Bio-Formats
Resource Report
Resource Website
50+ mentions
|
Bio-Formats (RRID:SCR_000450)
|
Bio-Formats
|
software toolkit, software resource, software library, standalone software, software application
|
Standalone software Java library for reading microscopy image data files in any format and writing image data using standardized, open formats. It currently reads and converts more than 120 file formats to the OME-TIFF data standard.
|
Java library, reading microscopy image data files, writing image data, standardized format, open format,
|
is listed by: FORCE11
is listed by: Debian
is related to: OMERO
is related to: OME-TIFF Format
has parent organization: OME - Open Microscopy Environment
|
|
Wellcome Trust |
|
Free, Available for download, Freely available |
|
nif-0000-30175 |
http://www.force11.org/node/4810, http://www.loci.wisc.edu/software/bio-formats, https://sources.debian.org/src/libbio-formats-java/ |
|
|
SCR_000450 |
, BioFormats, Bio-Formats Library, The Bio-Formats Library |
2026-08-02 09:02:52 |
60 |
OME - Open Microscopy Environment
Resource Report
Resource Website
1+ mentions
|
OME - Open Microscopy Environment (RRID:SCR_008849)
|
OME
|
narrative resource, software resource, data or information resource, standard specification, source code
|
Open tools to support data management for biological light microscopy produced by a multi-site collaborative effort among academic laboratories and a number of commercial entities. Designed to interact with existing commercial software, all OME formats and software are free, and all OME source code is available under the GNU General public license or through commercial license from Glencoe Software. OME is developed as a joint project between research-active laboratories at the Dundee, NIA Baltimore, and Harvard Medical School and LOCI. In addition, OME has active collaborations with many imaging and informatics groups. While many other applications could use OME''s architecture and design, their specific implementation is focused on biological and biomedical imaging. Those interested in applying OME''s technology to other applications should contact the developers. OME work is divided into several different standards and software projects: * Bio-Formats: A Java-based library for reading and writing over 90 microscopy file formats. * OMERO Software: The Java-based OMERO software project, which currently includes tools for storing, visualizing, managing, and annotating microscopic images and metadata. * OME-XML & OME-TIFF: The OME-XML and OME-TIFF file format specifications, which are open file formats for sharing microscope image data. * OME Server: This was the original OME server project which has now ended and is a legacy product. It implements image-based analysis of cellular dynamics and image-based screening of cellular localization or phenotypes, and included a fully developed version of the 2003 version of OME-XML Schema language.
|
light microscopy, imaging, biomedical imaging, image, microscope, biomedical
|
has parent organization: University of Dundee; Scotland; United Kingdom
is parent organization of: Bio-Formats
is parent organization of: OMERO
is parent organization of: OME-TIFF Format
|
Aging |
|
PMID:15892875
PMID:20513764 |
GNU General Public License, Commercial license, (Glencoe Software) |
|
nlx_146268 |
|
|
|
SCR_008849 |
Open Microscopy Environment |
2026-08-02 09:05:31 |
8 |
OME-TIFF Format
Resource Report
Resource Website
|
OME-TIFF Format (RRID:SCR_002636)
|
OME-TIFF
|
standard specification, narrative resource, data or information resource
|
A standardized file format for multidimensional microscopy image data. OME-TIFF maximizes the respective strengths of OME-XML and TIFF. It takes advantage of the rich metadata defined in OME-XML while retaining the pixel structure in multi-page TIF format for compatibility with many image-processing applications. An OME-TIFF dataset has the following characteristics: * Image planes are stored within one multi-page TIFF file, or across multiple TIFF files. Any image organization is feasible. * A complete OME-XML metadata block describing the dataset is embedded in each TIFF file's header. Thus, even if some of the TIFF files in a dataset are misplaced, the metadata remains intact. * The OME-XML metadata block may contain anything allowed in a standard OME-XML file. * OME-TIFF uses the standard TIFF mechanism for storing one or more image planes in each of the constituent files, instead of encoding pixels as base64 chunks within the XML. Since TIFF is an image format, it makes sense to only use OME-TIFF as opposed to OME-XML, when there is at least one image plane.
|
microscopy, format, archiving, data management, annotation, mark up, metadata standard, standard, tiff, ome-xml
|
is listed by: FORCE11
is related to: JCB DataViewer
is related to: Cell Image Library (CIL)
is related to: HMS LINCS Database
is related to: Stowers Original Data Repository
is related to: Bio-Formats
has parent organization: OME - Open Microscopy Environment
|
|
Wellcome Trust 68046 |
PMID:15892875 |
Free, Available for download, Freely available |
|
nlx_156061 |
|
|
|
SCR_002636 |
OME-TIFF: Open Microscopy Environment Tagged Image File Format, Open Microscopy Environment Tagged Image File Format |
2026-08-02 09:03:33 |
0 |
OMERO
Resource Report
Resource Website
100+ mentions
|
OMERO (RRID:SCR_002629)
|
OMERO
|
software resource, data visualization software, data processing software, data management software, software application, image analysis software
|
Client-server software for management, visualization, and analysis of biological microscopy images. OMERO handles images in a secure central repository where users can view, organize, analyze and share data from anywhere with internet access. Work with images from a desktop app (Windows, Mac or Linux), from the web or from 3rd party software.
|
light microscopy, electron microscopy, genotype, archiving, data repository, data sharing, image, metadata
|
is listed by: FORCE11
is related to: Bio-Formats
has parent organization: OME - Open Microscopy Environment
|
|
BBSRC BB/G022585;
BBSRC BB/I000755;
BBSRC BB/G022577;
Jisc REXDAT03 |
PMID:22373911 |
Free, Available for download, Freely available |
|
nlx_156069 |
|
|
|
SCR_002629 |
OMERO - Open Microscopy Environment Remote Objects, Open Microscopy Environment Remote Objects, OME Remote Objects |
2026-08-02 09:03:33 |
176 |
FORCE11
Resource Report
Resource Website
10+ mentions
|
FORCE11 (RRID:SCR_005334)
|
FORCE11
|
blog, narrative resource, data or information resource, portal, community building portal, knowledge environment
|
A collaboration which works to transform scholarly communications through advanced use of computers and the Web. FORCE11 advocates the digital publishing of papers in order to enable more effective scholarly communication. The virtual community also advocates the publication of software tools and research communication by means of social media channels. As such, FORCE11 provides access to information and tools for the wider scientific community.
|
scholarly communication, scholarship, dissemination, data sharing, knowledge, information technology, semantics, digital publishing, information gathering, research communication, e-scholarship, digital object, scientific communication
|
lists: Scholarly Ontologies Project
lists: Academia.edu
lists: StratML
lists: Evernote
lists: NPG publishing format
lists: Fiduswriter
lists: Altmetric Bookmarklet
lists: Altmetric Explorer
lists: Epistemio
lists: Hypothes.is
lists: Bio-Formats
lists: iSpyBio.com
lists: BioLexicon
lists: Craig Mod
lists: KLEIO
lists: aTag Generator
lists: Knowledge Engineering from Experimental Design
lists: Utopia Docs
lists: Zebrafish - SCORE Imaging: Specimen in a Corrected Optical Rotational Enclosure
lists: Semantic Measures Library
lists: Open Education Database
lists: Brainspell
lists: IPython
lists: Adobe FormsCentral
lists: Altmetric API
lists: myExperiment
lists: ISA Infrastructure for Managing Experimental Metadata
lists: Minimum Information for Biological and Biomedical Investigations
lists: A modular structure for scientific articles in an electronic environment
lists: Liquid Publications: Scientific Publications meet the Web
lists: AQnowledge Bookmarklet
lists: Authorea
lists: Bamboo DiRT
lists: Altmetric Badges
lists: ESIP Data Management Short Course for Scientists
lists: Etherpad
lists: Commons In A Box
lists: CKAN
lists: DMPTool
lists: eScholarship
lists: Git2PROV
lists: OMERO
lists: GitHub
lists: GROTOAP
lists: ImpactStory
lists: JCB DataViewer
lists: Memento
lists: OME-TIFF Format
lists: OpenDOAR
lists: Open Journal Systems
lists: Paper Rejection Repository
lists: PLoS Impact Explorer
lists: RDFaCE
lists: Scholarly Open Access
lists: ShareLaTeX
lists: Mendeley
lists: W3C Provenance Incubator Group Wiki
lists: A.nnotate
lists: Annotation Ontology
lists: Support-of-PDF-annotations
lists: Neuroscience Information Framework
lists: AlzSWAN Knowledge Base
lists: ResearchCompendia
lists: resExomeDB
lists: SobekCM
lists: W3C Open Annotation Community Group
lists: Webmaker
lists: Wikispaces
lists: Mobile Assay
lists: WorkingWiki
lists: Overleaf
lists: Xournal
lists: Citation Style Language
lists: EnablingOpenScholarship
lists: JournalGuide
lists: Mindtouch DekiWiki
lists: Knowledge Blog
lists: DataCite
lists: FAIRsharing
lists: FigShare
lists: CiTO - the Citation Typing Ontology
lists: DOAJ - Directory of Open Access Journals
lists: Code4Lib Journal WordPress Customizations
lists: U-Compare
lists: SciCrunch Registry
lists: Google Docs
lists: CSIBS
lists: Europe PubMed Central
lists: ORNL DAAC Data Product Citation Policy
lists: Pensoft
lists: OpenCalais
lists: Universal Numerical Fingerprint
lists: FAIRSharing Catalogue of Standards
lists: Nanopub.org
lists: JISC Open Citations
lists: W3C Provenance Working Group
lists: Workflow4Ever
lists: Scholarly Electronic Publishing Bibliography
lists: ROARMAP: Registry of Open Access Repositories Mandatory Archiving Policies
lists: ROAR
lists: total impact.org
lists: Publish or perish
lists: Scalar
lists: PDFX
lists: lapdftext
lists: Cohere
lists: Data Citation Awareness
lists: DataCite Ontology
lists: Semantic MediaWiki
lists: Rubriq
lists: VisTrails
lists: RSC Prospect
lists: HyBrow (Hypothesis Browser)
lists: Biotea
lists: crowdLabs
lists: Argumentative Zoning: Information Extraction from Scientific Articles
lists: Synapse
lists: BioCreative
lists: EZID
lists: ResearchGate
lists: F1000: Faculty of 1000 Post-Publication Peer Review
lists: Acumen Consortium
lists: DOI
lists: GREC Corpus
lists: National Centre for Text Mining
lists: SPAR - Semantic Publishing and Referencing Ontologies
lists: re3data.org
lists: DataUp
lists: Open Archives Initiative - Object Reuse and Exchange Initiative
lists: Sapienta
lists: OBO
lists: GENIA Project: Mining literature for knowledge in molecular biology
lists: ORCID - Open Researcher and Contributor ID
lists: Wikibooks
lists: CERMINE
lists: CiteAb
lists: iAnnotate
lists: Eagle I
lists: AcroMine
lists: FACTA+.
lists: Open Provenance Model
lists: RightField
lists: SEEK
lists: BioPortal
lists: Reflect
lists: Ontology Development and Information Extraction
lists: PubMed
lists: Open PHACTS
lists: NIFSTD
lists: Open Provenance Model Vocabulary
lists: MEDIE
lists: Ontology for Biomedical Investigations
lists: Antibody Registry
lists: Semantic Web Applications in Neuromedicine (SWAN) Ontology
is related to: ShareLaTeX
is related to: ResearchCompendia
is related to: Overleaf
has parent organization: University of California at San Diego; California; USA
|
|
Gordon and Betty Moore Foundation |
|
Free, Public, The community can contribute to this resource, Acknowledgement requested |
|
nlx_149434 |
|
|
|
SCR_005334 |
FORCE11 - the Future of Research Communications and e-Scholarship, Force 11 |
2026-08-02 09:04:17 |
13 |
Debian
Resource Report
Resource Website
50+ mentions
|
Debian (RRID:SCR_006638)
|
Debian
|
software resource, software repository, data or information resource, database, source code
|
Debian is Linux distribution composed of free and open source software, developed by community supported Debian Project, which was established by Ian Murdock on August 16, 1993.Debian comes with over 59000 packages (precompiled software that is bundled up in nice format for easy installation on your machine), package manager (APT), and other utilities that make it possible to manage thousands of packages on thousands of computers as easily as installing single application.
|
operating system, software package, FASEB list
|
lists: GUARDD
lists: FACS
lists: SNAVI
lists: Fusion Analyser
lists: GEOquery
lists: MIMOSA
lists: RNAcontext
lists: AffyRNADegradation
lists: Patchwork
lists: GraBCas
lists: GENIE3
lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks
lists: Megraft
lists: PeptideProphet
lists: VARiD
lists: Flicker
lists: ARACHNE
lists: Quant
lists: riboPicker
lists: cn.FARMS
lists: ProteinProphet
lists: dbSTS
lists: flowPeaks
lists: SODOCK
lists: PEPPER
lists: POPBAM
lists: Micro-Analyzer
lists: MuTect
lists: Mfuzz
lists: PGS
lists: TAPyR
lists: ContEst
lists: FPSAC
lists: FlipFlop
lists: SRMA
lists: Pindel
lists: PhenoFam
lists: DSRC
lists: SOAP
lists: TriageTools
lists: StringTie
lists: SplitSeek
lists: BLASR
lists: Bowtie
lists: Barrnap
lists: MUSCLE
lists: GimmeMotifs
lists: massiR
lists: CUDA-EC
lists: Illuminator
lists: SplicePlot
lists: SLOPE
lists: PARalyzer
lists: VAAL
lists: BreakSeq
lists: ProGlycProt
lists: OmicsOffice for NGS SeqSolve
lists: TileQC
lists: NGSUtils
lists: QUAST
lists: GenomicTools
lists: piCALL
lists: SNPchip
lists: TALLYMER
lists: SABER
lists: wateRmelon
lists: QualiMap
lists: BFCounter
lists: ADMIXTURE
lists: OLIN
lists: DEXUS
lists: limmaGUI
lists: KAnalyze
lists: oneChannelGUI
lists: BeadDataPackR
lists: affylmGUI
lists: SAMBLASTER
lists: PyLOH
lists: fRMA
lists: CYCLE
lists: FARMS
lists: MACAT
lists: GlyProt
lists: YinOYang
lists: Sequedex
lists: DictyOGlyc
lists: ToppCluster
lists: Biocatalogue - The Life Science Web Services Registry
lists: ProbRNA
lists: HAPLOPAINTER
lists: Chilibot: Gene and Protein relationships from MEDLINE
lists: GERMLINE
lists: FACTA+.
lists: CisGenome
lists: asSeq
lists: unifiedWMWqPCR
lists: HOMOZYGOSITYMAPPER
lists: Prediction of Amyloid Structure Aggregation
lists: InterMine
lists: TANGO
lists: CQN
lists: MEME Suite - Motif-based sequence analysis tools
lists: pRESTO
lists: S-MART
lists: PhosphoSitePlus: Protein Modification Site
lists: myExperiment
lists: DINDEL
lists: Skylign
lists: PEDIGRAPH
lists: ADaCGH2
lists: CCAT
lists: AnimalTFDB
lists: TEMP
lists: CanSNPer
lists: Candida Genome Database
lists: SamSPECTRAL
lists: InteroPorc
lists: MetaBase
lists: Pecan
lists: cisRED: cis-regulatory element
lists: AffyPipe
lists: SHORTY
lists: BISC
lists: Pathway Commons
lists: Cake
lists: SNVer
lists: WebGeSTer DB
lists: FlyFactorSurvey
lists: ASPGD
lists: TcoF
lists: cpnDB: A Chaperonin Database
lists: ZOOM
lists: CAMERA - Collection of annotation related methods for mass spectrometry data
lists: BEETL-fastq
lists: NGSrich
lists: ShotGun
lists: Iterative Signature Algorithm
lists: SBARS
lists: SNPAAMapper
lists: Autophagy Database
lists: RUbioSeq
lists: COSMIC - Catalogue Of Somatic Mutations In Cancer
lists: EchoBASE
lists: QualitySNPng
lists: Pathview
lists: pymzML
lists: RopeBWT2
lists: ExomeDepth
lists: NetPathMiner
lists: leeHom
lists: PurBayes
lists: libCSAM
lists: SuperPred: Drug classification and target prediction
lists: HGNC
lists: Coding Potential Calculator
lists: T3DB
lists: CPTRA
lists: BioNumbers
lists: GATE
lists: ProRata
lists: GreenPhylDB
lists: BREAKDANCER
lists: GeneFisher
lists: tweeDEseq
lists: HYDEN
lists: Eukaryotic Linear Motif
lists: Primer3Plus
lists: MethylAid
lists: Triplex
lists: Distant Regulatory Elements
lists: hot scan
lists: MFEprimer
lists: Proteome Analyst Specialized Subcellular Localization Server
lists: mrsFAST
lists: BioJS
lists: FastSNP
lists: Gene Set Enrichment Analysis
lists: Pipeliner
lists: ms lims
lists: GenePattern
lists: rBiopaxParser
lists: QDNAseq
lists: MutDB
lists: Piano
lists: NovelSeq
lists: MAGE-TAB
lists: Database of Interacting Proteins (DIP)
lists: Weighted Gene Co-expression Network Analysis
lists: Blood Group Antigen Gene Mutation Database
lists: drFAST
lists: pairheatmap
lists: MiST - Microbial Signal Transduction database
lists: AltAnalyze - Alternative Splicing Analysis Tool
lists: SplicingCompass
lists: deFuse
lists: Assembly Based ReAligner
lists: ggbio
lists: miR-PREFeR
lists: ALDEx2
lists: HTqPCR
lists: NanoStringNorm
lists: T-profiler
lists: Snakemake
lists: jmzTab
lists: MIPgen
lists: Bpipe
lists: PoPoolation
lists: L-Measure
lists: MultiPhen
lists: PheWAS R Package
lists: InsertionMapper
lists: Quantitative Enrichment of Sequence Tags
lists: INMEX
lists: Segway - a way to segment the genome
lists: SeWeR - SEquence analysis using WEb Resources
lists: TagDust
lists: BSRD
lists: DER Finder
lists: Stem Cell Discovery Engine
lists: Kdetrees
lists: Tree and reticulogram REConstruction
lists: BioPig
lists: NCBI BioSystems Database
lists: Distributed String Mining Framework
lists: NEWT
lists: PILGRM
lists: Selectome: a Database of Positive Selection
lists: SVMerge
lists: Parseq
lists: SVseq
lists: Small Molecule Pathway Database
lists: miRNAKey
lists: DELLY
lists: Apo and Holo structures DataBase
lists: BioSample Database at EBI
lists: MetaPhyler
lists: MG-RAST
lists: SLIQ
lists: SOPRA
lists: Information Hyperlinked Over Proteins
lists: AmphoraNet
lists: SINA
lists: SSPACE
lists: Percolator: Semi-supervised learning for peptide identification from shotgun proteomics datasets
lists: STING Report
lists: G-BLASTN
lists: RNA-eXpress
lists: MethPipe
lists: SoyBase
lists: Strelka2
lists: RUM
lists: SPOT - Biological prioritization after a SNP association study
lists: VFS
lists: PHAge Search Tool
lists: MLTreeMap
lists: SEECER
lists: GeneTalk
lists: ERANGE
lists: rQuant
lists: NCBO Annotator
lists: ShoRAH
lists: Yabi
lists: ORMAN
lists: FusionMap
lists: CoPub
lists: Scripture
lists: SolexaQA
lists: Kismeth
lists: EMAGE Gene Expression Database
lists: SAMStat
lists: Knime4Bio
lists: Bis-SNP
lists: GobyWeb
lists: Jellyfish
lists: PRINSEQ
lists: PASS
lists: GSNAP
lists: SOAPaligner/soap2
lists: MethylViewer
lists: READSCAN
lists: DistMap
lists: MicrobesOnline
lists: mrFAST
lists: FLASH
lists: TIGRFAMS
lists: TMA Navigator
lists: Bambino
lists: TreQ
lists: SeqMap
lists: SeqTrace
lists: TRANSFAC
lists: GoFish
lists: MethylomeDB
lists: CLIPZ
lists: SerbGO
lists: ToppGene Suite
lists: ngsTools
lists: PePr
lists: DMRforPairs
lists: CharProtDB: Characterized Protein Database
lists: Expression Profiler
lists: SNPsandGO
lists: GoSurfer
lists: WEGO - Web Gene Ontology Annotation Plot
lists: SOURCE
lists: Stampy
lists: DiseaseMeth
lists: BLESS
lists: GraphProt
lists: GoPubMed
lists: ccPDB - Compilation and Creation of datasets from PDB
lists: Europe PubMed Central
lists: Dr.VIS - Human Disease-Related Viral Integration Sites
lists: DOMMINO - Database Of MacroMolecular INteractiOns
lists: DBETH - Database for Bacterial ExoToxins for Humans
lists: VirHostNet: Virus-Host Network
lists: GWASdb
lists: HFV Database
lists: HotRegion - A Database of Cooperative Hotspots
lists: eQuilibrator
lists: FunTree
lists: Cascade
lists: 959 Nematode Genomes
lists: ICEberg
lists: IndelFR - Indel Flanking Region Database
lists: IDEAL - Intrinsically Disordered proteins with Extensive Annotations and Literature
lists: ProRepeat
lists: NRG-CING
lists: InterEvol database
lists: MMMDB - Mouse Multiple tissue Metabolome DataBase
lists: Newtomics
lists: MIPModDB
lists: DistiLD - Diseases and Traits in LD
lists: Polbase
lists: UMD-BRCA1/ BRCA2 databases
lists: ScerTF
lists: VIRsiRNAdb
lists: ProPortal
lists: OGEE - Online GEne Essentiality database
lists: RecountDB
lists: PRED-GPCR
lists: RNA CoSSMos
lists: PRED-SIGNAL
lists: SNPedia
lists: SpliceDisease
lists: HMM-TM
lists: deepSNV
lists: OMPdb
lists: PRED-LIPO
lists: VICUNA
lists: Predictive Networks
lists: COEUS
lists: GeneTrail
lists: epigenomix
lists: ADGO
lists: SRAdb
lists: QCGWAS
lists: Flycircuit
lists: MouseBook
lists: Immune Epitope Database and Analysis Resource (IEDB)
lists: SitEx
lists: GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
lists: MSIsensor
lists: TSSer
lists: ATRHUNTER
lists: Phytozome
lists: Decombinator
lists: ViralZone
lists: COLT-Cancer
lists: Gene Expression Database
lists: BEDTools
lists: waviCGH
lists: Pseudomonas Genome Database
lists: BIGpre
lists: MyHits
lists: CAPS Database
lists: SpliceTrap
lists: EagleView
lists: IMGT/LIGM-DB
lists: RIKEN integrated database of mammals
lists: COHCAP
lists: DARC - Database for Aligned Ribosomal Complexes
lists: canSAR
lists: GWAMA
lists: AutismKB
lists: zfishbook
lists: PomBase
lists: Myrna
lists: PLEXdb - Plant Expression Database
lists: RamiGO
lists: PhenoM - Phenomics of yeast Mutants
lists: IMGT/GENE-DB
lists: HIstome: The Histone Infobase
lists: SCOP: Structural Classification of Proteins
lists: CuticleDB
lists: agriGO
lists: Expression Database in 4D
lists: ESEfinder 3.0
lists: TriTrypDB
lists: VIDA
lists: Database of Arabidopsis Transcription Factors
lists: Atlas of Genetics and Cytogenetics in Oncology and Haematology
lists: AgBase
lists: Hyper Cell Line Database
lists: Midbody, Centrosome and Kinetochore
lists: Chromosome 7 Annotation Project
lists: MfunGD - MIPS Mouse Functional Genome Database
lists: Taipan
lists: VISTA Browser
lists: T1DBase
lists: lobSTR
lists: VISTA Enhancer Browser
lists: MEROPS
lists: Gene Array Analyzer
lists: Network Analysis, Visualization and Graphing TORonto
lists: Candidate Genes to Inherited Diseases
lists: Single Nucleotide Polymorphism Spectral Decomposition (SNPSpD)
lists: eTBlast
lists: hiPathDB - human integrated Pathway DB with facile visualization
lists: MuSiC
lists: miRNEST
lists: QuasiRecomb
lists: neXtProt
lists: DNAtraffic
lists: BeeBase
lists: NetOGlyc
lists: GenoTan
lists: GMAP
lists: LegumeIP
lists: SeqBuster
lists: elastix
lists: iMir
lists: WEBLOGO
lists: MaCH-Admix
lists: Pathema
lists: SNPinfo Web Server
lists: MOSCPHASER
lists: NEBcutter
lists: Atlas2
lists: FGDP
lists: Velvet
lists: HomSI
lists: MicroSNiPer
lists: MIRA
lists: ALLPATHS-LG
lists: CUPSAT
lists: SVDetect
lists: omiRas
lists: CopySeq
lists: MutSig
lists: HapFABIA
lists: DIANA-LncBase
lists: MutationTaster
lists: HMCan
lists: Geneious
lists: kmer-SVM
lists: SICER
lists: ZINBA
lists: Pedimap
lists: MAnorm
lists: PlantTFcat
lists: MethMarker
lists: NPS
lists: PeakRanger
lists: SEAL
lists: OligoArray
lists: PSAR-Align
lists: CEQer
lists: CloudBurst
lists: nucleR
lists: RACE
lists: Asterias
lists: PatMaN
lists: RobiNA
lists: LitInspector
lists: Btrim
lists: ArrayAnalysis.org
lists: CANGS
lists: GeneStitch
lists: ProDesign
lists: JiffyNet
lists: AlienTrimmer
lists: GenoREAD
lists: HSLPred
lists: CancerResource
lists: FABIA
lists: PlnTFDB
lists: easyRNASeq
lists: OBI-Warp
lists: PREDDIMER
lists: ECHO
lists: ICPL ESIQuant
lists: PRIDE Converter 2
lists: SlideSort-BPR
lists: COBRApy
lists: MFPaQ
lists: TopHat-Fusion
lists: miRPlant
lists: SNP ratio test
lists: compomics-utilities
lists: PLEK
lists: multiplierz
lists: Allim
lists: ISDTool
lists: NetCoffee
lists: MToolBox
lists: Scalpel
lists: DNaseR
lists: LocalAli
lists: NAIL
lists: iceLogo
lists: GPU-Meta-Storms
lists: AMS
lists: rqubic
lists: ANNOVAR
lists: A5-miseq
lists: PhosphoSiteAnalyzer
lists: Cell motility
lists: MethylCoder
lists: CAZy- Carbohydrate Active Enzyme
lists: CPFP
lists: GENE-counter
lists: PoolHap
lists: LOCAS
lists: CloudAligner
lists: HeurAA
lists: Mouse Genome Database
lists: MitoBreak
lists: PolyPhen: Polymorphism Phenotyping
lists: GSA-SNP
lists: featureCounts
lists: Crossbow
lists: CSAR
lists: seqMINER
lists: BEADS
lists: IUPHAR/BPS Guide to Pharmacology
lists: QuantiSNP
lists: Cube-DB
lists: Death Domain database
lists: psRNATarget
lists: DSAP
lists: PlantNATsDB - Plant Natural Antisense Transcripts DataBase
lists: GeneSigDB
lists: MACS
lists: NGSmethDB
lists: GENSCAN
lists: INCLUSive
lists: MINAS - Metal Ions in Nucleic AcidS
lists: Composition Profiler
lists: NNcon
lists: EGSEA
lists: SCRATCH
lists: Telescoper
lists: Buccaneer
lists: ProtTest
lists: Morpheus
lists: KAVIAR
lists: DISEASES
lists: SPEX2
lists: RAST Server
lists: GeneWise
lists: Crystallography and NMR System (CNS)
lists: FATCAT
lists: Membrane Protein Explorer
lists: LTR_Finder
lists: PALEOMIX
lists: TISSUES
lists: MetaMapR
lists: primers4clades
lists: MS-GF+
lists: PLAN2L
lists: Off-Spotter
lists: ProteomicsDB
lists: CHiCAGO
lists: SC3
lists: Bio-tradis
lists: ApiDB CryptoDB
lists: HISAT2
lists: PhyD3
lists: LoRDEC
lists: Bamtools
lists: ALTER
lists: MultiQC
lists: TFBS
lists: EnrichmentMap
lists: Poretools
lists: Exonerate
lists: 3D-footprint
lists: Genesis
lists: oligo
lists: DISULFIND
lists: Fastml
lists: mentha
lists: Oufti
lists: eXpression2Kinases
lists: IDEPI - IDentify EPItopes
lists: SMAGEXP
lists: ProCon - PROteomics CONversion
lists: TRANSIT
lists: DINIES
lists: Splicing Express
lists: FluxModeCalculator
lists: Lifebit Deploit
lists: ngsRelate
lists: SARTools
lists: OmicsNet
lists: SPICE
lists: Microscopy Image Browser
lists: Thunder STORM
lists: clusterProfiler
lists: NetworkAnalyst
lists: ANOCVA
lists: Rsubread
lists: Subread
lists: ConsensusClusterPlus
lists: CIBERSORT
lists: FRETBursts
lists: CCTOP
lists: scran
lists: ScaffMatch
lists: Heatmapper
lists: Goseq
lists: PRSice
lists: UMI-tools
lists: Proovread
lists: BinPacker
lists: JAMM
lists: CentroidFold
lists: ComplexHeatmap
lists: PatchDock
lists: FastProject
lists: ExPASy ABCD database
lists: Gigwa
lists: shinyGEO
lists: GeSeq
lists: EMBOSSMatcher
lists: Geneshot
lists: Mousebytes
lists: trimAl
lists: AmoebaDB
lists: STRUCTURE
lists: PASTEClassifier
lists: NetPhos
lists: HiC-Pro
lists: SWISS-MODEL
lists: Blood Exposome Database
lists: HingeProt
lists: ChiCMaxima
lists: ProtParam Tool
lists: GalaxyRefine
lists: FlowCal
lists: SpydrPick
lists: R/qtl2
lists: Roary
lists: SIGNOR
lists: Protein Interactions Calculator
lists: REDIportal
lists: MaxAlign
lists: Minimap2
lists: PrognoScan
lists: GPS-SUMO
lists: Signaling Pathways Project
lists: ProSA-web
lists: GalaxyWEB
lists: iTOL
lists: EpiModel
lists: rVista
lists: AlgPred
lists: D-GENIES
lists: Robetta
lists: GOnet
lists: E-CRISP
lists: STAMP
lists: Batch Web CD-Search Tool
lists: aroma.light
lists: Annotree
lists: Database of Secondary Structure Assignments
lists: Clustal Omega
lists: DESeq
lists: discoSnp
lists: vcflib
lists: Genome BioInformatics Research Lab - gff2ps
lists: Primer3
lists: BioPerl
lists: Rainbow
lists: RNAhybrid
lists: Clustal W2
lists: Apollo
lists: IgBLAST
lists: Ray
lists: khmer
lists: Stacks
lists: Predictions for Entire Proteomes
lists: DIALIGN
lists: EBSeq
lists: Minia
lists: SAMtools/BCFtools
lists: Artemis: Genome Browser and Annotation Tool
lists: NCBI BLAST
lists: biobambam
lists: VICMpred
lists: Staden Package
lists: Bowtie 2
lists: RAxML
lists: WHAM
lists: VarScan
lists: Bismark
lists: ea-utils
lists: HTSeq
lists: Vienna RNA
lists: Regulatory Sequence Analysis Tools
lists: BitSeq
lists: COILS: Prediction of Coiled Coil Regions in Proteins
lists: HilbertVis
lists: BRIG
lists: Unipro UGENE
lists: GBrowse
lists: Sickle
lists: AmpliconNoise
lists: FreeBayes
lists: tRNAscan-SE
lists: CD-HIT
lists: SSAKE
lists: MACH
lists: Segemehl
lists: BEAST
lists: Pscan-ChIP
lists: cutadapt
lists: Oases
lists: CGView
lists: SOAPsnp
lists: T-Coffee
lists: Kalign
lists: Circos
lists: Trinity
lists: Flexbar
lists: SIFT
lists: ProbCons
lists: OpenMS
lists: RSEM
lists: Glimmer
lists: GROMACS
lists: CummeRbund
lists: edgeR
lists: DNAcopy
lists: TopHat
lists: SortMeRNA
lists: LIMMA
lists: AMOS
lists: Cufflinks
lists: Nanopolish
lists: GMA
lists: Prokka
lists: phyloseq
lists: SeqPrep
lists: precrec
lists: Atac
lists: PAML
lists: KisSplice
lists: StoatyDive
lists: IMGT-ONTOLOGY
lists: KAT
lists: SeaView
lists: FastTree
lists: Crux tandem mass spectrometry analysis software
lists: rCASC
lists: minet
lists: becas
lists: tximport
lists: globaltest
lists: CheckM
lists: BLINK
lists: mosdepth
lists: bwtool
lists: dcmqi
lists: Pilon
lists: ASHLAR
lists: metagen
lists: COPASI
lists: BUSCO
lists: bridge
lists: TGS-GapCloser
lists: NiftyPET
lists: Blobtools
lists: THESIAS
lists: Fcirc
lists: chimerascan
lists: GLUE
lists: SwiftOrtho
lists: HaploReg
lists: ScanITD
lists: andi
lists: metahdep
lists: ImaGene
lists: Jalview
lists: MeroX
lists: qrqc
lists: BioNix
lists: MiXCR
lists: casper
lists: libmgf
lists: sleuth
lists: imDEV
lists: miRDB
lists: yaqcaffy
lists: NiftyFit
lists: mlgt
lists: SMARTdenovo
lists: HH-suite
lists: StatAlign
lists: affy
lists: shovill
lists: Fiji
lists: Racon
lists: rbsurv
lists: quantsmooth
lists: tensorflow
lists: seqbias
lists: ngs.plot
lists: bsseq
lists: MGnify
lists: dyebias
lists: h5vc
lists: ascat
lists: Cuffdiff
lists: mitopred
lists: OrthoFinder
lists: PIRATE
lists: Bridger
lists: Eoulsan
lists: VEnCode
lists: eTRIKS
lists: fracridge
lists: lumi
lists: genomation
lists: Hippocampome.org
lists: SymPy
lists: icy
lists: GADMA
lists: HaTSPiL
lists: XL-mHG
lists: ropls
lists: scanpy
lists: MethBase
lists: sabre
lists: plgem
lists: MyGene.info
lists: CRISPRcasIdentifier
lists: biobakery
lists: VETA
lists: EpiEstim
lists: HyPhy
lists: ODAM
lists: BISE
lists: docker4seq
lists: qcmetrics
lists: Pavian
lists: genehunter-imprinting
lists: smashpp
lists: NanoSim
lists: SimVascular
lists: BSA4Yeast
lists: minfi
lists: TDimpute
lists: RepeatScout
lists: neuroelectro
lists: MRIcron
lists: RepeatFiller
lists: ShinyLearner
lists: CRISPR-ERA
lists: CRISPR-P
lists: Warp
lists: GEMINI
lists: MAFFT
lists: TransDecoder
lists: Phenoscape
lists: PhenoMeNal
lists: les
lists: Laniakea
lists: CandiMeth
lists: eisa
lists: ProP Server
lists: ggtree
lists: scVelo
lists: PathwayMatcher
lists: charm
lists: Telescope
lists: skewer
lists: multtest
lists: Human Neocortical Neurosolver
lists: beadarray
lists: BioBERT
lists: PlotTwist
lists: GraphClust2
lists: METAREP
lists: QIIME
lists: halSynteny
lists: scater
lists: Galaxy scater
lists: larvalign
lists: iontree
lists: VAPPER
lists: GENCODE
lists: Datanator
lists: Bio2BEL
lists: UALCAN
lists: ffpe
lists: MCScan
lists: VisR
lists: Metascape
lists: GemSIM
lists: EvidenceFinder
lists: pepwheel
lists: RDXplorer
lists: bcbio-nextgen
lists: OpenWorm
lists: ActiveDriver
lists: QuickNII
lists: timecourse
lists: Bionitio
lists: ggplot2
lists: TCW
lists: SPM
lists: pvac
lists: GeneMarkS-T
lists: ascend
lists: RatMine
lists: CRISPRdirect
lists: phantompeakqualtools
lists: prank
lists: refgenie
lists: NanoPipe
lists: vsn
lists: PAFScaff
lists: odMLtables
lists: biospytial
lists: NeuroChaT
lists: clustergrammer
lists: glycomedb
lists: CLIP-Explorer
lists: pheatmap
lists: EnteroBase
lists: GigaSOM.jl
lists: bio.tools
lists: SPP
lists: lapmix
lists: EHRtemporalVariability
lists: HmtVar
lists: SnpHub
lists: Online Peri-Event Time Histogram for Open Ephys
lists: NMRProcFlow
lists: QGIS
lists: Flye
lists: kallisto
lists: clipcrop
lists: cn.mops
lists: UniCarbKB
lists: pickgene
lists: PsyGeNET
lists: seq-annot
lists: PASA
lists: ReadqPCR
lists: breseq
lists: e-Driver
lists: sim4cc
lists: PhylomeDB
lists: fastqz
lists: PerM
lists: rnaQUAST
lists: NCBI BioProject
lists: PEMer
lists: metabnorm
lists: FusionCatcher
lists: STAR
lists: VCFtools
lists: UniCarb-DB
lists: NormqPCR
lists: SnpEff
lists: DecGPU
lists: gprege
lists: VirusMINT
lists: nondetects
lists: circlize
lists: SAMTOOLS
lists: Neuroscience Information Framework
lists: Dali Server
lists: IRanges
lists: dbEST
lists: Genomic Ranges
lists: eProbalign
lists: Cistrome
lists: DIANA-mirPath
lists: BpForms
lists: GenomicFeatures
lists: SOAPdenovo
lists: BcForms
lists: 4See
lists: ABNER
lists: A Classification of Mobile genetic Elements
lists: Addgene
lists: BadMedicine
lists: ADMIXMAP
lists: ADMIXTOOLS
lists: ALCHEMY
lists: AETIONOMY
lists: ABS: A Database of Annotated Regulatory Binding Sites From Orthologous Promoters
lists: ALBERT
lists: ALOHOMORA
lists: Alternate splicing gallery
lists: Allele Frequencies in Worldwide Populations
lists: AmpliconTagger
lists: Molecular Dynamics Workflow (BioKepler)
lists: ape
lists: Alta-Cyclic
lists: Assisted Model Building with Energy Refinement (AMBER)
lists: Aroma.affymetrix
lists: ANDES
lists: ASSOCIATIONVIEWER
lists: ArrayMiner
lists: ASPEX
lists: The Alternatve Splicing Database
lists: AutoAssemblyD
lists: AutoDock Vina
lists: BAIT
lists: BamView
lists: Avogadro
lists: ArrayPipe
lists: Athena
lists: BLAT
lists: BARS
lists: BayesEpiModels
lists: BatMeth
lists: BeetleBase
lists: BBSeq
lists: naiveBayesCall
lists: BarraCUDA
lists: BCBtoolkit
lists: BioConda
lists: BAR
lists: BiG-SLiCE
lists: SVM based method for predicting beta hairpin structures in proteins
lists: betaVAEImputation
lists: BiNGO: A Biological Networks Gene Ontology tool
lists: Bioinformatics Toolkit
lists: BioCarta Pathways
lists: Biopieces
lists: Bio++
lists: BioPlex
lists: BioSimulations
lists: BRAIN
lists: BOMP: beta-barrel Outer Membrane protein Predictor
lists: biomaRt
lists: bioSyntax
lists: Bionimbus
lists: BioSimulators
lists: bioRxiv
lists: Breakpointer
lists: CiLiQuant
lists: BSVF
lists: BS Seeker
lists: Bs-Seeker2
lists: BWA
lists: CARD
lists: Canu
lists: Cell Image Library (CIL)
lists: BRB-ArrayTools
lists: CATALYST
lists: CATH: Protein Structure Classification
lists: CAT
lists: CEM
lists: CASPAR
lists: CHEBI
lists: ChimeraSlayer
lists: CATdb: a Complete Arabidopsis Transcriptome database
lists: ChemSpider
lists: Chipster
lists: CCREL
lists: cisTEM
lists: circlncRNAnet
lists: Centrifuge Classifier
lists: Cancer Genome Anatomy Project
lists: ChIPMunk
lists: Chromas
lists: CiteFuse
lists: CRCView
lists: ChiRA
lists: ClinVar
lists: ClinTrajAn
lists: clustLasso
lists: CleanEx
lists: Clinotator
lists: CNVer
lists: ComiR
lists: CODEHOP
lists: ClustVis
lists: Comparative Metatranscriptomics Workflow
lists: CMap
lists: CorMut
lists: CNV-seq
lists: Coot
lists: CITE-seq-Count
lists: CoCo
lists: CopyDetective
lists: Chromosome Scale Assembler
lists: cortex
lists: ConDeTri
lists: CRISPy-web
lists: CONTRA
lists: CovalentDock Cloud
lists: CUDASW++
lists: COGEME Phytopathogenic Fungi and Oomycete EST Database
lists: DANPOS2
lists: DOGMA
lists: CorrDrugTumorMSI
lists: DAMBE
lists: D-EE
lists: CoryneRegNet
lists: ΔG prediction server
lists: DIAMOND
lists: CYANA
lists: Datasets2Tools
lists: DEXSeq
lists: DichroWeb
lists: NCBI database of Genotypes and Phenotypes (dbGap)
lists: DBTSS: Database of Transcriptional Start Sites
lists: dbSNP
lists: DiffBind
lists: DETONATE
lists: DiProGB
lists: Descriptions of Plant Viruses
lists: DIME
lists: DicomTypeTranslator
lists: CSDeconv
lists: Dictyostelium discoideum genome database
lists: DSK
lists: DGIdb
lists: DisProt - Database of Protein Disorder
lists: DOMINE: Database of Protein Interactions
lists: eDMR
lists: ECLIPSE
lists: Experimental Design Assistant
lists: Dissect
lists: Evolutionary Couplings Server
lists: Enrichr
lists: ensembldb
lists: European Genome phenome Archive
lists: EBCall
lists: Ensembl Genomes
lists: EMAN
lists: ENIGMA
lists: DISENTANGLER
lists: Entrez Gene
lists: Ensembl
lists: eQtlBma
lists: EpiGRAPH
lists: EpiDISH R package
lists: Examl
lists: epitopepredict
lists: DrivAER
lists: Variant Effect Predictor
lists: Epigenomics Workflow on Galaxy and Jupyter
lists: Eukaryote Genes
lists: Evex
lists: FateID
lists: EXOMEPICKS
lists: European Variation Archive (EVA)
lists: FANTOM DB
lists: Genome Annotation Generator
lists: FireDB
lists: FGENESH
lists: FluoRender
lists: FLOSS
lists: fineSTRUCTURE
lists: FastQC
lists: FINDbase Worldwide
lists: ExpressYourself
lists: fgsea
lists: FuncAssociate: The Gene Set Functionator
lists: NHLBI Exome Sequencing Project (ESP)
lists: FlyBase
lists: FlexProt: flexible protein alignment
lists: GASV
lists: Fugu Genome Project
lists: Full-Length cDNA Database
lists: FragGeneScan
lists: FunRich: Functional Enrichment analysis tool
lists: FlowSOM
lists: GASSST
lists: GeMoMa
lists: An Integrated Multiple Structure Visualization and Multiple Sequence Alignment Application
lists: GEDIT
lists: VBASE2
lists: Genome Database for Rosaceae
lists: GenePattern Notebook
lists: G-Mo.R-Se
lists: FusionHunter
lists: Genome Projector
lists: GeneCodis
lists: GEN3VA
lists: GENERECON
lists: GEMB
lists: GeCo3
lists: Gene3D
lists: Genomic Annotation in Livestock for positional candidate LOci
lists: Gene Expression Atlas
lists: GeneProf
lists: Genome Trax
lists: Genome Reviews
lists: GATK
lists: FunCluster
lists: GFINDer: Genome Function INtegrated Discoverer
lists: GermOnline
lists: GeneSeeker
lists: Gmove
lists: Genometa
lists: GensearchNGS
lists: HARSH
lists: Gibbs Motif Sampler
lists: Generic GO Term Mapper
lists: Genomedata
lists: GMcloser
lists: GEO2R
lists: Gramene
lists: Genome Aggregation Database
lists: GoMapMan
lists: GEPAT
lists: Git
lists: GNUMAP
lists: Generic GO Term Finder
lists: Graph2GO
lists: Gene Ontology
lists: Gaggle
lists: GO2MSIG
lists: GRASS
lists: Bioinformatic Harvester IV (beta) at Karlsruhe Institute of Technology
lists: Genovar
lists: HASTE-project
lists: H-InvDB
lists: Homologous Sequences in Ensembl Animal Genomes
lists: Google
lists: IMGT/HLA
lists: Human Gene Mutation Database
lists: GTDB-Tk
lists: G protein receptor interaction feature finding instrument
lists: HubMed
lists: HPEPDOCK Server
lists: HUGE - Human Unidentified Gene-Encoded large proteins
lists: HAPLOCLUSTERS
lists: HiCUP
lists: International HapMap Project
lists: HiPipe
lists: HTR
lists: HINT
lists: Hybrid-denovo
lists: HS-TDT
lists: Human Gene Connectome Server
lists: HSSP
lists: iDASH
lists: hyfi: software suite for binding site search
lists: HUDSEN
lists: IMGT/StatClonotype
lists: I-TASSER
lists: ImJoy
lists: IMEx - The International Molecular Exchange Consortium
lists: IMG System
lists: HCLUST
lists: Human Splicing Finder
lists: lme4
lists: Identifiers.org
lists: IPD - Immuno Polymorphism Database
lists: IntEnz- Integrated relational Enzyme database
lists: IBIS: Inferred Biomolecular Interactions Server
lists: IMGT - the international ImMunoGeneTics information system
lists: Integr8 : Access to complete genomes and proteomes
lists: IMGT HighV-QUEST
lists: Isaac
lists: Interolog/Regulog Database
lists: InterProScan
lists: IRESite
lists: IPI
lists: inGAP
lists: ISFinder
lists: KGGSeq
lists: iPiG
lists: IsoLasso
lists: J-Express
lists: JGI Genome Portal
lists: IsaCGH
lists: lncRNAdb
lists: LDSELECT
lists: IsoEM
lists: Database oDatabase of Predicted Subcellular Localization for Eukaryotic PDB Chainsf Predicted Subcellular Localization for Eukaryotic PDB Chains
lists: IMG
lists: LTR_FINDER_parallel
lists: LAST
lists: MBGD - Microbial Genome Database
lists: jmzML
lists: OntoQuest
lists: LOCUSMAP
lists: MaizeGDB
lists: long-read-tools
lists: LRPath
lists: Magic
lists: LS-SNP/PDB
lists: LOCATE: subcellular localization database
lists: Mammalian Gene Collection
lists: Machado
lists: MACiE
lists: Maqview
lists: LitMiner
lists: MAKER
lists: MEBS: Multigenomic Entropy-Based Score
lists: MapSplice
lists: Mascot
lists: mapDamage
lists: MEGAHIT
lists: Metabolomics Workbench
lists: Libra
lists: ML Repo
lists: MARRVEL
lists: Maq
lists: MentaLiST
lists: MB-GAN
lists: MetaCyc
lists: MAP
lists: MeQA
lists: Metastats
lists: MatrixDB
lists: MetAMOS
lists: MeRIP-PF
lists: MendelIHT.jl
lists: metaXplor
lists: lsa_slurm
lists: MetaCyto
lists: UEA sRNA Workbench
lists: MetaVelvet
lists: MMAPPR
lists: MBCluster.Seq
lists: MIP Scaffolder
lists: MERMAID
lists: MobiDB
lists: MPDA
lists: MaSuRCA
lists: MICSA
lists: MIRIAM Resources
lists: miROrtho: the catalogue of animal microRNA genes
lists: NCBI
lists: proMODMatcher
lists: miRBase
lists: MethylExtract
lists: SCIPION
lists: MPscan
lists: mirTools
lists: MISA
lists: MP3 tool
lists: Mspire-Simulator
lists: Multi-omics Visualization Platform
lists: mrCaNaVaR
lists: MoDIL
lists: MultiLoc
lists: MULTIDISEQ
lists: Noncoding RNA database
lists: MRFSEQ
lists: MizBee
lists: Multiple Myeloma survival predictor
lists: Mouse Phenome Database (MPD)
lists: Nucleic Acid Database
lists: Myriads
lists: miRpathDB
lists: MUMmer
lists: mzMatch
lists: NeLS
lists: NEST Simulator
lists: MutPred
lists: NEMBASE
lists: Open Babel
lists: NetMHCpan Server
lists: MULTIMAP
lists: NCBI Genome Workbench
lists: Nephele
lists: NCBI Probe
lists: Ngmlr
lists: Necklace
lists: NetNGlyc
lists: NucleoFinder
lists: NeuroMatic
lists: Genotyping
lists: NGSView
lists: NOrMAL
lists: Opera
lists: NURD
lists: ngLOC
lists: NeSSM
lists: NanoGalaxy
lists: ObjTables
lists: nmrML
lists: nsSNPAnalyzer
lists: OsiriX Medical Imaging Software
lists: parSMURF
lists: Open Trials
lists: Ngs backbone
lists: PartiGeneDB
lists: Pfam
lists: Oncodrive-fm
lists: Online Resource for Community Annotation of Eukaryotes
lists: PanoramaWeb
lists: Omics Data Paper Generator
lists: Pathway Tools
lists: PDBe - Protein Data Bank in Europe
lists: Pash 3.0
lists: Orientations of Proteins in Membranes database
lists: Pathbase
lists: PEDHUNTER
lists: PAZAR
lists: Peakzilla
lists: PeakAnalyzer
lists: Pairwise Conservation Scores - An Algorithm to Identify Conserved K-mers
lists: Pedigree-Draw
lists: OLego
lists: Parliament2
lists: PEDIGREEQUERY
lists: PeakSeq
lists: PEDPEEL
lists: PhaseME
lists: PHI-base
lists: PHYLIP
lists: PDB Finder
lists: Phylogeny.fr
lists: PRICE
lists: PennSeq
lists: Illuminating the Druggable Genome
lists: Philius
lists: Phenotypes and eXposures Toolkit
lists: PhyloPat
lists: PicTar
lists: Eddy Lab Software
lists: Protein Information Resource
lists: PhyML
lists: PhenoMan
lists: PeptideAtlas
lists: PIRSF
lists: Polygenic Pathways
lists: PLANTTFDB
lists: pNovo+
lists: PLINK/SEQ
lists: PEMA
lists: pFind Studio: pLink
lists: PM4NGS
lists: PrimerBank
lists: ProSight Lite
lists: PolymiRTS
lists: Phospho.ELM
lists: Plant Co-expression Annotation Resource
lists: Rampart
lists: Protein Prospector
lists: ProteomeXchange
lists: PRED-TMBB
lists: Proteomics Identifications (PRIDE)
lists: PS-Plant Framework
lists: ProtChemSI
lists: PRADA
lists: Pyntacle
lists: PubCrawler
lists: ProfCom - Profiling of complex functionality
lists: PrimerSeq
lists: PyBEL
lists: PubChem
lists: PubGene
lists: R/QTLBIM
lists: QGene
lists: QMSIM
lists: QmRLFS-finder
lists: PolyPhred
lists: QSRA
lists: Preseq
lists: ReactomePA
lists: QuickGO
lists: QUMA
lists: RAREMETAL
lists: REDItools
lists: The Human Protein Atlas
lists: rSNP Guide
lists: PyRosetta
lists: RefSeq
lists: RaptorX
lists: Reaper - Demultiplexing trimming and filtering sequencing data
lists: RegulonDB
lists: RESID
lists: R Project for Statistical Computing
lists: Reactome
lists: Rdisop
lists: RepeatModeler
lists: RESCUE-ESE
lists: Relate
lists: Reptile
lists: R-SAP
lists: riborex
lists: RNA-SeQC
lists: QuPath
lists: RNA FRABASE - RNA FRAgments search engine and dataBASE
lists: RADAR-base
lists: RiboTaper
lists: SAMMate
lists: rna-stability
lists: RightField
lists: SASGENE
lists: RNAplex
lists: runBioSimulations
lists: ResponseNet
lists: SilkDB
lists: Scansite
lists: Research-tested Intervention Programs (RTIPs)
lists: sapFinder
lists: SeqtrimNEXT
lists: RNA Virus Database
lists: SALT
lists: SEEK
lists: Seqtk
lists: REDfly Regulatory Element Database for Drosophilia
lists: SAFA Footprinting Software
lists: SeqExpress
lists: ROMPREV
lists: SeqSaw
lists: SeqEM
lists: SHELX
lists: rSeq
lists: SHARCGS
lists: rnaSPAdes
lists: SimSeq
lists: SGA
lists: Sherman
lists: SeQuiLa
lists: SGD
lists: ShinyGO
lists: SISYPHUS
lists: SVA
lists: ASC
lists: SIMULATE
lists: SILVA
lists: SNP HITLINK
lists: SIBLINK
lists: SKAT
lists: SimRare
lists: SnoopCGH
lists: SMRT View
lists: SASQUANT
lists: SIMPED
lists: Sniffles
lists: SIBMED
lists: SMI Services
lists: SOAPnuke
lists: SGN
lists: SIDER
lists: SMART
lists: ShortFuse
lists: SWEEP
lists: SnpSift
lists: SOAPfusion
lists: SNPTEST
lists: SwissTree
lists: TopFIND
lists: Solas
lists: SoupX
lists: STEPS
lists: FASTSLINK
lists: SpliceMap
lists: StSNP
lists: Supersplat
lists: Sybil
lists: TAPIR: target prediction for plant microRNAs
lists: SWISS-2DPAGE
lists: SISSRs
lists: T-lex
lists: SUMSTAT
lists: TAGS
lists: Spot
lists: TDR Targets Database
lists: TDT-PC
lists: SpoTyping
lists: SynTView
lists: SynergyFinder
lists: TRAL
lists: SPIKE
lists: Transporter Classification Database
lists: TransmiR
lists: TASSEL
lists: SYFPEITHI: A Database for MHC Ligands and Peptide Motifs
lists: FLUX CAPACITOR
lists: TB PORTALS
lists: TAndem Splice Site DataBase
lists: VirusHunter
lists: topGO
lists: TMAJ
lists: ApiDB ToxoDB
lists: tradeSeq
lists: TreeDyn
lists: Trans-ABySS
lists: IQ-TREE
lists: Biological General Repository for Interaction Datasets (BioGRID)
lists: Trowel
lists: TomoMiner
lists: UTRdb/UTRsite
lists: TWOLOC
lists: V-Phaser 2
lists: TropGENE DB
lists: Trim Galore
lists: TRACESPipe
lists: Gene Index Project
lists: Tool recommender system in Galaxy
lists: WEIGHTED FDR
lists: UTGB Toolkit
lists: xia2 pipeline
lists: USeq
lists: TRiCoLOR
lists: UniParc
lists: VAAST
lists: variancePartition
lists: VirusSeq
lists: Webproanalyst
lists: XPN
lists: WSsas - Web Service for the SAS tool
lists: UNAFold
lists: zUMIs
lists: VaDiR
lists: Yeast Search for Transcriptional Regulators And Consensus Tracking
lists: Vector Alignment Search Tool
lists: Zebrafish Information Network (ZFIN)
lists: YASARA
lists: Vmatch
lists: VFDB - Virulence Factors of Bacterial Pathogens
lists: Xenbase
lists: Visualization and Analysis of Networks containing Experimental Data (VANTED)
lists: VisSR
lists: AutoDock
lists: dbEST
lists: DESeq2
lists: DNA DataBank of Japan (DDBJ)
lists: FASTX-Toolkit
lists: SUP
lists: Trimmomatic
lists: VIPERdb
lists: ABySS
lists: AdapterRemoval
lists: Alien-hunter
lists: ALTree
lists: Integrative Genomics Viewer
lists: RDKit: Open-Source Cheminformatics Software
lists: Acacia
lists: AMAP
lists: Anfo
lists: Aragorn
lists: Arden
lists: Ariba
lists: ART
lists: Augustus
lists: Axe
lists: Baitfisher
lists: BALLView
lists: BEAGLE
lists: BEDOPS
lists: eXpress
lists: BOXSHADE 3.21
lists: Cassiopee
lists: Cdbfasta
lists: Circlator
lists: Clearcut
lists: Clonalframe
lists: ClonalOrigin
lists: Computational Morphometry Toolkit
lists: Concavity
lists: CRAC
lists: cwltool
lists: Daligner
lists: Datamash
lists: DNACLUST
lists: DWGSIM
lists: Eigensoft
lists: EMBOSS
lists: ESTScan
lists: EULER-SR
lists: FASTLINK
lists: FigTree
lists: fitGCP
lists: Fsm-lite
lists: Gamgi
lists: GASiC
lists: Ghemical
lists: GIIRA
lists: Grinder
lists: Gwyddion
lists: Hmmer
lists: HTQC
lists: IDBA-UD
lists: ImageJ
lists: Infernal
lists: PyMOL
lists: GenABEL
lists: Biopython
lists: QuorUM
lists: Prodigal
lists: QuteMol
lists: PRESTO: Genetic Association Analysis Software
lists: Probalign
lists: Computational Structural Biology Toolbox
lists: LEfSe
lists: Happy
lists: jModelTest
lists: KMC
lists: LAMARC
lists: libRoadRunner
lists: LoFreq
lists: MetaPhlAn
lists: MicrobiomeUtilities
lists: MINIMAC
lists: MIPE
lists: mothur
lists: Mugsy
lists: GNU Octave
lists: Oncofuse
lists: PBSIM
lists: PerlPrimer
lists: PHAST
lists: Picard
lists: PLINK
lists: ADEGENET
lists: phytools
lists: PSCBS
lists: R/QTL
lists: SAM
lists: vegan
lists: RepeatMasker
lists: Scythe
lists: SEER
lists: Seq-Gen
lists: SMRT-Analysis
lists: Scalable Nucleotide Alignment Program
lists: SPAdes
lists: TraceTuner
lists: Transterm
lists: TreeView
lists: Viewmol
lists: Vascular Modeling Toolkit
lists: Aegean
lists: amide
lists: Anndata
lists: ANTS - Advanced Normalization ToolS
lists: ARB project
lists: ArtificialFastqGenerator
lists: Arvados
lists: Bandage
lists: Berkeley Advanced Reconstruction Toolbox
lists: BBmap
lists: Eagle
lists: Bio-Formats
lists: BioImage Suite
lists: BioJava Project
lists: BioSig: An Imaging Bioinformatics System for Phenotypic Analysis
lists: BRAKER
lists: Bustools
lists: Computerized Anatomical Reconstruction and Editing Toolkit
lists: CellProfiler Image Analysis Software
lists: ChIPSeq Peak Finder
lists: ChromHMM
lists: Cluster
lists: Cytoscape
lists: Dazzler
lists: DCMTK: DICOM Toolkit
lists: DeepNano
lists: dinifti
lists: DICOMscope
lists: Dipy
lists: Drop-seq tools
lists: Electronic Cell Project
lists: Ecopcr
lists: Edtsurf
lists: DOMAINATRIX
lists: DOMALIGN
lists: Embassy-domsearch
lists: E-mem
lists: e-PCR
lists: Falcon
lists: Fastaq
lists: Fastqtl
lists: Ffindex
lists: FreeSurfer
lists: FSA
lists: FSL
lists: Galaxy
lists: GARLI
lists: Garlic
lists: IndelGenotyper
lists: gdpc
lists: Gemma
lists: GenomeTools
lists: Gentle
lists: GERP
lists: Gff2aplot
lists: gffread
lists: GraPhlAn
lists: Gubbins
lists: Harvest-tools
lists: HiLive
lists: Hinge
lists: ImageMagick
lists: ImageVis3D
lists: Indelible
lists: InVesalius 3
lists: IQ TREE
lists: ITK-SNAP
lists: JBrowse
lists: JIST: Java Image Science Toolkit
lists: Fastahack
lists: Lipsia
lists: LUMPY
lists: Mash
lists: Mesquite
lists: MetaBAT
lists: MOSAIK
lists: MRtrix
lists: Human Disease Ontology
lists: NanoFilt
lists: Object-Oriented Development Interface for NMR
lists: OpenElectrophy
lists: OpenMEEG
lists: OpenWalnut
lists: OptiType
lists: PARASAIL
lists: ParaView
lists: PhyloPhlAn
lists: Phyutility
lists: Porechop
lists: PSIPRED
lists: PsychoPy
lists: Pychopper
lists: pydicom
lists: PySurfer
lists: MNE software
lists: pbcore
lists: pyxnat
lists: QIIME2
lists: RAxML Next Generation
lists: ShortRead
lists: Phangorn
lists: psych
lists: VennDiagram
lists: Recognition of Errors in Assemblies using Paired Reads
lists: RELION
lists: RStudio
lists: Salmon
lists: Scoary
lists: University of Zurich SCRM - Cell-and Tissue Biobank
lists: Short Read Sequence Typing for Bacterial Pathogens
lists: Umap
lists: VoxBo
lists: WTDBG
lists: XNAT - The Extensible Neuroimaging Archive Toolkit
lists: ABACAS
lists: AceDB
lists: LINKAGE
lists: Protein Information Resource
lists: PredictNLS
lists: tRNAscan-SE
lists: RSEM
lists: Aeskulap
lists: alleleCount
lists: assembly-stats
lists: Atropos
lists: Assemblytics
lists: Augur
lists: AxParafit
lists: Aghermann
lists: bambamc
lists: AxPcoords
lists: bamkit
lists: BAli-Phy
lists: Auspice
lists: BBHash
lists: BCALM 2
lists: Bibus
lists: BioMAJ
lists: BioCocoa
lists: Biber
lists: BioImageXD
lists: caftools
lists: BOLT-LMM
lists: CamiTK
lists: CLI for BioMAJ
lists: CAMP
lists: CAT and BAT
lists: CHIME
lists: CDK
lists: ChromImpute
lists: CiftiLib
lists: conda-package-handling
lists: CARD
lists: CONTRAfold
lists: CodonW
lists: Change-O
lists: C Thread Pool
lists: Chemtool
lists: covtobed
lists: CTK
lists: CTDopts
lists: CTDConverter
lists: Conquest DICOM
lists: CTSim
lists: Dicom3tools
lists: Dendroscope3
lists: cyvcf2
lists: Deepbinner
lists: EDFlib
lists: EDFbrowser
lists: dicompyler
lists: EMMAX
lists: DEXTRACTOR
lists: DNApi
lists: Epigrass
lists: ELPH
lists: ExaBayes
lists: EMPeror
lists: FreeImage
lists: Fast5 Library
lists: Entangle
lists: FFP
lists: GenomeTester4
lists: Filtlong
lists: EMBOSS explorer
lists: GfaPy
lists: GATB
lists: GCLib
lists: EpiFire
lists: HTSJDK
lists: GDCM
lists: GNUmed
lists: GraphMap2
lists: foreign
lists: Ginkgo CADx
lists: GramAlign
lists: IDeFIX
lists: ImageTooth
lists: Htscodecs
lists: IGoR
lists: iVar
lists: InsPecT
lists: Intake
lists: IgDiscover
lists: JAligner
lists: ISMRMRD
lists: JabRef
lists: Lambda
lists: Kaptive
lists: KBibTeX
lists: InSilicoSeq
lists: kineticsTools
lists: AcePerl
lists: KmerResistance
lists: Bio-EUtilities
lists: Insight Toolkit
lists: Kleborate
lists: KMA
lists: kempbasu
lists: Bio-ASN1-EntrezGene
lists: IVA
lists: Bio-Coordinate
lists: Bio-Graphics
lists: AI-FANN
lists: Bio-Chado-Schema
lists: BioD
lists: Bio-Tools-Run-Alignment-Clustalw
lists: Bio-PrimerDesigner
lists: Bioparser
lists: Edlib
lists: Bio-SamTools
lists: libdisorder
lists: libncl
lists: Bio-Tools-Run-Alignment-TCoffee
lists: Chado
lists: Bio-Tools-Phylo-PAML
lists: libGDF
lists: JLODA
lists: libdivsufsort
lists: libminc
lists: Bio-SCF
lists: Sort-Key-Top
lists: Java NeXML libraries and tools
lists: libmaus2
lists: libqes
lists: MIA
lists: libics
lists: FAST Analysis of Sequences Toolbox
lists: Libchipcard
lists: TaxonomyTree
lists: Core Wrapper
lists: Lighter
lists: SSW Library
lists: libqc++
lists: SeqLib
lists: tabixpp
lists: libStatGen
lists: ThreadPool
lists: Lucy
lists: MafFilter
lists: Metastudent
lists: Libxdf
lists: limereg
lists: Mapsembler2
lists: MAXFLOW
lists: metaBIT
lists: MacSyFinder
lists: VIGRA
lists: MCL
lists: MHAP
lists: MindTheGap
lists: Logol
lists: medicalterms
lists: mmtf-python
lists: Miniasm
lists: Tab2MAGE
lists: MView
lists: LTRsift
lists: Molekel
lists: mirtop
lists: Maude
lists: MicrobeGPS
lists: mPSQed
lists: mPTP
lists: SMILE
lists: Entrez Direct
lists: NW-align
lists: NanoSV
lists: Mustang
lists: Nanocall
lists: Ngila
lists: MRtrix3
lists: NORSp
lists: Murasaki
lists: Nextflow
lists: NCBI accession download script
lists: omegaMap
lists: NJplot
lists: NanoLyse
lists: OpenCFU
lists: NORSnet
lists: OBITools
lists: NeoBio
lists: OptimiR
lists: PartitionFinder
lists: OpenSurgSim
lists: NanoPlot
lists: NextSV
lists: OpenEMR
lists: Orthanc
lists: PAIPline
lists: Odil
lists: PHYLOViZ
lists: PlasmidSeeker
lists: PDB2PQR
lists: OpenIGTLink
lists: Parsnp
lists: parallel-fastq-dump
lists: ParsInsert
lists: PiGx-RNAseq
lists: PfTools
lists: PlasmidID
lists: Phyx
lists: pipasic
lists: pngquant
lists: pbcopper
lists: Patristic
lists: PLIP
lists: Placnet
lists: PhySamp
lists: pufferfish
lists: PRINSEQ
lists: PLAST
lists: PCMA
lists: picopore
lists: POA
lists: PROFisis
lists: ProDA
lists: PRANK
lists: Cooler
lists: pyepl
lists: pssh2
lists: Plastimatch
lists: pynast
lists: psignifit
lists: python-airr
lists: Populations
lists: pyFAI
lists: python-biom-format
lists: pyranges
lists: purple
lists: PyCogent
lists: qtlreaper
lists: qcumber
lists: python-bx
lists: pyomo
lists: pycoqc
lists: Proteinortho
lists: DendroPy
lists: qtltools
lists: pyscanfcs
lists: rambo-k
lists: qcat
lists: rasmol
lists: rampler
lists: raccoon
lists: ragout
lists: rapmap
lists: quicktree
lists: Raster3D
lists: AnnotationHub
lists: Rate4Site
lists: altcdfenvs
lists: annotate
lists: biomformat
lists: Biobase
lists: affyio
lists: bridgedbr
lists: BiocGenerics
lists: biovizBase
lists: genefilter
lists: CNEr
lists: bsgenome
lists: geneplotter
lists: ctc
lists: genomicalignments
lists: go.db
lists: genomeinfodb
lists: hypergraph
lists: gviz
lists: groHMM
lists: mergeomics
lists: impute
lists: makecdfenv
lists: multiassayexperiment
lists: qusage
lists: mutationalpatterns
lists: metagenomeseq
lists: preprocesscore
lists: pwmenrich
lists: rbgl
lists: htsfilter
lists: nanostringqcpro
lists: rgsepd
lists: rcpi
lists: pcaMethods
lists: adephylo
lists: rsamtools
lists: savr
lists: tfbstools
lists: xvector
lists: ade4
lists: biwt
lists: beeswarm
lists: cmprsk
lists: alakazam
lists: bio3d
lists: Epi
lists: BoolNet
lists: DT
lists: DoseFinding
lists: itertools
lists: fitdistrplus
lists: fitbitscraper
lists: dynamicTreeCut
lists: epibasix
lists: distory
lists: forecast
lists: incidence
lists: hms
lists: nmf
lists: mediana
lists: genetics
lists: lexrankr
lists: psychometric
lists: optimalcutpoints
lists: proc
lists: pcapp
lists: parmigene
lists: rann
lists: phylobase
lists: psyphy
lists: psychotree
lists: rnexml
lists: rook
lists: rpact
lists: tigger
lists: robustrankaggreg
lists: qqman
lists: rwave
lists: shazam
lists: rsvd
lists: rncl
lists: rotl
lists: rniftilib
lists: sjplot
lists: wavethresh
lists: stringi
lists: snowfall
lists: waveslim
lists: surveillance
lists: tsne
lists: webgestaltr
lists: resfinder
lists: readucks
lists: recan
lists: roadtrips
lists: readseq
lists: roguenarok
lists: rtax
lists: rgfa
lists: ruby-bio
lists: runcircos-gui
lists: sailfish
lists: samclip
lists: saint
lists: sambamba
lists: seqmagick
lists: sbmltoolbox
lists: seq-seq-pan
lists: seqsero
lists: seqwish
lists: shapeit4
lists: sepp
lists: crb-blast
lists: sigma-align
lists: sibsim4
lists: signalalign
lists: sibelia
lists: shiny-server
lists: sistr
lists: skesa
lists: sigviewer
lists: snpomatic
lists: spaced
lists: sitplus
lists: sofa-apps
lists: sra-toolkit
lists: strap-base
lists: sparta
lists: swarm
lists: sourmash
lists: surankco
lists: streamlit
lists: tab2mage
lists: sumaclust
lists: sweed
lists: tacg
lists: zAlign
lists: tiddit
lists: Workrave
lists: sprai
lists: VolPack
lists: XMedCon
lists: Yanosim
lists: Yanagiba
lists: libswiss-perl
lists: yaha
lists: VisIt
lists: VelvetOptimiser
lists: variation graph
lists: vcfanno
lists: VarMatch
lists: VirulenceFinder
lists: CCS
lists: VADR
lists: VARNA
lists: VMD
lists: FISH
lists: trace2dbEST
lists: TREE-PUZZLE
lists: umis
lists: Trinculo
lists: toil
lists: TRANSIT
lists: toppred
lists: Unicycler
lists: TM-align
lists: Tn-seq explorer
lists: Tombo
lists: TopHat-Recondition
is related to: FreeContact
is parent organization of: neurodebian
|
|
|
|
Free, Freely available |
|
nlx_151598 |
|
|
|
SCR_006638 |
Debian - The universal operating system, Debian GNU/Linux |
2026-08-02 09:04:43 |
50 |
