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Resource Name
BICCN
RRID:SCR_015820 RRID Copied      
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BICCN (RRID:SCR_015820)
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Resource Information

URL: https://biccn.org

Proper Citation: BICCN (RRID:SCR_015820)

Description: Consortium for the cell census in the brain. Integrated network of data generating centers, data archives, and data standards developers, with the goal of systematic multimodal brain cell type profiling and characterization. Emphasis of the BICCN is on the whole mouse brain with demonstration of prototype feasibility for human and nonhuman primate brains.

Abbreviations: BICCN

Synonyms: BICCN 2.0, BRAIN Initiative Cell Census Network, BRAIN Initiative Cell Census Network (BICCN)

Resource Type: consortium, data or information resource, portal, organization portal

Defining Citation: PMID:37390046

Keywords: cell census, neuroscience, brain, brain initiative cell census network, whole mouse brain,

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This resource

uses

QuickNII

uses

HistoloZee

uses

CellLocator

uses

Semi-Manual Alignment to Reference Templates

uses

LoomPy

uses

Cytosplore Viewer

uses

Allen Human Brain Atlas: BrainSpan (Atlas of the Developing Brain)

uses

Blue Brain Cell Atlas

uses

Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas

uses

Hippocampome.org

uses

Neuron Phenotype Ontology

uses

Brain Image Library

uses

Distributed Archives for Neurophysiology Data Integration

uses

NeuroMorpho.Org

uses

Azimuth

uses

Brain Observatory Storage Service and Database (BossDB)

uses

Optimus Pipeline

uses

scATAC Pipeline

uses

Smart-seq2 Single Nucleus Multi Sample Pipeline

uses

CEMBA MethylC Seq Pipeline

uses

Brain Architecture Project

uses

Single Cell Portal

uses

MorphoHub

uses

Enhanced and Unified Anatomical Labeling for Common Mouse Brain Atlas

uses

Mouse Connectome Project

uses

Allen Mouse Brain Reference Atlas

uses

Allen Mouse Brain Common Coordinate Framework

uses

Allen Human Reference Atlas, 3D, 2020

uses

NeMO Analytics

uses

ANTS - Advanced Normalization ToolS

uses

CloudReg

uses

Brainome portal

uses

CATlas

uses

MetaNeighbor

uses

Cell Annotation Platform

uses

cellxgene

uses

Neuroglancer

uses

Vaa3D

uses

QuickNII and VisuAlign

uses

Hi5App

uses

CloudVolume

uses

neuroXiv

uses

Brain Data Standards Ontology

uses

Pittsburgh Supercomputing Center

uses

Molecular Biosensor and Imaging Center

uses

Generative Diffeomorphic Mapping

uses

NIH NeuroBioBank

uses

NeMOarchive

lists

ccf_streamlines

is related to

Mouse Connectome Project

is related to

BarensLab Mini-Atlas

is related to

Cumulus

is related to

Pegasus

is related to

Cirrocumulus

is related to

Gene functional conservation across cell types and species

is related to

BRAIN Initiative Cell Atlas Network

is related to

ATAC Pipeline

is related to

Slide-seq Pipeline

has parent organization

Allen Institute

has parent organization

Allen Institute for Brain Science

provides

mBrainAligner

provides

BICCN Cell Registry

provides

Cell Type Knowledge Explorer

provides

Epiviz

has organization facet

BICCN Anatomy and Morphology Project

has organization facet

Cell Type Knowledge Explorer

has organization facet

mBrainAligner

has organization facet

Terra

has organization facet

Allen Brain Cell Atlas

has organization facet

Multiome Pipeline

has organization facet

Allen Software Development Kit

has organization facet

BICCN Imaging and analysis Techniques to Construct Cell Census Atlas of Human Brain

has organization facet

Allen Brain Map BICCN Data Catalog

has organization facet

snM3C Pipeline

has organization facet

Paired-Tag Pipeline

Usage and Citation Metrics

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Ratings and Alerts

No rating or validation information has been found for BICCN.

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Data and Source Information