Connectome Workbench
Resource Report
Resource Website
50+ mentions
|
Connectome Workbench (RRID:SCR_008750)
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CWB, wb_view, wb_command, wb_import
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software toolkit, source code, software resource
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Software brain visualization, analysis and discovery tool for fMRI and dMRI brain imaging data, including functional and structural connectivity data generated by the Human Connectome Project. Used to map brain imaging data. Allows for visualization of outputs from HCP pipelines from single subject, or average data from group of subjects and register that data onto standard brain atlas.
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visualization, connectivity, brain, human, fMRI, dMRI, brain imaging data, map neuroimaging data,
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is used by: BRAIN Initiative Cell Atlas Network
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: FAIRsharing
is related to: BALSA
is related to: Washington University in St. Louis; Missouri; USA
works with: ConnectomeDB
works with: NIMP: Neuroanatomy-anchored Information Management Platform for Collaborative BICAN Data Generation
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NIH Blueprint for Neuroscience Research ;
NIMH MH060974 |
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Free, Available for download, Freely available |
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nlx_143924 |
http://www.nitrc.org/projects/workbench, https://github.com/Washington-University/workbench, https://www.humanconnectome.org/software/workbench-command, https://www.humanconnectome.org/software/get-connectome-workbench, http://humanconnectome.org/connectome/connectome-workbench.html |
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SCR_008750 |
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2026-08-11 09:41:45 |
95 |
Washington University in St. Louis; Missouri; USA
Resource Report
Resource Website
1+ mentions
|
Washington University in St. Louis; Missouri; USA (RRID:SCR_000343)
|
WUSTL, WashU
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university
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Private research university in Greater St. Louis with its main campus mostly in unincorporated St. Louis County, Missouri and Clayton, Missouri.
|
missouri, undergraduate, postgraduate, graduate, university
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uses: Scizzle
uses: Research Accelerator
is affiliated with: Diabetes Research Centers
is related to: Alzheimers Disease Genetics Consortium
is related to: Clinical and Translational Science Awards Consortium
is related to: Urinary Stone Disease Research Network
is related to: Connectome Workbench
is parent organization of: Washington University School of Medicine Knight Alzheimers Disease Research Center
is parent organization of: DicomBrowser
is parent organization of: Washington University School of Medicine Genome Technology Access Center Core Facility
is parent organization of: DiMO
is parent organization of: Washington University Neuromuscular Disease Center
is parent organization of: Surface-Based Atlases
is parent organization of: Neurologic AIDS Research Consortium
is parent organization of: SomaticSniper
is parent organization of: SPLINTER
is parent organization of: DGIdb
is parent organization of: Bayesian Analysis of Common NMR Problems
is parent organization of: Genome Center BLAST Server
is parent organization of: Washington University in St. Louis Neuroscience
is parent organization of: Nematode.net
is parent organization of: Human Gut Microbiome Initiative
is parent organization of: Adaptive Poisson-Boltzmann Solver
is parent organization of: Human Connectome Coordination Facility
is parent organization of: MuSiC
is parent organization of: Washington University School of Medicine in St. Louis; Missouri; USA
is parent organization of: WUSTL Hybridoma Center
is parent organization of: WUSTL Mouse Cardiovascular Phenotyping Core
is parent organization of: WUSTL NNIN - Nano Research Facility
is parent organization of: WUSTL Biology Department Imaging Facility
is parent organization of: WUSTL Histology Core
is parent organization of: Washington University in St. Louis School of Medicine Division of Biology and Biomedical Sciences
is parent organization of: Collaborative Study on the Genetics of Alcoholism
is parent organization of: Stroke Trials Registry
is parent organization of: Neurology Image Library from The Internet Stroke Center
is parent organization of: WormBase
is parent organization of: ConnectomeDB
is parent organization of: NIMH Repository and Genomics Resources
is parent organization of: GLMdenoise: a fast, automated technique for denoising task-based fMRI data
is parent organization of: Washington University Center for Diabetes Translation Research Administrative Core in Diabetes Research Core
is parent organization of: Washington University Center for Diabetes Translation Research Dissemination and Implementation in Diabetes Research Core Facility
is parent organization of: Washington University Center for Diabetes Translation Research Solutions to Diabetes in Black Americans Core
is parent organization of: Washington University Center for Diabetes Translation Research Health Informatics in Diabetes Research Core
is parent organization of: Washington University Center for Diabetes Translation Research
is parent organization of: Washington University Center for Diabetes Translation Research Policy and Systems Science Analysis in Diabetes Research Core
is parent organization of: Washington University Center for Diabetes Translation Research Health Communication and Health Literacy Core Facility
is parent organization of: Washington University Center for Diabetes Translation Research Research Partnerships with American Indian/Alaskan Native Communities Core
is parent organization of: Washington University School of Medicine Genome Technology Access Center Core Facility
is parent organization of: Rodent Arena Tracker project
is parent organization of: SnackClock
is parent organization of: Feeding Experimentation Device project
is parent organization of: Washington University in St. Louis Human Cells, Tissues, and Organoids Core Facility
is parent organization of: Washington University School of Medicine Mass Spectrometry Technology Access Center Core Facility
is parent organization of: Washington University in St. Louis Washington University Center for Cellular Imaging Core Facility
is parent organization of: Washington University Digestive Diseases Research Core Center Biobank Core
is parent organization of: Washington University School of Medicine Diabetes Research Center Translational Diagnostics Core
is parent organization of: Washington University School of Medicine Diabetes Research Center Cell and Tissue Imaging Core
is parent organization of: Washington University School of Medicine Diabetes Research Center Mass Spectrometry Core
has organization facet: VarScan
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SCR_017964, Wikidata:Q777403, Crossref funder ID:100007268, ISNI:0000 0001 2355 7002, grid.4367.6, nlx_47548 |
https://ror.org/01yc7t268 |
|
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SCR_000343 |
Washington University |
2026-08-08 11:57:14 |
1 |
BRAIN Initiative Cell Atlas Network
Resource Report
Resource Website
10+ mentions
|
BRAIN Initiative Cell Atlas Network (RRID:SCR_022794)
|
BICAN
|
data or information resource, portal
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Provides molecular and anatomical foundational framework for study of brain function and disorders.Comprehensive Center on Human and Non-Human Primate Brain Cell Atlases with goal to build reference brain cell atlases that will be used throughout research community.
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Cell Atlas Network, study of brain function and disorders, build reference brain cell atlases
|
uses: NIH NeuroBioBank
uses: NeMOarchive
uses: Terra
uses: Brain Image Library
uses: SpinalJ
uses: Cell Annotation Platform
uses: Connectome Workbench
uses: BALSA
uses: Cytosplore Viewer
uses: Cellarium
is related to: BICCN
is related to: Brain Cell Data Viewer
is related to: CZ CELLxGENE Discover
is related to: CATlas
is related to: Epi-Retro-Seq
is related to: NeMO Analytics
is related to: UCSC Cell Browser
is related to: MetaMarkers
is related to: Brain Knowledge Platform
is related to: Human Brain Variation Project
has parent organization: Allen Institute
has parent organization: Allen Institute for Brain Science
has organization facet: Slide-seq Pipeline
has organization facet: ATAC Pipeline
has organization facet: Multiome Pipeline
has organization facet: Whole Mouse Brain Cell and Genome Atlas
has organization facet: snm3C Pipeline
has organization facet: Paired-Tag Pipeline
has organization facet: NIMP: Neuroanatomy-anchored Information Management Platform for Collaborative BICAN Data Generation
has organization facet: NHash Identifier
has organization facet: Atlas Ontology Model
has organization facet: Allen Brain Map BICCN Data Catalog
has organization facet: Atlas Ontology Model
has organization facet: Early Postnatal Developmental Mouse Brain Atlas
has organization facet: BRAINCELL-AID
has organization facet: JOSA
has organization facet: Annotation Comparison Explorer
has organization facet: Brain Image Library
has organization facet: DELAY
has organization facet: chromograph
has organization facet: fetal_brain_multiomics
has organization facet: CBI BrAinPI
has organization facet: bkbit
has organization facet: BuildIndices
has organization facet: HOMBA Macaque Reference Atlas
has organization facet: HOMBA Adult Marmoset Basal Ganglia Atlas
has organization facet: SlideTags.wdl
has organization facet: storm-control
has organization facet: PIANO:Probabilistic Inference Autoencoder Networks for multi-Omics
has organization facet: BICAN Basal Ganglia Epigenome Explorer
has organization facet: Brain Initiative Cell Atlas Network Data Catalog
has organization facet: BrainKB
has organization facet: CrossExpression
has organization facet: bican-mccarroll-manuscript1
has organization facet: HMBA Adult Human Brain Atlas
has organization facet: Harmonized Ontology of Mammalian Brain Anatomy (HOMBA)
has organization facet: NIMP Analytics
has organization facet: Human Striatum Slide-tags Viewer
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NIH MH130968;
NIH MH130918 |
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Free, Freely available |
|
|
https://www.braininitiative.org/funding-opportunity/brain-initiative-cell-atlas-network-bican-comprehensive-center-on-human-and-non-human-primate-brain-cell-atlases-um1-clinical-trial-not-allowed/, https://braininitiative.nih.gov/funding-opportunies/brain-initiative-cell-atlas-network-bican-specialized-collaboratory-human-non |
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SCR_022794 |
|
2026-08-10 09:37:12 |
33 |
ConnectomeDB
Resource Report
Resource Website
50+ mentions
|
ConnectomeDB (RRID:SCR_004830)
|
ConnectomeDB
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service resource, image collection, data or information resource, storage service resource, database, image repository, data repository
|
Data management platform that houses all data generated by the Human Connectome Project - image data, clinical evaluations, behavioral data and more. ConnectomeDB stores raw image data, as well as results of analysis and processing pipelines. Using the ConnectomeDB infrastructure, research centers will be also able to manage Connectome-like projects, including data upload and entry, quality control, processing pipelines, and data distribution. ConnectomeDB is designed to be a data-mining tool, that allows users to generate and test hypotheses based on groups of subjects. Using the ConnectomeDB interface, users can easily search, browse and filter large amounts of subject data, and download necessary files for many kinds of analysis. ConnectomeDB is designed to work seamlessly with Connectome Workbench, an interactive, multidimensional visualization platform designed specifically for handling connectivity data. De-identified data within ConnectomeDB is publicly accessible. Access to additional data may be available to qualified research investigators. ConnectomeDB is being hosted on a BlueArc storage platform housed at Washington University through the year 2020. This data platform is based on XNAT, an open-source image informatics software toolkit developed by the NRG at Washington University. ConnectomeDB itself is fully open source.
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brain, connectivity, human, adult human, evaluation, clinical, behavior, data set, diffusion imaging, resting-state fmri, task-evoked fmri, t1-weighted mri, t2-weighted mri, structural mapping, myelin mapping, magnetoencephalography, electroencephalography, fmri, twin
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is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: XNAT - The Extensible Neuroimaging Archive Toolkit
has parent organization: Washington University in St. Louis; Missouri; USA
works with: Connectome Workbench
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Healthy, Twin, Non-twin sibling |
NIH Blueprint for Neuroscience Research ;
Washington University in St. Louis; Missouri; USA ;
McDonnell Center for Systems Neuroscience ;
NIMH 1U54MH091657 |
PMID:22366334 |
Account required, Open unspecified license, Acknowledgement required, See Data Use Terms, The community can contribute to this resource |
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nlx_143923 |
|
|
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SCR_004830 |
|
2026-08-11 09:41:09 |
63 |
BALSA
Resource Report
Resource Website
1+ mentions
|
BALSA (RRID:SCR_022960)
|
BALSA
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data or information resource, database
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Database for hosting and sharing neuroimaging and neuroanatomical datasets for human and primate species. Includes 1) curated, user created Study datasets, extensively analyzed neuroimaging data associated with published figures/manuscripts, 2) Reference datasets mapped to brain atlas surfaces and volumes in human and nonhuman primates for use as general resources (e.g., published cortical parcellations), and 3) ConnectomeDB powered by BALSA for distributing HCP-Young Adult and related HCP-style processed imaging and phenotypic datasets. Datasets in BALSA may include PMID and/or DOI that links them directly to relevant publications.
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Brain Analysis Library, spatial maps and atlases, hosting and sharing neuroimaging and neuroanatomical datasets, human and primate species, neuroimaging data associated with published figures, datasets mapped to brain atlas, Human Connectome Project, HCP
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is used by: BRAIN Initiative Cell Atlas Network
is related to: Human Connectome Coordination Facility
is related to: Connectome Workbench
|
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NIMH MH060974;
NIMH R01MH060974 |
PMID:27074495 |
Free, Freely available |
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r3d100013646 |
https://balsa.wustl.edu/about, https://doi.org/10.17616/R31NJN0U |
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SCR_022960 |
Brain Analysis Library of Spatial maps and Atlases |
2026-08-10 09:37:15 |
8 |
FAIRsharing
Resource Report
Resource Website
50+ mentions
|
FAIRsharing (RRID:SCR_004177)
|
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data or information resource, database
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Web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards, databases and data policies, combined with integrated view across all three types of resource. By registering your resource on FAIRsharing, you gain credit for your work, increase its visibility outside of your direct domain, reduce potential for unnecessary reinvention and proliferation of standards and databases.
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Metadata standard, ontology, data sharing, data policy, data standard
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is used by: Integrated Datasets
lists: Brain Imaging Data Structure (BIDs)
lists: EBRAINS
lists: Code Ocean
lists: Distributed Archives for Neurophysiology Data Integration
lists: CaltechDATA
lists: DataONE
lists: GBIF - Global Biodiversity Information Facility
lists: Incorporated Research Institutions for Seismology
lists: Mendeley Data
lists: Open Science Framework
lists: MorphoBank
lists: PhysioNet
lists: GigaDB
lists: INPTDAT
lists: OpenNeuro
lists: Cancer Imaging Archive (TCIA)
lists: Qualitative Data Repository
lists: UK Data Archive
lists: Dryad Digital Repository
lists: BOLD
lists: ZENODO
lists: Vivli
lists: FigShare
lists: Influenza Research Database (IRD)
lists: Cambridge Structural Data Base
lists: National Snow and Ice Data Center
lists: Virus Pathogen Resource (ViPR)
lists: 4TU.ResearchData
lists: Australian Data Archive
lists: Atlas of Living Australia
lists: Australian Ocean Data Network
lists: Arch
lists: Bolin Centre Database
lists: B2SHARE Eudat
lists: Connectome Workbench
is listed by: FORCE11
is listed by: re3data.org
is related to: bioDBcore
is related to: Standards-based Infrastructure with Distributed Resources
is related to: Genomic Standards Consortium
is related to: ELIXIR Tools and Data Services Registry
is related to: NCI Imaging Data Commons
is related to: Cancer Research Data Commons
is related to: SciLifeLab Data Platform
is related to: NiPoppy
has parent organization: University of Oxford; Oxford; United Kingdom
is parent organization of: Minimum Information for Biological and Biomedical Investigations
is parent organization of: FAIRSharing Catalogue of Standards
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Free, freely available |
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r3d100011250, nlx_143602, SCR_017615 |
http://www.force11.org/node/4701, https://fairsharing.org/, https://doi.org/10.17616/R3C621 |
http://www.biosharing.org/ |
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SCR_004177 |
BioSharing |
2026-08-10 09:32:12 |
74 |
NIMP: Neuroanatomy-anchored Information Management Platform for Collaborative BICAN Data Generation
Resource Report
Resource Website
1+ mentions
|
NIMP: Neuroanatomy-anchored Information Management Platform for Collaborative BICAN Data Generation (RRID:SCR_024684)
|
NIMP
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data or information resource, portal, organization portal
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Web application that tracks the status of the BICAN consortium tissue samples and related data.NIMP is developed under NIH BRAIN Initiative's BICAN U24MH130988 award as a part of the coordinating unit for biostatistics, informatics, and engagement (CUBIE) for the BRAIN Initiative Cell Atlas Network (BICAN) program.NIMP consists of two portals for BICAN collaborative data generation: the Specimen Portal and the Sequence Library (SeqLib) Portal. The Specimen Portal focuses on tissue management from donors to brain slabs and annotated brain samples. The SeqLib Portal manages the workflow starting from tissue, all the way downstream to track data deposition to assay-dependent, data-modality-specific archives. Both portals work in tandem to generate multimodal genomic data that can be traced back to their anatomical origins using the Allen Brain Atlas.
The portals provide multiple types of data interfaces through dashboards, APIs, faceted queries, and batch data ingestion and exporting. All of the underlying functionalities are achieved through a robust agile development strategy using NHash resource identifiers, metadata standardization, active combinatorial dashboarding, resource provenance linkage and rendering (e.g. Sankey diagrams), and dedicated interfaces with NIH Neuro Biobank, sequencing centers, NeMO, and the larger BICAN data ecosystem.
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BICAN, BICAN consortium tissue samples and related data, data tracking,
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works with: Connectome Workbench
is organization facet of: BRAIN Initiative Cell Atlas Network
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NIMH U24MH130988 |
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Restricted |
|
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https://specimenportal.com |
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SCR_024684 |
BICAN Specimen Portal |
2026-08-11 09:44:38 |
3 |
NeuroImaging Tools and Resources Collaboratory (NITRC)
Resource Report
Resource Website
100+ mentions
|
NeuroImaging Tools and Resources Collaboratory (NITRC) (RRID:SCR_003430)
|
NITRC
|
service resource, portal, community building portal, data or information resource, storage service resource, software repository, software resource, data repository
|
Software repository for comparing structural (MRI) and functional neuroimaging (fMRI, PET, EEG, MEG) software tools and resources. NITRC collects and points to standardized information about structural or functional neuroimaging tool or resource.
|
collaboration, information, resource, structural, functional, neuroimaging, MRI, fMRI, EEG, MEG, PET
|
is used by: NIF Data Federation
is used by: Consortium for Reliability and Reproducibility
is used by: DataLad
is recommended by: National Library of Medicine
lists: Dipy
lists: 3DMeshMetric
lists: MPScope
lists: VectorValuedHistogramNormalizer
lists: Faceted Search Based Ontology Visualizer
lists: Morphometry BIRN
lists: Colin 3T/7T High-resolution Atlas
lists: CMFreg
lists: BrainFX
lists: dinifti
lists: Center for Computational Biology at UCLA
lists: Convert MNI coordinates to or from XYZ
lists: Licensing issues in software and data
lists: Local Binary Pattern Analysis Tools for MR Brain Images
lists: MIView
lists: uManager
lists: Penn Hippocampus Atlas
lists: RapidArt
lists: Scribe
lists: ShapeWorks
lists: Vervet Probabilistic Atlas
lists: Talairach Daemon
lists: ADHD-200 Preprocessed Data
lists: LORIS - Longitudinal Online Research and Imaging System
lists: NVM
lists: Maps4Mipav (Exploratory JIST)
lists: Autism Tissue Program
lists: MEG Tools
lists: PyNIfTI
lists: LONI Visualization Tool
lists: Mind Research Network - COINS
lists: OpenElectrophy
lists: CIFTI Connectivity File Format
lists: 3DSlicerLupusLesionModule
lists: BrainNetworkConstructionAnalysisPlatform
lists: COMPARE
lists: Data Format Tools
lists: GesTr
lists: I/OWA
lists: MINC Example files
lists: cbiNifti: Matlab/Octave Nifti library
lists: BRAINSCut
lists: C-PAC
lists: Connectir
lists: DicomBrowser
lists: Hitachi Optical Topography System
lists: Net Station API
lists: imcalc: SPM batch image calculator
lists: BRAINSCortex
lists: Insight Segmentation and Registration Toolkit
lists: LONI Debabeler
lists: LONI Pipeline Processing Environment
lists: NiLearn
lists: MRI Studio
lists: BraVa
lists: Brede Wiki
lists: Center for Functional Neuroimaging Technologies
lists: Philips Users Community
lists: medInria
lists: Beijing: Eyes Open Eyes Closed Study
lists: vIST/e
lists: Camino
lists: Diffusion Tensor Imaging ToolKit
lists: TORTOISE
lists: NIDAG: Neuroimaging Data Access Group
lists: MRI CVPR
lists: vuTools
lists: Medical Image Processing and Visualization in Virtual Environments
lists: Brainstorm
lists: Atlas3D
lists: FMRISTAT - A general statistical analysis for fMRI data
lists: FreeSurfer
lists: Rosetta Bit
lists: Laboratory of Neuro Imaging
lists: Group ICA of fMRI Toolbox
lists: Hierarchical Attribute Matching Mechanism for Elastic Registration
lists: Internet Brain Segmentation Repository
lists: Neural ElectroMagnetic Ontologies (NEMO) Project
lists: Wavelet-based Image Fusion
lists: ITK-SNAP
lists: Internet Brain Volume Database
lists: Statistical non-Parametric Mapping
lists: VoxBo
lists: NITRC Computational Environment
lists: Spatially Constrained Parcellation
lists: Cluster reporter
lists: Cluster Extent Correction
lists: 4D Atlases Construction
lists: CIGAL
lists: CleanLine
lists: Computational Morphometry Toolkit
lists: Cognitive Paradigm Ontology
lists: aBEAT
lists: MR Connectome Automated Pipeline
lists: International Neuroinformatics Coordinating Facility
lists: Functional Regression Analysis of DTI Tract Statistics
lists: MCIC
lists: MGDM: Multi Geometric Deformable Model
lists: MIAS Registration Toolkit
lists: Medical Image Visualization and Analysis
lists: Microstructural correlation toolbox
lists: MisterI
lists: MriWatcher
lists: Multiple Correlation Function Tool
lists: NITRC Community Conferences Workshops and Meetings
lists: BRAINSFit
lists: INCF Software Center
lists: BrainVision Analyzer
lists: COGNISION
lists: DPARSF
lists: GLIRT
lists: MINC
lists: Group Level Imputation of Statistic Maps
lists: MRIcron
lists: Inter-Group Registration Toolbox
lists: MCML and CONV
lists: MEGSIM
lists: MIRIAD
lists: MRI Defacer
lists: MS lesion segmentation challenge 2008
lists: Measure Projection Toolbox
lists: Mindboggle
lists: Mindboggle-101 atlases
lists: ModelGUI
lists: Multi-Modal MRI Reproducibility Resource
lists: MultiTracer
lists: Multicomponent T2 estimation with stimulated echo correction
lists: NCANDA: Data Integration Component
lists: NFT
lists: Net Station EEG Software
lists: Network Based Statistic Toolbox
lists: NeuroScope
lists: Numerical Fibre Generator
lists: PSTNet: MRI Simulator
lists: cortex
lists: iBEAT
lists: M3
lists: Group ICA Of EEG Toolbox
lists: 4D-PARSeR Pathological Anatomy Regression via Segmentation and Registration
lists: Automatic Segmentation Tool Adapter
lists: DTI-TEMPLATE-RHESUS-MACAQUES
lists: LONI Provenance Editor
lists: MNI N3
lists: MRI Digital Projection System
lists: NIDB - Neuroinformatics Database
lists: NIPY
lists: NIRAL Utilities
lists: NIRx NIRS Neuroimaging
lists: NIRx2nirs: A NIRx to .nirs data converter
lists: NITRC Enhanced Services
lists: NITRC GForge Extensions
lists: NPTK
lists: NeuroImaging Analysis Kit (NIAK)
lists: NiBabel
lists: NiftyRec
lists: Nipype
lists: Nirfast
lists: Nitime
lists: Non-Rigid Image Registration Evaluation Project
lists: Normative Independent Component Analysis
lists: OEI: fMRI compatible olfactometer
lists: ORS Visual SI
lists: OpenMEEG
lists: PANDA
lists: PESTICA fMRI Physio Detection/Correction
lists: PHYCAA+: adaptive physiological noise correction for BOLD fMRI
lists: ParaView
lists: Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR)
lists: Presentation
lists: PySurfer
lists: Pythagorean Displacement and Motion Regressors
lists: Quantitative Diffusion Tools
lists: R-package for adaptive DWI analysis
lists: R-package for adaptive fMRI analysis
lists: REX
lists: RFT FDR
lists: ROBEX
lists: RT Image
lists: Resource Ontology Discussion Group
lists: Rodent Brain Extraction Tool
lists: Rodent Cortical Thickness Analysis
lists: S-rep Fitting Statistics and Segmentation
lists: SCIRun
lists: SCRalyze
lists: SOCK
lists: SPHARM-MAT
lists: SPHARM-PDM Toolbox
lists: SRI24 Atlas: Normal Adult Brain Anatomy
lists: Seg3D
lists: ShapeComplexAtlas
lists: Signed Differential Mapping
lists: Sleuth
lists: Slice:Drop
lists: Slicer3 Example Modules
lists: Source Information Flow Toolbox
lists: Spanish Resting State Network
lists: Spatial Analysis 3D
lists: Stereoscopic Atlas of Intrinsic Brain Networks
lists: UNC Infant 0-1-2 Atlases
lists: UNC Primate Brain Atlas
lists: XCEDE Schema
lists: peak nii
lists: pydicom
lists: pyxnat
lists: scikit-learn
lists: shapeAnalysisMANCOVA - SPHARM tools
lists: VMTK in 3D Slicer
lists: 3D Interactive Chemical Shift Imaging
lists: BRAINSSurfaceStats
lists: Brain lesion segmentation tool using SVM
lists: Diffusion Tractography with Kalman Filter
lists: Fast Nonlocal Means for MRI denoising
lists: Monte Carlo Simulation Software: tMCimg
lists: Web Interfaces for Multiscale Images
lists: STAPLE
lists: Segmentation Validation Engine
lists: Spatial Statistical Parametric Mapping
lists: SpineSegmentation module for 3DSlicer
lists: Stochastic Tractography System
lists: Subject Library
lists: TAPIR
lists: TARQUIN
lists: Template Image Processing Library
lists: TetraMetrix
lists: TractoR: Tractography with R
lists: Triangle BioSystems
lists: TumorSim
lists: TurtleSeg
lists: UNC Human Brain Atlas
lists: VR Worlds 2
lists: Vaa3D
lists: ValMap: simple statistical mapping tool
lists: WFU Biological Parametric Mapping Toolbox
lists: WFU Pipeline
lists: Working Memory Trainer
lists: vis: SPM Visualized Statistics toolbox
lists: Synchronized Histological Image Viewing Architecture
lists: LONI ShapeViewer
lists: LONI ShapeTools
lists: FFT Library
lists: Automated recognition of brain region mentions in neuroscience literature.
lists: NUTMEG
lists: Cognitive Atlas
lists: Mouse BIRN Atlasing Toolkit
lists: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat
lists: FSL
lists: LEAD-DBS
lists: Brainscape
lists: EONS
lists: BioImage Suite
lists: ADNI - Alzheimer's Disease Neuroimaging Initiative
lists: MindSeer
lists: XNAT - The Extensible Neuroimaging Archive Toolkit
lists: brainmap.org
lists: ImageJ
lists: Neuroimaging Informatics Technology Initiative
lists: IMOD
lists: Statistics Online Computational Resource
lists: signalml.org
lists: Mouse Biomedical Informatics Research Network
lists: NIH MRI Study of Normal Brain Development
lists: MGH-USC Human Connectome Project
lists: Fusion ICA Toolbox
lists: Corpus Callosum Thickness Profile Analysis Pipeline
lists: ABIDE
lists: Mouse Connectome Project
lists: NITRC-IR
lists: Open Connectome Project
lists: neurodebian
lists: NIMH Data Archive
lists: ANTS - Advanced Normalization ToolS
lists: XNAT Extras
lists: TrackVis
lists: Brain Connectivity Toolbox
lists: FieldTrip
lists: LONI Inspector
lists: BrainLiner
lists: OpenNeuro
lists: Biomedical Informatics Research Network
lists: McConnell Brain Imaging Center MNI Macaque Atlas
lists: SINOMO
lists: DONE: Detection of Outlier NEurons
lists: Neuro Bureau
lists: ADHD-200 Sample
lists: 1000 Functional Connectomes Project
lists: PubBrain
lists: CBRAIN
lists: ENIGMA: Enhancing Neuro Imaging Genetics Through Meta-Analysis
lists: Bisque
lists: 3D Slicer
lists: Internet Analysis Tools Registry
lists: Neuromorphometrics
lists: Analysis of Functional NeuroImages
lists: Automated Image Registration
lists: BASH4RfMRI
lists: MNE software
lists: Object-Oriented Development Interface for NMR
lists: NYU CSC TestRetest
lists: Optseq - fMRI Event Scheduler
lists: TOADS-CRUISE Brain Segmentation Tools
lists: MouseTracker
lists: Hammer And WML Modules for 3D Slicer
lists: ABC (Atlas Based Classification)
lists: Allen Brain Atlas API
lists: Viking Viewer for Connectomics
lists: ARCTIC
lists: ArtRepair for robust fMRI
lists: Automatic Registration Toolbox
lists: Artifact Detection Tools
lists: Segmentation of Hippocampus Subfields
lists: ASL data processing tool box
lists: Bioelectromagnetism Matlab Toolbox
lists: PyMVPA
lists: Human Imaging Database
lists: BrainImage Software
lists: Brede Toolbox
lists: Computerized Anatomical Reconstruction and Editing Toolkit
lists: BrainColor: Collaborative Open Labeling Online Resource
lists: Registry Builder Data Harmonization and Aggregation Tool
lists: PsychoPy
lists: NiftySim
lists: NiftyReg
lists: Neurobiological Image Management System
lists: BRAINSTools
lists: MeshValmet: Validation Metric for Meshes
lists: BrainSuite
lists: DW-MRI Random Walk Simulator
lists: Web Game for Collaborative Labeling
lists: BrainVoyager Brain Tutor
lists: POLGUI - Matlab Polhemus Interface
lists: BrainVoyager Brain Viewer
lists: NeuroPub Visualizer
lists: NODDI Matlab Toolbox
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lists: Federal Interagency Traumatic Brain Injury Research Informatics System
lists: BrainMaps.org
lists: PRoNTo
lists: Scalable Brain Atlas
lists: NIH Human Connectome Project
lists: Mesh-based Monte Carlo (MMC)
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lists: MABMIS: Multi-Atlas Based Multi-Image Segmentation
lists: Monte Carlo eXtreme
lists: Whole Brain Catalog
lists: BCILAB
lists: ABSORB: Atlas Building by Self-Organized Registration and Bundling
lists: VAMCA
lists: SPM
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lists: SurfStat
lists: Cambridge Brain Activation
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lists: BrainVISA / Anatomist
lists: MIPAV: Medical Image Processing and Visualization
lists: NeuroLens
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lists: Open Access Series of Imaging Studies
lists: BioSig: An Imaging Bioinformatics System for Phenotypic Analysis
lists: xjView: A Viewing Program For SPM
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lists: Integrated Manually Extracted Annotation
lists: JIST: Java Image Science Toolkit
lists: Functional Analysis of Diffusion Tensor
lists: AHEAD
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lists: 3DBar
lists: Cancer Imaging Archive (TCIA)
lists: Pediatric Imaging Neurocognition and Genetics
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lists: CAMINO-TRACKVIS
lists: CANDI Share: Schizophrenia Bulletin 2008
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lists: CCSeg - Corpus Callosum Segmentation
lists: Cerebral Blood Flow Database and Analysis Pipeline
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lists: DFBIdb
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lists: DICOM UploadGUI
lists: DOTS WM tract segmentation
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lists: DW-MRI registration in FSL
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lists: FBIRN Image Processing Scripts
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lists: Finsler tractography module for Slicer
lists: Fluid Registration and Atlas Toolkit
lists: Framework for Open Programmatic Access
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lists: IDeA Lab brain image processing suite
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lists: INIA19 Primate Brain Atlas
lists: JHU Proj. in Applied Medical Imaging
lists: JIST Resources for Algorithm Development
lists: BRAINSROIAuto
lists: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI
lists: Landman NeuroImaging Tools
lists: Local Label Learning Segmentation
lists: MASI Label Fusion
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lists: Multi-Echo Independent Component Regression Group-Level Connectivity Dataset
lists: Multi-fiber Reconstruction from DW-MRI
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lists: UNC Human DTI Brain Atlas
lists: BRAINSTestData
lists: cPPI Toolbox for fMRI
lists: fMRI Classification in R
lists: fMRI-CPCA
lists: fNIRS Data Analysis Environment
lists: factory t1 dti
lists: BRAINSDemonWarp
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lists: ADJUST
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lists: Connectome File Format
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lists: DTI BrainImageScope
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lists: DWI/DTI Quality Control Tool: DTIPrep
lists: Diffusional Kurtosis Estimator
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lists: E-Prime Extensions for fMRI
lists: EEGVIS
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lists: GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data
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lists: MagVenture: MagPro Magnetic Stimulator
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lists: MoTrak Head Motion Tracking System
lists: NCIGT Fast Imaging Library
lists: NeuroWeb - NeuroImaging Database
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lists: Neurophysiological Biomarker Toolbox
lists: SVV
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lists: UNC/Utah NAMIC DTI Fiber Analysis Framework
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lists: QCQP
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lists: Robust Biological Parametric Mapping
lists: SPM SS - fMRI functional localizers
lists: Solar Eclipse Imaging Genetics tools
lists: VPixx: VIEWPixx /3D
lists: resting-state pediatric imaging template
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lists: COBRE
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lists: USC Multimodal Connectivity Database
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lists: ASA - Advanced Source Analysis
lists: BRAINSTracer
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lists: NeuronJ: An ImageJ Plugin for Neurite Tracing and Quantification
lists: NeuroVault
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lists: NINDS Repository
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lists: ODIN
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lists: Brainnetome Atlas Viewer
lists: Brainnetome fMRI toolkit
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lists: CARLsim: a GPU-accelerated SNN Simulator
lists: Clinical Toolbox for SPM
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lists: dcm2nii
lists: DICOMConvert
lists: Displacement Field Viewer
lists: DTI denoising
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lists: Efficient Permutation Testing
lists: DTI-TK
lists: ERPwavelab
lists: ExPosition Packages
lists: Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation
lists: Forward: Accurate finite element electromagnetic head models
lists: freesurfR
lists: Functional Connectivity Analysis Tool for near-infrared spectroscopy data
lists: GazeReader
lists: gCCA
lists: Generation R Pediatric MRI Resources
lists: GIMME
lists: GLMdenoise: a fast, automated technique for denoising task-based fMRI data
lists: GraphVar: A toolbox for comprehensive graph analyses of functional brain connectivity
lists: HAMMER: Deformable Registration
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lists: High-quality diffusion-weighted imaging of Parkinsons disease
lists: MGA - Multimodal Glioma Analysis
lists: Image Synthesis Tools
lists: Imeka Tractography Service
lists: International Imaging Genetics Conference
lists: Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.0
lists: Iterative dual-regression with sparse prior
lists: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI
lists: KWScene: MRML-based Atlas and Scene Builder/Reader/Writer
lists: L-Neuron
lists: Laplace Beltrami Filter on QuadEdge Meshes
lists: libSBML
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lists: MARS (Multi-Atlas Robust Segmentation)
lists: minc-toolkit
lists: minc-toolkit-testsuite
lists: MISST - Microstructure Imaging Sequence Simulation ToolBox
lists: MRI Neuroanatomy Labeling Services
lists: MRIcroS
lists: Multivariate General Linear Models (MGLM) on Riemannian Manifolds
lists: Neoseg
lists: NeoSegPipeline
lists: NeuriteTracer
lists: NeuroElf
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lists: NIH Pediatric MRI Data Repository
lists: NIH-CIDI Lung Segmentation Tool
lists: NiiStat
lists: Northwestern University Schizophrenia Data and Software Tool (NUSDAST)
lists: Notion ResearchPACS
lists: NTU-DSI-122: a DSI template in ICBM-152 space
lists: OpenViBE
lists: OpenWalnut
lists: Orientation Distribution Function in Constant Solid Angle (CSA-ODF)
lists: Parkinsons Disease Discovery Database
lists: Prediction and Diagnosis for Depression and Schizophrenia
lists: Preprocessed Connectomes Project
lists: Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data
lists: Ruby NIfTI
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lists: ShapePopulationViewer
lists: Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
lists: SPIKECOR: fMRI tool for automated correction of head motion spikes
lists: Spinal Cord Toolbox
lists: Stark Cross-Sectional Aging
lists: Brain Coactivation Map
lists: Multiscale Object Orientation Simulation Environment
lists: Striatal Subregional VOImap
lists: Topographica
lists: Turbo-BrainVoyager
lists: CRL Unbiased and Deformable Spatiotemporal Atlas of the Fetal Brain
lists: UNC-Wisconsin Neurodevelopment Rhesus MRI Database
lists: Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX)
lists: VMTK in 3D Slicer
lists: Wisconsin Cortical Thickness Analysis (CTA) Toolbox
lists: XFSL: An FSL toolbox
lists: XNBC
lists: YMDTI: Diffusion Tensor Images of Healthy Young Males
lists: BraTumIA (Brain Tumor Image Analysis)
lists: CAWorks
lists: Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)
lists: Graph Theory GLM (GTG) MATLAB Toolbox
lists: Functional Mixed Processes Models
lists: Papaya
lists: Parallel Stochastic Ion Channel Simulator
lists: Advanced Connectivity Analysis (ACA)
lists: International Imaging Genetics Conference
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lists: Optseq
lists: ENIGMA-DTI Pipeline
lists: Umea Brain Arteries
lists: MetaSearch
lists: BrainBox
lists: BluePyOpt
lists: MultiXplore
lists: Automatic Tractography-based Parcellation Pipeline
lists: Epilepsy T1 and Hippocampal Segmentation Datasets
lists: Mixed Effect Model of Genetic-Set and Environment Interaction
lists: masked ICA (mICA) Toolbox
lists: Altered States Database
lists: User Friendly Functional Connectivity - UF²C
lists: Intra- and inter-scanner reliability of RS-fMRI BOLD and ASL with eyes closed vs. eyes open
lists: Region to Region
lists: Waxholm Space Atlas of the Sprague Dawley Rat Brain
lists: Nutil - Neuroimaging utilities
lists: MeshView
lists: vini: A viewer for fMRI data
lists: brainGraph
lists: Diffusion Toolkit
lists: Neurodocker
lists: HeuDiConv: a heuristic-centric DICOM converter
lists: Knowing what you know (kwyk) - Bayesian Brain Parcellation
lists: Rhesus Macaque Brain Atlases
lists: MIITRA atlas
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lists: ReproMan
lists: ABCD-ReproNim Course
lists: Ventricular Morphometry Analysis System
lists: ONPRC18 Multimodal MRI Atlas
lists: volBrain
lists: Waxholm Space
is affiliated with: Manual Align RTS2000
is related to: University of California; San Diego;National Center for Microscopy and Imaging Research - NCMIR
has parent organization: Harvard University; Cambridge; United States
has parent organization: NIH Blueprint for Neuroscience Research
is parent organization of: Licensing issues in software and data
is parent organization of: NITRC Enhanced Services
is parent organization of: Resource Ontology Discussion Group
is parent organization of: NITRC-IR
is parent organization of: 1000 Functional Connectomes Project
is parent organization of: NYU CSC TestRetest
is parent organization of: NITRC Books
is parent organization of: NITRC Community
is parent organization of: ABIDE
is parent organization of: COBRE
is parent organization of: Group Sparse Canonical Correlation Analysis
is parent organization of: Challenge Competitions Collection
is parent organization of: 1000 Functional Connectomes Project
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NIH Blueprint for Neuroscience Research ;
NIMH ;
NIDA ;
NIBIB U24 EB023398;
NINDS R44 NS074540 |
PMID:26044860
PMID:18999128 |
Free, Freely available |
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nif-0000-00202, r3d100010784, r3d100011515 |
https://doi.org/10.17616/R3W32N |
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SCR_003430 |
Neuroimaging Informatics Tools and Resources Clearinghouse, , NeuroImaging Tools and Resources Collaboratory, Neuroimaging Informatics Tools Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools and Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools Resources Clearinghouse |
2026-08-11 09:40:44 |
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