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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Consensus CDS Resource Report Resource Website 100+ mentions |
Consensus CDS (RRID:SCR_006729) | CCDS | database, data or information resource | Database (anonymous FTP) resulting from a collaborative effort to identify a core set of human and mouse protein coding regions that are consistently annotated and of high quality. The long term goal is to support convergence towards a standard set of gene annotations. Collaborators are EBI, NCBI, UCSC, WTSI and the initial results are also available from the participants'''' genome browser Web sites. In addition, CCDS identifiers are indicated on the relevant NCBI RefSeq and Entrez Gene records and in Map Viewer displays of RNA (RefSeq) and Gene annotations on the reference assembly. | human genome sequence, human protein, mouse genome sequence, mouse protein, protein coding region, gene, genome sequence, genome, sequence, gene annotation, protein, gold standard |
is listed by: OMICtools is related to: Entrez Gene is related to: HomoloGene is related to: MapViewer is related to: VEGA has parent organization: NCBI has parent organization: European Bioinformatics Institute has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom has parent organization: University of California at Santa Cruz; California; USA |
PMID:24217909 PMID:22434842 PMID:19498102 |
The community can contribute to this resource, Acknowledgement requested | nif-0000-02645, OMICS_01535 | http://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi | SCR_006729 | CCDS Database, NCBI Consensus CDS protein set, NCBI CCDS Database | 2026-08-06 09:26:39 | 230 | |||||
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NCBI Resource Report Resource Website 10000+ mentions |
NCBI (RRID:SCR_006472) | NCBI | nonprofit organization | A portal to biomedical and genomic information. NCBI creates public databases, conducts research in computational biology, develops software tools for analyzing genome data, and disseminates biomedical information for the better understanding of molecular processes affecting human health and disease. | biomedical, genomic, molecular biology, health, disease, database, computational biology, bio.tools |
is used by: NIF Data Federation is listed by: NIDDK Information Network (dkNET) is listed by: bio.tools is listed by: Debian is related to: AmiGO is related to: NCBI Viral Genomes is related to: Clone DB is related to: PubReader is related to: OMIA - Online Mendelian Inheritance in Animals is related to: European Nucleotide Archive (ENA) is related to: Plant Co-expression Annotation Resource is related to: METAGENOTE is related to: Phyutility is related to: CaspBase is related to: Prokaryotic Genomes Automatic Annotation Pipeline has parent organization: National Library of Medicine is parent organization of: MedGen is parent organization of: dbSTS is parent organization of: PubMed Health is parent organization of: BLASTP is parent organization of: GQuery is parent organization of: BLASTN is parent organization of: GTEx eQTL Browser is parent organization of: BLASTX is parent organization of: Homology Maps Page is parent organization of: PEDHUNTER is parent organization of: Conserved Domain Database is parent organization of: NCBI Genome Survey Sequences Database is parent organization of: High Throughput Genomic Sequences Division is parent organization of: AceView is parent organization of: dbMHC is parent organization of: dbSNP is parent organization of: Entrez Gene is parent organization of: NCBI Genome is parent organization of: NCBI database of Genotypes and Phenotypes (dbGap) is parent organization of: GenBank is parent organization of: International HapMap Project is parent organization of: IgBLAST is parent organization of: Lowes Syndrome Mutation Database is parent organization of: HomoloGene is parent organization of: Influenza Virus Resource is parent organization of: Distant Regulatory Elements is parent organization of: e-PCR is parent organization of: MapViewer is parent organization of: Primer-BLAST is parent organization of: dbVar is parent organization of: NCBI Taxonomy is parent organization of: NCBI Protein Database is parent organization of: Gene Reference into Function is parent organization of: Protein Clusters is parent organization of: RefSeq is parent organization of: TPA is parent organization of: GENSAT at NCBI - Gene Expression Nervous System Atlas is parent organization of: COBALT: Constraint-based Multiple Alignment Tool is parent organization of: PubMed Central is parent organization of: UniLib is parent organization of: NCBI Structure is parent organization of: PubChem is parent organization of: Anopheles gambiae (African malaria mosquito) genome view is parent organization of: UniGene is parent organization of: NLM Catalog is parent organization of: Entrez GEO Profiles is parent organization of: Nucleotide database is parent organization of: NCBI BioSystems Database is parent organization of: CBLAST is parent organization of: NCBI BioProject is parent organization of: NCBI Probe is parent organization of: PubMed is parent organization of: NCBI BioSample is parent organization of: NCBI Nucleotide is parent organization of: NCBI Structure: Cn3D is parent organization of: NCBI BLAST is parent organization of: IBIS: Inferred Biomolecular Interactions Server is parent organization of: NCBI Sequence Read Archive (SRA) is parent organization of: Gene Expression Omnibus (GEO) is parent organization of: NCBI Popset is parent organization of: PIE the search is parent organization of: Genetic Testing Registry is parent organization of: NCBI Resource List is parent organization of: NCBI dbRBC is parent organization of: NCBI YouTube Channel is parent organization of: NCBI Epigenomics is parent organization of: ClinVar is parent organization of: Genome Reference Consortium is parent organization of: GeneReviews is parent organization of: Molecular Imaging and Contrast Agent Database is parent organization of: Consensus CDS is parent organization of: UniSTS is parent organization of: HIV-1 Human Protein Interaction Database is parent organization of: Assay Guidance Manual is parent organization of: Bookshelf is parent organization of: COG is parent organization of: Gene Expression Omnibus is parent organization of: Molecular Modelling DataBase is parent organization of: Organelle Genome Resources is parent organization of: SKY/M-FISH/CGH is parent organization of: dbEST is parent organization of: JournalReview.org is parent organization of: NCBI GenBank via FTP is parent organization of: PubChem Compound is parent organization of: Molecular Modeling DataBase is parent organization of: Vector Alignment Search Tool is parent organization of: PubChem BioAssay is parent organization of: NCBI Genome Workbench is parent organization of: TBLASTN is parent organization of: TBLASTX is parent organization of: Mega BLAST is parent organization of: Genetic Codes is parent organization of: HIV-1, Human Protein Interaction Database is parent organization of: PubReader is parent organization of: PubChem Substance is parent organization of: OMIA - Online Mendelian Inheritance in Animals is parent organization of: OMIM is parent organization of: 1000 Genomes: A Deep Catalog of Human Genetic Variation is parent organization of: GeneTests is parent organization of: NCBI Genome Survey Sequences Database is parent organization of: MagicBlast is parent organization of: RefSeq is parent organization of: Sequin is parent organization of: Batch Entrez is parent organization of: Entrez is parent organization of: tbl2asn is parent organization of: Whole Genome Shotgun (WGS) Project is parent organization of: Digital Differential Display (DDD) is parent organization of: BLASTClust is parent organization of: PASC is parent organization of: Open Reading Frame Finder is parent organization of: Genotyping works with: Human Mouse Disease Connection works with: A plasmid Editor works with: Database of genes related to Repeat Expansion Diseases |
Public, The community can contribute to this resource | nif-0000-00139, biotools:ncbi_resources | https://bio.tools/ncbi_resources | http://www.ncbi.nih.gov/ | SCR_006472 | National Center for Biotechnology Information, NCBI - National Center for Biotechnology Information | 2026-08-01 12:03:10 | 25993 | |||||
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European Bioinformatics Institute Resource Report Resource Website 1000+ mentions |
European Bioinformatics Institute (RRID:SCR_004727) | EMBL-EBI | institution | Non-profit academic organization for research and services in bioinformatics. Provides freely available data from life science experiments, performs basic research in computational biology, and offers user training programme, manages databases of biological data including nucleic acid, protein sequences, and macromolecular structures. Part of EMBL. | organization, academic, bioinformatics, research, service, data, computational, biology, training, database, DNA, protein |
is used by: Blueprint Epigenome is listed by: re3data.org is related to: AgedBrainSYSBIO is related to: ProteomeXchange is related to: Open PHACTS is related to: RHEA is related to: TraCeR is related to: 3D-Beacons is related to: RNAcentral has parent organization: European Molecular Biology Laboratory is parent organization of: CoGenT++ is parent organization of: ENA Sequence Version Archive is parent organization of: Reaper - Demultiplexing trimming and filtering sequencing data is parent organization of: PeakAnalyzer is parent organization of: Tally is parent organization of: Clustal Omega is parent organization of: Biocatalogue - The Life Science Web Services Registry is parent organization of: Experimental Network for Functional Integration: A European Network of Excellence for Data Integration and Systems Biology is parent organization of: The Alternatve Splicing Database is parent organization of: BioModels is parent organization of: CHEBI is parent organization of: MAGE is parent organization of: Ensembl is parent organization of: MIAME is parent organization of: UniProt is parent organization of: Ligand-Gated Ion Channel Database is parent organization of: EBI Genomes is parent organization of: IMEx - The International Molecular Exchange Consortium is parent organization of: Toolbox at the European Bioinformatics Institute is parent organization of: Clustal W2 is parent organization of: ArrayExpress is parent organization of: IMGT/HLA is parent organization of: IntEnz- Integrated relational Enzyme database is parent organization of: IPD - Immuno Polymorphism Database is parent organization of: IPI is parent organization of: MicroArray and Gene Expression Markup Language is parent organization of: DaliLite Pairwise comparison of protein structures is parent organization of: Chemical Information Ontology is parent organization of: PANDIT : Protein and Associated Nucleotide Domains with Inferred Trees is parent organization of: Proteomics Identifications (PRIDE) is parent organization of: Software Ontology is parent organization of: FSSP - Families of Structurally Similar Proteins is parent organization of: Experimental Factor Ontology is parent organization of: Identifiers.org is parent organization of: HipSci is parent organization of: ProteomeXchange is parent organization of: Taxonomy is parent organization of: PDBe - Protein Data Bank in Europe is parent organization of: EBI Dbfetch is parent organization of: ProFunc is parent organization of: WSDbfetch (SOAP) is parent organization of: QuickGO is parent organization of: SAS - Sequence Annotated by Structure is parent organization of: UniProt DAS is parent organization of: UniParc at the EBI is parent organization of: Patent Abstracts is parent organization of: BioSample Database at EBI is parent organization of: Database of Genomic Variants Archive (DGVa) is parent organization of: European Genome phenome Archive is parent organization of: UniSave is parent organization of: ArchSchema is parent organization of: UniRef at the EBI is parent organization of: EBIMed is parent organization of: Kraken is parent organization of: SIMBioMS is parent organization of: Expression Profiler is parent organization of: Whatizit is parent organization of: InterProScan is parent organization of: VectorBase is parent organization of: DRCAT Resource Catalogue is parent organization of: FunTree is parent organization of: CREATE is parent organization of: BioMedBridges is parent organization of: PSICQUIC Registry is parent organization of: PDBsum is parent organization of: European Nucleotide Archive (ENA) is parent organization of: DrugPort is parent organization of: Ontology Lookup Service is parent organization of: EDAM Ontology is parent organization of: InterPro is parent organization of: MIRIAM Resources is parent organization of: EB-eye Search is parent organization of: SBO is parent organization of: Ensembl Genomes is parent organization of: NeuronVisio is parent organization of: IntAct is parent organization of: WSsas - Web Service for the SAS tool is parent organization of: Enzyme Structures Database is parent organization of: EMBOSS CpGPlot/CpGReport/Isochore is parent organization of: PaperMaker is parent organization of: CluSTr is parent organization of: Genome Reviews is parent organization of: GOA is parent organization of: Integr8 : Access to complete genomes and proteomes is parent organization of: IPD-ESTDAB- The European Searchable Tumour Line Database is parent organization of: IPD-HPA - Human Platelet Antigens is parent organization of: IPD-KIR - Killer-cell Immunoglobulin-like Receptors is parent organization of: IPD-MHC- Major Histocompatibility Complex is parent organization of: HilbertVis is parent organization of: Gene Expression Atlas is parent organization of: Parasite genome databases and genome research resources is parent organization of: Alternative Exon Database is parent organization of: AltExtron Database is parent organization of: Patent Data Resources is parent organization of: Pompep is parent organization of: Mouse finder is parent organization of: Gene Regulation Ontology is parent organization of: CiteXplore literature searching is parent organization of: MaxSprout is parent organization of: SRS is parent organization of: MicroCosm Targets is parent organization of: Kalign is parent organization of: MUSCLE is parent organization of: FASTA is parent organization of: WU-BLAST is parent organization of: Oases is parent organization of: HTS Mappers is parent organization of: CRAM is parent organization of: CSA - Catalytic Site Atlas is parent organization of: ArrayExpress (R) is parent organization of: WiggleTools is parent organization of: vsn is parent organization of: rlsim is parent organization of: ISA Infrastructure for Managing Experimental Metadata is parent organization of: BioMart Project is parent organization of: BioPerl is parent organization of: BioJS is parent organization of: EMDataResource.org is parent organization of: HTqPCR is parent organization of: Reactome is parent organization of: Europe PubMed Central is parent organization of: h5vc is parent organization of: LexGrid is parent organization of: Consensus CDS is parent organization of: 1000 Genomes: A Deep Catalog of Human Genetic Variation is parent organization of: OrChem is parent organization of: Orphanet Rare Disease Ontology is parent organization of: Reflect is parent organization of: BioLayout Express 3D is parent organization of: Virtual Fly Brain is parent organization of: GeneWise is parent organization of: PhenoMeNal is parent organization of: Ensembl Metazoa is parent organization of: Velvet |
EMBL member states ; European Union ; NIH ; Wellcome Trust ; UK Research Councils ; Industry Programme partners ; BBSRC |
grid.225360.0, Wikidata: Q1341845, ISNI: 0000 0000 9709 7726, nlx_72386 | https://ror.org/02catss52 | SCR_004727 | EBI, European Molecular Biology Laboratory - European Bioinformatics Institute | 2026-08-01 12:02:44 | 3696 | ||||||
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University of California at Santa Cruz; California; USA Resource Report Resource Website 10+ mentions |
University of California at Santa Cruz; California; USA (RRID:SCR_011624) | UCSC | university | Public research university in Santa Cruz, California. It is one of 10 campuses in the University of California system. |
is related to: Structure Harvester has parent organization: University of California; California; USA is parent organization of: BISC is parent organization of: Spliceosome Database is parent organization of: Cancer Genomics Hub is parent organization of: In-Silico PCR is parent organization of: VisiGene Image Browser is parent organization of: NanoStriDE is parent organization of: UCSC Genome Browser is parent organization of: ENCODE is parent organization of: GtRNAdb - Genomic tRNA Database is parent organization of: Yeast Intron Database is parent organization of: BigWig and BigBed is parent organization of: The Intronerator is parent organization of: EyeBrowse is parent organization of: tRNAscan-SE is parent organization of: tRNAscan-SE is parent organization of: UCSC Cancer Genomics Browser is parent organization of: BLAT is parent organization of: University of California Santa Cruz Labs and Facilities is parent organization of: Pecan is parent organization of: Consensus CDS is parent organization of: GenomeSpace is parent organization of: Encode is parent organization of: liftOver is parent organization of: XRNA is parent organization of: UCSC Xena is parent organization of: University of California, Santa Cruz Chemical Screening Center Core Facility is parent organization of: University of California at Santa Cruz Life Sciences Microscopy Center Core Facility is parent organization of: University of California, Santa Cruz IBSC Flow Cytometry Core Facility is parent organization of: University of California Santa Cruz Macromolecular Structure Function Core Facility is parent organization of: University of California at Santa Cruz Institute for Biology of Stem Cells Cell Culture Core Facility is parent organization of: University of California Santa Cruz Banana Slug Genomics Center Core Facility is parent organization of: University of California at Santa Cruz Biomolecular Cryo Electron Microscopy Core Facility is parent organization of: University of California at Santa Cruz Plasma Analytical Laboratory Core Facility is parent organization of: University of California at Santa Cruz Marine Analytical Laboratory Core Facility is parent organization of: University of California at Santa Cruz Stable Isotope Laboratory Core Facility is parent organization of: UCSC Cell Browser is parent organization of: miRCode is parent organization of: tRNA Analysis of eXpression |
nlx_63906, Wikidata:Q1047293, Crossref funder ID:100006358, grid.205975.c, ISNI:0000 0001 0740 6917 | https://ror.org/03s65by71 | SCR_011624 | UCSC | 2026-08-01 12:04:28 | 29 | ||||||||
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VEGA Resource Report Resource Website 500+ mentions |
VEGA (RRID:SCR_007907) | VEGA | service resource, production service resource, data analysis service, data or information resource, analysis service resource, database | Central repository for high quality frequently updated manual annotation of vertebrate finished genome sequence. Human, mouse and zebrafish are in the process of being completely annotated, whereas for other species the annotation is only of specific genomic regions of particular biological interest. The majority of the annotation is from the HAVANA group at the Welcome Trust Sanger Institute. Users can BLAST, search for specific text, export, and download data. Genomes and details of the projects for each species are available through the homepages for human mouse and zebrafish. The website is built upon code from the EnsEMBL (http://www.ensembl.org) project. Some Ensembl features are not available in Vega. From the users point of view perhaps the most significant of these is MartView. However due to their inclusion in Ensembl, Vega human and mouse data can be queried using Ensembl MartView. Vega contains annotation of the human MHC region in eight haplotypes, and the LRC region in three haplotypes. Vega also contains annotation on the Insulin Dependent Diabetes (IDD) regions on non-reference assemblies for mouse. | human, mouse, zebrafish, gorilla, wallaby, pig, dog, vertebrate, genome, orfs, FASEB list |
is listed by: Sequencing of Idd regions in the NOD mouse genome is related to: Consensus CDS has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
PMID:18003653 PMID:15975227 PMID:15608237 |
r3d100012575 | https://doi.org/10.17616/R3W77X | SCR_007907 | The Vertebrate Genome Annotation database (VEGA), Vertebrate Genome Annotation, Vertebrate Genome Annotation Database | 2026-08-06 09:27:01 | 753 | ||||||
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Wellcome Trust Sanger Institute; Hinxton; United Kingdom Resource Report Resource Website 500+ mentions |
Wellcome Trust Sanger Institute; Hinxton; United Kingdom (RRID:SCR_011784) | WTSI, Sanger | institution | Non profit research organization for genome sequences to advance understanding of biology of humans and pathogens in order to improve human health globally. Provides data which can be translated for diagnostics, treatments or therapies including over 100 finished genomes, which can be downloaded. Data are publicly available on limited basis, and provided more extensively upon request. | research, genome, sequence, human, health, project, global, data, treatment, therapy |
is listed by: re3data.org is affiliated with: Open Targets is related to: Clonalframe is related to: ClonalOrigin is related to: TraCeR is parent organization of: ILLUMINUS is parent organization of: ARNIE is parent organization of: Sequence Search and Alignment by Hashing Algorithm is parent organization of: Sequencing of Idd regions in the NOD mouse genome is parent organization of: CAROL is parent organization of: DINDEL is parent organization of: Wellcome Trust Case Control Consortium is parent organization of: OLORIN is parent organization of: Exomiser is parent organization of: COSMIC - Catalogue Of Somatic Mutations In Cancer is parent organization of: GeneDB is parent organization of: Breast Cancer Somatic Genetics Study is parent organization of: Artemis: Genome Browser and Annotation Tool is parent organization of: ACT: Artemis Comparison Tool is parent organization of: Alien hunter is parent organization of: Pfam is parent organization of: DNAPlotter is parent organization of: VAGrENT is parent organization of: SMALT is parent organization of: LookSeq is parent organization of: ZMP is parent organization of: Deciphering Developmental Disorders is parent organization of: Sanger Mouse Resources Portal is parent organization of: SpliceDB is parent organization of: DECIPHER is parent organization of: 1000 Genomes: A Deep Catalog of Human Genetic Variation is parent organization of: Genes to Cognition: Neuroscience Research Programme is parent organization of: MEROPS is parent organization of: Rfam is parent organization of: VEGA is parent organization of: Bacterial Genomes is parent organization of: Caenorhabditis Genome Sequencing Projects is parent organization of: D. rerio Blast Server is parent organization of: Fungi Sequencing Projects is parent organization of: PEER is parent organization of: Alfresco - FRont-End for Sequence COmparison is parent organization of: AutoCSA (Automatic Comparative Sequence Analysis) is parent organization of: AceDB is parent organization of: CnD is parent organization of: Genomics of Drug Sensitivity in Cancer is parent organization of: Zebrafish Genome Project is parent organization of: Tree families database is parent organization of: Ensembl is parent organization of: BamView is parent organization of: SVMerge is parent organization of: RetroSeq is parent organization of: Consensus CDS is parent organization of: WormBase is parent organization of: Belvu is parent organization of: Bio-tradis is parent organization of: Blixem is parent organization of: Dotter is parent organization of: Exonerate is parent organization of: Fastaq is parent organization of: Gubbins is parent organization of: CellPhoneDB is parent organization of: Ensembl Metazoa is parent organization of: Scmap is parent organization of: Scfind is parent organization of: Recognition of Errors in Assemblies using Paired Reads is parent organization of: SAMTOOLS is parent organization of: Cell Model Passports |
Wellcome Trust | ISNI: 0000 0004 0606 5382, nlx_91258, grid.10306.34, Wikidata: Q1142544 | https://ror.org/05cy4wa09 | SCR_011784 | Wellcome Trust Sanger Institute, Genome Research Limited, The Wellcome Sanger Institute, Sanger Institute, Wellcome Trust Sanger Institute Genome Research Limited | 2026-08-01 12:04:18 | 527 | ||||||
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OMICtools Resource Report Resource Website 10+ mentions |
OMICtools (RRID:SCR_002250) | OMICtools | database, catalog, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented Jul 19, 2024. Metadatabase manually curated that provides web accessible tools related to genomics, transcriptomics, proteomics and metabolomics. Used as informative directory for multi-omic data analysis. | metadatabase, manually, curated, tool, genomic, transcriptomic, proteomic, metabolomic, data |
lists: ncdfFlow lists: BSmooth-align lists: 4Peaks lists: CSDeconv lists: Tablet lists: GenomicRanges lists: SNPSVM lists: ReadqPCR lists: SP-Designer lists: CorMut lists: ChIPmeta lists: FACS lists: metaSeq lists: Dissect lists: Fusion Analyser lists: FusionCatcher lists: GASV lists: GHOSTM lists: nFuse lists: PD5 lists: Patchwork lists: QuadGT lists: VariantAnnotation lists: ReQON lists: SnowsShoes-FTD lists: timecourse lists: SOAPfuse lists: SOAPfusion lists: pFind Studio: pLink lists: Spotfinder lists: AbMining ToolBox lists: SNAVI lists: MetAssign lists: JChemPaint lists: siRNArules lists: AutoPrime lists: RmiR.Hs.miRNA lists: MysiRNA-designer lists: TACOA lists: Treephyler lists: MedGen lists: D-Tailor lists: BioLemmatizer lists: AffyRNADegradation lists: Orphelia lists: ArrayExpress (R) lists: Parallel-META lists: CovalentDock Cloud lists: DOCK lists: exomeSuite lists: SPAdes lists: Sequence Read Format lists: FastQ Screen lists: GEOquery lists: Bovine Genome Database lists: GISTIC lists: DESeq lists: Postgwas lists: BLASTPLOT lists: miRanalyzer lists: Magnolya lists: GMATo lists: GemSIM lists: Grinder lists: Illuminate lists: RNAcontext lists: MIMOSA lists: F2DockClient lists: FlexX lists: Glide lists: GOLD lists: Molegro Virtual Docker lists: Sanjeevini lists: SODOCK lists: HEM lists: Surflex-Dock lists: Cascleave lists: MetaDE lists: Cell Death Proteomics Database lists: GPS-Calpain Cleavage Detector lists: GraBCas lists: c3net lists: Context Likelihood of Relatedness lists: GENIE3 lists: Inferelator lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks lists: MRNet lists: UnSplicer lists: Duplicate reads removal lists: PEpiD lists: TAPIR: target prediction for plant microRNAs lists: iOMICS lists: Megraft lists: VARiD lists: Cistrome lists: PSGInfer lists: MochiView lists: RSEM lists: RNAmotifs lists: M(at)CBETH lists: MS-Spectre lists: Quant lists: RNASeqReadSimulator lists: iFad lists: GramCluster lists: GProX lists: PeptideProphet lists: CNTools lists: Lasergene's SeqMan Pro lists: ProteinProphet lists: OMSSAPercolator lists: Flicker lists: cn.FARMS lists: LIPAGE lists: DNASTAR: Lasergene Core Suite lists: Clonality lists: oneClickCGH lists: CGH Fusion lists: Screensaver lists: fqzcomp lists: ArrayPlex lists: MiRdup lists: MeQA lists: Methyl-Analyzer lists: Annotare lists: CpGassoc lists: Koadarray lists: RADtools lists: rtd lists: ABrowse lists: GPViz lists: cuteNMR lists: Jnomics lists: JMolDraw lists: CGAP-Align lists: ARACHNE lists: Kinannote lists: CLC Main Workbench lists: ParseCNV lists: TAPS lists: PyroHMMsnp lists: TransView lists: pvac lists: riboPicker lists: NucleoFinder lists: bzip2 lists: GENSENG lists: AS-Peak lists: is-rSNP lists: ILLUMINUS lists: QUALIFIER lists: FunctSNP lists: Micro-Analyzer lists: flowStats lists: flowPeaks lists: metaMA lists: rTANDEM lists: flowFlowJo lists: TargetCaller lists: PSCBS lists: iASeq lists: d2-tools lists: PEPPER lists: OLINgui lists: TNO-DECO lists: SigFuge lists: stsPlots lists: Sulfinator lists: Rdisop lists: pbcore lists: GeneExpressionSignature lists: sybil - Efficient Constrained Based Modelling in R lists: msbwt lists: MetaDrug lists: Reprever lists: POPBAM lists: SAMBLASTER lists: SpeedSeq lists: pyQPCR lists: RefFinder lists: PGS lists: miRprimer lists: iBMQ lists: NIMBL lists: TDARACNE lists: bamova lists: BAIT lists: ARNIE lists: fourSig lists: Mfuzz lists: MaryGold lists: TOPPAS lists: SPHINX lists: PhyloPythia lists: MATCHCLIP lists: mzMatch lists: Sequence Search and Alignment by Hashing Algorithm lists: ESPRIT lists: DySC lists: FPSAC lists: Scaffold builder lists: SNPiR lists: ACCUSA2 lists: MuTect lists: Pindel lists: rSeq lists: GERP lists: SiPhy lists: wANNOVAR lists: ViReMa lists: Smart Dictionary Lookup lists: VariantMaster lists: GeneWays lists: AdaptiveCrawler lists: NGS-Cleaner lists: flowQ lists: Database Enabled Code for Ideal Probe Hybridization Employing R lists: NGSmethPipe lists: Pyrocleaner lists: DecGPU lists: drFAST lists: MPscan lists: TAPyR lists: MutPred Splice lists: ContEst lists: Mini Analysis Guide for Microarrays lists: DDBJ Omics Archive lists: Chromas lists: OnEx - Ontology Evolution Explorer lists: BEBaC lists: FlipFlop lists: Phosphor Antibody Array Data Analysis lists: PhenoFam lists: forqs lists: GMcloser lists: GenomeWeb lists: Bycom lists: CorQ lists: NGS tools for the novice lists: Opera lists: SRMA lists: DeNovoGear lists: VarB lists: BAMseek lists: TriageTools lists: clipcrop lists: detecttd lists: FastUniq lists: GEUVADIS lists: TMAP lists: BISMA lists: FineSplice lists: RMAP lists: Sequencing Analysis Software lists: BLASR lists: GlycoWorkbench lists: jmzIdentML API lists: SciRoKo lists: HapCompass lists: JBrowse lists: DSRC lists: fastqz lists: GDC lists: GRS lists: PREFAB lists: BLASTP lists: Google Compute Engine lists: SplitSeek lists: ASC lists: NPEBseq lists: FUSIM lists: Geoffs Bio-Directories lists: Phred lists: MassGenomics lists: Illuminator lists: BAC lists: targetscan.Hs.eg.db lists: RmiR lists: MmPalateMiRNA lists: Starr lists: bsseq lists: Qvalue lists: ExomePeak lists: NextGenSeq(at)nature.com lists: AutoAssemblyD lists: CUDA-EC lists: rGADEM lists: qips lists: PICS lists: Jmosaics lists: SparseAssembler lists: BreakFusion lists: ParticleCall lists: DSGseq lists: R453Plus1Toolbox lists: SynView lists: ShortFuse lists: Cancer Gene Index lists: jmzML lists: CASVM lists: Birdseed lists: Reaper - Demultiplexing trimming and filtering sequencing data lists: GimmeMotifs lists: skewer lists: flowWorkspace lists: massiR lists: Transposon Insertion Finder lists: Shimmer lists: GenVision lists: DiMO lists: MetaPhyl lists: WiggleTools lists: EMI lists: SplicePlot lists: CrossMap lists: GraphIBD lists: rbsurv lists: Skylign lists: HMMvar lists: tbvar lists: STRViper lists: Breakway lists: Genometa lists: CATCHprofiles lists: VAAL lists: SLOPE lists: BreakSeq lists: Anchored Assembly lists: Bionimbus lists: ChIPMunk lists: RDPipeline lists: PeakAnalyzer lists: SomaticCall lists: Baa.pl lists: VirusHunter lists: seq2HLA lists: MUMmerGPU lists: GeneMeta lists: GenoMiner lists: GenoViewer lists: sim4cc lists: GenomicTools lists: Omixon Target HLA Typing lists: Omixon Target Data Analysis lists: PARalyzer lists: QualiMap lists: Lab7 lists: mlgt lists: BSSim lists: Golden Helix GenomeBrowse lists: HiPipe lists: MADAM lists: Microarray Data Analysis System lists: Automated Microarray Pipeline lists: MergeMaid lists: OmicsOffice for NGS SeqSolve lists: categoryCompare lists: metahdep lists: Plantagora lists: QUAST lists: TileQC lists: VectorFriends lists: vcflib lists: PHACCS lists: Sequedex lists: Genome Trax lists: VCFtools lists: NGSUtils lists: ChIP-seq lists: Tally lists: mapDamage lists: freeIbis lists: piCALL lists: ERGO lists: TALLYMER lists: KMC lists: DSK lists: Mutation Surveyor lists: BFCounter lists: snpStats: SnpMatrix and XSnpMatrix classes and methods lists: CNVtools lists: CGEN lists: RCASPAR lists: iterativeBMAsurv lists: multtest lists: globaltest lists: SABER lists: Local Ancestry in adMixed Populations lists: GemTools lists: MinimumDistance lists: ipPCA lists: ADMIXTURE lists: frappe lists: Mutascope lists: metabnorm lists: VegaMC lists: VanillaICE lists: SNPchip lists: SMAP lists: quantsmooth lists: mBPCR lists: ITALICS lists: GenoSet lists: exomeCopy lists: CGHregions lists: CGHbase lists: BlindCall lists: beadarraySNP lists: SSCprofiler lists: CGH-Explorer lists: GLAD lists: SNP and Variation Suite SNP Analysis lists: SNP and Variation Suite CNV Analysis lists: ProbRNA lists: methylMnM lists: methyAnalysis lists: les lists: ARRmNormalization lists: ChIPsim lists: Sherman lists: yaqcaffy lists: wateRmelon lists: sRAP lists: spotSegmentation lists: SNM lists: SNAGEE lists: Simpleaffy lists: qcmetrics lists: OLIN lists: MANOR lists: limmaGUI lists: ffpe lists: dyebias lists: DEXUS lists: BeadDataPackR lists: aroma.light lists: ArrayTools lists: beadarray lists: arrayQuality lists: arrayMvout lists: affyQCReport lists: affyPLM lists: affylmGUI lists: AffyExpress lists: waveTiling lists: KAnalyze lists: gprege lists: oneChannelGUI lists: CYCLE lists: LMGene lists: factDesign lists: pickgene lists: betr lists: NGSrich lists: SCAN.UPC lists: arrayQualityMetrics lists: CALIB lists: DEDS lists: Harshlight lists: MiChip lists: OCplus lists: bridge lists: FARMS lists: fRMA lists: genArise lists: lapmix lists: maCorrPlot lists: maSigPro lists: MACAT lists: maigesPack lists: MDQC lists: metaArray lists: nnNorm lists: plgem lists: PVCA lists: RAMA lists: stepNorm lists: virtualArray lists: LPE lists: DDBJ Sequence Read Archive lists: WegoLoc lists: Mugsy lists: Mspire-Simulator lists: CytoSPADE lists: vsn lists: ACME lists: GenGIS lists: CoGAPS lists: NTAP lists: ToppCluster lists: PyLOH lists: Nebula lists: Sequencher lists: flowFP lists: ChIPseeqer lists: CisGenome lists: CGHcall lists: rMAT lists: TileMap lists: Clustal Omega lists: BLASTN lists: SeqScape Software lists: BACContigEditor lists: Human Gene Mutation Database lists: AnimalTFDB lists: asSeq lists: Cuffdiff lists: BLASTX lists: SLqPCR lists: rSeqDiff lists: AffinDB lists: Enriched Domain Detector lists: A Classification of Mobile genetic Elements lists: PELICAN lists: nondetects lists: rlsim lists: Chilibot: Gene and Protein relationships from MEDLINE lists: unifiedWMWqPCR lists: HAPLOPAINTER lists: HOMOZYGOSITYMAPPER lists: QuasiSeq lists: sSeq lists: GERMLINE lists: MCMC.qpcr lists: CNVrd2 lists: TaLasso lists: pairedBayes lists: RNASeqBias lists: plateCore lists: PLINK lists: MACH 1.0 lists: PennSeq lists: FACTA+. lists: Prediction of Amyloid Structure Aggregation lists: TANGO lists: DNACLUST lists: InterMine lists: MSClust lists: ReCount - A multi-experiment resource of analysis-ready RNA-seq gene count datasets lists: RSVSim lists: TCC lists: SAMstrt lists: pRESTO lists: MEME Suite - Motif-based sequence analysis tools lists: PoissonSeq lists: CQN lists: GLiMMPS lists: TEMP lists: BEAGLE lists: SPP lists: BIRDSUITE lists: NASTIseq lists: BREAKDANCER lists: CAROL lists: COMPASS lists: CASAVA lists: flowClust lists: HSA lists: SPADE lists: AStalavista lists: Visual Molecular Dynamics lists: EXTREME lists: CYRILLIC lists: DINDEL lists: ASprofile lists: OrderedList lists: GenABEL lists: CCAT lists: Alt Event Finder lists: BroadPeak lists: SamSPECTRAL lists: THetA lists: TCW lists: GATK lists: Degust lists: flowUtils lists: DAVID lists: RchyOptimyx lists: StatAlign lists: Arabidopsis thaliana Protein Interactome Database lists: FGED lists: ExpressionPlot lists: S-MART lists: Pecan lists: SeqMonk lists: Ray lists: tbrowse lists: Bacteriome.org lists: Apollo lists: RAVEN lists: PEDIGRAPH lists: BAliBASE lists: TEQC lists: rSNPs MAPPER lists: rSNPBase lists: SNP Function Portal lists: flowType lists: SNPper lists: MADELINE lists: CanSNPer lists: ADaCGH2 lists: SGA lists: NormaCurve lists: GapMis lists: TRAMS lists: SNPMeta lists: SNPAAMapper lists: METAL lists: OLORIN lists: openADAM lists: SeqEM lists: SHARCGS lists: DMET-Analyzer lists: PEDHUNTER lists: AffyPipe lists: pSTIING lists: PTMcode lists: SHORTY lists: POLYMUTT lists: TissueNet - The Database of Human Tissue Protein-Protein Interactions lists: TRIP Database lists: SNVer lists: BISC lists: Primate Orthologous Exon Database lists: PurBayes lists: PyroHMMvar lists: flowViz lists: ChIPSeq Peak Finder lists: SpliceAid-F lists: Vennt lists: flowTrans lists: Spliceosome Database lists: cisRED: cis-regulatory element lists: ASPicDB lists: SAMTOOLS lists: HEXEvent lists: DBASS lists: FlyFactorSurvey lists: SNAP - SNP Annotation and Proxy Search lists: STIFDB lists: Cake lists: MPromDb lists: ProTISA lists: circlize lists: AmiGO lists: flowQB lists: Cinteny lists: RegPrecise lists: STRUCTURE lists: SVA lists: SYZYGY lists: TcoF lists: Matchprot lists: WebGeSTer DB lists: pfSNP lists: shinyTANDEM lists: CistromeMap lists: metaRNASeq lists: ZOOM lists: flowPlots lists: ImaGene lists: VAAST lists: ARACNE lists: FR-HIT lists: PROVEAN lists: flowPhyto lists: flowCore lists: flowMerge lists: RankAggreg lists: ConsensusPathDB lists: MAIA (Microarray Image Analysis) lists: CORUM lists: CoryneRegNet lists: miso-lims lists: COSMIC - Catalogue Of Somatic Mutations In Cancer lists: cpnDB: A Chaperonin Database lists: flowMap lists: rmeta lists: flowMeans lists: CTCFBSDB lists: spliceR lists: flowMatch lists: flowFit lists: DEMI lists: Binding MOAD lists: DBD: Transcription factor prediction database lists: CodonCodes TraceViewer lists: RelocaTE lists: MAGE lists: flowCyBar lists: Iterative Signature Algorithm lists: Variant Reporter Software lists: RepARK lists: PolyPhred lists: dbSNP lists: BEETL-fastq lists: DWGSIM lists: Ensembl lists: DBTBS lists: MIAME lists: MAQC lists: HaploClique lists: DBTSS: Database of Transcriptional Start Sites lists: DNA DataBank of Japan (DDBJ) lists: ISO lists: SBARS lists: Clinical and Laboratory Standards Institute lists: JGI Genome Portal lists: Cancer Genomics Consortium lists: BEAT lists: DOMINO: Domain peptide interactions lists: R Tutorial - An R Introduction to Statistics lists: R Tutorial lists: DOMINE: Database of Protein Interactions lists: GenomeSmasher lists: DOSY Toolbox lists: MUMA lists: Database of Rice Transcription Factors lists: VennDiagram lists: Quick-R lists: EcoCyc lists: Tree of Life lists: flowBeads lists: EDAS - EST-Derived Alternative Splicing Database lists: eggNOG lists: NRDR lists: YLoc lists: CAMERA - Collection of annotation related methods for mass spectrometry data lists: EID: Exon-Intron Database lists: WoLF PSORT lists: Entrez Gene lists: Mason lists: QualitySNPng lists: EPDnew lists: realSFS lists: pymzML lists: RUbioSeq lists: PBSIM lists: PennCNV lists: pIRS lists: PeptideShaker lists: ShotGun lists: Gibbs Motif Sampler lists: Zebrafish Information Network (ZFIN) lists: Wessim lists: BioStar lists: MBASED lists: discoSnp lists: RVD lists: SEEK lists: MethylAid lists: ExomeDepth lists: libmgf lists: Autophagy Database lists: T3DB lists: RopeBWT2 lists: e-Driver lists: sapFinder lists: PharmGKB lists: CTF lists: SuperTarget lists: DrugBank lists: PANDAseq lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: leeHom lists: Reflect lists: Mapix lists: Rainbow lists: CASBAH lists: TelSeq lists: Pathview lists: GLProbs lists: rBiopaxParser lists: DSS lists: GATE lists: NetPathMiner lists: NMR metabolomics database of Linkoping lists: GenBank lists: HINT lists: libCSAM lists: RNA Abundance Database lists: GeneCards lists: BINOCh lists: AliView lists: TherMos lists: ANDES lists: PacmonSTR lists: RMassBank lists: FisHiCal lists: Mutation Annotation and Genomic Interpretation lists: Circleator lists: IMEx - The International Molecular Exchange Consortium lists: Batch Oligo Selection Script lists: iontree lists: MicroVigene lists: Greengenes lists: Basic4Cseq lists: rDock lists: hot scan lists: International HapMap Project lists: BiGGR lists: mzR lists: PAPi lists: pNovo+ lists: COV2HTML lists: CODEHOP lists: CNVassoc lists: PRO lists: Hollywood lists: StreamingTrim lists: pLabel lists: HomoloGene lists: aCGH.Spline lists: pBuild lists: Time-series RNA-seq Analysis Package lists: CGHnormaliter lists: Type-III-Secretion-System related database lists: SMRT-Analysis lists: CPTRA lists: mtDB - Human Mitochondrial Genome Database lists: AltAnalyze - Alternative Splicing Analysis Tool lists: Chimera lists: IMG System lists: Babelomics lists: MRFSEQ lists: ms lims lists: ChIPMonk lists: Gel2DE lists: UCSF Spot lists: ProRata lists: R-pbutils lists: MITOMAP - A human mitochondrial genome database lists: NOISeq lists: Dpos lists: Gene Weaver lists: pFind lists: Canadian College of Medical Geneticists lists: BRAIN lists: Isopat lists: R-pbh5 lists: pbh5tools lists: SMRT View lists: JASPAR lists: enviPat lists: bwtool lists: MoSDi lists: tweeDEseq lists: DIALIGN lists: PacBioToCA lists: DiNuP lists: Gutentag lists: Parametric Time Warping lists: SurvComp lists: SASqPCR lists: enviPick lists: GeneFisher lists: Triplex lists: MPprimer lists: MIPE lists: MFEprimer lists: DnaSP lists: FAS-DPD lists: SURPI lists: MAPPER - Multi-genome Analysis of Positions and Patterns of Elements of Regulation lists: MachiBase lists: Primer3Plus lists: e-PCR lists: NeuroMab lists: In-Silico PCR lists: JETTA lists: MapViewer lists: Primer-BLAST lists: WormBase lists: eQtlBma lists: JuncBASE lists: MethDB lists: pairheatmap lists: MISO lists: HYDEN lists: mrsFAST lists: PredictNLS lists: mrCaNaVaR lists: NovelSeq lists: PlantLoc lists: Primer3 lists: FastSNP lists: Proteome Analyst Specialized Subcellular Localization Server lists: NYCE lists: GeneScissors lists: ngLOC lists: MultiLoc lists: GeneCruiser lists: MetaLocGramN lists: FastPCR lists: miRNAMap lists: HUPO Proteomics Standards Initiative lists: SaskPrimerFS lists: rDiff lists: Database of Interacting Proteins (DIP) lists: Solas lists: Pipeliner lists: iLoc-Animal lists: QDNAseq lists: ResponseNet lists: SynSysNet lists: XORRO lists: Stacks lists: SECISearch3 and Seblastian lists: SALT lists: HyperTree lists: Primer Designer lists: r3Cseq lists: Gene Set Enrichment Analysis lists: Piano lists: PHAST lists: NHGRI: Establishing a Central Resource of Data from Genome Sequencing Projects lists: NGSadmix lists: Gemi lists: Talking Glossary of Genetic Terms lists: PathGuide: the pathway resource list lists: SplicingCompass lists: RNAhybrid lists: LUMPY lists: Geospiza lists: SpliCQ lists: ORFprimer lists: JCVI Primer Designer lists: Assembly Based ReAligner lists: deFuse lists: Xenbase lists: PoPoolation2 lists: OmicCircos lists: Amplicon lists: PrimerSeq lists: Genedata Expressionist lists: biobambam lists: RCircos lists: ggbio lists: DAFGA lists: MIPgen lists: PicTar lists: BlockClust lists: PIRSF lists: miR-PREFeR lists: MouseNET lists: PlantProm DB lists: MAGI lists: PLANTTFDB lists: ALDEx2 lists: qBasePLUS lists: RefGenes lists: HTqPCR lists: BestKeeper lists: NanoStringNorm lists: NormFinder lists: NormqPCR lists: PolymiRTS lists: PPDB: Plant Promoter Database lists: ddCt lists: GEOSS lists: PReMod lists: EasyqpcR lists: NanoStriDE lists: GBSA lists: LaSSO lists: NAPPA lists: nSolver Analysis Software lists: MAGENTA lists: MetABEL lists: ProNIT lists: genomation lists: metagen lists: BMIQ lists: FadE lists: metaphor lists: SWAN lists: PROSITE lists: Parseq lists: qPrimerDepot lists: Bpipe lists: Nestly lists: Snakemake lists: SNAPE-pooled lists: NGSANE lists: jmzTab lists: JISTIC lists: Savant lists: MetaSKAT lists: Human Variome Project lists: PoPoolation lists: RefSeq lists: MultiPhen lists: RegulonDB lists: MF-GE lists: PheWAS R Package lists: EBSeq lists: MSMS lists: RAREMETAL lists: RevMan lists: GEPAT lists: Polyester lists: SET lists: J-Express lists: UEA sRNA toolkit lists: Osprey lists: RINS lists: PyroBayes lists: PEAR lists: JATAC lists: SeqExpress lists: Quantitative Enrichment of Sequence Tags lists: Pash 3.0 lists: Factorbook lists: FlyTF.org lists: My Cancer Genome lists: Pathosystems Resource Integration Center lists: MSG lists: InsertionMapper lists: PubMed Central lists: GeneCommittee lists: INMEX lists: TagDust lists: PASS-bis lists: HLASeq lists: FIDEA lists: EGAPP lists: DCTD lists: Hapmix lists: BamView lists: PerM lists: Mercury lists: CDP lists: CB-Commander lists: BSRD lists: DER Finder lists: Artemis: Genome Browser and Annotation Tool lists: PeaKDEck lists: PubChem lists: Babel lists: bcbio-nextgen lists: SIDER lists: EpiGRAPH lists: DRUT lists: Ancestrymap lists: VIROME lists: Vanator lists: FACIL lists: Velvet-SC lists: SNiPer-HD lists: Squeezambler lists: UniGene lists: SCPD - Saccharomyces cerevisiae promoter database lists: GASSST lists: SnoopCGH lists: Taverna lists: PASHA lists: miRDeepFinder lists: STAR lists: Spanki lists: VAMPS lists: Basic OligoNucleotide Design lists: Tree and reticulogram REConstruction lists: ACT: Artemis Comparison Tool lists: SPInDel lists: Kdetrees lists: tree editor lists: Genomedata lists: BioDiscovery Nexus Copy Number lists: TETRA lists: MetaCluster-TA lists: DELLY lists: QuickGO lists: TAIR lists: CompostBin lists: Nonpareil lists: BioPig lists: LMAT lists: AbundanceBin lists: TaxSOM lists: NuChart lists: ProViDE lists: UnifiedGenotyper lists: SOrt-ITEMS lists: RAIphy lists: Human DNA Polymerase Gamma Mutation Database lists: Pfam lists: Distributed String Mining Framework lists: Pplacer lists: deStruct lists: Phymm and PhymmBL lists: USeq lists: NucPosSimulator lists: NBC lists: SVMerge lists: MLTreeMap lists: SVseq lists: SEQanswers lists: PRISM - Pair Read Informed Split Mapper lists: miRNAKey lists: MG-RAST lists: Information Hyperlinked Over Proteins lists: PubMed lists: MetaPhyler lists: MARTA lists: NCBI BioSample lists: BioSample Database at EBI lists: DiScRIBinATE lists: VariationHunter lists: NCBI BLAST lists: IBIS: Inferred Biomolecular Interactions Server lists: NCBI Sequence Read Archive (SRA) lists: MetaPhlAn lists: Classifier for Metagenomic Sequences lists: MapAl lists: European Genome phenome Archive lists: TemplateFilter lists: Minia lists: MiTCR lists: M-pick lists: CARMA lists: SLIQ lists: DNAPlotter lists: AmphoraNet lists: UPARSE lists: SOPRA lists: ESPRIT-Tree lists: HPC-CLUST lists: mirWIP lists: SSPACE lists: GoMapMan lists: G-BLASTN lists: SINA lists: Bambus lists: AGORA lists: GRASS lists: MIP Scaffolder lists: Scarpa lists: MBCluster.Seq lists: cortex var lists: Flux Simulator lists: BEERS lists: SNPeffect lists: MMAPPR lists: Cloudbreak lists: comrad lists: qSNP lists: SomaticIndelDetector lists: SomaticSniper lists: aldex lists: UnoSeq lists: Traph lists: RNA-SeQC lists: PoPoolation TE lists: RetroSeq lists: T-lex lists: SLIDE lists: VFS lists: Project HOPE lists: PANTHER Evolutionary analysis of coding SNPs lists: rQuant lists: Naturejobs lists: jobs.ac.uk lists: ASOoViR lists: RNA-eXpress lists: MethPipe lists: AnnTools lists: AVIA lists: CandiSNPer lists: CHAoS lists: COVA lists: methylKit lists: dbNSFP lists: GESND lists: VAGrENT lists: Human Splicing Finder lists: NGS-SNP lists: Oncotator lists: PHAge Search Tool lists: SCAN lists: SeqAnt lists: SNPdat lists: ORMAN lists: FRCbam lists: SNPdbe lists: SnpEff lists: SNPnexus lists: SPOT - Biological prioritization after a SNP association study lists: VARIANT lists: ABSOLUTE lists: ExPANdS lists: HIVCD lists: PathSeq lists: READSCAN lists: VirusFinder lists: VirusSeq lists: PredictHaplo lists: QuRe lists: ShoRAH lists: V-Phaser 2 lists: NSMAP lists: FlowSim lists: SimRare lists: SAMtools/BCFtools lists: MiTie lists: GeneTalk lists: iReckon lists: Genomic Datasharing lists: IsoformEx lists: IQSeq lists: ERANGE lists: FusionMap lists: Bioinformatics(at)school lists: PhenoMan lists: Models of SHM Targeting and Substitution lists: AGE lists: Breakpointer lists: CLEVER Toolkit lists: Clippers lists: CREST lists: Indelocator lists: GASVPro lists: Hydra lists: inGAP lists: VelociMapper lists: PEMer lists: SPLITREAD lists: SpliceSeq lists: Scripture lists: Omicsoft Sequence Aligner lists: SOAPindel lists: G-Mo.R-Se lists: SEECER lists: RSeQC lists: SeqWare lists: CloVR lists: PolySearch lists: MiRPara lists: PIE the search lists: miRdSNP lists: Hmmer lists: MuGeX lists: SysCall lists: KGGSeq lists: MycoCosm lists: EBIMed lists: HighWire lists: Coremine Medical lists: Assembly Likelihood Estimator lists: CoPub lists: ABS filter lists: NCBO Annotator lists: CHANCE lists: phantompeakqualtools lists: CoIN lists: SwissRegulon lists: becas lists: GEM lists: Anne O'Tate lists: (at)Note lists: PeakSeq lists: FaBox lists: CoverageCalculator lists: Spliceman lists: Yabi lists: footprintDB lists: MolBioLib lists: Moa lists: PRISM (Stanford database) lists: Knime4Bio lists: Ergatis lists: bioKepler lists: Platypus lists: PING lists: Binding and Expression Target Analysis lists: BioExtract lists: Bio-Linux lists: NeuroLex lists: ChEA lists: ChIPBase lists: CistromeFinder lists: pyDNase lists: hmChIP lists: HOCOMOCO lists: PAZAR lists: TFinDIT lists: AtProbe lists: DATFAP lists: StSNP lists: SolexaQA lists: TOBFAC lists: MapNext lists: BSeQC lists: SKIPPY lists: SAMStat lists: QC-Chain lists: Bis-SNP lists: Bisulfighter lists: CpG MPs lists: CyMATE lists: GobyWeb lists: Kismeth lists: MethylExtract lists: MethylViewer lists: MLML lists: MSC lists: PRINSEQ lists: NGSQC lists: NGS QC Toolkit lists: NextClip lists: Geneious Microsatellite Plugin lists: DistMap lists: PRIMEGENS lists: VDJ lists: Bowtie lists: CASHX lists: CUSHAW lists: CUSHAW2-GPU lists: GNUMAP lists: GSNAP lists: Kraken lists: Maq lists: MOSAIK lists: mrFAST lists: NextGenMap lists: ngsTools lists: PASS lists: Jellyfish lists: TIGRFAMS lists: Segemehl lists: SeqMap lists: SHRiMP lists: WHAM lists: SMALT lists: Scalable Nucleotide Alignment Program lists: SOAP3 lists: SOAPaligner/soap2 lists: Stampy lists: TreQ lists: IdCheck lists: HTSeq lists: Hadoop-BAM lists: MACE lists: Fulcrum lists: FreClu lists: FLASH lists: FASTX-Toolkit lists: Hiclib lists: FastQC lists: cd-hit-454 lists: CGAT lists: ea-utils lists: Genetic Testing Registry lists: Ridom TraceEdit lists: HiCUP lists: TopoSNP lists: TM4 lists: WebArrayDB lists: Advanced Sequence Automated Pipeline lists: Unipro UGENE lists: SeqTrace lists: MethylomeDB lists: FinchTV lists: DNA Chromatogram Explorer lists: Chromaseq lists: OXBench lists: Sybil lists: cancergrid-tma lists: PathXL TMA lists: Slidepath lists: Stanford TMA Software lists: TMA Navigator lists: TMA-Combiner lists: TMAJ lists: X-Tile lists: Bismark lists: jMHC lists: VAGUE lists: Tractor db lists: SAMtools Text Alignment Viewer lists: snp-search lists: TRANSFAC lists: Systems Transcriptional Activity Reconstruction lists: SPOT lists: LookSeq lists: Staden Package lists: Maqview lists: NGSView lists: BS Seeker lists: WISECONDOR lists: MagicViewer lists: Bambino lists: Consed lists: DiProGB lists: BSMAP lists: netClass lists: BSmooth lists: DMRforPairs lists: SeqGSEA lists: CLIPZ lists: PePr lists: MutationAssessor lists: American College of Medical Genetics and Genomics lists: Biopieces lists: SNPsandGO lists: Unified Human Interactome lists: OLego lists: PIPE-CLIP lists: GoPubMed lists: SPLINTER lists: GraphProt lists: Cascade lists: PASSion lists: JEPETTO lists: dna-bison lists: aLFQ lists: BLESS lists: VirHostNet: Virus-Host Network lists: CAFE lists: VirusMINT lists: GNUMAP-BS lists: MetaQC lists: YuGene lists: h5vc lists: IQRray lists: Yeast Search for Transcriptional Regulators And Consensus Tracking lists: LAST lists: ScerTF lists: Tangram lists: ClinVar lists: estMOI lists: FCROS lists: WashU Epigenome Browser lists: deepSNV lists: OMPdb lists: Rosalind lists: pepStat lists: PANOGA lists: InterSpecies Analysing Application using Containers lists: GeneTrail lists: MEDIE lists: DBM-DB lists: SpliceDB lists: RUVSeq lists: Genomic Standards Consortium lists: Galaxy lists: VICUNA lists: Lists2Networks lists: PredictSNP lists: ADGO lists: KOBAS lists: GeneTerm Linker lists: Computational Genomics Analysis Tools lists: Antibody Registry lists: BHC lists: Wigwams lists: BETASEQ lists: PhyloBayes lists: MEGA-MD lists: CGARS lists: Magic lists: epigenomix lists: QCGWAS lists: AbsCN-seq lists: DupRecover lists: Socrates lists: CMGRN lists: SNPdryad lists: ALEA lists: MSIsensor lists: TSSer lists: IRanges lists: SILVA lists: kFM-index lists: Bioconductor lists: CHASM/SNV-Box lists: HTQC lists: GeneNetworkBuilder lists: Jalview lists: SV-M lists: Hereditary Hearing Loss Homepage lists: ATRHUNTER lists: seq crumbs lists: Google App Engine lists: COHCAP lists: MethylSeekR lists: SAAP-RRBS lists: targetHub lists: SRAdb lists: Picard lists: NGS-QC Generator lists: ART lists: HOMSTRAD - Homologous Structure Alignment Database lists: DECIPHER lists: GeneReviews lists: GigaScience lists: Leiden Open Variation Database lists: DGIdb lists: casper lists: htSeqTools lists: GWAMA lists: Orphanet lists: Ribosomal Database Project lists: DroID - Drosophila Interactions Database lists: BEDTools lists: PROGENY lists: APOLLOH lists: TIGAR lists: FLUX CAPACITOR lists: ChIPXpress lists: SpliceGrapher lists: waviCGH lists: Rice Genome Annotation lists: DMEAS lists: SoftSearch lists: SToRM lists: ALEXA-Seq lists: methVisual lists: DeconRNASeq lists: Samscope lists: AthaMap lists: SpliceTrap lists: Consensus CDS lists: GARM lists: Decombinator lists: FDM lists: fitGCP lists: EDASeq lists: Cscan lists: Next-gen Sequencing Scaffolding Tool lists: geNORM lists: GASiC lists: Ensembl Genomes lists: Qudaich lists: Nex-StoCT lists: Virmid lists: BIGpre lists: mubiomics lists: REDfly Regulatory Element Database for Drosophilia lists: EBCall lists: ENCODE lists: GBS barcode splitter lists: Sickle lists: JointSNVMix lists: RIPSeeker lists: ShortRead lists: TaxoAssignement lists: mutationSeq lists: QUASR lists: simhtsd lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation lists: GBrowse lists: seqbias lists: EagleView lists: HIA lists: qrqc lists: Genomes Unzipped lists: eXpress lists: ArtificialFastqGenerator lists: BarraCUDA lists: RazerS lists: Therapeutic Target Database lists: YeTFaSCo lists: PrimerBank lists: MORGAN lists: CROP lists: MeDUSA lists: Arabidopsis Gene Regulatory Information Server lists: SimSeq lists: MetMap lists: MIGen lists: eDMR lists: ProDom lists: BAMStats lists: CD-HIT-OTU lists: microRNA.org lists: Database of Genomic Variants lists: DeconSeq lists: Psort lists: Kinetic Data of Bio-molecular Interaction lists: PRODORIC lists: Database of Poplar Transcription Factors lists: BioRAT lists: Database of Arabidopsis Transcription Factors lists: RTPrimerDB- The Real-Time PCR and Probe Database lists: Pripper lists: COG lists: Yeast Intron Database lists: QDMR lists: Haldanes Sieve lists: Kevin's GATTACA World lists: Next-Gen Sequencing lists: Public Expression Profiling Resource lists: EpiExplorer lists: swDMR lists: SEURAT lists: EVORA lists: Taipan lists: GEB lists: YM500 lists: peakrots lists: Peakzilla lists: ECgene: Gene Modeling with Alternative Splicing lists: polyaPeak lists: RSEG lists: BigWig and BigBed lists: DriverDB lists: NECTAR lists: miRGator lists: BRIG lists: AmpliconNoise lists: HilbertVis lists: Variant Effect Predictor lists: GenoTan lists: Search Tool for Interactions of Chemicals lists: HighSSR lists: YHap lists: INVERTER lists: Annotation-Modules lists: lobSTR lists: BiQAnalyzer HT lists: UCHIME lists: ActiveDriver lists: MMSEQ lists: Anno-J lists: DADA lists: CanPredict lists: QIIME lists: OnlineCall lists: Seven Bridges Genomics lists: ChroMoS lists: Gene Array Analyzer lists: IsaCGH lists: RJaCGH lists: CAT lists: Ultrasome lists: DEGseq lists: World Health Organization lists: FoldX lists: VAMP lists: OMICS! OMICS! lists: SeqPig lists: Condel lists: DMI lists: DARIO lists: DrGaP lists: eXtasy lists: Tute Genomics lists: Exon Array Analyzer lists: Biodoop lists: OligoPicker lists: InVEx lists: Textpresso lists: YunBe lists: DWD lists: PASTA lists: isva lists: QPALMA lists: MuSiC lists: svd lists: QuasiRecomb lists: RUM lists: XPN lists: Sequgio lists: ExpressYourself lists: FGDP lists: DELIMINATE lists: GAAS lists: Gecko lists: DNAzip lists: CMAP lists: SeqSaw lists: GReEn lists: Gzip lists: MFCompress lists: NGC lists: Quip lists: SIMHAP lists: CPSS lists: RLZ lists: A sample size calculation method lists: iMir lists: isomiRex lists: ISRNA lists: SeqBuster lists: shortran lists: SpliceMap lists: Generic Exome Analysis Plan lists: SCALCE lists: mirTools lists: Subread lists: isomiRID lists: Supersplat lists: TrueSight lists: RNASEQR lists: MicroSNiPer lists: BitSeq lists: MSbind lists: CLIIQ lists: IsoEM lists: Omixon blog lists: RNA-Seq Blog lists: AllSeq lists: ABMapper lists: EULER-SR lists: ContextMap lists: Geneious lists: TargetMiner lists: SOAPsnp lists: Gossamer lists: CRAC lists: JR-Assembler lists: vipR lists: MaSuRCA lists: Meraculous lists: ABySS lists: MIRA lists: PE-Assembler lists: QSRA lists: ALLPATHS-LG lists: IMGT/V-QUEST lists: Celera assembler lists: CloudBrush lists: SOAPdenovo lists: SSAKE lists: SUTTA lists: Velvet lists: Atlas2 lists: ComB lists: CopySeq lists: CRISP lists: FamSeq lists: FreeBayes lists: GAMES lists: glfMultiples lists: MoDIL lists: MISA lists: SSRLocator lists: SSR pipeline lists: T-REKS lists: TRhist lists: AgileVariantMapper lists: HomSI lists: Align-GVGD lists: CUPSAT lists: LS-SNP/PDB lists: MAPP lists: mCSM lists: MutationTaster lists: MutPred lists: MutSig lists: nsSNPAnalyzer lists: Oncodrive-fm lists: PhD-SNP lists: PMut lists: PriVar lists: SAPRED lists: SNAP - Effects of Single Amino Acid Substitutions on Protein Function lists: SNPs3D lists: TransFIC lists: Diplotyper lists: EMINIM lists: HapCUT lists: HARSH lists: HapFABIA lists: Relate lists: Pedigree-Draw lists: Pedimap lists: Phylogeny Programs lists: NHLBI Grand Opportunity Exome Sequencing Project lists: PhenCode lists: SNP and indel Imputability lists: draw-sneakpeek lists: GensearchNGS lists: HugeSeq lists: MutFinder lists: RTG Variant lists: reseqtools lists: SIMPLEX lists: TREAT lists: WEP lists: breseq lists: SVDetect lists: CEQer lists: CONTRA lists: ExomeCNV lists: CNAnorm lists: CNAseg lists: CnD lists: CNValidator lists: CNVer lists: CNVnator lists: Control-FREEC lists: JointSLM lists: readDepth lists: rSW-seq lists: SegSeq lists: CoRAL - Classification of RNAs by Analysis of Length lists: miRDeep lists: miREval lists: miRExpress lists: miRspring lists: omiRas lists: ShortStack lists: tRNAscan-SE lists: RNAsnp lists: BCmicrO lists: C-mii lists: DIANA-LncBase lists: TarBase lists: HOCTAR lists: SICER lists: MapSplice lists: TargetScan lists: MicroCosm Targets lists: MicroMUMMIE lists: miRDB lists: miRNA lists: miRNAminer lists: miRTar lists: COPS lists: PITA lists: PMTED lists: dPeak lists: E-RANGE lists: FindPeaks lists: HMCan lists: HPeak lists: MICSA lists: MOSAiCS lists: NEXT-peak lists: PeakRanger lists: RRBSMAP lists: SIPeS lists: SISSRs lists: T-PIC lists: ZINBA lists: MAnorm lists: POLYPHEMUS lists: ChIPDiff Library Comparison lists: DBChIP lists: diffReps lists: DIME lists: AlignACE lists: Arpeggio lists: ChIPModule lists: CompleteMOTIFs lists: diChIPMunk lists: F-Seq lists: HOMER lists: kmer-SVM lists: LASAGNA-Search lists: oPOSSUM lists: Pscan-ChIP lists: RSAT peak-motifs lists: TFBSGroup lists: TFFM lists: NOrMAL lists: NPS lists: NSeq lists: Nu-OSCAR lists: NucDe lists: NucHunter lists: nucleR lists: LegumeTFDB lists: PlanTAPDB lists: PlantTFcat lists: PlnTFDB lists: SoyDB lists: TreeTFDB lists: mCarts lists: Piranha lists: MeRIP-PF lists: B-SOLANA lists: BatMeth lists: QUMA lists: MethMarker lists: Genomic HyperBrowser lists: BWA lists: CloudBurst lists: ERNE lists: PPSEQ lists: SEAL lists: 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Hammer lists: HiTEC lists: B-Fabric lists: BIKA lists: Galaxy LIMS lists: SBEAMS lists: discovering-cse lists: MT-Toolbox lists: AdapterRemoval lists: AlienTrimmer lists: Btrim lists: CANGS lists: ConDeTri lists: Quake lists: QuorUM lists: cutadapt lists: QTrim lists: sabre lists: Scythe lists: SeqtrimNEXT lists: TagCleaner lists: Trim Galore lists: Trimmomatic lists: Coral lists: DecGPU lists: ECHO lists: RACER lists: CLC Genomics Workbench lists: DNASTAR: Lasergene Genomics Suite lists: Genomatix Solutions lists: SNP and Variation Suite lists: JMP Genomics lists: NARWHAL lists: NextGENe lists: Partek Genomics Suite lists: SeqGene lists: SeqPipe lists: SHORE lists: Genboree Workbench lists: Ibis lists: naiveBayesCall lists: htseq-count lists: ABNER lists: BioCaster lists: LitInspector lists: RefMED lists: Eucalyptus lists: HP Public Cloud lists: Joyent lists: Rackspace lists: VirtualBox lists: BBSeq lists: VMware lists: Apache Hadoop lists: Windows Azure lists: BaseSpace lists: BioVLAB lists: CloudBioLinux lists: DNAnexus lists: Genestack lists: GenomeCloud lists: Globus Genomics lists: Scotty lists: EBARDenovo lists: IDBA-Tran lists: IsoInfer lists: KisSplice lists: FusionFinder lists: FusionHunter lists: Oases lists: Rnnotator lists: STM lists: TopHat-Fusion lists: RNAseqViewer lists: Eoulsan lists: FX lists: Guide lists: Oncofuse lists: Oqtans lists: PRADA lists: R-SAP lists: RobiNA lists: RseqFlow lists: GeneStitch lists: Genovo lists: IDBA-UD lists: Meta-IDBA lists: MetAMOS lists: MetaVelvet lists: Newbler lists: Phrap lists: Ray Meta lists: BLAT lists: Mega BLAST lists: UCLUST algorithm lists: eXPatGen lists: PhyloPythiaS lists: CAMERA lists: CoMet lists: METAREP lists: RAMMCAP lists: FGENESH lists: FragGeneScan lists: GeneMark lists: Glimmer lists: Glimmer-MG lists: HMMgene lists: MetaGeneAnnotator lists: MGC lists: Prodigal lists: Explicet lists: MetaSee lists: SynTView lists: MetaSim lists: NeSSM lists: MEGAN lists: MOCAT lists: pyGCluster lists: CancerResource lists: ARTIVA lists: mothur lists: QIIME lists: RTG Metagenomics lists: vegan lists: WebMGA lists: PTP lists: GeneTack lists: JiffyNet lists: ArrayMiner lists: Genomics of Drug Sensitivity in Cancer lists: SuperCYP lists: AutoDock Vina lists: CGDB lists: Potassium Channel Database lists: Orientations of Proteins in Membranes database lists: PDBTM lists: PREDDIMER lists: TMDET lists: BaCelLo lists: Cell-PLoc lists: INSDC lists: CELLO lists: ClubSub-P lists: CoBaltDB lists: Euk-mPLoc lists: HSLPred lists: iLoc-Plant lists: KnowPredsite lists: University of Pittsburgh, Health Sciences Library System lists: CaMPDB lists: TIGRESS lists: OMA Browser lists: orthAgogue lists: OrthoDB lists: QuartetS-DB lists: NGS Leaders lists: reddit lists: Stack Overflow lists: CoreGenomics lists: Bio-IT World lists: Bioinformatics.fr lists: Bioinformaticsweb lists: Getting Genetics Done lists: SIOMICS lists: HTS Mappers lists: Microarrays.org lists: Next Generation Sequencing WikiBook lists: 1DegreeBio lists: Antibody Portal lists: Antibody Validation Database lists: Biocompare Antibody Search Tool lists: AACC lists: APHA lists: APHL lists: FABIA lists: BiBench lists: ExpressionView lists: COALESCE lists: Gene ARMADA lists: GenoREAD lists: Bioinformatics Organization lists: International Society for Computational Biology lists: BioSpace lists: My Biomedical Informatics Blog lists: Bits and Bugs lists: Cancer Methylome System lists: DBCAT lists: Histone Systematic Mutation Database lists: Genome Alteration Print lists: methPrimerDB lists: TFClass lists: APPRIS lists: easyRNASeq lists: TSPM.R lists: ShrinkSeq lists: Syapse lists: VisSR lists: Standalone hamming lists: GenomeJack lists: digitagCT lists: CCAT (Combinatorial Code Analysis Tool) lists: GPU-Meta-Storms lists: AnalyzeReplication lists: DIYABC lists: FamAnn lists: GARNET lists: Algal Functional Annotation Tool lists: gsGator lists: Scramble lists: FiGS lists: PerlPrimer lists: CowCoDA lists: MZmine lists: OBI-Warp lists: CPFP lists: TOPP lists: swissPIT lists: Antilope lists: ICPL ESIQuant lists: MetExtract lists: MFPaQ lists: jmzReader lists: PRIDE Converter 2 lists: Pride-asap lists: thermo-msf-parser lists: SearchGUI lists: XTandem Parser lists: ProteoWizard lists: Maltcms lists: multiplierz lists: ADTEx lists: MatNMR lists: GSim lists: RASP lists: TE-locate lists: FIGG lists: Bpredictor lists: DIYA lists: MrBayes lists: Fastphylo lists: PhyloTreePruner lists: SNP ratio test lists: MOABS lists: CAMPways lists: compomics-utilities lists: DeNovoGUI lists: ProteoCloud lists: kruX lists: FingerID lists: proTRAC lists: SlideSort-BPR lists: SPINAL lists: HopeMap lists: SketchEl lists: GLARE lists: MCDL lists: NetMODE lists: Toxtree lists: Toxmatch lists: Viewmol lists: QuteMol lists: AHA lists: PBJelly lists: SAM format lists: PSimScan lists: NetCoffee lists: COBRApy lists: ORCA lists: Bionotate lists: Knowtator lists: MMAX2 lists: LAITOR lists: Connecting Overlapped Pair-End reads lists: iPapers lists: PyPedal lists: miRPlant lists: Simulate PCR lists: Scalpel lists: SAT-Assembler lists: CONDEX lists: ChiBE lists: diCal-IBD lists: MToolBox lists: ReviSTER lists: Allim lists: Ionwinze lists: VirVarSeq lists: GeneVenn lists: Pegasus-fus lists: GenoSIGHT lists: Cell motility lists: MSImageViewer lists: GlycReSoft lists: GlycanBuilder lists: ISDTool lists: cnvCapSeq lists: EC2KEGG lists: npstat lists: PoolHap lists: eALPS lists: LDx lists: PLEK lists: REDItools lists: NAIL lists: iMSAT lists: PrimerProspector lists: iceLogo lists: NESmapper lists: DHAC lists: AMS lists: Musite lists: PhosphoSiteAnalyzer lists: xMSanalyzer lists: MP-EST lists: HLAforest lists: LocalAli lists: A5-miseq lists: WaveCNV lists: Burrows-Wheeler transform lists: DNAcopy lists: CRLMM lists: motifRG lists: CNV Workshop lists: MotifLab lists: MMDiff lists: MiRaGE lists: OncoSNP-SEQ lists: LVSmiRNA lists: ExiMiR lists: OpenHelix Blog lists: EXCAVATOR-tool lists: RPA lists: CexoR lists: SWIPE lists: Isaac lists: CRAVAT lists: CMA lists: lumi lists: baySeq lists: edgeR lists: tRanslatome lists: SIFT lists: DNaseR lists: ANNOVAR lists: DEXSeq lists: ChIPpeakAnno lists: inSilicoMerging lists: minfi lists: Methylumi lists: miRNApath lists: affy lists: sva package lists: ArrayTrack lists: NGSmethDB lists: dmrFinder lists: Amazon Web Services lists: BEDOPS lists: rqubic lists: R-Bloggers.com lists: BicARE lists: iBBiG lists: eisa lists: Trowel lists: ChAMP lists: Acacia lists: cghMCR lists: GEN lists: Ngs backbone lists: Blue Collar Bioinformatics lists: Bioconductor mailing list lists: NCBI Assembly Archive Viewer lists: DiffBind lists: featureCounts lists: NarrowPeaks lists: GeneProf lists: DROMPA lists: CSAR lists: CSSP lists: TargetScore lists: CAZy lists: U.S. Food and Drug Administration lists: snapCGH lists: PhyloTree.org lists: MitoBreak lists: iChip lists: miRDeep* lists: CloudAligner lists: TurboNorm lists: InCroMAP lists: ProbeSelect lists: OligoWiz lists: GenomeView lists: SeqGenome Browser lists: GBrowse syn lists: MIG lists: Ringo lists: CRAM lists: Centers for Disease Control and Prevention lists: KungFq lists: SAMZIP lists: EDNA lists: MSAProbs lists: RLMM lists: OncoSNP lists: Onco-STS lists: ChIPOTle Peak Finder lists: charm lists: BiSeq lists: NxGview lists: MEDME lists: MEDIPS lists: MethylCoder lists: BSmapper lists: GRASSIUS lists: QcReads lists: SeqPrep lists: HECTOR lists: SHREC lists: hiCtools lists: BayesPeak lists: FishMicrosat lists: ChIPseqR lists: Rolexa lists: Swift lists: TraceTuner lists: seqMINER lists: miRecords lists: ComiR lists: MIReNA lists: MIREAP lists: miRDeep-P lists: RSEM lists: ncPRO-seq lists: AUTO-MUTE lists: vcf2MSAT lists: TopHat lists: cn.mops lists: SAMMate lists: FishingCNV lists: ABACUS lists: NGSpeAnalysis lists: Bamformatics lists: Genotype-Tissue Expression lists: IBDLD lists: HATS lists: SolSNP lists: RankProd lists: Trinity lists: Multivariate Analysis of Transcript Splicing lists: SNVMix lists: SNPTools lists: MendelScan lists: LoFreq lists: IMPUTE2 lists: GENE-counter lists: RNA CoMPASS lists: CoNAn-SNV lists: VCAKE lists: PRICE lists: LOCAS lists: Edena v3 lists: Contrail lists: AMOS lists: A5 lists: VDJFasta lists: Reptile lists: phyloseq lists: PhyloPhlAn lists: RDP FrameBot lists: QuantiSNP lists: Celera Genome Browser lists: AutoMap lists: mGOASVM lists: Genetic Genealogist lists: DSP lists: BRAT lists: cnvHiTSeq lists: Easyfig lists: ENA Sequence Search lists: bisReadMapper lists: palfinder lists: HiTC lists: IsoLasso lists: sam comp lists: CancerMutationAnalysis lists: muliAlignFree lists: CongrPE lists: CallSim lists: Tuxedo lists: SAPAS lists: PolyPhen-2 lists: GoGrid lists: Telescoper lists: RegRNA lists: dbCAN lists: HeurAA lists: CoNIFER lists: DiffSplice lists: MAP lists: DynamicProg lists: NGS Expert Blog lists: genCAT lists: SOCS lists: Monoclonal Antibody Index lists: BEADS lists: aCGH lists: RepeatSeq lists: CEM lists: Repitools lists: SeqSite lists: SmashCommunity lists: eProbalign lists: GPSeq lists: Antibody Links lists: SOAPsplice lists: CEDER lists: miRSeqNovel lists: PIA lists: SOAPdenovo-Trans lists: Wgsim lists: ChimeraSlayer lists: Mpstruct lists: RDXplorer lists: wapRNA lists: SeqTRACS lists: chimerascan lists: Human Transcriptome Database for Alternative Splicing lists: Crossbow lists: Cufflinks lists: HMMSplicer lists: MicroRazerS lists: psRNATarget lists: Trans-ABySS lists: NEUMA lists: Homologus lists: FusionSeq lists: Probalign lists: PLAN2L lists: DSAP lists: MEDEA lists: CNV-seq lists: GENSCAN lists: Alta-Cyclic lists: RosettaDock lists: MethyCancer lists: MED lists: PLACE- A Database of Plant Cis-acting Regulatory DNA Elements lists: Drosophila melanogaster Exon Database lists: RARTF lists: INCLUSive lists: ArrayOligoSelector lists: TreeView lists: dChip Software lists: Cluster lists: dChip Software lists: ScanAlyze lists: Avadis lists: GONUTS lists: PiNGO lists: KLEIO lists: ClinicalTrials.gov lists: Gene Ontology lists: Neuroscience Information Framework lists: ArrayExpress lists: SGD lists: SEQanswers Wiki lists: SMD lists: GOSlimViewer lists: OntoVisT lists: STRAP lists: GoFish lists: GOProfiler lists: FuncAssociate: The Gene Set Functionator lists: UCSC Genome Browser lists: UniPROBE lists: GREAT: Genomic Regions Enrichment of Annotations Tool lists: Whatizit lists: REViGO lists: Blast2GO lists: InterProScan lists: DiseaseMeth lists: caArray lists: NCBI Epigenomics lists: OMIM lists: Mouse Genome Informatics (MGI) lists: European Nucleotide Archive (ENA) lists: FlyBase lists: Ontology Lookup Service lists: MaizeGDB lists: Dictyostelium discoideum genome database lists: InterPro lists: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit lists: GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool lists: RamiGO lists: GeneCodis lists: IntAct lists: agriGO lists: GOblet lists: Gene Expression Omnibus lists: Biological General Repository for Interaction Datasets (BioGRID) lists: Ingenuity Pathway Analysis lists: Roadmap Epigenomics Project lists: PEER lists: KEGG lists: Antibodypedia lists: AcroMine lists: g:Profiler lists: HighWire Press lists: Biometric Research Branch: ArrayTools lists: R Project for Statistical Computing lists: Nu-OSCAR lists: Pedigree-Draw lists: Community Cyberinfrastructure for Advanced Marine Microbial Ecology Research and Analysis lists: ChIP-Atlas lists: ProLinks Database of Functional Linkages lists: Myrna lists: lilikoi lists: GOTrack lists: Ximmer lists: NAT/NCS2 Hound lists: VoxBlast lists: Splicing Express lists: RNA22 lists: miRWalk lists: miRmap lists: AbundantOTU+ lists: MutaGene lists: VecScreen lists: NMRProcFlow lists: Attie Lab Diabetes Database lists: Agilent MassHunter WorkStation - Qualitative Analysis for GC/MS lists: XYalign lists: fermi lists: metaPocket lists: DoG picker lists: TiltPicker lists: NeuroAnatomy Toolbox lists: MAxEntScan lists: MetaNeighbor lists: OmicsNet lists: Discovar assembler lists: Supernova assembler lists: Epik lists: Ligprep lists: PathwayMatcher lists: EMAN lists: Geno2MP lists: duphold lists: ConsensusClusterPlus lists: EpiFactors lists: fastp lists: NanoFilt lists: Heatmapper lists: Nuclear Hormone Receptor Scan lists: Metacell lists: OmicsSIMLA lists: ScaffMatch lists: MITE-Tracker lists: PCAGO lists: BinPacker lists: Bridger lists: RaceID lists: PRSice lists: cwl-metrics lists: mzStudio lists: OrthoFinder lists: SwiftOrtho lists: ClustVis lists: CWL-Airflow lists: CytExpert Software lists: Computational Suite for Bioinformaticians and Biologists lists: WTDBG lists: prank lists: MACS lists: NeuroAnatomy Toolbox lists: CentroidFold lists: pKiss lists: BIDS Validator lists: PILER lists: trimAl lists: NOVOPlasty lists: GeSeq lists: Diffusion Toolkit lists: PathwayNet lists: miRTarBase lists: CLC Genomics Workbench lists: PyNWB lists: FastProject lists: DiseaseMeth lists: WormAtlas lists: GeneATLAS lists: immuneXpresso lists: BioAssay Express lists: ChemRICH lists: TransDecoder lists: GADMA lists: Alien-hunter lists: ALTER lists: AMAP lists: Anfo lists: Aragorn lists: Arden lists: Ariba lists: Augustus lists: Avogadro lists: Axe lists: Baitfisher lists: BALLView lists: Bamtools lists: Barrnap lists: BEAST lists: BioPerl lists: bioSyntax lists: Bio-tradis lists: BOXSHADE 3.21 lists: Canu lists: Cassiopee lists: Cdbfasta lists: CD-HIT lists: Circlator lists: Clearcut lists: Clonalframe lists: ClonalOrigin lists: Clustal W2 lists: COILS: Prediction of Coiled Coil Regions in Proteins lists: Concavity lists: Cufflinks lists: cwltool lists: DIAMOND lists: DISULFIND lists: Database of Secondary Structure Assignments lists: Eigensoft lists: EMBOSS lists: ESTScan lists: FASTLINK lists: FastQC lists: FastTree lists: FigTree lists: Fsm-lite lists: Gamgi lists: Genome BioInformatics Research Lab - gff2ps lists: Ghemical lists: GIIRA lists: GROMACS lists: Gwyddion lists: Bioinformatics Toolkit lists: PyMOL lists: Biopython lists: PRESTO: Genetic Association Analysis Software lists: CummeRbund lists: ProtTest lists: Prokka lists: Computational Structural Biology Toolbox lists: LEfSe lists: jModelTest lists: khmer lists: Atac lists: LAMARC lists: FreeContact lists: libRoadRunner lists: TFBS lists: MicrobiomeUtilities lists: MINIMAC lists: MultiQC lists: Nanopolish lists: IgBLAST lists: PHYLIP lists: PhyML lists: Pilon lists: ADEGENET lists: phytools lists: R/QTL lists: RDKit: Open-Source Cheminformatics Software lists: RepeatMasker lists: SeaView lists: SEER lists: Seq-Gen lists: StringTie lists: THESIAS lists: Transterm lists: Vascular Modeling Toolkit lists: Aegean lists: andi lists: Bandage lists: Eagle lists: BioJava Project lists: Bio++ lists: BRAKER lists: Bustools lists: Centrifuge Classifier lists: ChromHMM lists: DeepNano lists: Ecopcr lists: Edtsurf lists: E-mem lists: Examl lists: Falcon lists: Fastaq lists: Fastml lists: Fastqtl lists: FSA lists: GARLI lists: Garlic lists: gdpc lists: GenomeTools lists: Gentle lists: Gff2aplot lists: gffread lists: GraPhlAn lists: Gubbins lists: Harvest-tools lists: HiLive lists: Hinge lists: HyPhy lists: Indelible lists: IQ TREE lists: Fastahack lists: Mash lists: MEGAHIT lists: Minimap2 lists: mosdepth lists: MUMmer lists: OptiType lists: Phyutility lists: Porechop lists: QIIME2 lists: Racon lists: Phangorn lists: pheatmap lists: Recognition of Errors in Assemblies using Paired Reads lists: RELION lists: Roary lists: Salmon lists: Scoary lists: University of Zurich SCRM - Cell-and Tissue Biobank lists: Seqtk lists: Short Read Sequence Typing for Bacterial Pathogens lists: Vmatch lists: ABACAS lists: AceDB lists: tRNAscan-SE lists: Antibody Resource Page is related to: COnsensus-DEgenerate Hybride Oligonucleotide Primers is related to: Classifier for Metagenomic Sequences is related to: Pedigree-Draw is related to: CAZy- Carbohydrate Active Enzyme is related to: PolyPhen: Polymorphism Phenotyping is related to: BioRAT is related to: dChip Software is related to: Rat Genome Database (RGD) is related to: Comparative Toxicogenomics Database (CTD) is related to: VISTA Enhancer Browser is related to: affy |
PMID:25024350 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_155571, r3d100012426 | https://doi.org/10.17616/R3PJ3N | http://omictools.com/ | SCR_002250 | genOMIC tools | 2026-08-06 09:25:37 | 34 | ||||
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HomoloGene Resource Report Resource Website 100+ mentions |
HomoloGene (RRID:SCR_002924) | HomoloGene | service resource, database, data or information resource | Automated system for constructing putative homology groups from complete gene sets of wide range of eukaryotic species. Databse that provides system for automatic detection of homologs, including paralogs and orthologs, among annotated genes of sequenced eukaryotic genomes. HomoloGene processing uses proteins from input organisms to compare and sequence homologs, mapping back to corresponding DNA sequences. Reports include homology and phenotype information drawn from Online Mendelian Inheritance in Man, Mouse Genome Informatics, Zebrafish Information Network, Saccharomyces Genome Database and FlyBase. | homolog, paralog, ortholog, genome, gene, protein, protein alignment, phenotype, conserved domain, homology, amino acid sequence, cell, dna, gold standard |
is used by: NIF Data Federation is used by: Nowomics is used by: MitoMiner is listed by: OMICtools is listed by: re3data.org is related to: OMIM is related to: Mouse Genome Informatics (MGI) is related to: Zebrafish Information Network (ZFIN) is related to: SGD is related to: FlyBase is related to: ProbeMatchDB 2.0 is related to: Biomine is related to: Consensus CDS has parent organization: NCBI |
PMID:23193264 | Free, Freely availalbe | nif-0000-02975, r3d100010781, OMICS_01544 | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=homologene, https://doi.org/10.17616/R3889F | SCR_002924 | NCBI HomoloGene | 2026-08-06 09:25:45 | 437 | |||||
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Entrez Gene Resource Report Resource Website 1000+ mentions |
Entrez Gene (RRID:SCR_002473) | NCBI_Gene, NCBI Genen NCBI Entrez | database, data or information resource | Database for genomes that have been completely sequenced, have active research community to contribute gene-specific information, or that are scheduled for intense sequence analysis. Includes nomenclature, map location, gene products and their attributes, markers, phenotypes, and links to citations, sequences, variation details, maps, expression, homologs, protein domains and external databases. All entries follow NCBI's format for data collections. Content of Entrez Gene represents result of curation and automated integration of data from NCBI's Reference Sequence project (RefSeq), from collaborating model organism databases, and from many other databases available from NCBI. Records are assigned unique, stable and tracked integers as identifiers. Content is updated as new information becomes available. | gene, gene expression, gene location, gene map, gene prediction, genome, genome sequence analysis, phenotype, nomenclature, gene mapping, protein, genetic code, function, annotation, gold standard, bio.tools |
is used by: Animal QTLdb is used by: NIF Data Federation is used by: LIPID MAPS Proteome Database is used by: DisGeNET is used by: Nowomics is used by: Cytokine Registry is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition is used by: Vesiclepedia is listed by: OMICtools is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: Rat Gene Symbol Tracker is related to: Gene Reference into Function is related to: Integrated Molecular Interaction Database is related to: Biomine is related to: SEGS is related to: STOP is related to: Coremine Medical is related to: Consensus CDS is related to: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit is related to: Array Information Library Universal Navigator is related to: biomaRt has parent organization: NCBI works with: Open Regulatory Annotation Database |
PMID:17148475 PMID:21115458 |
Free, Freely available | nif-0000-02801, biotools:entrez_gene, OMICS_01651, r3d100010650 | http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene, http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene, https://bio.tools/entrez_gene, https://doi.org/10.17616/R3603S | SCR_002473 | NCBI Gene, Gene - Gene mapped phenotypes, Gene - Gene and mapped phenotypes, Gene Database, GeneID | 2026-08-06 09:25:40 | 2830 | |||||
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MapViewer Resource Report Resource Website 100+ mentions |
MapViewer (RRID:SCR_003092) | Map Viewer | database, data or information resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 4, 2023. Database that provides special browsing capabilities for a subset of organisms in Entrez Genomes. Map Viewer allows users to view and search an organism's complete genome, display chromosome maps, and zoom into progressively greater levels of detail, down to the sequence data for a region of interest. If multiple maps are available for a chromosome, it displays them aligned to each other based on shared marker and gene names, and, for the sequence maps, based on a common sequence coordinate system. | genome, mapping, sequencing, chromosome |
is listed by: OMICtools is related to: NCBI Genome is related to: Consensus CDS has parent organization: NCBI |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00921, nif-0000-03103 | SCR_003092 | Entrez Map Viewer, NCBI Map Viewer | 2026-08-06 09:25:48 | 242 |
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Welcome to the NIF Resources search. From here you can search through a compilation of resources used by NIF and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that NIF has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on NIF then you can log in from here to get additional features in NIF such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into NIF you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
