WormBase
Resource Report
Resource Website
1000+ mentions
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WormBase (RRID:SCR_003098)
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WB, WB REF, WP
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service resource, data or information resource, data repository, database, storage service resource
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Central data repository for nematode biology including complete genomic sequence, gene predictions and orthology assignments from range of related nematodes.Data concerning genetics, genomics and biology of C. elegans and related nematodes. Derived from initial ACeDB database of C. elegans genetic and sequence information, WormBase includes genomic, anatomical and functional information of C. elegans, other Caenorhabditis species and other nematodes. Maintains public FTP site where researchers can find many commonly requested files and datasets, WormBase software and prepackaged databases.
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RIN, Resource Information Network, catalog, database, blast, genomic sequence, gene prediction, orthology assignment, gene function, ortholog, roundworm, geneotype, phenotype, gene mapping, genomics, gene expression, transposon family, c elegans, wormmart, FASEB list, RRID Community Authority
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uses: InterMOD is used by: NIF Data Federation is used by: Resource Identification Portal is used by: PhenoGO is used by: Integrated Animals is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: OMICtools is listed by: re3data.org is listed by: InterMOD is listed by: Resource Information Network is affiliated with: InterMOD is related to: AmiGO is related to: GBrowse is related to: Textpresso is related to: Expression Patterns for C. elegans promoter GFP fusions is related to: C. elegans Gene Knockout Consortium is related to: NIH Data Sharing Repositories is related to: UniParc at the EBI is related to: UniParc is related to: Integrated Manually Extracted Annotation is related to: PhenoGO has parent organization: Cold Spring Harbor Laboratory has parent organization: Washington University in St. Louis; Missouri; USA has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom is parent organization of: C. elegans Development Vocabulary is parent organization of: C. elegans Gross Anatomy Vocabulary is parent organization of: C. elegans Phenotype Vocabulary is parent organization of: OpenWorm works with: A plasmid Editor is organization facet of: Alliance of Genome Resources
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NHGRI ; NIH Blueprint for Neuroscience Research ; MRC ; BBSRC ; NHGRI U41 HG002223; NIHGRI P41 HG02223 |
PMID:24194605 PMID:19910365 PMID:17991679 PMID:15608221 |
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nif-0000-00053, OMICS_01664, r3d100010424 |
http://www.wormbase.org/#01-23-6, https://doi.org/10.17616/R3089Z |
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SCR_003098 |
, WB, Worm Base, WB REF, WP |
2026-07-28 09:40:37 |
1825 |
OpenWorm
Resource Report
Resource Website
10+ mentions
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OpenWorm (RRID:SCR_014650)
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software application, simulation software, web application, software resource
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3D web browser that allows users to simulate and dissect virtual C. elegans. Users can explore the anatomy of a virtual, 3D worm by zooming in and out, rotating the model, and viewing the worm's different layers. NeuroML format and connector are used to enhance the simulation, and supporting programs and code are available for coders.
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simulation, model, web application, web browser, c elegans, nematode, worm, roundworm, open source, 3d, dissect, anatomy, bio.tools
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is listed by: Debian is listed by: bio.tools has parent organization: WormBase is hosted by: GitHub
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PMID:25404913 DOI:10.3389/fncom.2014.00137 |
Open source, Code is available on GitHub, Available on the App Store |
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SCR_014984, biotools:OpenWorm |
https://bio.tools/OpenWorm |
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SCR_014650 |
OpenWorm Browser, Open Worm |
2026-07-27 09:34:45 |
21 |
C. elegans Development Vocabulary
Resource Report
Resource Website
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C. elegans Development Vocabulary (RRID:SCR_006811)
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WB-LS
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controlled vocabulary, data or information resource, ontology
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A structured controlled vocabulary of the development of Caenorhabditis elegans.
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obo
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is listed by: BioPortal has parent organization: WormBase
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nlx_157346 |
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SCR_006811 |
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2026-07-28 09:41:43 |
0 |
C. elegans Gross Anatomy Vocabulary
Resource Report
Resource Website
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C. elegans Gross Anatomy Vocabulary (RRID:SCR_006835)
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WB-BT
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controlled vocabulary, data or information resource, ontology
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A structured controlled vocabulary of the anatomy of Caenorhabditis elegans.
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obo
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is listed by: BioPortal has parent organization: WormBase
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nlx_157347 |
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SCR_006835 |
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2026-07-28 09:41:40 |
0 |
C. elegans Phenotype Vocabulary
Resource Report
Resource Website
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C. elegans Phenotype Vocabulary (RRID:SCR_006924)
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WB-PHENOTYPE
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controlled vocabulary, data or information resource, ontology
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A structured controlled vocabulary of Caenorhabditis elegans phenotypes.
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obo
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is listed by: BioPortal has parent organization: WormBase
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nlx_157348 |
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SCR_006924 |
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2026-07-28 09:41:41 |
0 |
Cold Spring Harbor Laboratory
Resource Report
Resource Website
1000+ mentions
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Cold Spring Harbor Laboratory (RRID:SCR_008326)
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CSHL
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nonprofit organization
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Non profit, private research and education institution that performs molecular and genetic research used to generate methods for better diagnostics and treatments for cancer and neurological diseases. Research of cancer causing genes and their respective signaling pathways, mutations and structural variations of the human genome that could cause neurodevelopmental and neurodegenerative illnesses such as autism, schizophrenia, and Alzheimer's and Parkinson's diseases and also research in plant genetics and quantitative biology.
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institution, education, genetic, alzheimer's, autism, biological, biotechnology, cancer, diagnostic, dna, genome, molecular, biology, neurodegenerative, neurodevelopmental, neurological, schizophrenia, signaling, structure
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is affiliated with: CyVerse is related to: GenomeScope is parent organization of: RMAP is parent organization of: Cold Spring Harbor Protocols: Collected Resources - Behavioral Assays is parent organization of: Genes to Cognition Online is parent organization of: Gramene is parent organization of: Exonic Splicing Enhancer Finder is parent organization of: bioRxiv is parent organization of: Brain Architecture Project is parent organization of: SCPD - Saccharomyces cerevisiae promoter database is parent organization of: AtProbe is parent organization of: FASTX-Toolkit is parent organization of: Chronux is parent organization of: Learn about SMA website is parent organization of: Transcriptional Regulatory Element Database is parent organization of: CSHL - Hannon Lab is parent organization of: Zebra Finch Song Learning Consortium is parent organization of: SpliceTrap is parent organization of: ESEfinder 3.0 is parent organization of: DNA From The Beginning: AN Animated Primer on the Basics of DNA, Genes, and Heredity is parent organization of: 3D Brain is parent organization of: Alta-Cyclic is parent organization of: WormBase is parent organization of: Reactome is parent organization of: ScanImage is parent organization of: FASTX-Toolkit is parent organization of: Cold Spring Harbor Laboratory Microscopy Shared Resource Core Facility
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nif-0000-24690, grid.225279.9, ISNI: 0000 0004 0387 3667, Wikidata: Q609768 |
https://ror.org/02qz8b764 |
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SCR_008326 |
CSHL |
2026-07-25 12:06:51 |
3333 |
Wellcome Trust Sanger Institute; Hinxton; United Kingdom
Resource Report
Resource Website
500+ mentions
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Wellcome Trust Sanger Institute; Hinxton; United Kingdom (RRID:SCR_011784)
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WTSI, Sanger
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institution
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Non profit research organization for genome sequences to advance understanding of biology of humans and pathogens in order to improve human health globally. Provides data which can be translated for diagnostics, treatments or therapies including over 100 finished genomes, which can be downloaded. Data are publicly available on limited basis, and provided more extensively upon request.
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research, genome, sequence, human, health, project, global, data, treatment, therapy
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is listed by: re3data.org is affiliated with: Open Targets is related to: Clonalframe is related to: ClonalOrigin is related to: TraCeR is parent organization of: ILLUMINUS is parent organization of: ARNIE is parent organization of: Sequence Search and Alignment by Hashing Algorithm is parent organization of: Sequencing of Idd regions in the NOD mouse genome is parent organization of: CAROL is parent organization of: DINDEL is parent organization of: Wellcome Trust Case Control Consortium is parent organization of: OLORIN is parent organization of: Exomiser is parent organization of: COSMIC - Catalogue Of Somatic Mutations In Cancer is parent organization of: GeneDB is parent organization of: Breast Cancer Somatic Genetics Study is parent organization of: Artemis: Genome Browser and Annotation Tool is parent organization of: ACT: Artemis Comparison Tool is parent organization of: Alien hunter is parent organization of: Pfam is parent organization of: DNAPlotter is parent organization of: VAGrENT is parent organization of: SMALT is parent organization of: LookSeq is parent organization of: ZMP is parent organization of: Deciphering Developmental Disorders is parent organization of: Sanger Mouse Resources Portal is parent organization of: SpliceDB is parent organization of: DECIPHER is parent organization of: 1000 Genomes: A Deep Catalog of Human Genetic Variation is parent organization of: Genes to Cognition: Neuroscience Research Programme is parent organization of: MEROPS is parent organization of: Rfam is parent organization of: VEGA is parent organization of: Bacterial Genomes is parent organization of: Caenorhabditis Genome Sequencing Projects is parent organization of: D. rerio Blast Server is parent organization of: Fungi Sequencing Projects is parent organization of: PEER is parent organization of: Alfresco - FRont-End for Sequence COmparison is parent organization of: AutoCSA (Automatic Comparative Sequence Analysis) is parent organization of: AceDB is parent organization of: CnD is parent organization of: Genomics of Drug Sensitivity in Cancer is parent organization of: Zebrafish Genome Project is parent organization of: Tree families database is parent organization of: Ensembl is parent organization of: BamView is parent organization of: SVMerge is parent organization of: RetroSeq is parent organization of: Consensus CDS is parent organization of: WormBase is parent organization of: Belvu is parent organization of: Bio-tradis is parent organization of: Blixem is parent organization of: Dotter is parent organization of: Exonerate is parent organization of: Fastaq is parent organization of: Gubbins is parent organization of: CellPhoneDB is parent organization of: Ensembl Metazoa is parent organization of: Scmap is parent organization of: Scfind is parent organization of: Recognition of Errors in Assemblies using Paired Reads is parent organization of: SAMTOOLS is parent organization of: Cell Model Passports
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Wellcome Trust |
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ISNI: 0000 0004 0606 5382, nlx_91258, grid.10306.34, Wikidata: Q1142544 |
https://ror.org/05cy4wa09 |
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SCR_011784 |
Wellcome Trust Sanger Institute, Genome Research Limited, The Wellcome Sanger Institute, Sanger Institute, Wellcome Trust Sanger Institute Genome Research Limited |
2026-07-25 12:07:22 |
527 |
NIH Data Sharing Repositories
Resource Report
Resource Website
1+ mentions
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NIH Data Sharing Repositories (RRID:SCR_003551)
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NIH Data Sharing Repositories
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data or information resource, data set
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A listing of NIH supported data sharing repositories that make data accessible for reuse. Most accept submissions of appropriate data from NIH-funded investigators (and others), but some restrict data submission to only those researchers involved in a specific research network. Also included are resources that aggregate information about biomedical data and information sharing systems. The table can be sorted according by name and by NIH Institute or Center and may be searched using keywords so that you can find repositories more relevant to your data. Links are provided to information about submitting data to and accessing data from the listed repositories. Additional information about the repositories and points-of-contact for further information or inquiries can be found on the websites of the individual repositories.
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data repository
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lists: NIDDK Information Network (dkNET) lists: Nuclear Receptor Signaling Atlas lists: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB) lists: Eukaryotic Pathogen Database Resources lists: Immune Epitope Database and Analysis Resource (IEDB) lists: LONI Image and Data Archive lists: BEI Resource Repository lists: Nanomaterial Registry lists: Metabolomics Workbench lists: National Database for Clinical Trials related to Mental Illness lists: RDoCdb lists: Database of Interacting Proteins (DIP) lists: NIH MRI Study of Normal Brain Development lists: PubChem lists: 1000 Functional Connectomes Project lists: Parkinson's Progression Markers Initiative lists: Mouse Genome Informatics (MGI) lists: Federal Interagency Traumatic Brain Injury Research Informatics System lists: NIH Human Connectome Project lists: Biological General Repository for Interaction Datasets (BioGRID) lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) lists: Nanomaterial Registry is related to: NIH MRI Study of Normal Brain Development is related to: Eukaryotic Pathogen Database Resources is related to: Parkinson's Progression Markers Initiative is related to: Federal Interagency Traumatic Brain Injury Research Informatics System is related to: NIH Human Connectome Project is related to: National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS) is related to: Cancer Imaging Archive (TCIA) is related to: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) is related to: NIDDK Information Network (dkNET) is related to: UniProt is related to: GeneNetwork is related to: Zebrafish Information Network (ZFIN) is related to: WormBase is related to: Database of Interacting Proteins (DIP) is related to: iDASH is related to: PubChem is related to: CardioVascular Research Grid (CVRG) is related to: 1000 Functional Connectomes Project is related to: Mouse Genome Informatics (MGI) is related to: FlyBase is related to: PeptideAtlas is related to: Biological General Repository for Interaction Datasets (BioGRID) is related to: GRDR is related to: National Institute on Drug Abuse Center for Genetic Studies is related to: BEI Resource Repository has parent organization: National Library of Medicine
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NIH |
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nlx_157683 |
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SCR_003551 |
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2026-07-27 09:31:47 |
4 |
C. elegans Gene Knockout Consortium
Resource Report
Resource Website
10+ mentions
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C. elegans Gene Knockout Consortium (RRID:SCR_003000)
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C. elegans Gene Knockout Consortium
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organism supplier, biomaterial supply resource, material resource
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THIS RESOURCE IS NO LONGER IN SERVCE, documented September 2, 2016. The mission of the C. elegans Gene Knockout Consortium is to facilitate genetic research of this important model system through the production of deletion alleles at specified gene targets. We choose targets based on investigator requests. Strains produced by the consortium are freely available with no restrictions to any investigator. At one time, our capacity dictated that we restrict requests to five per lab. This restriction no longer holds. Investigators are encouraged especially to register requests for functionally related groups of genes. Consortium strains are distributed by the C. elegans Genetic Center (CGC). In most cases, when you use the Consortium web site to request an existing allele, your request is forwarded automatically to the CGC. However, if you indicate that an existing allele is not satisfactory for your research, (for whatever reason), you may request that we generate another allele for the same target. Any information generated by the Consortium is entered into the official C. elegans data repository, WormBase.
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gene, locus, knockout, genetic, research, model, allele, target, strain, deletion allele, gene target
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is related to: Caenorhabditis Genetics Center is related to: WormBase has parent organization: Oklahoma Medical Research Foundation
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THIS RESOURCE IS NO LONGER IN SERVICE |
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nif-0000-30230 |
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SCR_003000 |
C. elegans Gene Knockout Consortium |
2026-07-28 09:40:35 |
30 |
OMICtools
Resource Report
Resource Website
10+ mentions
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OMICtools (RRID:SCR_002250)
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OMICtools
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data or information resource, catalog, database
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THIS RESOURCE IS NO LONGER IN SERVICE. Documented Jul 19, 2024. Metadatabase manually curated that provides web accessible tools related to genomics, transcriptomics, proteomics and metabolomics. Used as informative directory for multi-omic data analysis.
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metadatabase, manually, curated, tool, genomic, transcriptomic, proteomic, metabolomic, data
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lists: ncdfFlow lists: BSmooth-align lists: 4Peaks lists: CSDeconv lists: Tablet lists: GenomicRanges lists: SNPSVM lists: ReadqPCR lists: SP-Designer lists: CorMut lists: ChIPmeta lists: FACS lists: metaSeq lists: Dissect lists: Fusion Analyser lists: FusionCatcher lists: GASV lists: GHOSTM lists: nFuse lists: PD5 lists: Patchwork lists: QuadGT lists: VariantAnnotation lists: ReQON lists: SnowsShoes-FTD lists: timecourse lists: SOAPfuse lists: SOAPfusion lists: pFind Studio: pLink lists: Spotfinder lists: AbMining ToolBox lists: SNAVI lists: MetAssign lists: JChemPaint lists: siRNArules lists: AutoPrime lists: RmiR.Hs.miRNA lists: MysiRNA-designer lists: TACOA lists: Treephyler lists: MedGen lists: D-Tailor lists: BioLemmatizer lists: AffyRNADegradation lists: Orphelia lists: ArrayExpress (R) lists: Parallel-META lists: CovalentDock Cloud lists: DOCK lists: exomeSuite lists: SPAdes lists: Sequence Read Format lists: FastQ Screen lists: GEOquery lists: Bovine Genome Database lists: GISTIC lists: DESeq lists: Postgwas lists: BLASTPLOT lists: miRanalyzer lists: Magnolya lists: GMATo lists: GemSIM lists: Grinder lists: Illuminate lists: RNAcontext lists: MIMOSA lists: F2DockClient lists: FlexX lists: Glide lists: GOLD lists: Molegro Virtual Docker lists: Sanjeevini lists: SODOCK lists: HEM lists: Surflex-Dock lists: Cascleave lists: MetaDE lists: Cell Death Proteomics Database lists: GPS-Calpain Cleavage Detector lists: GraBCas lists: c3net lists: Context Likelihood of Relatedness lists: GENIE3 lists: Inferelator lists: MODENT - A Tool For Reconstructing Gene Regulatory Networks lists: MRNet lists: UnSplicer lists: Duplicate reads removal lists: PEpiD lists: TAPIR: target prediction for plant microRNAs lists: iOMICS lists: Megraft lists: VARiD lists: Cistrome lists: PSGInfer lists: MochiView lists: RSEM lists: RNAmotifs lists: M(at)CBETH lists: MS-Spectre lists: Quant lists: RNASeqReadSimulator lists: iFad lists: GramCluster lists: GProX lists: PeptideProphet lists: CNTools lists: Lasergene's SeqMan Pro lists: ProteinProphet lists: OMSSAPercolator lists: Flicker lists: cn.FARMS lists: LIPAGE lists: DNASTAR: Lasergene Core Suite lists: Clonality lists: oneClickCGH lists: CGH Fusion lists: Screensaver lists: fqzcomp lists: ArrayPlex lists: MiRdup lists: MeQA lists: Methyl-Analyzer lists: Annotare lists: CpGassoc lists: Koadarray lists: RADtools lists: rtd lists: ABrowse lists: GPViz lists: cuteNMR lists: Jnomics lists: JMolDraw lists: CGAP-Align lists: ARACHNE lists: Kinannote lists: CLC Main Workbench lists: ParseCNV lists: TAPS lists: PyroHMMsnp lists: TransView lists: pvac lists: riboPicker lists: NucleoFinder lists: bzip2 lists: GENSENG lists: AS-Peak lists: is-rSNP lists: ILLUMINUS lists: QUALIFIER lists: FunctSNP lists: Micro-Analyzer lists: flowStats lists: flowPeaks lists: metaMA lists: rTANDEM lists: flowFlowJo lists: TargetCaller lists: PSCBS lists: iASeq lists: d2-tools lists: PEPPER lists: OLINgui lists: TNO-DECO lists: SigFuge lists: stsPlots lists: Sulfinator lists: Rdisop lists: pbcore lists: GeneExpressionSignature lists: sybil - Efficient Constrained Based Modelling in R lists: msbwt lists: MetaDrug lists: Reprever lists: POPBAM lists: SAMBLASTER lists: SpeedSeq lists: pyQPCR lists: RefFinder lists: PGS lists: miRprimer lists: iBMQ lists: NIMBL lists: TDARACNE lists: bamova lists: BAIT lists: ARNIE lists: fourSig lists: Mfuzz lists: MaryGold lists: TOPPAS lists: SPHINX lists: PhyloPythia lists: MATCHCLIP lists: mzMatch lists: Sequence Search and Alignment by Hashing Algorithm lists: ESPRIT lists: DySC lists: FPSAC lists: Scaffold builder lists: SNPiR lists: ACCUSA2 lists: MuTect lists: Pindel lists: rSeq lists: GERP lists: SiPhy lists: wANNOVAR lists: ViReMa lists: Smart Dictionary Lookup lists: VariantMaster lists: GeneWays lists: AdaptiveCrawler lists: NGS-Cleaner lists: flowQ lists: Database Enabled Code for Ideal Probe Hybridization Employing R lists: NGSmethPipe lists: Pyrocleaner lists: DecGPU lists: drFAST lists: MPscan lists: TAPyR lists: MutPred Splice lists: ContEst lists: Mini Analysis Guide for Microarrays lists: DDBJ Omics Archive lists: Chromas lists: OnEx - Ontology Evolution Explorer lists: BEBaC lists: FlipFlop lists: Phosphor Antibody Array Data Analysis lists: PhenoFam lists: forqs lists: GMcloser lists: GenomeWeb lists: Bycom lists: CorQ lists: NGS tools for the novice lists: Opera lists: SRMA lists: DeNovoGear lists: VarB lists: BAMseek lists: TriageTools lists: clipcrop lists: detecttd lists: FastUniq lists: GEUVADIS lists: TMAP lists: BISMA lists: FineSplice lists: RMAP lists: Sequencing Analysis Software lists: BLASR lists: GlycoWorkbench lists: jmzIdentML API lists: SciRoKo lists: HapCompass lists: JBrowse lists: DSRC lists: fastqz lists: GDC lists: GRS lists: PREFAB lists: BLASTP lists: Google Compute Engine lists: SplitSeek lists: ASC lists: NPEBseq lists: FUSIM lists: Geoffs Bio-Directories lists: Phred lists: MassGenomics lists: Illuminator lists: BAC lists: targetscan.Hs.eg.db lists: RmiR lists: MmPalateMiRNA lists: Starr lists: bsseq lists: Qvalue lists: ExomePeak lists: NextGenSeq(at)nature.com lists: AutoAssemblyD lists: CUDA-EC lists: rGADEM lists: qips lists: PICS lists: Jmosaics lists: SparseAssembler lists: BreakFusion lists: ParticleCall lists: DSGseq lists: R453Plus1Toolbox lists: SynView lists: ShortFuse lists: Cancer Gene Index lists: jmzML lists: CASVM lists: Birdseed lists: Reaper - Demultiplexing trimming and filtering sequencing data lists: GimmeMotifs lists: skewer lists: flowWorkspace lists: massiR lists: Transposon Insertion Finder lists: Shimmer lists: GenVision lists: DiMO lists: MetaPhyl lists: WiggleTools lists: EMI lists: SplicePlot lists: CrossMap lists: GraphIBD lists: rbsurv lists: Skylign lists: HMMvar lists: tbvar lists: STRViper lists: Breakway lists: Genometa lists: CATCHprofiles lists: VAAL lists: SLOPE lists: BreakSeq lists: Anchored Assembly lists: Bionimbus lists: ChIPMunk lists: RDPipeline lists: PeakAnalyzer lists: SomaticCall lists: Baa.pl lists: VirusHunter lists: seq2HLA lists: MUMmerGPU lists: GeneMeta lists: GenoMiner lists: GenoViewer lists: sim4cc lists: GenomicTools lists: Omixon Target HLA Typing lists: Omixon Target Data Analysis lists: PARalyzer lists: QualiMap lists: Lab7 lists: mlgt lists: BSSim lists: Golden Helix GenomeBrowse lists: HiPipe lists: MADAM lists: Microarray Data Analysis System lists: Automated Microarray Pipeline lists: MergeMaid lists: OmicsOffice for NGS SeqSolve lists: categoryCompare lists: metahdep lists: Plantagora lists: QUAST lists: TileQC lists: VectorFriends lists: vcflib lists: PHACCS lists: Sequedex lists: Genome Trax lists: VCFtools lists: NGSUtils lists: ChIP-seq lists: Tally lists: mapDamage lists: freeIbis lists: piCALL lists: ERGO lists: TALLYMER lists: KMC lists: DSK lists: Mutation Surveyor lists: BFCounter lists: snpStats: SnpMatrix and XSnpMatrix classes and methods lists: CNVtools lists: CGEN lists: RCASPAR lists: iterativeBMAsurv lists: multtest lists: globaltest lists: SABER lists: Local Ancestry in adMixed Populations lists: GemTools lists: MinimumDistance lists: ipPCA lists: ADMIXTURE lists: frappe lists: Mutascope lists: metabnorm lists: VegaMC lists: VanillaICE lists: SNPchip lists: SMAP lists: quantsmooth lists: mBPCR lists: ITALICS lists: GenoSet lists: exomeCopy lists: CGHregions lists: CGHbase lists: BlindCall lists: beadarraySNP lists: SSCprofiler lists: CGH-Explorer lists: GLAD lists: SNP and Variation Suite SNP Analysis lists: SNP and Variation Suite CNV Analysis lists: ProbRNA lists: methylMnM lists: methyAnalysis lists: les lists: ARRmNormalization lists: ChIPsim lists: Sherman lists: yaqcaffy lists: wateRmelon lists: sRAP lists: spotSegmentation lists: SNM lists: SNAGEE lists: Simpleaffy lists: qcmetrics lists: OLIN lists: MANOR lists: limmaGUI lists: ffpe lists: dyebias lists: DEXUS lists: BeadDataPackR lists: aroma.light lists: ArrayTools lists: beadarray lists: arrayQuality lists: arrayMvout lists: affyQCReport lists: affyPLM lists: affylmGUI lists: AffyExpress lists: waveTiling lists: KAnalyze lists: gprege lists: oneChannelGUI lists: CYCLE lists: LMGene lists: factDesign lists: pickgene lists: betr lists: NGSrich lists: SCAN.UPC lists: arrayQualityMetrics lists: CALIB lists: DEDS lists: Harshlight lists: MiChip lists: OCplus lists: bridge lists: FARMS lists: fRMA lists: genArise lists: lapmix lists: maCorrPlot lists: maSigPro lists: MACAT lists: maigesPack lists: MDQC lists: metaArray lists: nnNorm lists: plgem lists: PVCA lists: RAMA lists: stepNorm lists: virtualArray lists: LPE lists: DDBJ Sequence Read Archive lists: WegoLoc lists: Mugsy lists: Mspire-Simulator lists: CytoSPADE lists: vsn lists: ACME lists: GenGIS lists: CoGAPS lists: NTAP lists: ToppCluster lists: PyLOH lists: Nebula lists: Sequencher lists: flowFP lists: ChIPseeqer lists: CisGenome lists: CGHcall lists: rMAT lists: TileMap lists: Clustal Omega lists: BLASTN lists: SeqScape Software lists: BACContigEditor lists: Human Gene Mutation Database lists: AnimalTFDB lists: asSeq lists: Cuffdiff lists: BLASTX lists: SLqPCR lists: rSeqDiff lists: AffinDB lists: Enriched Domain Detector lists: A Classification of Mobile genetic Elements lists: PELICAN lists: nondetects lists: rlsim lists: Chilibot: Gene and Protein relationships from MEDLINE lists: unifiedWMWqPCR lists: HAPLOPAINTER lists: HOMOZYGOSITYMAPPER lists: QuasiSeq lists: sSeq lists: GERMLINE lists: MCMC.qpcr lists: CNVrd2 lists: TaLasso lists: pairedBayes lists: RNASeqBias lists: plateCore lists: PLINK lists: MACH 1.0 lists: PennSeq lists: FACTA+. lists: Prediction of Amyloid Structure Aggregation lists: TANGO lists: DNACLUST lists: InterMine lists: MSClust lists: ReCount - A multi-experiment resource of analysis-ready RNA-seq gene count datasets lists: RSVSim lists: TCC lists: SAMstrt lists: pRESTO lists: MEME Suite - Motif-based sequence analysis tools lists: PoissonSeq lists: CQN lists: GLiMMPS lists: TEMP lists: BEAGLE lists: SPP lists: BIRDSUITE lists: NASTIseq lists: BREAKDANCER lists: CAROL lists: COMPASS lists: CASAVA lists: flowClust lists: HSA lists: SPADE lists: AStalavista lists: Visual Molecular Dynamics lists: EXTREME lists: CYRILLIC lists: DINDEL lists: ASprofile lists: OrderedList lists: GenABEL lists: CCAT lists: Alt Event Finder lists: BroadPeak lists: SamSPECTRAL lists: THetA lists: TCW lists: GATK lists: Degust lists: flowUtils lists: DAVID lists: RchyOptimyx lists: StatAlign lists: Arabidopsis thaliana Protein Interactome Database lists: FGED lists: ExpressionPlot lists: S-MART lists: Pecan lists: SeqMonk lists: Ray lists: tbrowse lists: Bacteriome.org lists: Apollo lists: RAVEN lists: PEDIGRAPH lists: BAliBASE lists: TEQC lists: rSNPs MAPPER lists: rSNPBase lists: SNP Function Portal lists: flowType lists: SNPper lists: MADELINE lists: CanSNPer lists: ADaCGH2 lists: SGA lists: NormaCurve lists: GapMis lists: TRAMS lists: SNPMeta lists: SNPAAMapper lists: METAL lists: OLORIN lists: openADAM lists: SeqEM lists: SHARCGS lists: DMET-Analyzer lists: PEDHUNTER lists: AffyPipe lists: pSTIING lists: PTMcode lists: SHORTY lists: POLYMUTT lists: TissueNet - The Database of Human Tissue Protein-Protein Interactions lists: TRIP Database lists: SNVer lists: BISC lists: Primate Orthologous Exon Database lists: PurBayes lists: PyroHMMvar lists: flowViz lists: ChIPSeq Peak Finder lists: SpliceAid-F lists: Vennt lists: flowTrans lists: Spliceosome Database lists: cisRED: cis-regulatory element lists: ASPicDB lists: SAMTOOLS lists: HEXEvent lists: DBASS lists: FlyFactorSurvey lists: SNAP - SNP Annotation and Proxy Search lists: STIFDB lists: Cake lists: MPromDb lists: ProTISA lists: circlize lists: AmiGO lists: flowQB lists: Cinteny lists: RegPrecise lists: STRUCTURE lists: SVA lists: SYZYGY lists: TcoF lists: Matchprot lists: WebGeSTer DB lists: pfSNP lists: shinyTANDEM lists: CistromeMap lists: metaRNASeq lists: ZOOM lists: flowPlots lists: ImaGene lists: VAAST lists: ARACNE lists: FR-HIT lists: PROVEAN lists: flowPhyto lists: flowCore lists: flowMerge lists: RankAggreg lists: ConsensusPathDB lists: MAIA (Microarray Image Analysis) lists: CORUM lists: CoryneRegNet lists: miso-lims lists: COSMIC - Catalogue Of Somatic Mutations In Cancer lists: cpnDB: A Chaperonin Database lists: flowMap lists: rmeta lists: flowMeans lists: CTCFBSDB lists: spliceR lists: flowMatch lists: flowFit lists: DEMI lists: Binding MOAD lists: DBD: Transcription factor prediction database lists: CodonCodes TraceViewer lists: RelocaTE lists: MAGE lists: flowCyBar lists: Iterative Signature Algorithm lists: Variant Reporter Software lists: RepARK lists: PolyPhred lists: dbSNP lists: BEETL-fastq lists: DWGSIM lists: Ensembl lists: DBTBS lists: MIAME lists: MAQC lists: HaploClique lists: DBTSS: Database of Transcriptional Start Sites lists: DNA DataBank of Japan (DDBJ) lists: ISO lists: SBARS lists: Clinical and Laboratory Standards Institute lists: JGI Genome Portal lists: Cancer Genomics Consortium lists: BEAT lists: DOMINO: Domain peptide interactions lists: R Tutorial - An R Introduction to Statistics lists: R Tutorial lists: DOMINE: Database of Protein Interactions lists: GenomeSmasher lists: DOSY Toolbox lists: MUMA lists: Database of Rice Transcription Factors lists: VennDiagram lists: Quick-R lists: EcoCyc lists: Tree of Life lists: flowBeads lists: EDAS - EST-Derived Alternative Splicing Database lists: eggNOG lists: NRDR lists: YLoc lists: CAMERA - Collection of annotation related methods for mass spectrometry data lists: EID: Exon-Intron Database lists: WoLF PSORT lists: Entrez Gene lists: Mason lists: QualitySNPng lists: EPDnew lists: realSFS lists: pymzML lists: RUbioSeq lists: PBSIM lists: PennCNV lists: pIRS lists: PeptideShaker lists: ShotGun lists: Gibbs Motif Sampler lists: Zebrafish Information Network (ZFIN) lists: Wessim lists: BioStar lists: MBASED lists: discoSnp lists: RVD lists: SEEK lists: MethylAid lists: ExomeDepth lists: libmgf lists: Autophagy Database lists: T3DB lists: RopeBWT2 lists: e-Driver lists: sapFinder lists: PharmGKB lists: CTF lists: SuperTarget lists: DrugBank lists: PANDAseq lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: leeHom lists: Reflect lists: Mapix lists: Rainbow lists: CASBAH lists: TelSeq lists: Pathview lists: GLProbs lists: rBiopaxParser lists: DSS lists: GATE lists: NetPathMiner lists: NMR metabolomics database of Linkoping lists: GenBank lists: HINT lists: libCSAM lists: RNA Abundance Database lists: GeneCards lists: BINOCh lists: AliView lists: TherMos lists: ANDES lists: PacmonSTR lists: RMassBank lists: FisHiCal lists: Mutation Annotation and Genomic Interpretation lists: Circleator lists: IMEx - The International Molecular Exchange Consortium lists: Batch Oligo Selection Script lists: iontree lists: MicroVigene lists: Greengenes lists: Basic4Cseq lists: rDock lists: hot scan lists: International HapMap Project lists: BiGGR lists: mzR lists: PAPi lists: pNovo+ lists: COV2HTML lists: CODEHOP lists: CNVassoc lists: PRO lists: Hollywood lists: StreamingTrim lists: pLabel lists: HomoloGene lists: aCGH.Spline lists: pBuild lists: Time-series RNA-seq Analysis Package lists: CGHnormaliter lists: Type-III-Secretion-System related database lists: SMRT-Analysis lists: CPTRA lists: mtDB - Human Mitochondrial Genome Database lists: AltAnalyze - Alternative Splicing Analysis Tool lists: Chimera lists: IMG System lists: Babelomics lists: MRFSEQ lists: ms lims lists: ChIPMonk lists: Gel2DE lists: UCSF Spot lists: ProRata lists: R-pbutils lists: MITOMAP - A human mitochondrial genome database lists: NOISeq lists: Dpos lists: Gene Weaver lists: pFind lists: Canadian College of Medical Geneticists lists: BRAIN lists: Isopat lists: R-pbh5 lists: pbh5tools lists: SMRT View lists: JASPAR lists: enviPat lists: bwtool lists: MoSDi lists: tweeDEseq lists: DIALIGN lists: PacBioToCA lists: DiNuP lists: Gutentag lists: Parametric Time Warping lists: SurvComp lists: SASqPCR lists: enviPick lists: GeneFisher lists: Triplex lists: MPprimer lists: MIPE lists: MFEprimer lists: DnaSP lists: FAS-DPD lists: SURPI lists: MAPPER - Multi-genome Analysis of Positions and Patterns of Elements of Regulation lists: MachiBase lists: Primer3Plus lists: e-PCR lists: NeuroMab lists: In-Silico PCR lists: JETTA lists: MapViewer lists: Primer-BLAST lists: WormBase lists: eQtlBma lists: JuncBASE lists: MethDB lists: pairheatmap lists: MISO lists: HYDEN lists: mrsFAST lists: PredictNLS lists: mrCaNaVaR lists: NovelSeq lists: PlantLoc lists: Primer3 lists: FastSNP lists: Proteome Analyst Specialized Subcellular Localization Server lists: NYCE lists: GeneScissors lists: ngLOC lists: MultiLoc lists: GeneCruiser lists: MetaLocGramN lists: FastPCR lists: miRNAMap lists: HUPO Proteomics Standards Initiative lists: SaskPrimerFS lists: rDiff lists: Database of Interacting Proteins (DIP) lists: Solas lists: Pipeliner lists: iLoc-Animal lists: QDNAseq lists: ResponseNet lists: SynSysNet lists: XORRO lists: Stacks lists: SECISearch3 and Seblastian lists: SALT lists: HyperTree lists: Primer Designer lists: r3Cseq lists: Gene Set Enrichment Analysis lists: Piano lists: PHAST lists: NHGRI: Establishing a Central Resource of Data from Genome Sequencing Projects lists: NGSadmix lists: Gemi lists: Talking Glossary of Genetic Terms lists: PathGuide: the pathway resource list lists: SplicingCompass lists: RNAhybrid lists: LUMPY lists: Geospiza lists: SpliCQ lists: ORFprimer lists: JCVI Primer Designer lists: Assembly Based ReAligner lists: deFuse lists: Xenbase lists: PoPoolation2 lists: OmicCircos lists: Amplicon lists: PrimerSeq lists: Genedata Expressionist lists: biobambam lists: RCircos lists: ggbio lists: DAFGA lists: MIPgen lists: PicTar lists: BlockClust lists: PIRSF lists: miR-PREFeR lists: MouseNET lists: PlantProm DB lists: MAGI lists: PLANTTFDB lists: ALDEx2 lists: qBasePLUS lists: RefGenes lists: HTqPCR lists: BestKeeper lists: NanoStringNorm lists: NormFinder lists: NormqPCR lists: PolymiRTS lists: PPDB: Plant Promoter Database lists: ddCt lists: GEOSS lists: PReMod lists: EasyqpcR lists: NanoStriDE lists: GBSA lists: LaSSO lists: NAPPA lists: nSolver Analysis Software lists: MAGENTA lists: MetABEL lists: ProNIT lists: genomation lists: metagen lists: BMIQ lists: FadE lists: metaphor lists: SWAN lists: PROSITE lists: Parseq lists: qPrimerDepot lists: Bpipe lists: Nestly lists: Snakemake lists: SNAPE-pooled lists: NGSANE lists: jmzTab lists: JISTIC lists: Savant lists: MetaSKAT lists: Human Variome Project lists: PoPoolation lists: RefSeq lists: MultiPhen lists: RegulonDB lists: MF-GE lists: PheWAS R Package lists: EBSeq lists: MSMS lists: RAREMETAL lists: RevMan lists: GEPAT lists: Polyester lists: SET lists: J-Express lists: UEA sRNA toolkit lists: Osprey lists: RINS lists: PyroBayes lists: PEAR lists: JATAC lists: SeqExpress lists: Quantitative Enrichment of Sequence Tags lists: Pash 3.0 lists: Factorbook lists: FlyTF.org lists: My Cancer Genome lists: Pathosystems Resource Integration Center lists: MSG lists: InsertionMapper lists: PubMed Central lists: GeneCommittee lists: INMEX lists: TagDust lists: PASS-bis lists: HLASeq lists: FIDEA lists: EGAPP lists: DCTD lists: Hapmix lists: BamView lists: PerM lists: Mercury lists: CDP lists: CB-Commander lists: BSRD lists: DER Finder lists: Artemis: Genome Browser and Annotation Tool lists: PeaKDEck lists: PubChem lists: Babel lists: bcbio-nextgen lists: SIDER lists: EpiGRAPH lists: DRUT lists: Ancestrymap lists: VIROME lists: Vanator lists: FACIL lists: Velvet-SC lists: SNiPer-HD lists: Squeezambler lists: UniGene lists: SCPD - Saccharomyces cerevisiae promoter database lists: GASSST lists: SnoopCGH lists: Taverna lists: PASHA lists: miRDeepFinder lists: STAR lists: Spanki lists: VAMPS lists: Basic OligoNucleotide Design lists: Tree and reticulogram REConstruction lists: ACT: Artemis Comparison Tool lists: SPInDel lists: Kdetrees lists: tree editor lists: Genomedata lists: BioDiscovery Nexus Copy Number lists: TETRA lists: MetaCluster-TA lists: DELLY lists: QuickGO lists: TAIR lists: CompostBin lists: Nonpareil lists: BioPig lists: LMAT lists: AbundanceBin lists: TaxSOM lists: NuChart lists: ProViDE lists: UnifiedGenotyper lists: SOrt-ITEMS lists: RAIphy lists: Human DNA Polymerase Gamma Mutation Database lists: Pfam lists: Distributed String Mining Framework lists: Pplacer lists: deStruct lists: Phymm and PhymmBL lists: USeq lists: NucPosSimulator lists: NBC lists: SVMerge lists: MLTreeMap lists: SVseq lists: SEQanswers lists: PRISM - Pair Read Informed Split Mapper lists: miRNAKey lists: MG-RAST lists: Information Hyperlinked Over Proteins lists: PubMed lists: MetaPhyler lists: MARTA lists: NCBI BioSample lists: BioSample Database at EBI lists: DiScRIBinATE lists: VariationHunter lists: NCBI BLAST lists: IBIS: Inferred Biomolecular Interactions Server lists: NCBI Sequence Read Archive (SRA) lists: MetaPhlAn lists: Classifier for Metagenomic Sequences lists: MapAl lists: European Genome phenome Archive lists: TemplateFilter lists: Minia lists: MiTCR lists: M-pick lists: CARMA lists: SLIQ lists: DNAPlotter lists: AmphoraNet lists: UPARSE lists: SOPRA lists: ESPRIT-Tree lists: HPC-CLUST lists: mirWIP lists: SSPACE lists: GoMapMan lists: G-BLASTN lists: SINA lists: Bambus lists: AGORA lists: GRASS lists: MIP Scaffolder lists: Scarpa lists: MBCluster.Seq lists: cortex var lists: Flux Simulator lists: BEERS lists: SNPeffect lists: MMAPPR lists: Cloudbreak lists: comrad lists: qSNP lists: SomaticIndelDetector lists: SomaticSniper lists: aldex lists: UnoSeq lists: Traph lists: RNA-SeQC lists: PoPoolation TE lists: RetroSeq lists: T-lex lists: SLIDE lists: VFS lists: Project HOPE lists: PANTHER Evolutionary analysis of coding SNPs lists: rQuant lists: Naturejobs lists: jobs.ac.uk lists: ASOoViR lists: RNA-eXpress lists: MethPipe lists: AnnTools lists: AVIA lists: CandiSNPer lists: CHAoS lists: COVA lists: methylKit lists: dbNSFP lists: GESND lists: VAGrENT lists: Human Splicing Finder lists: NGS-SNP lists: Oncotator lists: PHAge Search Tool lists: SCAN lists: SeqAnt lists: SNPdat lists: ORMAN lists: FRCbam lists: SNPdbe lists: SnpEff lists: SNPnexus lists: SPOT - Biological prioritization after a SNP association study lists: VARIANT lists: ABSOLUTE lists: ExPANdS lists: HIVCD lists: PathSeq lists: READSCAN lists: VirusFinder lists: VirusSeq lists: PredictHaplo lists: QuRe lists: ShoRAH lists: V-Phaser 2 lists: NSMAP lists: FlowSim lists: SimRare lists: SAMtools/BCFtools lists: MiTie lists: GeneTalk lists: iReckon lists: Genomic Datasharing lists: IsoformEx lists: IQSeq lists: ERANGE lists: FusionMap lists: Bioinformatics(at)school lists: PhenoMan lists: Models of SHM Targeting and Substitution lists: AGE lists: Breakpointer lists: CLEVER Toolkit lists: Clippers lists: CREST lists: Indelocator lists: GASVPro lists: Hydra lists: inGAP lists: VelociMapper lists: PEMer lists: SPLITREAD lists: SpliceSeq lists: Scripture lists: Omicsoft Sequence Aligner lists: SOAPindel lists: G-Mo.R-Se lists: SEECER lists: RSeQC lists: SeqWare lists: CloVR lists: PolySearch lists: MiRPara lists: PIE the search lists: miRdSNP lists: Hmmer lists: MuGeX lists: SysCall lists: KGGSeq lists: MycoCosm lists: EBIMed lists: HighWire lists: Coremine Medical lists: Assembly Likelihood Estimator lists: CoPub lists: ABS filter lists: NCBO Annotator lists: CHANCE lists: phantompeakqualtools lists: CoIN lists: SwissRegulon lists: becas lists: GEM lists: Anne O'Tate lists: (at)Note lists: PeakSeq lists: FaBox lists: CoverageCalculator lists: Spliceman lists: Yabi lists: footprintDB lists: MolBioLib lists: Moa lists: PRISM (Stanford database) lists: Knime4Bio lists: Ergatis lists: bioKepler lists: Platypus lists: PING lists: Binding and Expression Target Analysis lists: BioExtract lists: Bio-Linux lists: NeuroLex lists: ChEA lists: ChIPBase lists: CistromeFinder lists: pyDNase lists: hmChIP lists: HOCOMOCO lists: PAZAR lists: TFinDIT lists: AtProbe lists: DATFAP lists: StSNP lists: SolexaQA lists: TOBFAC lists: MapNext lists: BSeQC lists: SKIPPY lists: SAMStat lists: QC-Chain lists: Bis-SNP lists: Bisulfighter lists: CpG MPs lists: CyMATE lists: GobyWeb lists: Kismeth lists: MethylExtract lists: MethylViewer lists: MLML lists: MSC lists: PRINSEQ lists: NGSQC lists: NGS QC Toolkit lists: NextClip lists: Geneious Microsatellite Plugin lists: DistMap lists: PRIMEGENS lists: VDJ lists: Bowtie lists: CASHX lists: CUSHAW lists: CUSHAW2-GPU lists: GNUMAP lists: GSNAP lists: Kraken lists: Maq lists: MOSAIK lists: mrFAST lists: NextGenMap lists: ngsTools lists: PASS lists: Jellyfish lists: TIGRFAMS lists: Segemehl lists: SeqMap lists: SHRiMP lists: WHAM lists: SMALT lists: Scalable Nucleotide Alignment Program lists: SOAP3 lists: SOAPaligner/soap2 lists: Stampy lists: TreQ lists: IdCheck lists: HTSeq lists: Hadoop-BAM lists: MACE lists: Fulcrum lists: FreClu lists: FLASH lists: FASTX-Toolkit lists: Hiclib lists: FastQC lists: cd-hit-454 lists: CGAT lists: ea-utils lists: Genetic Testing Registry lists: Ridom TraceEdit lists: HiCUP lists: TopoSNP lists: TM4 lists: WebArrayDB lists: Advanced Sequence Automated Pipeline lists: Unipro UGENE lists: SeqTrace lists: MethylomeDB lists: FinchTV lists: DNA Chromatogram Explorer lists: Chromaseq lists: OXBench lists: Sybil lists: cancergrid-tma lists: PathXL TMA lists: Slidepath lists: Stanford TMA Software lists: TMA Navigator lists: TMA-Combiner lists: TMAJ lists: X-Tile lists: Bismark lists: jMHC lists: VAGUE lists: Tractor db lists: SAMtools Text Alignment Viewer lists: snp-search lists: TRANSFAC lists: Systems Transcriptional Activity Reconstruction lists: SPOT lists: LookSeq lists: Staden Package lists: Maqview lists: NGSView lists: BS Seeker lists: WISECONDOR lists: MagicViewer lists: Bambino lists: Consed lists: DiProGB lists: BSMAP lists: netClass lists: BSmooth lists: DMRforPairs lists: SeqGSEA lists: CLIPZ lists: PePr lists: MutationAssessor lists: American College of Medical Genetics and Genomics lists: Biopieces lists: SNPsandGO lists: Unified Human Interactome lists: OLego lists: PIPE-CLIP lists: GoPubMed lists: SPLINTER lists: GraphProt lists: Cascade lists: PASSion lists: JEPETTO lists: dna-bison lists: aLFQ lists: BLESS lists: VirHostNet: Virus-Host Network lists: CAFE lists: VirusMINT lists: GNUMAP-BS lists: MetaQC lists: YuGene lists: h5vc lists: IQRray lists: Yeast Search for Transcriptional Regulators And Consensus Tracking lists: LAST lists: ScerTF lists: Tangram lists: ClinVar lists: estMOI lists: FCROS lists: WashU Epigenome Browser lists: deepSNV lists: OMPdb lists: Rosalind lists: pepStat lists: PANOGA lists: InterSpecies Analysing Application using Containers lists: GeneTrail lists: MEDIE lists: DBM-DB lists: SpliceDB lists: RUVSeq lists: Genomic Standards Consortium lists: Galaxy lists: VICUNA lists: Lists2Networks lists: PredictSNP lists: ADGO lists: KOBAS lists: GeneTerm Linker lists: Computational Genomics Analysis Tools lists: Antibody Registry lists: BHC lists: Wigwams lists: BETASEQ lists: PhyloBayes lists: MEGA-MD lists: CGARS lists: Magic lists: epigenomix lists: QCGWAS lists: AbsCN-seq lists: DupRecover lists: Socrates lists: CMGRN lists: SNPdryad lists: ALEA lists: MSIsensor lists: TSSer lists: IRanges lists: SILVA lists: kFM-index lists: Bioconductor lists: CHASM/SNV-Box lists: HTQC lists: GeneNetworkBuilder lists: Jalview lists: SV-M lists: Hereditary Hearing Loss Homepage lists: ATRHUNTER lists: seq crumbs lists: Google App Engine lists: COHCAP lists: MethylSeekR lists: SAAP-RRBS lists: targetHub lists: SRAdb lists: Picard lists: NGS-QC Generator lists: ART lists: HOMSTRAD - Homologous Structure Alignment Database lists: DECIPHER lists: GeneReviews lists: GigaScience lists: Leiden Open Variation Database lists: DGIdb lists: casper lists: htSeqTools lists: GWAMA lists: Orphanet lists: Ribosomal Database Project lists: DroID - Drosophila Interactions Database lists: BEDTools lists: PROGENY lists: APOLLOH lists: TIGAR lists: FLUX CAPACITOR lists: ChIPXpress lists: SpliceGrapher lists: waviCGH lists: Rice Genome Annotation lists: DMEAS lists: SoftSearch lists: SToRM lists: ALEXA-Seq lists: methVisual lists: DeconRNASeq lists: Samscope lists: AthaMap lists: SpliceTrap lists: Consensus CDS lists: GARM lists: Decombinator lists: FDM lists: fitGCP lists: EDASeq lists: Cscan lists: Next-gen Sequencing Scaffolding Tool lists: geNORM lists: GASiC lists: Ensembl Genomes lists: Qudaich lists: Nex-StoCT lists: Virmid lists: BIGpre lists: mubiomics lists: REDfly Regulatory Element Database for Drosophilia lists: EBCall lists: ENCODE lists: GBS barcode splitter lists: Sickle lists: JointSNVMix lists: RIPSeeker lists: ShortRead lists: TaxoAssignement lists: mutationSeq lists: QUASR lists: simhtsd lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation lists: GBrowse lists: seqbias lists: EagleView lists: HIA lists: qrqc lists: Genomes Unzipped lists: eXpress lists: ArtificialFastqGenerator lists: BarraCUDA lists: RazerS lists: Therapeutic Target Database lists: YeTFaSCo lists: PrimerBank lists: MORGAN lists: CROP lists: MeDUSA lists: Arabidopsis Gene Regulatory Information Server lists: SimSeq lists: MetMap lists: MIGen lists: eDMR lists: ProDom lists: BAMStats lists: CD-HIT-OTU lists: microRNA.org lists: Database of Genomic Variants lists: DeconSeq lists: Psort lists: Kinetic Data of Bio-molecular Interaction lists: PRODORIC lists: Database of Poplar Transcription Factors lists: BioRAT lists: Database of Arabidopsis Transcription Factors lists: RTPrimerDB- The Real-Time PCR and Probe Database lists: Pripper lists: COG lists: Yeast Intron Database lists: QDMR lists: Haldanes Sieve lists: Kevin's GATTACA World lists: Next-Gen Sequencing lists: Public Expression Profiling Resource lists: EpiExplorer lists: swDMR lists: SEURAT lists: EVORA lists: Taipan lists: GEB lists: YM500 lists: peakrots lists: Peakzilla lists: ECgene: Gene Modeling with Alternative Splicing lists: polyaPeak lists: RSEG lists: BigWig and BigBed lists: DriverDB lists: NECTAR lists: miRGator lists: BRIG lists: AmpliconNoise lists: HilbertVis lists: Variant Effect Predictor lists: GenoTan lists: Search Tool for Interactions of Chemicals lists: HighSSR lists: YHap lists: INVERTER lists: Annotation-Modules lists: lobSTR lists: BiQAnalyzer HT lists: UCHIME lists: ActiveDriver lists: MMSEQ lists: Anno-J lists: DADA lists: CanPredict lists: QIIME lists: OnlineCall lists: Seven Bridges Genomics lists: ChroMoS lists: Gene Array Analyzer lists: IsaCGH lists: RJaCGH lists: CAT lists: Ultrasome lists: DEGseq lists: World Health Organization lists: FoldX lists: VAMP lists: OMICS! OMICS! lists: SeqPig lists: Condel lists: DMI lists: DARIO lists: DrGaP lists: eXtasy lists: Tute Genomics lists: Exon Array Analyzer lists: Biodoop lists: OligoPicker lists: InVEx lists: Textpresso lists: YunBe lists: DWD lists: PASTA lists: isva lists: QPALMA lists: MuSiC lists: svd lists: QuasiRecomb lists: RUM lists: XPN lists: Sequgio lists: ExpressYourself lists: FGDP lists: DELIMINATE lists: GAAS lists: Gecko lists: DNAzip lists: CMAP lists: SeqSaw lists: GReEn lists: Gzip lists: MFCompress lists: NGC lists: Quip lists: SIMHAP lists: CPSS lists: RLZ lists: A sample size calculation method lists: iMir lists: isomiRex lists: ISRNA lists: SeqBuster lists: shortran lists: SpliceMap lists: Generic Exome Analysis Plan lists: SCALCE lists: mirTools lists: Subread lists: isomiRID lists: Supersplat lists: TrueSight lists: RNASEQR lists: MicroSNiPer lists: BitSeq lists: MSbind lists: CLIIQ lists: IsoEM lists: Omixon blog lists: RNA-Seq Blog lists: AllSeq lists: ABMapper lists: EULER-SR lists: ContextMap lists: Geneious lists: TargetMiner lists: SOAPsnp lists: Gossamer lists: CRAC lists: JR-Assembler lists: vipR lists: MaSuRCA lists: Meraculous lists: ABySS lists: MIRA lists: PE-Assembler lists: QSRA lists: ALLPATHS-LG lists: IMGT/V-QUEST lists: Celera assembler lists: CloudBrush lists: SOAPdenovo lists: SSAKE lists: SUTTA lists: Velvet lists: Atlas2 lists: ComB lists: CopySeq lists: CRISP lists: FamSeq lists: FreeBayes lists: GAMES lists: glfMultiples lists: MoDIL lists: MISA lists: SSRLocator lists: SSR pipeline lists: T-REKS lists: TRhist lists: AgileVariantMapper lists: HomSI lists: Align-GVGD lists: CUPSAT lists: LS-SNP/PDB lists: MAPP lists: mCSM lists: MutationTaster lists: MutPred lists: MutSig lists: nsSNPAnalyzer lists: Oncodrive-fm lists: PhD-SNP lists: PMut lists: PriVar lists: SAPRED lists: SNAP - Effects of Single Amino Acid Substitutions on Protein Function lists: SNPs3D lists: TransFIC lists: Diplotyper lists: EMINIM lists: HapCUT lists: HARSH lists: HapFABIA lists: Relate lists: Pedigree-Draw lists: Pedimap lists: Phylogeny Programs lists: NHLBI Grand Opportunity Exome Sequencing Project lists: PhenCode lists: SNP and indel Imputability lists: draw-sneakpeek lists: GensearchNGS lists: HugeSeq lists: MutFinder lists: RTG Variant lists: reseqtools lists: SIMPLEX lists: TREAT lists: WEP lists: breseq lists: SVDetect lists: CEQer lists: CONTRA lists: ExomeCNV lists: CNAnorm lists: CNAseg lists: CnD lists: CNValidator lists: CNVer lists: CNVnator lists: Control-FREEC lists: JointSLM lists: readDepth lists: rSW-seq lists: SegSeq lists: CoRAL - Classification of RNAs by Analysis of Length lists: miRDeep lists: miREval lists: miRExpress lists: miRspring lists: omiRas lists: ShortStack lists: tRNAscan-SE lists: RNAsnp lists: BCmicrO lists: C-mii lists: DIANA-LncBase lists: TarBase lists: HOCTAR lists: SICER lists: MapSplice lists: TargetScan lists: MicroCosm Targets lists: MicroMUMMIE lists: miRDB lists: miRNA lists: miRNAminer lists: miRTar lists: COPS lists: PITA lists: PMTED lists: dPeak lists: E-RANGE lists: FindPeaks lists: HMCan lists: HPeak lists: MICSA lists: MOSAiCS lists: NEXT-peak lists: PeakRanger lists: RRBSMAP lists: SIPeS lists: SISSRs lists: T-PIC lists: ZINBA lists: MAnorm lists: POLYPHEMUS lists: ChIPDiff Library Comparison lists: DBChIP lists: diffReps lists: DIME lists: AlignACE lists: Arpeggio lists: ChIPModule lists: CompleteMOTIFs lists: diChIPMunk lists: F-Seq lists: HOMER lists: kmer-SVM lists: LASAGNA-Search lists: oPOSSUM lists: Pscan-ChIP lists: RSAT peak-motifs lists: TFBSGroup lists: TFFM lists: NOrMAL lists: NPS lists: NSeq lists: Nu-OSCAR lists: NucDe lists: NucHunter lists: nucleR lists: LegumeTFDB lists: PlanTAPDB lists: PlantTFcat lists: PlnTFDB lists: SoyDB lists: TreeTFDB lists: mCarts lists: Piranha lists: MeRIP-PF lists: B-SOLANA lists: BatMeth lists: QUMA lists: MethMarker lists: Genomic HyperBrowser lists: BWA lists: CloudBurst lists: ERNE lists: PPSEQ lists: SEAL lists: aCGHtool lists: ADaCGH lists: Agilent CytoGenomics software lists: Agilent Genomic Workbench lists: Aroma.affymetrix lists: CGH Explorer lists: CGHPRO lists: CGHseg lists: CGHweb lists: CNA-HMMer lists: CNVPartition lists: CytoSure Interpret Software lists: FISH Oracle lists: GenoSNP lists: Genotyping Console Software lists: Genovar lists: Ginkgo lists: ArrayAnalysis.org lists: arrayMagic lists: ArrayPipe lists: ArrayQuest lists: Asterias lists: BASE lists: BRB-ArrayTools lists: Chipster lists: EMMA2 lists: XDrawChem lists: LCB-DWH lists: LIMMA lists: M-CHiPS lists: Mayday lists: CEAS lists: CoCo lists: NIA Array Analysis lists: Oncomine lists: RACE lists: SAM lists: miRCURY LNA microRNA Array Analysis Software lists: BioTile lists: FastDMA lists: IMA lists: Marmal-aid lists: MethLAB lists: RnBeads lists: RPPanalyzer lists: Array Designer lists: OligoArray lists: OligoFaktory lists: Picky lists: ProbeMaker lists: PROBEmer lists: ProDesign lists: ROSO lists: balony lists: GenePix Pro lists: BxArrays lists: GeneSpring GX lists: GenomeStudio lists: ComBat lists: Genopolis lists: MicroGen lists: MUSC DNA Microarray Database lists: TAD lists: UNC Microarray Database lists: ABySS-Explorer lists: DNPTrapper lists: Hawkeye lists: NURD lists: European Medicines Agency lists: PALMapper lists: Argo Genome Browser lists: CGView lists: Gaggle lists: Annmap lists: Genome Projector lists: Genomicus lists: IGB lists: Integrative Genomics Viewer lists: NCBI Genome Workbench lists: ngs.plot lists: UCSC Cancer Genomics Browser lists: UTGB Toolkit lists: Circos lists: G-compass lists: GenomeMatcher lists: GenomeRing lists: Gobe lists: GSV lists: MizBee lists: GNomEx lists: PipMaker and MultiPipMaker lists: SynBrowse lists: VISTA Browser lists: Infernal lists: Kalign lists: MAFFT lists: MUSCLE lists: ProbCons lists: PSAR-Align lists: openBIS lists: PiMS lists: SABmark lists: T-Coffee lists: FASTA lists: GPU-BLAST lists: PatMaN lists: TBLASTN lists: TBLASTX lists: WU-BLAST lists: Hammer lists: HiTEC lists: B-Fabric lists: BIKA lists: Galaxy LIMS lists: SBEAMS lists: discovering-cse lists: MT-Toolbox lists: AdapterRemoval lists: AlienTrimmer lists: Btrim lists: CANGS lists: ConDeTri lists: Quake lists: QuorUM lists: cutadapt lists: QTrim lists: sabre lists: Scythe lists: SeqtrimNEXT lists: TagCleaner lists: Trim Galore lists: Trimmomatic lists: Coral lists: DecGPU lists: ECHO lists: RACER lists: CLC Genomics Workbench lists: DNASTAR: Lasergene Genomics Suite lists: Genomatix Solutions lists: SNP and Variation Suite lists: JMP Genomics lists: NARWHAL lists: NextGENe lists: Partek Genomics Suite lists: SeqGene lists: SeqPipe lists: SHORE lists: Genboree Workbench lists: Ibis lists: naiveBayesCall lists: htseq-count lists: ABNER lists: BioCaster lists: LitInspector lists: RefMED lists: Eucalyptus lists: HP Public Cloud lists: Joyent lists: Rackspace lists: VirtualBox lists: BBSeq lists: VMware lists: Apache Hadoop lists: Windows Azure lists: BaseSpace lists: BioVLAB lists: CloudBioLinux lists: DNAnexus lists: Genestack lists: GenomeCloud lists: Globus Genomics lists: Scotty lists: EBARDenovo lists: IDBA-Tran lists: IsoInfer lists: KisSplice lists: FusionFinder lists: FusionHunter lists: Oases lists: Rnnotator lists: STM lists: TopHat-Fusion lists: RNAseqViewer lists: Eoulsan lists: FX lists: Guide lists: Oncofuse lists: Oqtans lists: PRADA lists: R-SAP lists: RobiNA lists: RseqFlow lists: GeneStitch lists: Genovo lists: IDBA-UD lists: Meta-IDBA lists: MetAMOS lists: MetaVelvet lists: Newbler lists: Phrap lists: Ray Meta lists: BLAT lists: Mega BLAST lists: UCLUST algorithm lists: eXPatGen lists: PhyloPythiaS lists: CAMERA lists: CoMet lists: METAREP lists: RAMMCAP lists: FGENESH lists: FragGeneScan lists: GeneMark lists: Glimmer lists: Glimmer-MG lists: HMMgene lists: MetaGeneAnnotator lists: MGC lists: Prodigal lists: Explicet lists: MetaSee lists: SynTView lists: MetaSim lists: NeSSM lists: MEGAN lists: MOCAT lists: pyGCluster lists: CancerResource lists: ARTIVA lists: mothur lists: QIIME lists: RTG Metagenomics lists: vegan lists: WebMGA lists: PTP lists: GeneTack lists: JiffyNet lists: ArrayMiner lists: Genomics of Drug Sensitivity in Cancer lists: SuperCYP lists: AutoDock Vina lists: CGDB lists: Potassium Channel Database lists: Orientations of Proteins in Membranes database lists: PDBTM lists: PREDDIMER lists: TMDET lists: BaCelLo lists: Cell-PLoc lists: INSDC lists: CELLO lists: ClubSub-P lists: CoBaltDB lists: Euk-mPLoc lists: HSLPred lists: iLoc-Plant lists: KnowPredsite lists: University of Pittsburgh, Health Sciences Library System lists: CaMPDB lists: TIGRESS lists: OMA Browser lists: orthAgogue lists: OrthoDB lists: QuartetS-DB lists: NGS Leaders lists: reddit lists: Stack Overflow lists: CoreGenomics lists: Bio-IT World lists: Bioinformatics.fr lists: Bioinformaticsweb lists: Getting Genetics Done lists: SIOMICS lists: HTS Mappers lists: Microarrays.org lists: Next Generation Sequencing WikiBook lists: 1DegreeBio lists: Antibody Portal lists: Antibody Validation Database lists: Biocompare Antibody Search Tool lists: AACC lists: APHA lists: APHL lists: FABIA lists: BiBench lists: ExpressionView lists: COALESCE lists: Gene ARMADA lists: GenoREAD lists: Bioinformatics Organization lists: International Society for Computational Biology lists: BioSpace lists: My Biomedical Informatics Blog lists: Bits and Bugs lists: Cancer Methylome System lists: DBCAT lists: Histone Systematic Mutation Database lists: Genome Alteration Print lists: methPrimerDB lists: TFClass lists: APPRIS lists: easyRNASeq lists: TSPM.R lists: ShrinkSeq lists: Syapse lists: VisSR lists: Standalone hamming lists: GenomeJack lists: digitagCT lists: CCAT (Combinatorial Code Analysis Tool) lists: GPU-Meta-Storms lists: AnalyzeReplication lists: DIYABC lists: FamAnn lists: GARNET lists: Algal Functional Annotation Tool lists: gsGator lists: Scramble lists: FiGS lists: PerlPrimer lists: CowCoDA lists: MZmine lists: OBI-Warp lists: CPFP lists: TOPP lists: swissPIT lists: Antilope lists: ICPL ESIQuant lists: MetExtract lists: MFPaQ lists: jmzReader lists: PRIDE Converter 2 lists: Pride-asap lists: thermo-msf-parser lists: SearchGUI lists: XTandem Parser lists: ProteoWizard lists: Maltcms lists: multiplierz lists: ADTEx lists: MatNMR lists: GSim lists: RASP lists: TE-locate lists: FIGG lists: Bpredictor lists: DIYA lists: MrBayes lists: Fastphylo lists: PhyloTreePruner lists: SNP ratio test lists: MOABS lists: CAMPways lists: compomics-utilities lists: DeNovoGUI lists: ProteoCloud lists: kruX lists: FingerID lists: proTRAC lists: SlideSort-BPR lists: SPINAL lists: HopeMap lists: SketchEl lists: GLARE lists: MCDL lists: NetMODE lists: Toxtree lists: Toxmatch lists: Viewmol lists: QuteMol lists: AHA lists: PBJelly lists: SAM format lists: PSimScan lists: NetCoffee lists: COBRApy lists: ORCA lists: Bionotate lists: Knowtator lists: MMAX2 lists: LAITOR lists: Connecting Overlapped Pair-End reads lists: iPapers lists: PyPedal lists: miRPlant lists: Simulate PCR lists: Scalpel lists: SAT-Assembler lists: CONDEX lists: ChiBE lists: diCal-IBD lists: MToolBox lists: ReviSTER lists: Allim lists: Ionwinze lists: VirVarSeq lists: GeneVenn lists: Pegasus-fus lists: GenoSIGHT lists: Cell motility lists: MSImageViewer lists: GlycReSoft lists: GlycanBuilder lists: ISDTool lists: cnvCapSeq lists: EC2KEGG lists: npstat lists: PoolHap lists: eALPS lists: LDx lists: PLEK lists: REDItools lists: NAIL lists: iMSAT lists: PrimerProspector lists: iceLogo lists: NESmapper lists: DHAC lists: AMS lists: Musite lists: PhosphoSiteAnalyzer lists: xMSanalyzer lists: MP-EST lists: HLAforest lists: LocalAli lists: A5-miseq lists: WaveCNV lists: Burrows-Wheeler transform lists: DNAcopy lists: CRLMM lists: motifRG lists: CNV Workshop lists: MotifLab lists: MMDiff lists: MiRaGE lists: OncoSNP-SEQ lists: LVSmiRNA lists: ExiMiR lists: OpenHelix Blog lists: EXCAVATOR-tool lists: RPA lists: CexoR lists: SWIPE lists: Isaac lists: CRAVAT lists: CMA lists: lumi lists: baySeq lists: edgeR lists: tRanslatome lists: SIFT lists: DNaseR lists: ANNOVAR lists: DEXSeq lists: ChIPpeakAnno lists: inSilicoMerging lists: minfi lists: Methylumi lists: miRNApath lists: affy lists: sva package lists: ArrayTrack lists: NGSmethDB lists: dmrFinder lists: Amazon Web Services lists: BEDOPS lists: rqubic lists: R-Bloggers.com lists: BicARE lists: iBBiG lists: eisa lists: Trowel lists: ChAMP lists: Acacia lists: cghMCR lists: GEN lists: Ngs backbone lists: Blue Collar Bioinformatics lists: Bioconductor mailing list lists: NCBI Assembly Archive Viewer lists: DiffBind lists: featureCounts lists: NarrowPeaks lists: GeneProf lists: DROMPA lists: CSAR lists: CSSP lists: TargetScore lists: CAZy lists: U.S. Food and Drug Administration lists: snapCGH lists: PhyloTree.org lists: MitoBreak lists: iChip lists: miRDeep* lists: CloudAligner lists: TurboNorm lists: InCroMAP lists: ProbeSelect lists: OligoWiz lists: GenomeView lists: SeqGenome Browser lists: GBrowse syn lists: MIG lists: Ringo lists: CRAM lists: Centers for Disease Control and Prevention lists: KungFq lists: SAMZIP lists: EDNA lists: MSAProbs lists: RLMM lists: OncoSNP lists: Onco-STS lists: ChIPOTle Peak Finder lists: charm lists: BiSeq lists: NxGview lists: MEDME lists: MEDIPS lists: MethylCoder lists: BSmapper lists: GRASSIUS lists: QcReads lists: SeqPrep lists: HECTOR lists: SHREC lists: hiCtools lists: BayesPeak lists: FishMicrosat lists: ChIPseqR lists: Rolexa lists: Swift lists: TraceTuner lists: seqMINER lists: miRecords lists: ComiR lists: MIReNA lists: MIREAP lists: miRDeep-P lists: RSEM lists: ncPRO-seq lists: AUTO-MUTE lists: vcf2MSAT lists: TopHat lists: cn.mops lists: SAMMate lists: FishingCNV lists: ABACUS lists: NGSpeAnalysis lists: Bamformatics lists: Genotype-Tissue Expression lists: IBDLD lists: HATS lists: SolSNP lists: RankProd lists: Trinity lists: Multivariate Analysis of Transcript Splicing lists: SNVMix lists: SNPTools lists: MendelScan lists: LoFreq lists: IMPUTE2 lists: GENE-counter lists: RNA CoMPASS lists: CoNAn-SNV lists: VCAKE lists: PRICE lists: LOCAS lists: Edena v3 lists: Contrail lists: AMOS lists: A5 lists: VDJFasta lists: Reptile lists: phyloseq lists: PhyloPhlAn lists: RDP FrameBot lists: QuantiSNP lists: Celera Genome Browser lists: AutoMap lists: mGOASVM lists: Genetic Genealogist lists: DSP lists: BRAT lists: cnvHiTSeq lists: Easyfig lists: ENA Sequence Search lists: bisReadMapper lists: palfinder lists: HiTC lists: IsoLasso lists: sam comp lists: CancerMutationAnalysis lists: muliAlignFree lists: CongrPE lists: CallSim lists: Tuxedo lists: SAPAS lists: PolyPhen-2 lists: GoGrid lists: Telescoper lists: RegRNA lists: dbCAN lists: HeurAA lists: CoNIFER lists: DiffSplice lists: MAP lists: DynamicProg lists: NGS Expert Blog lists: genCAT lists: SOCS lists: Monoclonal Antibody Index lists: BEADS lists: aCGH lists: RepeatSeq lists: CEM lists: Repitools lists: SeqSite lists: SmashCommunity lists: eProbalign lists: GPSeq lists: Antibody Links lists: SOAPsplice lists: CEDER lists: miRSeqNovel lists: PIA lists: SOAPdenovo-Trans lists: Wgsim lists: ChimeraSlayer lists: Mpstruct lists: RDXplorer lists: wapRNA lists: SeqTRACS lists: chimerascan lists: Human Transcriptome Database for Alternative Splicing lists: Crossbow lists: Cufflinks lists: HMMSplicer lists: MicroRazerS lists: psRNATarget lists: Trans-ABySS lists: NEUMA lists: Homologus lists: FusionSeq lists: Probalign lists: PLAN2L lists: DSAP lists: MEDEA lists: CNV-seq lists: GENSCAN lists: Alta-Cyclic lists: RosettaDock lists: MethyCancer lists: MED lists: PLACE- A Database of Plant Cis-acting Regulatory DNA Elements lists: Drosophila melanogaster Exon Database lists: RARTF lists: INCLUSive lists: ArrayOligoSelector lists: TreeView lists: dChip Software lists: Cluster lists: dChip Software lists: ScanAlyze lists: Avadis lists: GONUTS lists: PiNGO lists: KLEIO lists: ClinicalTrials.gov lists: Gene Ontology lists: Neuroscience Information Framework lists: ArrayExpress lists: SGD lists: SEQanswers Wiki lists: SMD lists: GOSlimViewer lists: OntoVisT lists: STRAP lists: GoFish lists: GOProfiler lists: FuncAssociate: The Gene Set Functionator lists: UCSC Genome Browser lists: UniPROBE lists: GREAT: Genomic Regions Enrichment of Annotations Tool lists: Whatizit lists: REViGO lists: Blast2GO lists: InterProScan lists: DiseaseMeth lists: caArray lists: NCBI Epigenomics lists: OMIM lists: Mouse Genome Informatics (MGI) lists: European Nucleotide Archive (ENA) lists: FlyBase lists: Ontology Lookup Service lists: MaizeGDB lists: Dictyostelium discoideum genome database lists: InterPro lists: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit lists: GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool lists: RamiGO lists: GeneCodis lists: IntAct lists: agriGO lists: GOblet lists: Gene Expression Omnibus lists: Biological General Repository for Interaction Datasets (BioGRID) lists: Ingenuity Pathway Analysis lists: Roadmap Epigenomics Project lists: PEER lists: KEGG lists: Antibodypedia lists: AcroMine lists: g:Profiler lists: HighWire Press lists: Biometric Research Branch: ArrayTools lists: R Project for Statistical Computing lists: Nu-OSCAR lists: Pedigree-Draw lists: Community Cyberinfrastructure for Advanced Marine Microbial Ecology Research and Analysis lists: ChIP-Atlas lists: ProLinks Database of Functional Linkages lists: Myrna lists: lilikoi lists: GOTrack lists: Ximmer lists: NAT/NCS2 Hound lists: VoxBlast lists: Splicing Express lists: RNA22 lists: miRWalk lists: miRmap lists: AbundantOTU+ lists: MutaGene lists: VecScreen lists: NMRProcFlow lists: Attie Lab Diabetes Database lists: Agilent MassHunter WorkStation - Qualitative Analysis for GC/MS lists: XYalign lists: fermi lists: metaPocket lists: DoG picker lists: TiltPicker lists: NeuroAnatomy Toolbox lists: MAxEntScan lists: MetaNeighbor lists: OmicsNet lists: Discovar assembler lists: Supernova assembler lists: Epik lists: Ligprep lists: PathwayMatcher lists: EMAN lists: Geno2MP lists: duphold lists: ConsensusClusterPlus lists: EpiFactors lists: fastp lists: NanoFilt lists: Heatmapper lists: Nuclear Hormone Receptor Scan lists: Metacell lists: OmicsSIMLA lists: ScaffMatch lists: MITE-Tracker lists: PCAGO lists: BinPacker lists: Bridger lists: RaceID lists: PRSice lists: cwl-metrics lists: mzStudio lists: OrthoFinder lists: SwiftOrtho lists: ClustVis lists: CWL-Airflow lists: CytExpert Software lists: Computational Suite for Bioinformaticians and Biologists lists: WTDBG lists: prank lists: MACS lists: NeuroAnatomy Toolbox lists: CentroidFold lists: pKiss lists: BIDS Validator lists: PILER lists: trimAl lists: NOVOPlasty lists: GeSeq lists: Diffusion Toolkit lists: PathwayNet lists: miRTarBase lists: CLC Genomics Workbench lists: PyNWB lists: FastProject lists: DiseaseMeth lists: WormAtlas lists: GeneATLAS lists: immuneXpresso lists: BioAssay Express lists: ChemRICH lists: TransDecoder lists: GADMA lists: Alien-hunter lists: ALTER lists: AMAP lists: Anfo lists: Aragorn lists: Arden lists: Ariba lists: Augustus lists: Avogadro lists: Axe lists: Baitfisher lists: BALLView lists: Bamtools lists: Barrnap lists: BEAST lists: BioPerl lists: bioSyntax lists: Bio-tradis lists: BOXSHADE 3.21 lists: Canu lists: Cassiopee lists: Cdbfasta lists: CD-HIT lists: Circlator lists: Clearcut lists: Clonalframe lists: ClonalOrigin lists: Clustal W2 lists: COILS: Prediction of Coiled Coil Regions in Proteins lists: Concavity lists: Cufflinks lists: cwltool lists: DIAMOND lists: DISULFIND lists: Database of Secondary Structure Assignments lists: Eigensoft lists: EMBOSS lists: ESTScan lists: FASTLINK lists: FastQC lists: FastTree lists: FigTree lists: Fsm-lite lists: Gamgi lists: Genome BioInformatics Research Lab - gff2ps lists: Ghemical lists: GIIRA lists: GROMACS lists: Gwyddion lists: Bioinformatics Toolkit lists: PyMOL lists: Biopython lists: PRESTO: Genetic Association Analysis Software lists: CummeRbund lists: ProtTest lists: Prokka lists: Computational Structural Biology Toolbox lists: LEfSe lists: jModelTest lists: khmer lists: Atac lists: LAMARC lists: FreeContact lists: libRoadRunner lists: TFBS lists: MicrobiomeUtilities lists: MINIMAC lists: MultiQC lists: Nanopolish lists: IgBLAST lists: PHYLIP lists: PhyML lists: Pilon lists: ADEGENET lists: phytools lists: R/QTL lists: RDKit: Open-Source Cheminformatics Software lists: RepeatMasker lists: SeaView lists: SEER lists: Seq-Gen lists: StringTie lists: THESIAS lists: Transterm lists: Vascular Modeling Toolkit lists: Aegean lists: andi lists: Bandage lists: Eagle lists: BioJava Project lists: Bio++ lists: BRAKER lists: Bustools lists: Centrifuge Classifier lists: ChromHMM lists: DeepNano lists: Ecopcr lists: Edtsurf lists: E-mem lists: Examl lists: Falcon lists: Fastaq lists: Fastml lists: Fastqtl lists: FSA lists: GARLI lists: Garlic lists: gdpc lists: GenomeTools lists: Gentle lists: Gff2aplot lists: gffread lists: GraPhlAn lists: Gubbins lists: Harvest-tools lists: HiLive lists: Hinge lists: HyPhy lists: Indelible lists: IQ TREE lists: Fastahack lists: Mash lists: MEGAHIT lists: Minimap2 lists: mosdepth lists: MUMmer lists: OptiType lists: Phyutility lists: Porechop lists: QIIME2 lists: Racon lists: Phangorn lists: pheatmap lists: Recognition of Errors in Assemblies using Paired Reads lists: RELION lists: Roary lists: Salmon lists: Scoary lists: University of Zurich SCRM - Cell-and Tissue Biobank lists: Seqtk lists: Short Read Sequence Typing for Bacterial Pathogens lists: Vmatch lists: ABACAS lists: AceDB lists: tRNAscan-SE lists: Antibody Resource Page is related to: COnsensus-DEgenerate Hybride Oligonucleotide Primers is related to: Classifier for Metagenomic Sequences is related to: Pedigree-Draw is related to: CAZy- Carbohydrate Active Enzyme is related to: PolyPhen: Polymorphism Phenotyping is related to: BioRAT is related to: dChip Software is related to: Rat Genome Database (RGD) is related to: Comparative Toxicogenomics Database (CTD) is related to: VISTA Enhancer Browser is related to: affy
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PMID:25024350 |
THIS RESOURCE IS NO LONGER IN SERVICE |
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nlx_155571, r3d100012426 |
https://doi.org/10.17616/R3PJ3N |
http://omictools.com/ |
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SCR_002250 |
genOMIC tools |
2026-07-28 09:40:23 |
34 |
NIDDK Information Network (dkNET)
Resource Report
Resource Website
10+ mentions
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NIDDK Information Network (dkNET) (RRID:SCR_001606)
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dkNET
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data or information resource, community building portal, database, portal
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The NIDDK Information Network (dkNET) is a community-based network to serve needs of basic and clinical investigators that includes large pools of data and research resources relevant to mission of National Institute of Diabetes and Digestive and Kidney Disease.
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dknet, data resource, diabetes, kidney, liver, disease, urology, hematology, digestive, nutrition, endocrine, obesity, metabolic
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uses: NIDDK Central Repository uses: Addgene uses: NIF Data Federation uses: Antibody Registry uses: Nuclear Receptor Signaling Atlas uses: GenitoUrinary Development Molecular Anatomy Project uses: Diabetic Complications Consortium uses: National Mouse Metabolic Phenotyping Centers uses: T1DBase uses: Beta Cell Biology Consortium uses: Grants.gov uses: dkNET Community Pilot Funding Opportunities uses: Integrated Grants uses: ClinicalTrials.gov uses: Integrated Animals uses: Intestinal Stem Cell Consortium recommends: Biological General Repository for Interaction Datasets (BioGRID) recommends: Cell Image Library (CIL) recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) recommends: NIDDK Central Repository recommends: Network Data Exchange (NDEx) recommends: PeptideAtlas recommends: International Mouse Phenotyping Consortium (IMPC) recommends: FlyBase recommends: Metabolomics Workbench recommends: Zebrafish Information Network (ZFIN) recommends: Mouse Genome Informatics (MGI) recommends: Database of Interacting Proteins (DIP) recommends: UniProt recommends: PhysioNet recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) recommends: ClinicalTrials.gov recommends: dbVar recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL) recommends: WormBase recommends: dbSNP recommends: GenBank recommends: DNA DataBank of Japan (DDBJ) recommends: Database of Genomic Variants Archive (DGVa) recommends: NCBI Sequence Read Archive (SRA) recommends: MGnify recommends: European Variation Archive (EVA) recommends: European Nucleotide Archive (ENA) recommends: Gene Expression Omnibus (GEO) recommends: NCBI Assembly Archive Viewer recommends: Protein Circular Dichroism Data Bank (PCDDB) recommends: miRBase recommends: Trace Archive recommends: UniProtKB recommends: Coherent X-Ray Imaging Data Bank (CXIDB) recommends: Electron Microscopy Data Bank at PDBe (MSD-EBI) recommends: Worldwide Protein Data Bank (wwPDB) recommends: Biological Magnetic Resonance Data Bank (BMRB) recommends: Crystallography Open Database (COD) recommends: PDBj - Protein Data Bank Japan recommends: Inorganic Crystal Structure Database (ICSD) recommends: Structural Biology Grid recommends: NCBI database of Genotypes and Phenotypes (dbGap) recommends: ArrayExpress recommends: EMDataResource.org recommends: Cambridge Crystallographic Data Centre (CCDC) recommends: PDBe - Protein Data Bank in Europe recommends: Japanese Genotype-phenotype Archive (JGA) recommends: PubChem BioAssay recommends: European Genome phenome Archive recommends: GenomeRNAi recommends: ProteomeXchange recommends: MetaboLights recommends: IntAct recommends: FLOWRepository recommends: Proteomics Identifications (PRIDE) recommends: Global Proteome Machine Database (GPM DB) recommends: Kinetic Models of Biological Systems (KiMoSys) recommends: ChEMBL recommends: Cancer Imaging Archive (TCIA) recommends: Image Data Resource (IDR) recommends: The Immunology Database and Analysis Portal (ImmPort) recommends: PubChem Substance recommends: NeuroMorpho.Org recommends: Cancer Nanotechnology Laboratory (caNanoLab) recommends: SICAS Medical Image Repository recommends: Mass spectrometry Interactive Virtual Environment (MassIVE) recommends: Dryad Digital Repository recommends: ZENODO recommends: NIH Figshare Archive recommends: STRENDA recommends: OpenNeuro recommends: Influenza Research Database (IRD) recommends: 1000 Functional Connectomes Project recommends: Mendeley Data recommends: Open Science Framework recommends: Dataverse Network Project recommends: NIMH Data Archive recommends: FigShare recommends: National Addiction and HIV Data Archive Program (NAHDAP) recommends: SPARC Portal recommends: Vivli is recommended by: National Library of Medicine lists: Diabetic Complications Consortium lists: Nephromine lists: LIPID Metabolites And Pathways Strategy lists: METLIN lists: NIDDK Inflammatory Bowel Disease Genetics Consortium lists: Body Mass Index Calculator lists: Symptom Score for Benign Prostatic Hyperplasia lists: Genetics of Kidneys in Diabetes lists: Type 1 Diabetes - Rapid Access to Intervention Development lists: TEDDY lists: Trans-Institute Angiogenesis Research Program lists: Consortium for Radiologic Imaging Studies of Polycystic Kidney Disease lists: Current Research Information System lists: Healthy People lists: Acute Liver Failure Study Group lists: Collaborative Islet Transplant Registry lists: Diabetes Prevention Type 1 lists: Epidemiology of Diabetes Interventions and Complications lists: NIH Division of Nutrition Research Coordination lists: Human Nutrition Research Information Management lists: Type 1 Diabetes Resource lists: National Diabetes Education Program lists: Pediatric Acute Liver Failure Study lists: Globin Gene Server lists: NIH Chronic Prostatitis Symptom Index lists: Sequencing of Idd regions in the NOD mouse genome lists: Look AHEAD lists: Teen-Longitudinal Assessment of Bariatric Surgery lists: Adult to Adult Living Donor Liver Transplantation Cohort Study lists: Behavior Enhances Drug Reduction of Incontinence lists: BARI 2D lists: Childhood Liver Disease Research and Education Network lists: Standardization of C-peptide measurements lists: CKID A Prospective Cohort Study of Kidney Disease in Children lists: Diabetes Prevention Program lists: Diabetes Prevention Program Outcomes Study lists: Irritable Bowel Syndrome Outcome Study lists: Folic Acid for Vascular Outcome Reduction in Transplantation lists: Type 1 Diabetes TrialNet lists: Diabetes Research in Children Network lists: Diabetic Retinopathy Clinical Research Network lists: Clinical Islet Transplantation Study lists: Nonalcoholic Steatohepatitis Clinical Research Network lists: Drug-Induced Liver Injury Network lists: Family Investigation of Nephropathy of Diabetes lists: Frequent Hemodialysis Network Daily Trial lists: HEALTHY study lists: SISTEr lists: Urinary Incontinence Treatment Network lists: TINSAL-T2D lists: TOMUS lists: Type 1 Diabetes Genetics Consortium lists: Center for Inherited Disease Research lists: Action to Control Cardiovascular Disease Risk in Diabetes Follow-up Study (ACCORDION) lists: Predicting Response to Standardized Pediatric Colitis Therapy (PROTECT) lists: Lifestyle Interventions for Expectant Moms (LIFE-Moms) lists: Hyperglycemia and Pregnancy Outcomes Follow-Up Study Consortium (HAPO-FUS) lists: Nephrotic Syndrome Study Network (NEPTUNE) lists: CKD Biomarkers Consortium lists: Porphyria Consortium lists: Vitamin D to Prevent Type 2 Diabetes (D2d) lists: Glycemic Reduction Approaches in Diabetes: A Comparative Effectiveness Study (GRADE) lists: Symptoms of Lower Urinary Tract Dysfunction Research Network (LURN) lists: Clinical Islet Transplantation Consortium (CITC) lists: Restoring Insulin Secretion Consortium (RISE) lists: Assessment Serial Evaluation and Subsequent Sequelae in Acute Kidney Injury (ASSESS-AKI) lists: Integrated Islet Distribution Program (IIDP) lists: Human Islet Research Network (HIRN) lists: Rare Kidney Stone Consortium (RKSC) lists: Evaluating Predictors and Interventions in Sphincter of Oddi Dysfunction lists: Efficacy and Mechanisms of Glutamine Dipeptide in the Surgical Intensive Care Unit lists: Intestinal Stem Cell Consortium lists: RiVuR lists: Gastroparesis Clinical Research Consortium lists: Urologic Diseases in America lists: United States Renal Data System lists: HALT PKD lists: Chronic Renal Insufficiency Cohort Study lists: Viral Resistance to Antiviral Therapy of Chronic Hepatitis C lists: Peginterferon and Ribavirin for Pediatric Patients with Chronic Hepatitis C lists: HALT-C Trial lists: TRIGR lists: Treatment Options for type 2 Diabetes in Adolescents and Youth lists: Study of Nutrition in Acute Pancreatitis lists: SEARCH for Diabetes in Youth lists: Organ Procurement and Transplantation Network lists: Nuclear Receptor Signaling Atlas lists: NIH Common Fund lists: Mutant Mouse Resource and Research Center lists: GenitoUrinary Development Molecular Anatomy Project lists: National Mouse Metabolic Phenotyping Centers lists: IPD-MHC- Major Histocompatibility Complex lists: High-dose Ursodiol Therapy of Primary Sclerosing Cholangitis lists: Hepatitis B Research Network lists: Functional Dyspepsia Treatment Trial lists: Cooperative Study Group for Autoimmune Disease Prevention lists: Clinical Outcomes Research Initiative lists: BISC lists: Beta Cell Biology Consortium lists: Autoimmunity Centers of Excellence lists: HemBase lists: Longitudinal Assessment of Bariatric Surgery lists: Minnesota Liver Tissue Cell Distribution System lists: Knockout Mouse Project lists: Immune Tolerance Network (ITN) lists: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) lists: ReBuilding a Kidney lists: GOA lists: NURSA Transcriptomine lists: STRING lists: Nuclear Receptor Cistrome lists: EuReGene lists: Embryo Images Normal and Abnormal Mammalian Development lists: Stem Cell Genome Anatomy Projects lists: Eurexpress lists: Gene Expression Database lists: ToppGene Suite lists: GATACA GUDMAP Gene Explorer lists: Knockout Mouse Project Repository lists: Cornell Heart Lung Blood Resource for Optogenetic Mouse Signaling (CHROMus) lists: International Mouse Phenotyping Consortium (IMPC) lists: Juvenile Diabetes Research Foundation lists: NIDDK Central Repository lists: Biospecimens/Biorepositories: Rare Disease-HUB (RD-HUB) lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) lists: T1DBase lists: NCI Specimen Resource Locator lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: caHUB lists: T1D Exchange lists: NCBI lists: LANDMark BioBanks lists: Diabetes Research Centers lists: Network for Pancreatic Organ Donors with Diabetes lists: Nutrition and Obesity Research Centers lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Antibody Validation and Vector Core lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Cell Culture and Engineering lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Clinical and Translational Core Resource lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center Mouse Models and Biobank lists: Baltimore Polycystic Kidney Disease (PKD) Research and Clinical Core Center lists: Fred Hutchinson Cancer Research Center Co-operative Center for Excellence in Hematology Bioinformatics Resource lists: Boston Area Diabetes Endocrinology Research Center Cell Biology and Morphology Core Facility lists: Boston Area Diabetes Endocrinology Research Center Metabolic Physiology and Energy Balance Core Facility lists: Boston Area Diabetes Endocrinology Research Center Molecular Biology lists: Boston Area Diabetes Endocrinology Research Center Pancreatic Islet lists: Boston Area Diabetes Endocrinology Research Center lists: 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the Study of Chronic Pelvic Pain lists: Secrepedia lists: MoTrPAC Data Hub lists: Human Cell Atlas lists: PANC-DB lists: Rare and Atypical Diabetes Network lists: Diabetes Control and Complications Trial lists: Diabetes Data and Hypothesis Hub lists: Common Metabolic Diseases Knowledge Portal lists: Type 1 Diabetes Knowledge Portal lists: Sleep Disorder Knowledge Portal lists: Cardiovascular Disease Knowledge Portal lists: Cerebrovascular Disease Knowledge Portal lists: Trans-Omics for Precision Medicine (TOPMed) Program lists: All of Us lists: AI-READI is listed by: NIH Data Sharing Repositories is listed by: NIDDK Research Resources is listed by: Collaborating for the Advancement of Interdisciplinary Research in Benign Urology is related to: MTOPS Prostate Samples Analysis Consortium is related to: Neuroscience Information Framework is related to: Diabetes Disease Portal is related to: Kidney and Urinary Pathway Knowledge Base is related to: dbMHC is related to: Islet Cell Resource Centers is related to: DGAP is related to: Nuclear Receptor Resource is related to: dkCOIN is related to: Human Biological Data Interchange is related to: National Gene Vector Biorepository is related to: Creatinine Standardization Program is related to: Glomerular Filtration Rate Calculators is related to: Congressionally Directed Medical Research Program is related to: National Kidney Disease Education Program is related to: Network of Minority Health Research Investigators is related to: National Endocrine and Metabolic Diseases Information Service is related to: Kidney and Urinary Pathway Ontology is related to: National Diabetes Information Clearinghouse is related to: Digestive Diseases Statistics for the United States is related to: Diabetes in America is related to: National Digestive Diseases Information Clearinghouse is related to: Diabetes Control and Complications Trial is related to: National Hematologic Diseases Information Service is related to: National Kidney and Urologic Diseases Information Clearinghouse is related to: Nonhuman Primate Transplantation Tolerance Cooperative Study Group is related to: Type 1 Diabetes Preclinical Testing Program is related to: Diabetes Autoantibody Standardization Program is related to: AASK Clinical Trial and Cohort Study is related to: Maryland Genetics of Interstitial Cystitis is related to: Frequent Hemodialysis Network Nocturnal Trial is related to: Mammalian Gene Collection is related to: Zebrafish Gene Collection is related to: Boston Area Community Health Survey is related to: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia is related to: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study is related to: Complementary and Alternative Medicine for Urological Symptoms is related to: Mouse Mutagenesis Center for Developmental Defects is related to: CARDS Database is related to: ACCORD is related to: Program to Reduce Incontinence by Diet and Exercise is related to: Renal Disease Portal is related to: Renin Angiotensin System Study is related to: NIH Data Sharing Repositories is related to: Kidney Development Database is related to: GenePaint Interactive Anatomy Atlas is related to: EMAGE Gene Expression Database is related to: Gene Expression Omnibus is related to: MGnify is related to: FAIR Data Informatics Laboratory is related to: Type 1 Diabetes Knowledge Portal is related to: Polycystic Kidney Disease Research Resource Consortium has parent organization: SciCrunch has parent organization: University of California at San Diego; California; USA
|
Digestive disease, Kidney disease, Diabetes, Metabolic disease, Endocrine disease, Obesity, Urologic disease, Type 1 diabetes, Type 2 diabetes |
NIDDK U24 DK097771 |
PMID:26393351 |
Free, Freely available |
|
nlx_153866, r3d100012845 |
http://scicrunch.org/dknet, https://doi.org/10.17616/R31NJMEL |
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SCR_001606 |
National Institute of Diabetes and Digestive and Kidney Disease Information Network, NIDDK Information Network, DKnet, NIDDKInformation Network |
2026-07-28 09:40:20 |
21 |
A plasmid Editor
Resource Report
Resource Website
50+ mentions
|
A plasmid Editor (RRID:SCR_014266)
|
ApE
|
software application, data analysis software, sequence analysis software, software resource, data processing software, standalone software
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Software tool for plasmid and sequence editing, annotating and drawing plasmid sequences. Used to view circular or linear maps of DNA sequences. Users can perform virtual digests whereby they select predefined DNA ladder, or specify their own, and visualize theoretical DNA fragments. Used to highlight restriction sites in editing window, accurately reflect Dam/Dcm blocking of enzyme sites, highlighting and drawing graphic maps using feature annotations from genbank and embl files, highlighting text using pre-defined and custom feature libraries, and directly BLASTing selected sequence at NCBI or Wormbase. Runs across Windows, OS X, and Linux/Unix.
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Plasmid, editing, sequence, annotating, drawing, restriction, site, enzyme, map, DNA, fragment
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works with: GenBank works with: NCBI works with: WormBase
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Free, Available for download, Freely available |
|
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https://jorgensen.biology.utah.edu/wayned/ape/ |
http://ape-a-plasmid-editor.wikispaces.com |
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SCR_014266 |
A plasmid Editor |
2026-07-28 09:43:23 |
93 |
Expression Patterns for C. elegans promoter GFP fusions
Resource Report
Resource Website
1+ mentions
|
Expression Patterns for C. elegans promoter GFP fusions (RRID:SCR_001619)
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data or information resource, database
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THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 12,2023. Database of expression patterns of C. elegans promoter::GFP constructs. A text description of the observed pattern is provided, indicating the stage(s) and tissue(s) in which GFP is expressed. Also available for some strains are the corresponding 2D and 3D images. Investigators may browse the entire list, search by gene name, tissue, stage, and pattern. Search results may be downloaded in .csv and .txt formats. All of the strains in the expression pattern database are displayed in the browse page. The records are organized by gene; information such as locus name, genomic location (WormBase), the presence of images and videos, and the actual expression pattern are shown in a tabular format.
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expression, gene, gene expression, caenorhabditis elegans, c. elegans, genomic, green fluorescent protein, location, locus, pattern, stage, strain, tissue
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is listed by: One Mind Biospecimen Bank Listing is related to: WormAtlas is related to: WormBase is related to: Caenorhabditis Genetics Center is related to: NEXTDB has parent organization: Albert Einstein College of Medicine; New York; USA
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Genome Canada ; Genome British Columbia |
PMID:17850180 |
THIS RESOURCE IS NO LONGER IN SERVICE |
|
nlx_153885, nif-0000-25220, SCR_008354 |
|
|
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SCR_001619 |
Caenorhabditis elegans Expression Patterns |
2026-07-28 09:40:20 |
4 |
Integrated Manually Extracted Annotation
Resource Report
Resource Website
|
Integrated Manually Extracted Annotation (RRID:SCR_008876)
|
Integrated MEA, Integrated LinkOut, Manually Extracted Annotation,
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data or information resource, database
|
A virtual database of annotations made by 50 database providers (April 2014) - and growing (see below), that map data to publication information. All NIF Data Federation sources can be part of this virtual database as long as they indicate the publications that correspond to data records. The format that NIF accepts is the PubMed Identifier, category or type of data that is being linked to, and a data record identifier. A subset of this data is passed to NCBI, as LinkOuts (links at the bottom of PubMed abstracts), however due to NCBI policies the full data records are not currently associated with PubMed records. Database providers can use this mechanism to link to other NCBI databases including gene and protein, however these are not included in the current data set at this time. (To view databases available for linking see, http://www.ncbi.nlm.nih.gov/books/NBK3807/#files.Databases_Available_for_Linking ) The categories that NIF uses have been standardized to the following types: * Resource: Registry * Resource: Software * Reagent: Plasmid * Reagent: Antibodies * Data: Clinical Trials * Data: Gene Expression * Data: Drugs * Data: Taxonomy * Data: Images * Data: Animal Model * Data: Microarray * Data: Brain connectivity * Data: Volumetric observation * Data: Value observation * Data: Activation Foci * Data: Neuronal properties * Data: Neuronal reconstruction * Data: Chemosensory receptor * Data: Electrophysiology * Data: Computational model * Data: Brain anatomy * Data: Gene annotation * Data: Disease annotation * Data: Cell Model * Data: Chemical * Data: Pathways For more information refer to Create a LinkOut file, http://neuinfo.org/nif_components/disco/interoperation.shtm Participating resources ( http://disco.neuinfo.org/webportal/discoLinkoutServiceSummary.do?id=4 ): * Addgene http://www.addgene.org/pgvec1 * Animal Imaging Database http://aidb.crbs.ucsd.edu * Antibody Registry http://www.neuinfo.org/products/antibodyregistry/ * Avian Brain Circuitry Database http://www.behav.org/abcd/abcd.php * BAMS Connectivity http://brancusi.usc.edu/ * Beta Cell Biology Consortium http://www.betacell.org/ * bioDBcore http://biodbcore.org/ * BioGRID http://thebiogrid.org/ * BioNumbers http://bionumbers.hms.harvard.edu/ * Brain Architecture Management System http://brancusi.usc.edu/bkms/ * Brede Database http://hendrix.imm.dtu.dk/services/jerne/brede/ * Cell Centered Database http://ccdb.ucsd.edu * CellML Model Repository http://www.cellml.org/models * CHEBI http://www.ebi.ac.uk/chebi/ * Clinical Trials Network (CTN) Data Share http://www.ctndatashare.org/ * Comparative Toxicogenomics Database http://ctdbase.org/ * Coriell Cell Repositories http://ccr.coriell.org/ * CRCNS - Collaborative Research in Computational Neuroscience - Data sharing http://crcns.org * Drug Related Gene Database https://confluence.crbs.ucsd.edu/display/NIF/DRG * DrugBank http://www.drugbank.ca/ * FLYBASE http://flybase.org/ * Gene Expression Omnibus http://www.ncbi.nlm.nih.gov/geo/ * Gene Ontology Tools http://www.geneontology.org/GO.tools.shtml * Gene Weaver http://www.GeneWeaver.org * GeneDB http://www.genedb.org/Homepage * Glomerular Activity Response Archive http://gara.bio.uci.edu * GO http://www.geneontology.org/ * Internet Brain Volume Database http://www.cma.mgh.harvard.edu/ibvd/ * ModelDB http://senselab.med.yale.edu/modeldb/ * Mouse Genome Informatics Transgenes ftp://ftp.informatics.jax.org/pub/reports/MGI_PhenotypicAllele.rpt * NCBI Taxonomy Browser http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html * NeuroMorpho.Org http://neuromorpho.org/neuroMorpho * NeuronDB http://senselab.med.yale.edu/neurondb * SciCrunch Registry http://neuinfo.org/nif/nifgwt.html?tab=registry * NIF Registry Automated Crawl Data http://lucene1.neuinfo.org/nif_resource/current/ * NITRC http://www.nitrc.org/ * Nuclear Receptor Signaling Atlas http://www.nursa.org * Olfactory Receptor DataBase http://senselab.med.yale.edu/ordb/ * OMIM http://omim.org * OpenfMRI http://openfmri.org * PeptideAtlas http://www.peptideatlas.org * RGD http://rgd.mcw.edu * SFARI Gene: AutDB https://gene.sfari.org/autdb/Welcome.do * SumsDB http://sumsdb.wustl.edu/sums/ * Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat http://www.temporal-lobe.com/ * The Cell: An Image Library http://www.cellimagelibrary.org/ * Visiome Platform http://platform.visiome.neuroinf.jp/ * WormBase http://www.wormbase.org * YPED http://medicine.yale.edu/keck/nida/yped.aspx * ZFIN http://zfin.org
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biomedical, bibliographic, linkout, literature
|
is used by: NIF Data Federation is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Gene Ontology Tools is related to: BAMS Connectivity is related to: Biological General Repository for Interaction Datasets (BioGRID) is related to: BioNumbers is related to: PubMed is related to: Brain Architecture Management System is related to: CellML Model Repository is related to: CHEBI is related to: Comparative Toxicogenomics Database (CTD) is related to: Coriell Cell Repositories is related to: Drug Related Gene Database is related to: DrugBank is related to: Gene Weaver is related to: Internet Brain Volume Database is related to: Cell Centered Database is related to: Brede Database is related to: ModelDB is related to: NeuronDB is related to: NeuroMorpho.Org is related to: Nuclear Receptor Signaling Atlas is related to: Cell Image Library (CIL) is related to: Animal Imaging Database is related to: Olfactory Receptor DataBase is related to: Glomerular Activity Response Archive is related to: CRCNS is related to: OMIM is related to: Rat Genome Database (RGD) is related to: Visiome Platform is related to: NIDA Data Share is related to: bioDBcore is related to: Addgene is related to: Antibody Registry is related to: Beta Cell Biology Consortium is related to: FlyBase is related to: SumsDB is related to: SciCrunch Registry is related to: Mouse Genome Informatics Transgenes is related to: NCBI Taxonomy is related to: OpenNeuro is related to: PeptideAtlas is related to: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat is related to: NIF Registry Automated Crawl Data is related to: AutDB is related to: Gene Expression Omnibus is related to: Gene Ontology is related to: Avian Brain Circuitry Database is related to: Zebrafish Information Network (ZFIN) is related to: GeneDB is related to: WormBase is related to: YPED has parent organization: Integrated
|
|
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PMID:20387131 PMID:18975149 |
Data are licensed by their respective owners. Use and distribution is subject to the Terms of Use by the original resource as well as the, Creative Commons Attribution License |
|
nlx_149407 |
|
http://neuinfo.org/nif/nifgwt.html?query=nlx_149407, https://neuinfo.org/mynif/search.php?q=*&t=indexable&list=cover&nif=nlx_149407-1 |
|
SCR_008876 |
Integrated Manually Extracted Annotation View, NIF Integrated LinkOut, NIF Integrated Manually Extracted Annotation, NIF LinkOut |
2026-07-28 09:42:24 |
0 |
Resource Identification Portal
Resource Report
Resource Website
10+ mentions
|
Resource Identification Portal (RRID:SCR_004098)
|
RII Portal
|
data or information resource, portal
|
Portal providing identifiers for Antibodies, Model Organisms, and Tools (software, databases, services) created in support of the Resource Identification Initiative, which aims to promote research resource identification, discovery, and reuse. The portal offers a central location for obtaining and exploring Research Resource Identifiers (RRIDs) - persistent and unique identifiers for referencing a research resource. A critical goal of the RII is the widespread adoption of RRIDs to cite resources in the biomedical literature and other places that reference their generation or use. RRIDs use established community identifiers where they exist, and are cross-referenced in their system where more than one identifier exists for a single resource.
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antibody, organism, service resource, software resource, database, resource, identifier, citation, biomedical, publication, research resource identifier, rrid, ASWG
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uses: Antibody Registry uses: SciCrunch Registry uses: Mouse Genome Informatics (MGI) uses: Zebrafish Information Network (ZFIN) uses: Rat Genome Database (RGD) uses: WormBase uses: FlyBase recommends: SciCrunch Registry recommends: Mouse Genome Informatics (MGI) recommends: Zebrafish Information Network (ZFIN) recommends: Rat Genome Database (RGD) is recommended by: Neuroscience Information Framework is recommended by: SciCrunch Registry is related to: NIF Data Federation has parent organization: SciCrunch
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NIGMS R24 GM144308 |
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The community can contribute to this resource |
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nlx_158572 |
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SCR_004098 |
Resource Identification Initiative Portal |
2026-07-28 09:40:54 |
19 |
Washington University in St. Louis; Missouri; USA
Resource Report
Resource Website
1+ mentions
|
Washington University in St. Louis; Missouri; USA (RRID:SCR_000343)
|
WUSTL, WashU
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university
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Private research university in Greater St. Louis with its main campus mostly in unincorporated St. Louis County, Missouri and Clayton, Missouri.
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missouri, undergraduate, postgraduate, graduate, university
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uses: Scizzle uses: Research Accelerator is affiliated with: Diabetes Research Centers is related to: Alzheimers Disease Genetics Consortium is related to: Clinical and Translational Science Awards Consortium is related to: Urinary Stone Disease Research Network is related to: Connectome Workbench is parent organization of: Washington University School of Medicine Knight Alzheimers Disease Research Center is parent organization of: DicomBrowser is parent organization of: Washington University School of Medicine Genome Technology Access Center Core Facility is parent organization of: DiMO is parent organization of: Washington University Neuromuscular Disease Center is parent organization of: Surface-Based Atlases is parent organization of: Neurologic AIDS Research Consortium is parent organization of: SomaticSniper is parent organization of: SPLINTER is parent organization of: DGIdb is parent organization of: Bayesian Analysis of Common NMR Problems is parent organization of: Genome Center BLAST Server is parent organization of: Washington University in St. Louis Neuroscience is parent organization of: Nematode.net is parent organization of: Human Gut Microbiome Initiative is parent organization of: Adaptive Poisson-Boltzmann Solver is parent organization of: Human Connectome Coordination Facility is parent organization of: MuSiC is parent organization of: Washington University School of Medicine in St. Louis; Missouri; USA is parent organization of: WUSTL Hybridoma Center is parent organization of: WUSTL Mouse Cardiovascular Phenotyping Core is parent organization of: WUSTL NNIN - Nano Research Facility is parent organization of: WUSTL Biology Department Imaging Facility is parent organization of: WUSTL Histology Core is parent organization of: Washington University in St. Louis School of Medicine Division of Biology and Biomedical Sciences is parent organization of: Collaborative Study on the Genetics of Alcoholism is parent organization of: Stroke Trials Registry is parent organization of: Neurology Image Library from The Internet Stroke Center is parent organization of: WormBase is parent organization of: ConnectomeDB is parent organization of: NIMH Repository and Genomics Resources is parent organization of: GLMdenoise: a fast, automated technique for denoising task-based fMRI data is parent organization of: Washington University Center for Diabetes Translation Research Administrative Core in Diabetes Research Core is parent organization of: Washington University Center for Diabetes Translation Research Dissemination and Implementation in Diabetes Research Core Facility is parent organization of: Washington University Center for Diabetes Translation Research Solutions to Diabetes in Black Americans Core is parent organization of: Washington University Center for Diabetes Translation Research Health Informatics in Diabetes Research Core is parent organization of: Washington University Center for Diabetes Translation Research is parent organization of: Washington University Center for Diabetes Translation Research Policy and Systems Science Analysis in Diabetes Research Core is parent organization of: Washington University Center for Diabetes Translation Research Health Communication and Health Literacy Core Facility is parent organization of: Washington University Center for Diabetes Translation Research Research Partnerships with American Indian/Alaskan Native Communities Core is parent organization of: Washington University School of Medicine Genome Technology Access Center Core Facility is parent organization of: Rodent Arena Tracker project is parent organization of: SnackClock is parent organization of: Feeding Experimentation Device project is parent organization of: Washington University in St. Louis Human Cells, Tissues, and Organoids Core Facility is parent organization of: Washington University School of Medicine Mass Spectrometry Technology Access Center Core Facility is parent organization of: Washington University in St. Louis Washington University Center for Cellular Imaging Core Facility is parent organization of: Washington University Digestive Diseases Research Core Center Biobank Core is parent organization of: Washington University School of Medicine Diabetes Research Center Translational Diagnostics Core is parent organization of: Washington University School of Medicine Diabetes Research Center Cell and Tissue Imaging Core is parent organization of: Washington University School of Medicine Diabetes Research Center Mass Spectrometry Core has organization facet: VarScan
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SCR_017964, Wikidata:Q777403, Crossref funder ID:100007268, ISNI:0000 0001 2355 7002, grid.4367.6, nlx_47548 |
https://ror.org/01yc7t268 |
|
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SCR_000343 |
Washington University |
2026-07-25 12:04:43 |
1 |
NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases
Resource Report
Resource Website
100+ mentions
|
NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases (RRID:SCR_012895)
|
NIDDK
|
government granting agency
|
Center with mission to conduct and support medical research and research training and to disseminate science-based information on diabetes and other endocrine and metabolic diseases. The NIDDK supports a wide range of medical research through grants to universities and other medical research institutions across the country.
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diabetes, metabolic disease, digestive, kidney, endocrine, medical research
|
recommends: Cell Image Library (CIL) recommends: Biological General Repository for Interaction Datasets (BioGRID) recommends: NIDDK Central Repository recommends: Accelerating Medicines Partnership Type 2 Diabetes Knowledge Portal (AMP-T2D) recommends: Metabolomics Workbench recommends: PeptideAtlas recommends: Network Data Exchange (NDEx) recommends: Mouse Genome Informatics (MGI) recommends: Zebrafish Information Network (ZFIN) recommends: FlyBase recommends: Database of Interacting Proteins (DIP) recommends: WormBase recommends: PhysioNet recommends: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) recommends: UniProt recommends: dbSNP recommends: DNA DataBank of Japan (DDBJ) recommends: European Nucleotide Archive (ENA) recommends: dbVar recommends: ClinicalTrials.gov recommends: European Variation Archive (EVA) recommends: MGnify recommends: Analysis, Visualization, and Informatics Lab-space (AnVIL) recommends: GenBank recommends: Gene Expression Omnibus (GEO) recommends: miRBase recommends: Database of Genomic Variants Archive (DGVa) recommends: Crystallography Open Database (COD) recommends: Coherent X-Ray Imaging Data Bank (CXIDB) recommends: Biological Magnetic Resonance Data Bank (BMRB) recommends: Worldwide Protein Data Bank (wwPDB) recommends: EMDataResource.org recommends: NCBI Assembly Archive Viewer recommends: Cambridge Crystallographic Data Centre (CCDC) recommends: Inorganic Crystal Structure Database (ICSD) recommends: Structural Biology Grid recommends: ArrayExpress recommends: GenomeRNAi recommends: NCBI database of Genotypes and Phenotypes (dbGap) recommends: Protein Circular Dichroism Data Bank (PCDDB) recommends: Electron Microscopy Data Bank at PDBe (MSD-EBI) recommends: PDBe - Protein Data Bank in Europe recommends: PubChem BioAssay recommends: Japanese Genotype-phenotype Archive (JGA) recommends: ProteomeXchange recommends: IntAct recommends: European Genome phenome Archive recommends: MetaboLights recommends: PubChem Substance recommends: The Immunology Database and Analysis Portal (ImmPort) recommends: STRENDA recommends: Kinetic Models of Biological Systems (KiMoSys) recommends: FLOWRepository recommends: Mass spectrometry Interactive Virtual Environment (MassIVE) recommends: Global Proteome Machine Database (GPM DB) recommends: Cancer Imaging Archive (TCIA) recommends: German Neuroinformatics Node (G-Node) recommends: 1000 Functional Connectomes Project recommends: ChEMBL recommends: Image Data Resource (IDR) recommends: SICAS Medical Image Repository recommends: ZENODO recommends: Dataverse Network Project recommends: NeuroMorpho.Org recommends: Mendeley Data recommends: NIMH Data Archive recommends: NIH Figshare Archive recommends: FigShare recommends: National Addiction and HIV Data Archive Program (NAHDAP) recommends: Dryad Digital Repository recommends: Open Science Framework recommends: OpenNeuro recommends: SPARC Portal lists: Mutant Mouse Resource and Research Center lists: NIDDK Research Resources is affiliated with: Cystic Fibrosis Research and Translation Centers is affiliated with: Nutrition and Obesity Research Centers is affiliated with: O'Brien Urology Centers is affiliated with: Hematology Centers is affiliated with: Polycystic Kidney Disease Research and Translation Centers is affiliated with: O'Brien Kidney Centers is affiliated with: Diabetes Research Centers is affiliated with: Digestive Disease Centers is affiliated with: Centers for Diabetes Translation Research is affiliated with: Pediatric Centers of Excellence in Nephrology is affiliated with: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study is related to: Bridging Interventional Development Gaps is related to: Polycystic Kidney Disease Research Resource Consortium has parent organization: National Institutes of Health is parent organization of: MTOPS Prostate Samples Analysis Consortium is parent organization of: Symptom Score for Benign Prostatic Hyperplasia is parent organization of: Type 1 Diabetes - Rapid Access to Intervention Development is parent organization of: National Diabetes Education Program is parent organization of: Family Investigation of Nephropathy of Diabetes is parent organization of: Frequent Hemodialysis Network Daily Trial is parent organization of: HemBase is parent organization of: NIDDK- National Institute of Diabetes and Digestive and Kidney Diseases Obesity Resources is parent organization of: dkCOIN is parent organization of: National Kidney Disease Education Program is parent organization of: Network of Minority Health Research Investigators is parent organization of: National Endocrine and Metabolic Diseases Information Service is parent organization of: National Diabetes Information Clearinghouse is parent organization of: National Digestive Diseases Information Clearinghouse is parent organization of: National Hematologic Diseases Information Service is parent organization of: National Kidney and Urologic Diseases Information Clearinghouse is parent organization of: Type 1 Diabetes Preclinical Testing Program is parent organization of: Frequent Hemodialysis Network Nocturnal Trial is parent organization of: Boston Area Community Health Survey is parent organization of: Minimally Invasive Surgical Therapies Treatment Consortium for Benign Prostatic Hyperplasia is parent organization of: Focal Segmental Glomerulosclerosis in Children and Young Adults Interventional Study
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Type 1 diabetes, Type 2 diabetes, Diabetes, Digestive disease, Kidney disease, Endocrine disease, Obesity, Blood disease, Liver disease, Urologic disease |
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nlx_inv_1005102 |
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SCR_012895 |
National Institute of Diabetes and Digestive and Kidney Diseases |
2026-07-25 12:07:40 |
140 |
Integrated Animals
Resource Report
Resource Website
|
Integrated Animals (RRID:SCR_001421)
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organism supplier, biomaterial supply resource, material resource
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Integrated Animals is a virtual database currently indexing available animal strains and mutants from: AGSC (Ambystoma), BCBC (mice), BDSC (flies), CWRU Cystic Fibrosis Mouse Models (mice), DGGR (flies), FlyBase (flies), IMSR (mice), MGI (mice), MMRRC (mice), NSRRC (pig), NXR (Xenopus), RGD (rats), Sperm Stem Cell Libraries for Biological Research (rats), Tetrahymena Stock Center (Tetrahymena), WormBase (worms), XGSC (Xiphophorus), ZFIN (zebrafish), and ZIRC (zebrafish).
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non human animal, mutant, database, integrated, nif, FASEB list
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uses: Mouse Genome Informatics (MGI) uses: Beta Cell Biology Consortium uses: Zebrafish Information Network (ZFIN) uses: International Mouse Strain Resource uses: Bloomington Drosophila Stock Center uses: Rat Genome Database (RGD) uses: Zebrafish International Resource Center uses: Ambystoma Genetic Stock Center uses: Kyoto Stock Center uses: FlyBase uses: Mutant Mouse Resource and Research Center uses: National Swine Resource and Research Center uses: National Xenopus Resource uses: CWRU In Vivo Animal Facilities uses: Sperm Stem Cell Libraries for Biological Research uses: Tetrahymena Stock Center uses: WormBase uses: Xiphophorus Genetic Stock Center is used by: NIF Data Federation is used by: NIDDK Information Network (dkNET) has parent organization: Integrated
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Free, Freely Available |
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nif-0000-08137 |
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https://legacy.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_154697-1 http://neuinfo.org/nif/nifgwt.html?query=nif-0000-08137, https://www.neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nif-0000-08137-1 |
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SCR_001421 |
NIF Animals, NIF Integrated Animals, Integrated Animal |
2026-07-28 09:40:15 |
0 |
AmiGO
Resource Report
Resource Website
1000+ mentions
|
AmiGO (RRID:SCR_002143)
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AmiGO
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service resource, data or information resource, data analysis service, database, production service resource, analysis service resource
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Web tool to search, sort, analyze, visualize and download data of interest. Along with providing details of the ontologies, gene products and annotations, features a BLAST search, Term Enrichment and GO Slimmer tools, the GO Online SQL Environment and a user help guide.Used at the Gene Ontology (GO) website to access the data provided by the GO Consortium. Developed and maintained by the GO Consortium.
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search, sort, analyze, visualize, data, ontology, gene, annotation, FASEB list
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uses: GOlr is used by: NIF Data Federation is listed by: OMICtools is listed by: Gene Ontology Tools is related to: ASAP is related to: Candida Genome Database is related to: Berkeley Bioinformatics Open-Source Projects is related to: ECO is related to: Zebrafish Information Network (ZFIN) is related to: Gramene is related to: WormBase is related to: NCBI Protein Database is related to: UniProtKB is related to: GeneDB Lmajor is related to: TAIR is related to: SGD is related to: GeneDB Tbrucei is related to: VMD is related to: JCVI CMR is related to: go-db-perl is related to: Mouse Genome Informatics (MGI) is related to: NCBI is related to: FlyBase is related to: GeneDB Pfalciparum is related to: PomBase is related to: Pseudomonas Genome Database is related to: Dictyostelium discoideum genome database is related to: Plant Ontology is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is related to: MeGO is related to: ASPGD is related to: EcoCyc is related to: Reactome is related to: SGN is related to: GO-Module is related to: Songbird Brain Transcriptome Database is related to: Rat Genome Database (RGD) is related to: RamiGO has parent organization: Gene Ontology
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NHGRI P41 HG002273 |
PMID:19033274 |
Free, Available for download, Freely available |
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nif-0000-20935, OMICS_02266 |
http://sourceforge.net/projects/geneontology/ |
|
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SCR_002143 |
GO Consortium, AmiGO, AmiGO 2, AmiGene Ontology, Gene Ontology Database, Gene Ontology Consortium, GO Database, The Gene Ontology Consortium |
2026-07-28 09:40:21 |
1242 |
re3data.org
Resource Report
Resource Website
50+ mentions
|
re3data.org (RRID:SCR_006782)
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re3data.org
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registry, data or information resource, database
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Global registry of research data repositories from all academic disciplines that allows the easy identification of appropriate research data repositories, both for data producers and users. Information icons display principal attributes of a repository that can be used for multi-faceted searches. Repository operators can suggest their infrastructures to be listed via a simple application form. A repository is indexed when the minimum requirements are met, i.e. mode of access to the data and repository, as well as the terms of use.
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vocabulary, registry, metadata standard, data sharing, FASEB list
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lists: Academic Seismic Portal at UTIG lists: National Addiction and HIV Data Archive Program (NAHDAP) lists: Alaska Climate Research Center lists: MINT lists: Internet Archive lists: MatrixDB lists: Animal QTLdb lists: MPIDB lists: BeetleBase lists: Conserved Domain Database lists: NeuroMorpho.Org lists: Marine Geoscience Data System lists: Cell Centered Database lists: dbMHC lists: Human Mortality Database lists: UniProt lists: Ligand-Gated Ion Channel Database lists: EcoGene lists: NCBI Genome lists: ESTHER lists: Genomes Online Database lists: Gramene lists: American FactFinder lists: Human Proteinpedia lists: IMGT/HLA lists: Influenza Virus Resource lists: DOE Joint Genome Institute lists: MetaCrop lists: ISPS Data Archive lists: MorphBank lists: miRBase lists: Inter-university Consortium for Political and Social Research (ICPSR) lists: Mouse Phenome Database (MPD) lists: MorphoBank lists: dbVar lists: Open Science Framework lists: TalkBank lists: Nucleic Acid Database lists: NCBI Taxonomy lists: NCBI Protein Database lists: PHI-base lists: Alberta Geological Survey lists: Protein Clusters lists: Reactome lists: Cell Image Library (CIL) lists: eyeMoviePedia lists: ALLBUS - German General Social Survey lists: TPA lists: Agency for Healthcare Research and Quality lists: Alaska Satellite Facility lists: Current German Weather Stations lists: NCBI Structure lists: BOLD lists: PDBe - Protein Data Bank in Europe lists: FishBase lists: Nucleotide database lists: NCBI BioSystems Database lists: SGD lists: Data.gov lists: RHEA lists: European Bioinformatics Institute lists: NCBI Probe lists: NCBI Nucleotide lists: Database of Genomic Variants Archive (DGVa) lists: NCBI Popset lists: Whole Brain Atlas lists: EMAGE Gene Expression Database lists: Limited Access Datasets From NIMH Clinical Trials lists: Tree of Life Web Project lists: TreeBASE lists: UCSC Genome Browser lists: UniPROBE lists: Crystallography Open Database (COD) lists: National Archive of Computerized Data on Aging (NACDA) lists: EOL - Encyclopedia of Life lists: VectorBase lists: caArray lists: NCBI Epigenomics lists: GWAS Central lists: QTL Archive lists: Proteome Commons lists: XNAT Central lists: 4TU.Datacentrum lists: Amazon Web Services Public Data Sets lists: ChemSpider lists: DataStaR lists: Rat Genome Database (RGD) lists: Atlas of Living Australia lists: Electron Microscopy Data Bank at PDBe (MSD-EBI) lists: Phytozome lists: FlyBase lists: MaizeGDB lists: Tuberculosis Database lists: InterPro lists: UNAVCO lists: The Human Protein Atlas lists: InnateDB lists: UniSTS lists: Launchpad lists: Surveillance Epidemiology and End Results lists: FAOSTAT lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database lists: HIstome: The Histone Infobase lists: HPRD - Human Protein Reference Database lists: Biological General Repository for Interaction Datasets (BioGRID) lists: INFEVERS lists: Reciprocal Net lists: Africa Centre for Health and Population Studies lists: BeeBase lists: Biodiversity Heritage Library lists: Databrary lists: ACADIS Gateway lists: ACEpepDB lists: AIMS Data Centre lists: ALADDIN lists: ASTER lists: Access to Archival Databases lists: AidData lists: Alaska Ocean Observing System lists: J. Craig Venter Institute lists: Wellcome Trust Sanger Institute; Hinxton; United Kingdom lists: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) lists: myExperiment lists: BioModels lists: Addgene lists: Antarctic and Southern Ocean Data Portal lists: OpenTopography lists: National Snow and Ice Data Center lists: Biological Magnetic Resonance Data Bank (BMRB) lists: dbSNP lists: Ensembl lists: DNA DataBank of Japan (DDBJ) lists: Entrez Gene lists: Zebrafish Information Network (ZFIN) lists: GitHub lists: DrugBank lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: Gene Expression Nervous System Atlas lists: SumsDB lists: GenBank lists: GermOnline lists: HGNC lists: Greengenes lists: Neuroscience Information Framework lists: HomoloGene lists: ArrayExpress lists: JASPAR lists: WormBase lists: Database of Interacting Proteins (DIP) lists: EMDataResource.org lists: ResearchCompendia lists: Proteomics Identifications (PRIDE) lists: RefSeq lists: FAIRsharing lists: PubChem lists: FigShare lists: UniGene lists: NIMH Data Archive lists: TAIR lists: NCBI BioProject lists: SMD lists: OpenNeuro lists: SoyBase lists: Beta Cell Biology Consortium lists: Biomedical Informatics Research Network lists: Dryad Digital Repository lists: Atlantic Canada Conservation Data Centre lists: Agri-environmental Research Data Repository lists: Australian Antarctic Data Centre lists: Antibody Registry lists: Mouse Genome Informatics (MGI) lists: European Nucleotide Archive (ENA) lists: NIDDK Central Repository lists: GigaScience lists: PeptideAtlas lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation lists: IntAct lists: fMRI Data Center lists: Gene Expression Omnibus lists: Data and Specimen Hub (NICHD DASH) lists: NIDA Data Share lists: The NINDS Human Cell and Data Repository (NHCDR) lists: Microphysiology Systems Database lists: Dataverse Network Project lists: Mendeley lists: Vivli lists: Metabolomics Workbench lists: Qualitative Data Repository lists: Protocols.io lists: ZENODO lists: STRENDA lists: Code Ocean lists: Brain Image Library lists: German Collection of Microorganisms and Cell Cultures lists: INPTDAT lists: DataONE lists: GBIF - Global Biodiversity Information Facility lists: Lamont-Doherty Core Repository lists: CaltechDATA lists: Synapse lists: Incorporated Research Institutions for Seismology lists: Cancer Imaging Archive (TCIA) lists: Mendeley Data lists: UK Data Archive lists: GigaDB lists: PhysioNet lists: Project Data Sphere lists: Influenza Research Database (IRD) lists: Simtk.org lists: ResearchGate lists: Virus Pathogen Resource (ViPR) lists: Cambridge Structural Data Base lists: 4TU.ResearchData lists: Aperta Turkey Open Archive lists: Polar Data Catalogue lists: Arch lists: Australian Data Archive lists: Australian Ocean Data Network lists: Barbara A. Mikulski Archive for Space Telescopes lists: Aston Data Explorer lists: Birkbeck Research Data lists: B2SHARE Eudat lists: BioHeritage National Science Challenge Data Repository lists: Bolin Centre Database lists: Brown Digital Repository is listed by: FORCE11 is related to: U.S. Census Bureau is related to: Rat Genome Database (RGD) is related to: ResearchCompendia has parent organization: Humboldt University of Berlin; Berlin; Germany has parent organization: Karlsruhe Institute of Technology; Karlsruhe; Germany
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The community can contribute to this resource |
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nlx_152589 |
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SCR_006782 |
Registry of Research Data Repositories, re3data.org: Registry of Research Data Repositories, re3data |
2026-07-28 09:41:37 |
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