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URL: https://github.com/AllenInstitute/Spatial-Transcriptomics-Processing-Pipeline
Proper Citation: SCALPEL (RRID:SCR_029048)
Description: Software pipeline for processing large-scale spatial transcriptomics data. Used to support the analysis of large, atlas-level datasets.
Synonyms: Spatial Cell Analysis, and Expression Linking, Processing, Labeling
Resource Type: software resource, software toolkit
Defining Citation: DOI:10.64898/2026.01.09.698732v3
Availability: Free, Available for download, Freely available
Resource Name: SCALPEL
Resource ID: SCR_029048
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Source: SciCrunch Registry (RRID:SCR_005400)
Description: Interactive portal for finding and submitting biomedical resources. Resources within SciCrunch have assigned RRIDs which are used to cite resources in scientific manuscripts. SciCrunch Registry, formerly NIF Registry, provides resources catalog. Allows to add new resources. Allows edit existing resources after registration. Curators are tasked with identifying and registering resources, examining data, writing configuration files to index and display data and keeping contents current.
URL: https://rrid.site/rin/sources/SCR_005400
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