurBayes
lists: SNVer
lists: Cake
lists: S-MART
lists: SHORTY
lists: Pathway Commons
lists: TcoF
lists: BEETL-fastq
lists: SBARS
lists: cpnDB: A Chaperonin Database
lists: cisRED: cis-regulatory element
lists: FlyFactorSurvey
lists: pymzML
lists: EchoBASE
lists: Blood Group Antigen Gene Mutation Database
lists: WebGeSTer DB
lists: RUbioSeq
lists: COSMIC - Catalogue Of Somatic Mutations In Cancer
lists: MethylAid
lists: ExomeDepth
lists: ZOOM
lists: Iterative Signature Algorithm
lists: ShotGun
lists: Pathview
lists: T3DB
lists: Autophagy Database
lists: rBiopaxParser
lists: QualitySNPng
lists: CAMERA - Collection of annotation related methods for mass spectrometry data
lists: libCSAM
lists: RopeBWT2
lists: NetPathMiner
lists: BioNumbers
lists: leeHom
lists: tweeDEseq
lists: ProRata
lists: Coding Potential Calculator
lists: CPTRA
lists: MFEprimer
lists: Distant Regulatory Elements
lists: HGNC
lists: GATE
lists: SuperPred: Drug classification and target prediction
lists: hot scan
lists: AltAnalyze - Alternative Splicing Analysis Tool
lists: Primer3Plus
lists: pairheatmap
lists: BioJS
lists: ms lims
lists: Eukaryotic Linear Motif
lists: Proteome Analyst Specialized Subcellular Localization Server
lists: HYDEN
lists: drFAST
lists: GeneFisher
lists: GreenPhylDB
lists: MiST - Microbial Signal Transduction database
lists: Pipeliner
lists: Gene Set Enrichment Analysis
lists: Piano
lists: Weighted Gene Co-expression Network Analysis
lists: FastSNP
lists: Triplex
lists: mrsFAST
lists: GenePattern
lists: NovelSeq
lists: QDNAseq
lists: MutDB
lists: SplicingCompass
lists: deFuse
lists: Database of Interacting Proteins (DIP)
lists: Assembly Based ReAligner
lists: MAGE-TAB
lists: ggbio
lists: miR-PREFeR
lists: NanoStringNorm
lists: MIPgen
lists: HTqPCR
lists: Parseq
lists: T-profiler
lists: Bpipe
lists: jmzTab
lists: L-Measure
lists: Snakemake
lists: PoPoolation
lists: MultiPhen
lists: PheWAS R Package
lists: Quantitative Enrichment of Sequence Tags
lists: ALDEx2
lists: INMEX
lists: InsertionMapper
lists: BSRD
lists: SeWeR - SEquence analysis using WEb Resources
lists: Segway - a way to segment the genome
lists: Stem Cell Discovery Engine
lists: TagDust
lists: Kdetrees
lists: Tree and reticulogram REConstruction
lists: NEWT
lists: DER Finder
lists: BioPig
lists: Selectome: a Database of Positive Selection
lists: Distributed String Mining Framework
lists: PILGRM
lists: Apo and Holo structures DataBase
lists: MLTreeMap
lists: MG-RAST
lists: miRNAKey
lists: SVseq
lists: Small Molecule Pathway Database
lists: Information Hyperlinked Over Proteins
lists: SVMerge
lists: BioSample Database at EBI
lists: MetaPhyler
lists: SOPRA
lists: NCBI BioSystems Database
lists: SLIQ
lists: G-BLASTN
lists: SSPACE
lists: AmphoraNet
lists: NCBI Structure: Cn3D
lists: DELLY
lists: RUM
lists: STING Report
lists: SoyBase
lists: SINA
lists: Strelka2
lists: RNA-eXpress
lists: Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets
lists: VFS
lists: ShoRAH
lists: READSCAN
lists: ERANGE
lists: GeneTalk
lists: ORMAN
lists: SEECER
lists: Scripture
lists: SPOT - Biological prioritization after a SNP association study
lists: NCBO Annotator
lists: CoPub
lists: SolexaQA
lists: PHAge Search Tool
lists: Knime4Bio
lists: MethPipe
lists: Bis-SNP
lists: GobyWeb
lists: EMAGE Gene Expression Database
lists: FusionMap
lists: Yabi
lists: GSNAP
lists: rQuant
lists: MethylViewer
lists: DistMap
lists: PASS
lists: mrFAST
lists: Kismeth
lists: Stampy
lists: TreQ
lists: FLASH
lists: SAMStat
lists: PRINSEQ
lists: MethylomeDB
lists: SOAPaligner/soap2
lists: TMA Navigator
lists: TRANSFAC
lists: SeqMap
lists: Bambino
lists: MicrobesOnline
lists: DMRforPairs
lists: TIGRFAMS
lists: CLIPZ
lists: SNPsandGO
lists: ToppGene Suite
lists: SeqTrace
lists: GoSurfer
lists: Jellyfish
lists: GoFish
lists: WEGO - Web Gene Ontology Annotation Plot
lists: ngsTools
lists: GraphProt
lists: SerbGO
lists: GoPubMed
lists: ccPDB - Compilation and Creation of datasets from PDB
lists: DOMMINO - Database Of MacroMolecular INteractiOns
lists: SOURCE
lists: DistiLD - Diseases and Traits in LD
lists: PePr
lists: Expression Profiler
lists: eQuilibrator
lists: DiseaseMeth
lists: Dr.VIS - Human Disease-Related Viral Integration Sites
lists: FunTree
lists: DBETH - Database for Bacterial ExoToxins for Humans
lists: BLESS
lists: GWASdb
lists: HFV Database
lists: IndelFR - Indel Flanking Region Database
lists: MIPModDB
lists: Europe PubMed Central
lists: CharProtDB: Characterized Protein Database
lists: IDEAL - Intrinsically Disordered proteins with Extensive Annotations and Literature
lists: MMMDB - Mouse Multiple tissue Metabolome DataBase
lists: ICEberg
lists: VirHostNet: Virus-Host Network
lists: Cascade
lists: Polbase
lists: VIRsiRNAdb
lists: 959 Nematode Genomes
lists: OGEE - Online GEne Essentiality database
lists: ProPortal
lists: SNPedia
lists: Newtomics
lists: HotRegion - A Database of Cooperative Hotspots
lists: SitEx
lists: ScerTF
lists: HMM-TM
lists: NRG-CING
lists: PRED-LIPO
lists: InterEvol database
lists: SpliceDisease
lists: RNA CoSSMos
lists: deepSNV
lists: PRED-GPCR
lists: RecountDB
lists: VICUNA
lists: ProRepeat
lists: MouseBook
lists: COEUS
lists: Predictive Networks
lists: PRED-SIGNAL
lists: Flycircuit
lists: COLT-Cancer
lists: ATRHUNTER
lists: GeneTrail
lists: epigenomix
lists: Pseudomonas Genome Database
lists: QCGWAS
lists: TSSer
lists: UMD-BRCA1/ BRCA2 databases
lists: PomBase
lists: Phytozome
lists: OMPdb
lists: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
lists: MSIsensor
lists: GWAMA
lists: SpliceTrap
lists: ViralZone
lists: waviCGH
lists: MyHits
lists: Decombinator
lists: CAPS Database
lists: ADGO
lists: zfishbook
lists: EagleView
lists: Gene Expression Database
lists: SRAdb
lists: BEDTools
lists: IMGT/GENE-DB
lists: RamiGO
lists: canSAR
lists: IMGT/LIGM-DB
lists: PLEXdb - Plant Expression Database
lists: COHCAP
lists: DARC - Database for Aligned Ribosomal Complexes
lists: Immune Epitope Database and Analysis Resource (IEDB)
lists: AutismKB
lists: RIKEN integrated database of mammals
lists: Myrna
lists: PhenoM - Phenomics of yeast Mutants
lists: BIGpre
lists: HIstome: The Histone Infobase
lists: TriTrypDB
lists: CuticleDB
lists: Midbody, Centrosome and Kinetochore
lists: SCOP: Structural Classification of Proteins
lists: Expression Database in 4D
lists: VIDA
lists: Database of Arabidopsis Transcription Factors
lists: Atlas of Genetics and Cytogenetics in Oncology and Haematology
lists: ESEfinder 3.0
lists: agriGO
lists: Taipan
lists: AgBase
lists: Chromosome 7 Annotation Project
lists: MEROPS
lists: T1DBase
lists: Hyper Cell Line Database
lists: GenoTan
lists: VISTA Browser
lists: lobSTR
lists: Candidate Genes to Inherited Diseases
lists: VISTA Enhancer Browser
lists: Gene Array Analyzer
lists: Network Analysis, Visualization and Graphing TORonto
lists: MuSiC
lists: MfunGD - MIPS Mouse Functional Genome Database
lists: eTBlast
lists: Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD)
lists: FGDP
lists: hiPathDB - human integrated Pathway DB with facile visualization
lists: miRNEST
lists: neXtProt
lists: NetOGlyc
lists: QuasiRecomb
lists: GMAP
lists: iMir
lists: MaCH-Admix
lists: SeqBuster
lists: LegumeIP
lists: DNAtraffic
lists: MicroSNiPer
lists: Pathema
lists: BeeBase
lists: Geneious
lists: MOSCPHASER
lists: SNPinfo Web Server
lists: elastix
lists: MIRA
lists: NEBcutter
lists: CopySeq
lists: CUPSAT
lists: Atlas2
lists: ALLPATHS-LG
lists: Velvet
lists: HomSI
lists: SVDetect
lists: omiRas
lists: HMCan
lists: HapFABIA
lists: WEBLOGO
lists: ZINBA
lists: SICER
lists: kmer-SVM
lists: MAnorm
lists: Pedimap
lists: nucleR
lists: CEQer
lists: MutSig
lists: DIANA-LncBase
lists: MethMarker
lists: PeakRanger
lists: PlnTFDB
lists: CloudBurst
lists: NPS
lists: MutationTaster
lists: ProDesign
lists: OligoArray
lists: ArrayAnalysis.org
lists: PatMaN
lists: SEAL
lists: Asterias
lists: RACE
lists: RobiNA
lists: CANGS
lists: PlantTFcat
lists: LitInspector
lists: HSLPred
lists: PSAR-Align
lists: CancerResource
lists: JiffyNet
lists: ECHO
lists: GPU-Meta-Storms
lists: GenoREAD
lists: TopHat-Fusion
lists: GeneStitch
lists: FABIA
lists: CPFP
lists: MFPaQ
lists: ICPL ESIQuant
lists: easyRNASeq
lists: PREDDIMER
lists: NetCoffee
lists: SlideSort-BPR
lists: miRPlant
lists: AlienTrimmer
lists: PRIDE Converter 2
lists: SNP ratio test
lists: compomics-utilities
lists: Allim
lists: PLEK
lists: ISDTool
lists: OBI-Warp
lists: LocalAli
lists: iceLogo
lists: multiplierz
lists: AMS
lists: NGSmethDB
lists: PoolHap
lists: DNaseR
lists: Btrim
lists: COBRApy
lists: NAIL
lists: CAZy- Carbohydrate Active Enzyme
lists: A5-miseq
lists: ANNOVAR
lists: GENSCAN
lists: PhosphoSiteAnalyzer
lists: MethylCoder
lists: featureCounts
lists: LOCAS
lists: Scalpel
lists: Cell motility
lists: Mouse Genome Database
lists: CloudAligner
lists: HeurAA
lists: GSA-SNP
lists: seqMINER
lists: PolyPhen: Polymorphism Phenotyping
lists: rqubic
lists: PlantNATsDB - Plant Natural Antisense Transcripts DataBase
lists: MitoBreak
lists: Cube-DB
lists: Death Domain database
lists: Telescoper
lists: Crossbow
lists: MToolBox
lists: GENE-counter
lists: BEADS
lists: PLAN2L
lists: INCLUSive
lists: CSAR
lists: ApiDB CryptoDB
lists: MACS
lists: NNcon
lists: KAVIAR
lists: GeneSigDB
lists: psRNATarget
lists: Composition Profiler
lists: MINAS - Metal Ions in Nucleic AcidS
lists: EGSEA
lists: Crystallography and NMR System (CNS)
lists: Morpheus
lists: IUPHAR/BPS Guide to Pharmacology
lists: RAST Server
lists: ProteomicsDB
lists: SPEX2
lists: LTR_Finder
lists: SCRATCH
lists: DSAP
lists: PALEOMIX
lists: Buccaneer
lists: QuantiSNP
lists: ProtTest
lists: MultiQC
lists: GeneWise
lists: DISEASES
lists: Off-Spotter
lists: oligo
lists: 3D-footprint
lists: SC3
lists: MS-GF+
lists: TISSUES
lists: TFBS
lists: CHiCAGO
lists: Poretools
lists: Membrane Protein Explorer
lists: FATCAT
lists: Bio-tradis
lists: ALTER
lists: HISAT2
lists: MetaMapR
lists: PhyD3
lists: Exonerate
lists: primers4clades
lists: Fastml
lists: Bamtools
lists: Genesis
lists: DISULFIND
lists: EnrichmentMap
lists: LoRDEC
lists: mentha
lists: IDEPI - IDentify EPItopes
lists: Oufti
lists: FluxModeCalculator
lists: eXpression2Kinases
lists: SMAGEXP
lists: ProCon - PROteomics CONversion
lists: Lifebit Deploit
lists: TRANSIT
lists: Splicing Express
lists: Microscopy Image Browser
lists: SARTools
lists: SPICE
lists: DINIES
lists: OmicsNet
lists: ngsRelate
lists: clusterProfiler
lists: NetworkAnalyst
lists: FRETBursts
lists: Thunder STORM
lists: ANOCVA
lists: ConsensusClusterPlus
lists: CIBERSORT
lists: CCTOP
lists: scran
lists: Rsubread
lists: Heatmapper
lists: BinPacker
lists: Subread
lists: UMI-tools
lists: Goseq
lists: PRSice
lists: ScaffMatch
lists: EMBOSSMatcher
lists: JAMM
lists: CentroidFold
lists: Gigwa
lists: FastProject
lists: GeSeq
lists: ComplexHeatmap
lists: PatchDock
lists: Proovread
lists: trimAl
lists: ExPASy ABCD database
lists: shinyGEO
lists: AmoebaDB
lists: Blood Exposome Database
lists: STRUCTURE
lists: NetPhos
lists: Geneshot
lists: ProtParam Tool
lists: HiC-Pro
lists: HingeProt
lists: Mousebytes
lists: iTOL
lists: ChiCMaxima
lists: SWISS-MODEL
lists: PASTEClassifier
lists: R/qtl2
lists: FlowCal
lists: Signaling Pathways Project
lists: GPS-SUMO
lists: Roary
lists: SpydrPick
lists: ProSA-web
lists: SIGNOR
lists: MaxAlign
lists: REDIportal
lists: EpiModel
lists: Protein Interactions Calculator
lists: rVista
lists: Minimap2
lists: PrognoScan
lists: Batch Web CD-Search Tool
lists: AlgPred
lists: GOnet
lists: GalaxyWEB
lists: GalaxyRefine
lists: Annotree
lists: khmer
lists: E-CRISP
lists: Robetta
lists: D-GENIES
lists: aroma.light
lists: Clustal Omega
lists: DESeq
lists: VICMpred
lists: Ray
lists: Apollo
lists: STAMP
lists: discoSnp
lists: vcflib
lists: IgBLAST
lists: BioPerl
lists: Genome BioInformatics Research Lab - gff2ps
lists: Rainbow
lists: Predictions for Entire Proteomes
lists: Stacks
lists: Clustal W2
lists: RNAhybrid
lists: Primer3
lists: SAMtools/BCFtools
lists: EBSeq
lists: biobambam
lists: DIALIGN
lists: Unipro UGENE
lists: Bowtie 2
lists: Artemis: Genome Browser and Annotation Tool
lists: WHAM
lists: Database of Secondary Structure Assignments
lists: Minia
lists: HTSeq
lists: RAxML
lists: Sickle
lists: Segemehl
lists: Staden Package
lists: Bismark
lists: NCBI BLAST
lists: Vienna RNA
lists: GBrowse
lists: ea-utils
lists: AmpliconNoise
lists: COILS: Prediction of Coiled Coil Regions in Proteins
lists: BitSeq
lists: HilbertVis
lists: VarScan
lists: Regulatory Sequence Analysis Tools
lists: CD-HIT
lists: MACH
lists: SOAPsnp
lists: ProbCons
lists: BEAST
lists: Crux tandem mass spectrometry analysis software
lists: Pscan-ChIP
lists: BRIG
lists: tRNAscan-SE
lists: CGView
lists: Circos
lists: FreeBayes
lists: Glimmer
lists: T-Coffee
lists: Oases
lists: LIMMA
lists: cutadapt
lists: SSAKE
lists: edgeR
lists: OpenMS
lists: Flexbar
lists: SIFT
lists: Mauve
lists: Kalign
lists: RSEM
lists: TopHat
lists: DNAcopy
lists: phyloseq
lists: Trinity
lists: AMOS
lists: FastTree
lists: Cufflinks
lists: Prokka
lists: PAML
lists: CummeRbund
lists: GROMACS
lists: minet
lists: Atac
lists: Pilon
lists: GMA
lists: Nanopolish
lists: Krona
lists: SeqPrep
lists: SortMeRNA
lists: THESIAS
lists: tximport
lists: StoatyDive
lists: rCASC
lists: precrec
lists: IMGT-ONTOLOGY
lists: KAT
lists: globaltest
lists: COPASI
lists: CheckM
lists: Blobtools
lists: NiftyPET
lists: SeaView
lists: ASHLAR
lists: KisSplice
lists: metagen
lists: BUSCO
lists: BLINK
lists: bridge
lists: Fcirc
lists: becas
lists: bwtool
lists: TGS-GapCloser
lists: chimerascan
lists: GLUE
lists: mosdepth
lists: dcmqi
lists: SwiftOrtho
lists: andi
lists: metahdep
lists: HaploReg
lists: Jalview
lists: ScanITD
lists: ImaGene
lists: BioNix
lists: qrqc
lists: MeroX
lists: sleuth
lists: imDEV
lists: MiXCR
lists: mlgt
lists: SMARTdenovo
lists: casper
lists: miRDB
lists: shovill
lists: NiftyFit
lists: libmgf
lists: rbsurv
lists: HH-suite
lists: affy
lists: StatAlign
lists: quantsmooth
lists: Fiji
lists: yaqcaffy
lists: Racon
lists: h5vc
lists: seqbias
lists: tensorflow
lists: MGnify
lists: ngs.plot
lists: dyebias
lists: Eoulsan
lists: Cuffdiff
lists: bsseq
lists: VEnCode
lists: OrthoFinder
lists: genomation
lists: SymPy
lists: eTRIKS
lists: ascat
lists: Bridger
lists: GADMA
lists: lumi
lists: PIRATE
lists: Hippocampome.org
lists: HaTSPiL
lists: XL-mHG
lists: VETA
lists: mitopred
lists: ropls
lists: sabre
lists: scanpy
lists: icy
lists: plgem
lists: MethBase
lists: biobakery
lists: minfi
lists: HyPhy
lists: MyGene.info
lists: EpiEstim
lists: NanoSim
lists: fracridge
lists: TDimpute
lists: Pavian
lists: SimVascular
lists: qcmetrics
lists: Laniakea
lists: CRISPRcasIdentifier
lists: BISE
lists: ODAM
lists: MRIcron
lists: smashpp
lists: BSA4Yeast
lists: neuroelectro
lists: RepeatFiller
lists: ShinyLearner
lists: docker4seq
lists: CRISPR-ERA
lists: MAFFT
lists: RepeatScout
lists: Phenoscape
lists: PhenoMeNal
lists: multtest
lists: TransDecoder
lists: les
lists: PlotTwist
lists: CRISPR-P
lists: Telescope
lists: charm
lists: Warp
lists: skewer
lists: Human Neocortical Neurosolver
lists: ggtree
lists: Datanator
lists: genehunter-imprinting
lists: GraphClust2
lists: eisa
lists: scVelo
lists: GEMINI
lists: beadarray
lists: NGSEP
lists: ProP Server
lists: CandiMeth
lists: METAREP
lists: scater
lists: BioBERT
lists: iontree
lists: MetaP
lists: larvalign
lists: UALCAN
lists: VAPPER
lists: halSynteny
lists: EvidenceFinder
lists: bcbio-nextgen
lists: QuickNII
lists: QIIME
lists: phantompeakqualtools
lists: MCScan
lists: pepwheel
lists: PathwayMatcher
lists: vsn
lists: VisR
lists: Galaxy scater
lists: OpenWorm
lists: ffpe
lists: timecourse
lists: Metascape
lists: Bio2BEL
lists: RDXplorer
lists: ActiveDriver
lists: GENCODE
lists: CRISPRdirect
lists: GeneMarkS-T
lists: SPM
lists: Bionitio
lists: ascend
lists: TCW
lists: NanoPipe
lists: NeuroChaT
lists: pheatmap
lists: prank
lists: Online Peri-Event Time Histogram for Open Ephys
lists: kallisto
lists: ggplot2
lists: odMLtables
lists: glycomedb
lists: pickgene
lists: GigaSOM.jl
lists: pvac
lists: EHRtemporalVariability
lists: GemSIM
lists: lapmix
lists: PAFScaff
lists: refgenie
lists: biospytial
lists: EnteroBase
lists: QGIS
lists: CLIP-Explorer
lists: RatMine
lists: NMRProcFlow
lists: cn.mops
lists: SPP
lists: seq-annot
lists: PsyGeNET
lists: PASA
lists: UniCarb-DB
lists: NormqPCR
lists: PhylomeDB
lists: SnpHub
lists: ReadqPCR
lists: circlize
lists: HmtVar
lists: sim4cc
lists: gprege
lists: FusionCatcher
lists: UniCarbKB
lists: clustergrammer
lists: clipcrop
lists: metabnorm
lists: rnaQUAST
lists: VirusMINT
lists: breseq
lists: PerM
lists: SnpEff
lists: DecGPU
lists: e-Driver
lists: NCBI BioProject
lists: Flye
lists: nondetects
lists: PEMer
lists: VCFtools
lists: STAR
lists: fastqz
lists: SAMTOOLS
lists: Neuroscience Information Framework
lists: eProbalign
lists: dbEST
lists: Dali Server
lists: Genomic Ranges
lists: GenomicFeatures
lists: Cistrome
lists: SOAPdenovo
lists: IRanges
lists: BpForms
lists: BcForms
lists: DIANA-mirPath
lists: AthaMap
lists: Ancestrymap
lists: AutoDock
lists: European Genome phenome Archive
lists: GEN3VA
lists: 4See
lists: ABNER
lists: Addgene
lists: A Classification of Mobile genetic Elements
lists: ADMIXTOOLS
lists: AETIONOMY
lists: ADMIXMAP
lists: ALCHEMY
lists: Allele Frequencies in Worldwide Populations
lists: ABS: A Database of Annotated Regulatory Binding Sites From Orthologous Promoters
lists: Alta-Cyclic
lists: Alternate splicing gallery
lists: Assisted Model Building with Energy Refinement (AMBER)
lists: ALOHOMORA
lists: AmpliconTagger
lists: Molecular Dynamics Workflow (BioKepler)
lists: ANDES
lists: ALBERT
lists: ape
lists: ArrayPipe
lists: ArrayMiner
lists: Aroma.affymetrix
lists: ASPEX
lists: The Alternatve Splicing Database
lists: ASSOCIATIONVIEWER
lists: Avogadro
lists: AutoAssemblyD
lists: BadMedicine
lists: BamView
lists: BAIT
lists: BatMeth
lists: AutoDock Vina
lists: BARS
lists: BCBtoolkit
lists: Athena
lists: BarraCUDA
lists: betaVAEImputation
lists: BiG-SLiCE
lists: BBSeq
lists: SVM based method for predicting beta hairpin structures in proteins
lists: BioCarta Pathways
lists: BayesEpiModels
lists: BiNGO: A Biological Networks Gene Ontology tool
lists: BeetleBase
lists: BAR
lists: BioConda
lists: Bioinformatics Toolkit
lists: Bionimbus
lists: biomaRt
lists: Bio++
lists: naiveBayesCall
lists: BioSimulations
lists: BioPlex
lists: Biopieces
lists: BRAIN
lists: BLAT
lists: BS Seeker
lists: Breakpointer
lists: Canu
lists: BioSimulators
lists: BRB-ArrayTools
lists: bioSyntax
lists: CATALYST
lists: BOMP: beta-barrel Outer Membrane protein Predictor
lists: bioRxiv
lists: CAT
lists: CCREL
lists: BWA
lists: CASPAR
lists: CARD
lists: CATH: Protein Structure Classification
lists: CATdb: a Complete Arabidopsis Transcriptome database
lists: Cell Image Library (CIL)
lists: CEM
lists: Cancer Genome Anatomy Project
lists: Centrifuge Classifier
lists: Bs-Seeker2
lists: ChimeraSlayer
lists: ChemSpider
lists: BSVF
lists: CiLiQuant
lists: Chipster
lists: CleanEx
lists: CHEBI
lists: cisTEM
lists: CiteFuse
lists: clustLasso
lists: Chromas
lists: ChiRA
lists: CNVer
lists: CITE-seq-Count
lists: CNV-seq
lists: circlncRNAnet
lists: CMap
lists: COGEME Phytopathogenic Fungi and Oomycete EST Database
lists: ClinVar
lists: ChIPMunk
lists: CODEHOP
lists: ClustVis
lists: CoCo
lists: CONTRA
lists: Comparative Metatranscriptomics Workflow
lists: ComiR
lists: CopyDetective
lists: ConDeTri
lists: Clinotator
lists: cortex
lists: ClinTrajAn
lists: CorMut
lists: Coot
lists: CRCView
lists: CUDASW++
lists: CovalentDock Cloud
lists: Chromosome Scale Assembler
lists: CYANA
lists: Datasets2Tools
lists: DBTSS: Database of Transcriptional Start Sites
lists: CoryneRegNet
lists: CSDeconv
lists: CRISPy-web
lists: dbSNP
lists: ΔG prediction server
lists: DGIdb
lists: DANPOS2
lists: CorrDrugTumorMSI
lists: NCBI database of Genotypes and Phenotypes (dbGap)
lists: Dictyostelium discoideum genome database
lists: DIAMOND
lists: DichroWeb
lists: DETONATE
lists: DicomTypeTranslator
lists: DIME
lists: DEXSeq
lists: DisProt - Database of Protein Disorder
lists: D-EE
lists: DAMBE
lists: DiffBind
lists: DiProGB
lists: DOGMA
lists: DSK
lists: ENIGMA
lists: Descriptions of Plant Viruses
lists: DOMINE: Database of Protein Interactions
lists: Dissect
lists: DrivAER
lists: Enrichr
lists: Variant Effect Predictor
lists: EBCall
lists: eDMR
lists: EMAN
lists: Entrez Gene
lists: ensembldb
lists: Ensembl
lists: Epigenomics Workflow on Galaxy and Jupyter
lists: Ensembl Genomes
lists: epitopepredict
lists: DISENTANGLER
lists: EpiDISH R package
lists: ECLIPSE
lists: Experimental Design Assistant
lists: EpiGRAPH
lists: European Variation Archive (EVA)
lists: eQtlBma
lists: Eukaryote Genes
lists: EXOMEPICKS
lists: fineSTRUCTURE
lists: Evex
lists: Evolutionary Couplings Server
lists: Examl
lists: NHLBI Exome Sequencing Project (ESP)
lists: FlowSOM
lists: FireDB
lists: FGENESH
lists: ExpressYourself
lists: fgsea
lists: FINDbase Worldwide
lists: FateID
lists: FluoRender
lists: An Integrated Multiple Structure Visualization and Multiple Sequence Alignment Application
lists: FlexProt: flexible protein alignment
lists: FlyBase
lists: FLOSS
lists: Full-Length cDNA Database
lists: FANTOM DB
lists: FragGeneScan
lists: FuncAssociate: The Gene Set Functionator
lists: FastQC
lists: Genome Database for Rosaceae
lists: Fugu Genome Project
lists: FunRich: Functional Enrichment analysis tool
lists: GASSST
lists: G-Mo.R-Se
lists: GeneCodis
lists: GASV
lists: FusionHunter
lists: Genome Annotation Generator
lists: GeneSeeker
lists: GenePattern Notebook
lists: GeCo3
lists: Gene3D
lists: GeMoMa
lists: GATK
lists: Genome Projector
lists: Genomedata
lists: Gene Expression Atlas
lists: GeneProf
lists: Genome Trax
lists: GENERECON
lists: Genometa
lists: GEDIT
lists: FunCluster
lists: Gibbs Motif Sampler
lists: GEMB
lists: Genome Reviews
lists: GensearchNGS
lists: GEPAT
lists: Genomic Annotation in Livestock for positional candidate LOci
lists: Generic GO Term Finder
lists: GermOnline
lists: VBASE2
lists: GEO2R
lists: GFINDer: Genome Function INtegrated Discoverer
lists: Generic GO Term Mapper
lists: Google
lists: Gene Ontology
lists: Genome Aggregation Database
lists: Gmove
lists: Git
lists: GNUMAP
lists: G protein receptor interaction feature finding instrument
lists: Graph2GO
lists: Gaggle
lists: GoMapMan
lists: Gramene
lists: GTDB-Tk
lists: GO2MSIG
lists: GMcloser
lists: Genovar
lists: Human Gene Mutation Database
lists: H-InvDB
lists: Bioinformatic Harvester IV (beta) at Karlsruhe Institute of Technology
lists: GRASS
lists: HTR
lists: International HapMap Project
lists: HASTE-project
lists: HARSH
lists: HAPLOCLUSTERS
lists: HSSP
lists: Homologous Sequences in Ensembl Animal Genomes
lists: Human Splicing Finder
lists: HPEPDOCK Server
lists: HS-TDT
lists: HubMed
lists: IBIS: Inferred Biomolecular Interactions Server
lists: hyfi: software suite for binding site search
lists: HiCUP
lists: Human Gene Connectome Server
lists: Identifiers.org
lists: HUGE - Human Unidentified Gene-Encoded large proteins
lists: Hybrid-denovo
lists: HINT
lists: HUDSEN
lists: IntEnz- Integrated relational Enzyme database
lists: IMG System
lists: HCLUST
lists: iDASH
lists: HiPipe
lists: IMGT/StatClonotype
lists: I-TASSER
lists: IRESite
lists: IMEx - The International Molecular Exchange Consortium
lists: IMGT/HLA
lists: ImJoy
lists: IMGT HighV-QUEST
lists: IMGT - the international ImMunoGeneTics information system
lists: IsoEM
lists: IPD - Immuno Polymorphism Database
lists: iPiG
lists: IPI
lists: Isaac
lists: Integr8 : Access to complete genomes and proteomes
lists: inGAP
lists: ISFinder
lists: jmzML
lists: Interolog/Regulog Database
lists: IsoLasso
lists: LAST
lists: LOCUSMAP
lists: J-Express
lists: IsaCGH
lists: IMG
lists: lncRNAdb
lists: InterProScan
lists: KGGSeq
lists: LDSELECT
lists: Magic
lists: JGI Genome Portal
lists: lme4
lists: MAP
lists: OntoQuest
lists: Database oDatabase of Predicted Subcellular Localization for Eukaryotic PDB Chainsf Predicted Subcellular Localization for Eukaryotic PDB Chains
lists: MACiE
lists: LitMiner
lists: long-read-tools
lists: LOCATE: subcellular localization database
lists: LTR_FINDER_parallel
lists: Maq
lists: MaizeGDB
lists: Mammalian Gene Collection
lists: Machado
lists: LRPath
lists: MentaLiST
lists: MatrixDB
lists: MARRVEL
lists: MEBS: Multigenomic Entropy-Based Score
lists: Libra
lists: LS-SNP/PDB
lists: mapDamage
lists: Maqview
lists: Mascot
lists: MAKER
lists: MapSplice
lists: MetAMOS
lists: MethylExtract
lists: MBGD - Microbial Genome Database
lists: MB-GAN
lists: MetaCyc
lists: MeQA
lists: MEGAHIT
lists: Metabolomics Workbench
lists: miRBase
lists: Metastats
lists: MBCluster.Seq
lists: metaXplor
lists: lsa_slurm
lists: MeRIP-PF
lists: MendelIHT.jl
lists: proMODMatcher
lists: mirTools
lists: MetaCyto
lists: MMAPPR
lists: MICSA
lists: MIRIAM Resources
lists: MaSuRCA
lists: UEA sRNA Workbench
lists: MetaVelvet
lists: miROrtho: the catalogue of animal microRNA genes
lists: MERMAID
lists: Mspire-Simulator
lists: MULTIMAP
lists: ML Repo
lists: MIP Scaffolder
lists: SCIPION
lists: MPscan
lists: MISA
lists: MobiDB
lists: MutPred
lists: MizBee
lists: MRFSEQ
lists: MultiLoc
lists: MP3 tool
lists: Multi-omics Visualization Platform
lists: NCBI Probe
lists: NeLS
lists: MoDIL
lists: MPDA
lists: Noncoding RNA database
lists: Myriads
lists: MUMmer
lists: Multiple Myeloma survival predictor
lists: mrCaNaVaR
lists: MULTIDISEQ
lists: mzMatch
lists: Mouse Phenome Database (MPD)
lists: NCBI
lists: Ngs backbone
lists: NetMHCpan Server
lists: miRpathDB
lists: NEMBASE
lists: Nucleic Acid Database
lists: NCBI Genome Workbench
lists: NeuroMatic
lists: Ngmlr
lists: nsSNPAnalyzer
lists: Nephele
lists: Online Resource for Community Annotation of Eukaryotes
lists: Omics Data Paper Generator
lists: Necklace
lists: NEST Simulator
lists: Genotyping
lists: NucleoFinder
lists: NGSView
lists: Open Trials
lists: ngLOC
lists: NetNGlyc
lists: nmrML
lists: NURD
lists: ObjTables
lists: Pathway Tools
lists: NeSSM
lists: NanoGalaxy
lists: PartiGeneDB
lists: NOrMAL
lists: Open Babel
lists: OsiriX Medical Imaging Software
lists: PDB Finder
lists: Opera
lists: Pathbase
lists: PEDIGREEQUERY
lists: PAZAR
lists: PDBe - Protein Data Bank in Europe
lists: PanoramaWeb
lists: Oncodrive-fm
lists: parSMURF
lists: Orientations of Proteins in Membranes database
lists: PEDHUNTER
lists: PeakAnalyzer
lists: Illuminating the Druggable Genome
lists: Phenotypes and eXposures Toolkit
lists: PeakSeq
lists: Pairwise Conservation Scores - An Algorithm to Identify Conserved K-mers
lists: PicTar
lists: Pash 3.0
lists: Pedigree-Draw
lists: OLego
lists: Parliament2
lists: Phylogeny.fr
lists: PEDPEEL
lists: Plant Co-expression Annotation Resource
lists: Peakzilla
lists: Pfam
lists: PhaseME
lists: PHI-base
lists: Eddy Lab Software
lists: PhyML
lists: Protein Information Resource
lists: PRADA
lists: PM4NGS
lists: PennSeq
lists: Philius
lists: PeptideAtlas
lists: PHYLIP
lists: PhenoMan
lists: Proteomics Identifications (PRIDE)
lists: pNovo+
lists: ProfCom - Profiling of complex functionality
lists: PIRSF
lists: PubCrawler
lists: PhyloPat
lists: PEMA
lists: Polygenic Pathways
lists: pFind Studio: pLink
lists: ProteomeXchange
lists: PLANTTFDB
lists: PyRosetta
lists: Phospho.ELM
lists: PRICE
lists: PolymiRTS
lists: PLINK/SEQ
lists: PrimerBank
lists: Pyntacle
lists: PubChem
lists: ProSight Lite
lists: PubGene
lists: PRED-TMBB
lists: Preseq
lists: ProtChemSI
lists: R Project for Statistical Computing
lists: RaptorX
lists: QSRA
lists: Protein Prospector
lists: PrimerSeq
lists: R/QTLBIM
lists: Reactome
lists: PyBEL
lists: PS-Plant Framework
lists: RepeatModeler
lists: QuickGO
lists: QmRLFS-finder
lists: RefSeq
lists: The Human Protein Atlas
lists: QGene
lists: PolyPhred
lists: Rampart
lists: ResponseNet
lists: QUMA
lists: QMSIM
lists: RAREMETAL
lists: Relate
lists: ReactomePA
lists: RESID
lists: RADAR-base
lists: Reaper - Demultiplexing trimming and filtering sequencing data
lists: R-SAP
lists: Research-tested Intervention Programs (RTIPs)
lists: RNA FRABASE - RNA FRAgments search engine and dataBASE
lists: Reptile
lists: Rdisop
lists: RNA-SeQC
lists: RNA Virus Database
lists: RESCUE-ESE
lists: REDItools
lists: RegulonDB
lists: SeqExpress
lists: Scansite
lists: RiboTaper
lists: SALT
lists: riborex
lists: REDfly Regulatory Element Database for Drosophilia
lists: rna-stability
lists: RNAplex
lists: rSNP Guide
lists: SVA
lists: RightField
lists: runBioSimulations
lists: SAMMate
lists: SeqtrimNEXT
lists: rSeq
lists: SeqEM
lists: ROMPREV
lists: SeqSaw
lists: SHARCGS
lists: SAFA Footprinting Software
lists: SHELX
lists: sapFinder
lists: QuPath
lists: SIBLINK
lists: Seqtk
lists: SEEK
lists: SMRT View
lists: SKAT
lists: SimRare
lists: SeQuiLa
lists: SGA
lists: SASQUANT
lists: Sherman
lists: SilkDB
lists: FASTSLINK
lists: SASGENE
lists: SILVA
lists: SGD
lists: ShinyGO
lists: SimSeq
lists: SIDER
lists: SMI Services
lists: Sniffles
lists: STEPS
lists: SNP HITLINK
lists: SOAPnuke
lists: SGN
lists: SIBMED
lists: SIMULATE
lists: rnaSPAdes
lists: SpliceMap
lists: SMART
lists: SnoopCGH
lists: SynTView
lists: SIMPED
lists: Supersplat
lists: SnpSift
lists: SISSRs
lists: Sybil
lists: Solas
lists: SNPTEST
lists: SISYPHUS
lists: ASC
lists: SOAPfusion
lists: TAndem Splice Site DataBase
lists: SoupX
lists: StSNP
lists: T-lex
lists: SWEEP
lists: SynergyFinder
lists: topGO
lists: TAPIR: target prediction for plant microRNAs
lists: TDT-PC
lists: TDR Targets Database
lists: SpoTyping
lists: ShortFuse
lists: SWISS-2DPAGE
lists: Spot
lists: TAGS
lists: SYFPEITHI: A Database for MHC Ligands and Peptide Motifs
lists: SUMSTAT
lists: TMAJ
lists: TASSEL
lists: TreeDyn
lists: TropGENE DB
lists: TB PORTALS
lists: SwissTree
lists: tradeSeq
lists: FLUX CAPACITOR
lists: UNAFold
lists: Transporter Classification Database
lists: ApiDB ToxoDB
lists: Trowel
lists: TopFIND
lists: TRAL
lists: Trim Galore
lists: Biological General Repository for Interaction Datasets (BioGRID)
lists: IQ-TREE
lists: VirusSeq
lists: Tool recommender system in Galaxy
lists: V-Phaser 2
lists: SPIKE
lists: Trans-ABySS
lists: TRiCoLOR
lists: TomoMiner
lists: variancePartition
lists: TRACESPipe
lists: UTRdb/UTRsite
lists: UniParc
lists: TWOLOC
lists: USeq
lists: Zebrafish Information Network (ZFIN)
lists: XPN
lists: TransmiR
lists: Webproanalyst
lists: UTGB Toolkit
lists: VAAST
lists: VirusHunter
lists: Yeast Search for Transcriptional Regulators And Consensus Tracking
lists: zUMIs
lists: VaDiR
lists: WSsas - Web Service for the SAS tool
lists: VFDB - Virulence Factors of Bacterial Pathogens
lists: Gene Index Project
lists: Vector Alignment Search Tool
lists: Vmatch
lists: WEIGHTED FDR
lists: Xenbase
lists: xia2 pipeline
lists: YASARA
lists: Visualization and Analysis of Networks containing Experimental Data (VANTED)
lists: VisSR
lists: dbEST
lists: DESeq2
lists: DNA DataBank of Japan (DDBJ)
lists: FASTX-Toolkit
lists: Trimmomatic
lists: VIPERdb
lists: PhenStat
lists: ABySS
lists: Integrative Genomics Viewer
lists: Human Disease Ontology
lists: LINKAGE
lists: ConSurf Database
lists: Protein Information Resource
lists: PredictNLS
lists: tRNAscan-SE
lists: VeryFastTree
lists: RSEM
lists: Emboss Water
lists: MEtabolomes, TRaits, and INteractions-Knowledge Graph
is listed by: Debian
is listed by: ELIXIR Tools and Data Services Registry
is affiliated with: ELIXIR Tools and Data Services Registry
is related to: ms-utils.org
is related to: SUP
|
|
European Union Horizon 2020 ELIXIR-EXCELERATE grant 676559;
Danish Ministry of Higher Education and Science |
DOI:10.1186/s13059-019-1772-6
PMID:26538599 |
Free, Freely available |
|
biotools:bio.tools, r3d100013668 |
https://github.com/bio-tools/biotoolsRegistry/, https://bio.tools/bio.tools, https://doi.org/10.17616/R31NJN1G |
http://bio.tools |
|
SCR_014695 |
|
2026-08-03 09:35:35 |
24 |
BioPortal
Resource Report
Resource Website
100+ mentions
|
BioPortal (RRID:SCR_002713)
|
BioPortal
|
data repository, ontology, service resource, repository, storage service resource, controlled vocabulary, data or information resource
|
Open repository of biomedical ontologies that provides access via Web browsers and Web services to ontologies. It supports ontologies in OBO format, OWL, RDF, Rich Release Format (RRF), Protege frames, and LexGrid XML. Functionality includes the ability to browse, search and visualize ontologies as well as to comment on, and create mappings for ontologies. Any registered user can submit an ontology. The NCBO Annotator and NCBO Resource Index can also be accessed via BioPortal. Additional features: * Add Reviews: rate the ontology according to several criteria and describe your experience using the ontology. * Add Mappings: submit point-to-point mappings or upload bulk mappings created with external tools. Notification of new Mappings is RSS-enabled and Mappings can be browsed via BioPortal and accessed via Web services. * NCBO Annotator: Tool that tags free text with ontology terms. NCBO uses the Annotator to generate ontology annotations, creating an ontology index of these resources accessible via the NCBO Resource Index. The Annotator can be accessed through BioPortal or directly as a Web service. The annotation workflow is based on syntactic concept recognition (using the preferred name and synonyms for terms) and on a set of semantic expansion algorithms that leverage the ontology structure (e.g., is_a relations). * NCBO Resource Index: The NCBO Resource Index is a system for ontology based annotation and indexing of biomedical data; the key functionality of this system is to enable users to locate biomedical data linked via ontology terms. A set of annotations is generated automatically, using the NCBO Annotator, and presented in BioPortal. This service uses a concept recognizer (developed by the National Center for Integrative Biomedical Informatics, University of Michigan) to produce a set of annotations and expand them using ontology is_a relations. * Web services: Documentation on all Web services and example code is available at: BioPortal Web services.
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biomedical, thesaurus, ontology mapping, annotation, metadata standard, ontology repository, portal, web service, obo, owl, rdf, rrf protege frame, lexgrid xml
|
lists: MeGO
lists: Porifera Ontology
lists: EnvO
lists: Research Network and Patient Registry Inventory Ontology
lists: Semantic DICOM Ontology
lists: Time Event Ontology
lists: Variation Ontology
lists: Vertebrate Skeletal Anatomy Ontology
lists: Epoch Clinical Trial Ontology
lists: Gazetteer
lists: Human Disease Ontology
lists: Information Artifact Ontology
lists: NCBITaxon
lists: Amphibian Taxonomy Ontology
lists: Anatomic Pathology Lexicon
lists: HIV ontology
lists: International Classification of Primary Care - 2 PLUS
lists: Mathematical Modelling Ontology
lists: Nursing Interventions Classification
lists: Phylogenetic Ontology
lists: Bleeding History Phenotype Ontology
lists: Body System Terms from ICD11
lists: Synthetic Biology Open Language Visual Ontology
lists: Teleost Anatomy Ontology
lists: Teleost Taxonomy Ontology
lists: ECO
lists: Bioassay Ontology
lists: RightField
lists: Gene Ontology
lists: HGNC
lists: Interaction Ontology
lists: International Classification for Nursing Practice
lists: Spider Ontology
lists: Vertebrate Trait Ontology
lists: Mental Functioning Ontology
lists: Ascomycete Phenotype Ontology
lists: Beta Cell Genomics Ontology
lists: Biological Collections Ontology
lists: Chemical Methods Ontology
lists: Chemical Information Ontology
lists: Common Anatomy Reference Ontology
lists: Experimental Conditions Ontology
lists: Dictyostelium Discoideum Anatomy Ontology
lists: Fission Yeast Phenotype Ontology
lists: Fly Taxonomy
lists: FlyBase Controlled Vocabulary
lists: Hymenoptera Anatomy Ontology
lists: Influenza Ontology
lists: Lipid Ontology
lists: Kinetic Simulation Algorithm Ontology
lists: Malaria Ontology
lists: FMA
lists: Minimal Anatomical Terminology
lists: NEMO Ontology
lists: Ontology for Genetic Interval
lists: Ontology for Parasite LifeCycle
lists: Ontology of Adverse Events
lists: Ontology of Medically Related Social Entities
lists: Ontology of Vaccine Adverse Events
lists: Rat Strain Ontology
lists: Plant Environmental Conditions
lists: Plant Trait Ontology
lists: Population and Community Ontology
lists: RNA Ontology
lists: Rat Strain Ontology
lists: Subcellular Anatomy Ontology
lists: Software Ontology
lists: Suggested Ontology for Pharmacogenomics
lists: Vertebrate Taxonomy Ontology
lists: PharmGKB Ontology
lists: Physico-Chemical Process
lists: International Classification for Patient Safety
lists: Adverse Event Reporting Ontology
lists: Experimental Factor Ontology
lists: Mass Spectrometry Ontology
lists: Master Drug Data Base Clinical Drugs
lists: Medaka Fish Anatomy and Development Ontology
lists: Medical Diagnostic Categories - Diagnosis Related Groups
lists: Medical Dictionary for Regulatory Activities
lists: Minimal Standard Terminology of Digestive Endoscopy
lists: Minimal Standard Terminology of Digestive Endoscopy - French
lists: Ontology of Physical Exercises
lists: Mosquito Gross Anatomy Ontology
lists: Systematized Nomenclature of Medicine - International Version
lists: Mosquito Insecticide Resistance Ontology
lists: Mouse Experimental Design Ontology
lists: Mouse Gross Anatomy and Development Ontology
lists: Systematized Nomenclature of Medicine - Clinical Terms
lists: Systems Chemical Biology and Chemogenomics Ontology
lists: Mouse Pathology Ontology
lists: NIF Cell Ontology
lists: NHS Quality Indicators
lists: Neural-Immune Gene Ontology
lists: Ontology of Physics for Biology
lists: Cell Type Ontology
lists: Xenopus Anatomy Ontology
lists: SO
lists: Ontology of Pneumology
lists: Open Biological and Biomedical Ontologies Relationship Types
lists: Biomedical Resource Ontology
lists: MGED Ontology
lists: Pharmacovigilance Ontology
lists: PhenX Phenotypic Terms
lists: Bioinformatics Web Service Ontology
lists: SysMO JERM Ontology of Systems Biology for Micro-Organisms
lists: MeSH
lists: PATO
lists: BFO
lists: MPO
lists: PR
lists: Cereal Plant Development Ontology
lists: PhenomeBLAST Ontology
lists: VIVO
lists: Computer Assisted Brain Injury Rehabilitation Ontology
lists: Computer Retrieval of Information on Scientific Projects Thesaurus
lists: NIFSTD
lists: Cell Line Ontology
lists: Student Health Record Ontology
lists: Zebrafish Anatomical Ontology
lists: Physical Medicine and Rehabilitation
lists: Randomized Controlled Trials Ontology
lists: Human Phenotype Ontology
lists: Read Codes Clinical Terms Version 3
lists: Reference Sequence Annotation
lists: Regulation of Gene Expression Ontolology
lists: Neurobehavior Ontology
lists: Regulation of Transcription Ontology
lists: Reproductive Trait and Phenotype Ontology
lists: Skin Physiology Ontology
lists: Vaccine Ontology
lists: OMIM
lists: MedlinePlus
lists: Adult Mouse Anatomy Ontology
lists: Bone Dysplasia Ontology
lists: Bone and Cartilage Tissue Engineering Ontology
lists: Botryllus schlosseri anatomy and development ontology
lists: EDAM Ontology
lists: LexGrid
lists: RxNorm
lists: Breast Cancer Grading Ontology
lists: Breast Tissue Cell Lines Ontology
lists: SBO
lists: Resource of Asian Primary Immunodeficiency Diseases Phenotype Ontology
lists: Brucellosis Ontology
lists: Sleep Domain Ontology
lists: C. elegans Development Vocabulary
lists: Physician Data Query
lists: C. elegans Gross Anatomy Vocabulary
lists: Plant Ontology
lists: C. elegans Phenotype Vocabulary
lists: CPTAC Proteomics Pipeline Infrastructure Ontology
lists: Cancer Research and Management ACGT Master Ontology
lists: Cancer Chemoprevention Ontology
lists: Cell Behavior Ontology
lists: Cereal Plant Gross Anatomy Ontology
lists: Cardiac Electrophysiology Ontology
lists: Cerebrotendinous Xanthomatosis Ontology
lists: Cell Cycle Ontology
lists: Cell Culture Ontology
lists: Cerrado concepts and plant community dynamics
lists: Clinical Signs and Symptoms Ontology
lists: Clusters of Orthologous Groups Analysis Ontology
lists: Computational Neuroscience Ontology
lists: BIRNLex
lists: Computer-Based Patient Record Ontology
lists: Congenital Heart Defects Ontology
lists: Drug Interaction Knowledge Base Ontology
lists: Healthcare Common Procedure Coding System
lists: Host Pathogen Interactions Ontology
lists: Human Dermatological Disease Ontology
lists: Solanaceae Phenotype Ontology
lists: Soy Ontology
lists: Spatial Ontology
lists: Surgical Secondary Events
lists: eagle-i research resource ontology
lists: Biological Pathways Exchange
lists: Autism Spectrum Disorder Phenotype Ontology
lists: BRENDA Tissue and Enzyme Source Ontology
lists: BioTop Ontology
lists: Family Health History Ontology
lists: International Classification of Diseases Version 9 - Clinical Modification
lists: BioModels Ontology
lists: Bilingual Ontology of Alzheimer
lists: BioPortal Metadata Ontology
lists: Biochemical Substructure Ontology
lists: Biodiversity Ontology
lists: Biological Imaging Methods Ontology
lists: International Classification of Functioning Disability and Health
lists: Biologie Hors Nomenclature
lists: International Classification of Primary Care
lists: Biomedical Research Integrated Domain Group Model
lists: KB Bio 101
lists: Bionutrition Ontology
lists: Artificial Intelligence Rheumatology Consultant System Ontology
lists: Leukocyte Surface Marker Ontology
lists: Cell Line Ontology by Mahadevan
lists: Cellular microscopy phenotype ontology
lists: ABA Adult Mouse Brain Ontology
lists: AEO
lists: African Traditional Medicine Ontology
lists: Alzheimer's disease ontology
lists: Amino Acid Ontology
lists: Amphibian Gross Anatomy Ontology
lists: Animal Natural History and Life History Ontology
lists: Coding Symbols for a Thesaurus of Adverse Reaction Terms
lists: Cognitive Atlas Ontology
lists: Common Terminology Criteria for Adverse Events
lists: Comparative Data Analysis Ontology
lists: Content Archive Resource Exchange Lexicon
lists: Crop Ontology
lists: Current Procedural Terminalogy Hierarchy
lists: Current Procedural Terminology
lists: DICOM Controlled Terminology
lists: Dataset processing
lists: Dengue Fever Ontology
lists: Dermatology Lexicon
lists: Diagnosis Ontology of Clinical Care Classification
lists: Diagnostic Ontology
lists: Disease core ontology applied to Rare Diseases
lists: Dispedia Core Ontology
lists: Drosophila Development Ontology
lists: Drosophila Gross Anatomy Ontology
lists: EDDA Study Design Terminology
lists: Electrocardiography Ontology
lists: Eligibility Feature Hierarchy
lists: Enzyme Mechanism Ontology
lists: Enzyme Reaction Ontology for partial chemical perspectives
lists: Epilepsy Ontology
lists: Loggerhead Nesting Ontology
lists: Fanconi Anemia Ontology
lists: Fire Ontology
lists: Flora Phenotype Ontology
lists: Fungal Gross Anatomy Ontology
lists: Human Developmental Anatomy Ontology abstract version 1
lists: G Protein-Coupled Receptor BioAssays Ontology
lists: Galen Ontology
lists: Gene Expression Ontology
lists: Gene Ontology Extension
lists: General Formal Ontology
lists: General Formal Ontology for Biology
lists: Genome Component Ontology
lists: Genomic Clinical Decision Support Ontology
lists: GeoSpecies Ontology
lists: Glycomics Ontology
lists: Habronattus Courtship Ontology
lists: Health Indicator Ontology
lists: Health Level Seven Reference Implementation Model Version 3
lists: Human Developmental Anatomy Ontology abstract version 2
lists: Human Developmental Anatomy Ontology timed version
lists: Human Interaction Network Ontology
lists: Human Physiology Simulation Ontology
lists: Logical Observation Identifier Names and Codes
lists: IMGT-ONTOLOGY
lists: Image and Data Quality Assessment Ontology
lists: Immune Disorder Ontology
lists: Infectious Disease Ontology
lists: InterNano Nanomanufacturing Taxonomy
lists: Interaction Network Ontology
lists: International Classification of External Causes of Injuries
lists: International Classification of Diseases Version 10
lists: International Classification of Diseases Version 10 - Clinical Modification
lists: International Classification of Diseases Version 10 - Procedure Coding System
lists: MR dataset acquisition
lists: Maize Gross Anatomy Ontology
lists: Major Histocompatibility Complex Ontology
lists: Medical image simulation
lists: Menelas Project Top-Level Ontology
lists: Mental State Assessment
lists: Metagenome Sample Vocabulary
lists: Metagenome and Microbes Environmental Ontology
lists: MicroRNA Ontology
lists: Microbial Culture Collection Vocabulary
lists: Microbial Typing Ontology
lists: Minimal Information about any Sequence Controlled Vocabularies
lists: Minimal Information about any Sequence Ontology
lists: NIF Dysfunction Ontlogy
lists: NIF Subcellular Ontology
lists: NMR-Instrument Component of Metabolomics Investigations Ontology
lists: Name Reaction Ontology
lists: NanoParticle Ontology
lists: National Cancer Institute Thesaurus
lists: National Drug Data File
lists: National Drug File - Reference Terminology
lists: Natural Products Ontology
lists: Neglected Tropical Disease Ontology
lists: Neomark Oral Cancer Ontology version 3
lists: Neomark Oral Cancer Ontology version 4
lists: Neural Motor Recovery Ontology
lists: NeuroMorpho.Org species ontology
lists: NeuroMorpho.Org species ontology old
lists: Non-Randomized Controlled Trials Ontology
lists: Nursing Care Coordination Ontology
lists: Ontological Knowledge Base Model for Cystic Fibrosis
lists: Ontology for Drug Discovery Investigations
lists: Ontology for General Medical Science
lists: Ontology for Genetic Disease Investigations
lists: Ontology for Genetic Susceptibility Factor
lists: Ontology for MicroRNA Target Prediction
lists: Symptom Ontology
lists: Ontology for Newborn Screening Follow-up and Translational Research
lists: Ontology of Alternative Medicine French
lists: Ontology of Biological and Clinical Statistics
lists: Ontology of Clinical Research
lists: Ontology of Core Data Mining Entities
lists: Ontology of Data Mining Investigations
lists: Pediatric Terminology
lists: Ontology of Experimental Variables and Values
lists: Ontology of General Purpose Datatypes
lists: Ontology of Geographical Region
lists: Ontology of Glucose Metabolism Disorder
lists: Ontology of Homology and Related Concepts in Biology
lists: Ontology of Language Disorder in Autism
lists: Orphanet Rare Disease Ontology
lists: Parasite Experiment Ontology
lists: Pathogen Transmission Ontology
lists: Pathogenic Disease Ontology
lists: Pharmacogenomic Relationships Ontology
lists: Physico-Chemical Methods and Properties
lists: Plant Anatomy
lists: Syndromic Surveillance Ontology
lists: Plant Structure Development Stage
lists: Portfolio Management Application
lists: Protein Modification Ontology
lists: Protein-Protein Interaction Ontology
lists: Proteomics Data and Process Provenance Ontology
lists: Provenance Ontology
lists: QUDT
lists: Quantitative Imaging Biomarker Ontology
lists: Radiology Lexicon
lists: Robert Hoehndorf Version of MeSH
lists: Role Ontology
lists: STATistics Ontology
lists: Sage Bionetworks Synapse Ontology
lists: Sample Processing and Separation Techniques Ontology
lists: Santa Barbara Coastal Observation Ontology
lists: Semantic Types Ontology
lists: Semantic Web for Earth and Environment Technology Ontology
lists: Semanticscience Integrated Ontology
lists: Single-Nucleotide Polymorphism Ontology
lists: Situation-Based Access Control Ontology
lists: Taxonomic Rank Vocabulary
lists: Taxonomy for Rehabilitation of Knee Conditions
lists: Terminological and Ontological Knowledge Resources Ontology
lists: Tick Gross Anatomy Ontology
lists: Tissue Microarray Ontology
lists: Traditional Medicine Constitution Value Set
lists: Traditional Medicine Meridian Value Sets
lists: Traditional Medicine Other Factors Value Set
lists: Traditional Medicine Signs and Symptoms Value Set
lists: Translational Medicine Ontology
lists: Tribolium Ontology
lists: Units Ontology
lists: Units of Measurement Ontology
lists: Upper-Level Cancer Ontology
lists: Vertebrate Homologous Organ Group Ontology
lists: Veterans Health Administration National Drug File
lists: Vital Sign Ontology
lists: WHO Adverse Reaction Terminology
lists: Web-Service Interaction Ontology
lists: Wheat Trait Ontology
lists: XEML Environment Ontology
lists: suicideo
lists: suicideonto
lists: Pseudogene
lists: Terminology for the Description of Dynamics
lists: Gene Regulation Ontology
lists: UBERON
lists: CHEBI
lists: Cognitive Paradigm Ontology
lists: Emotion Ontology
lists: Clinical Measurement Ontology
lists: Measurement Method Ontology
lists: NCI Thesaurus
lists: Ontology for Biomedical Investigations
lists: Biological Pathways Exchange
is listed by: Biositemaps
is listed by: FORCE11
is related to: Provisional Cell Ontology
has parent organization: National Center for Biomedical Ontology
has parent organization: Stanford University; Stanford; California
has parent organization: Stanford Center for Biomedical Informatics Research
is parent organization of: NCBO Annotator
|
|
NIGMS U24 GM143402 |
PMID:19483092
PMID:21672956
PMID:18999306 |
Free, Available for download, Freely available |
|
nif-0000-23346, r3d100012344 |
https://www.force11.org/node/4646, https://doi.org/10.17616/R3J362 |
|
|
SCR_002713 |
BioPortal Knowledgebase |
2026-08-03 09:31:58 |
328 |
Cytokine Registry
Resource Report
Resource Website
1+ mentions
|
Cytokine Registry (RRID:SCR_014368)
|
|
data or information resource, database
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A registry of cytokines, chemokines, and receptors generated for the purpose of collecting, integrating, and mapping between entity names and synonyms from several resources. These resources include MeSH, the Protein Ontology, EntrezGene, HGNC, MGI, UniProt and others.
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cytokine, registry, innate immune system, chemokine, receptor
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uses: UniProt
uses: MeSH
uses: Plant Ontology
uses: Mouse Genome Informatics (MGI)
uses: HGNC
uses: Entrez Gene
is affiliated with: The Immunology Database and Analysis Portal (ImmPort)
has parent organization: University of California at San Francisco; California; USA
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NIAID ;
NIH ;
Department of Health and Human Services |
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Acknowledgement required, Registry file is available for download |
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SCR_014368 |
ImmPort Cytokine Registry |
2026-08-03 09:35:37 |
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