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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Authority Synonyms Record Last Update Mentions Count
Jmol
 
Resource Report
Resource Website
100+ mentions
Jmol (RRID:SCR_003796) Jmol d visualization software, software application, software resource, standalone software An open-source Java viewer for chemical structures in 3D with features for chemicals, crystals, materials and biomolecules. It is cross-platform, running on Windows, Mac OS X, and Linux/Unix systems and features an applet, application, and systems integration component. chemical, crystal, material, biomolecule, java is used by: Glyco3D
is listed by: SoftCite
has parent organization: SourceForge
PMID:28472503
PMID:28316648
GNU Lesser General Public License, Acknowledgement requested nlx_158093 SCR_003796 SciCrunch Registry Jmol: an open-source Java viewer for chemical structures in 3D 2026-09-26 02:13:33 245
SourceForge
 
Resource Report
Resource Website
500+ mentions
SourceForge (RRID:SCR_004365) data access protocol, software resource, web service Web based service that offers software developers centralized online location to control and manage free and open source software projects. Open source software tool and business public software platform. software, platform, tool, resource, catalog, community, project, , FASEB list lists: Clinical Measurement Ontology
lists: Measurement Method Ontology
lists: CHEBI
lists: Fly Taxonomy
lists: Software Ontology
lists: MIAPA
lists: Comparative Data Analysis Ontology
lists: SOAPfuse
lists: MetAssign
lists: Avalon Cheminformatics Toolkit
lists: FMAToolbox
lists: Multivariate Analysis of Transcript Splicing
is related to: Wisconsin White Matter Hyperintensities Segmentation Toolbox
is related to: BVA import/export EEGLAB plugin
is parent organization of: SP-Designer
is parent organization of: BlackOPs
is parent organization of: UTR
is parent organization of: CG-Pipeline
is parent organization of: iMethy
is parent organization of: dprimer
is parent organization of: Dissect
is parent organization of: AbMining ToolBox
is parent organization of: siRNArules
is parent organization of: MysiRNA-designer
is parent organization of: D-Tailor
is parent organization of: BioLemmatizer
is parent organization of: exomeSuite
is parent organization of: Sequence Read Format
is parent organization of: BLASTPLOT
is parent organization of: Magnolya
is parent organization of: GMATo
is parent organization of: GemSIM
is parent organization of: Grinder
is parent organization of: MS-Spectre
is parent organization of: Quant
is parent organization of: GProX
is parent organization of: PeptideProphet
is parent organization of: ProteinProphet
is parent organization of: OMSSAPercolator
is parent organization of: Flicker
is parent organization of: LIPAGE
is parent organization of: fqzcomp
is parent organization of: ArrayPlex
is parent organization of: cuteNMR
is parent organization of: Jnomics
is parent organization of: JMolDraw
is parent organization of: CGAP-Align
is parent organization of: Kinannote
is parent organization of: ParseCNV
is parent organization of: riboPicker
is parent organization of: GENSENG
is parent organization of: AS-Peak
is parent organization of: FunctSNP
is parent organization of: Micro-Analyzer
is parent organization of: Reprever
is parent organization of: POPBAM
is parent organization of: pyQPCR
is parent organization of: miRprimer
is parent organization of: BAIT
is parent organization of: fourSig
is parent organization of: MaryGold
is parent organization of: TOPPAS
is parent organization of: Ishtar
is parent organization of: mzMatch
is parent organization of: ViReMa
is parent organization of: VariantMaster
is parent organization of: NGS-Cleaner
is parent organization of: drFAST
is parent organization of: PhenoFam
is parent organization of: GMcloser
is parent organization of: Bycom
is parent organization of: NGS tools for the novice
is parent organization of: Opera
is parent organization of: SRMA
is parent organization of: DeNovoGear
is parent organization of: TriageTools
is parent organization of: detecttd
is parent organization of: FastUniq
is parent organization of: FineSplice
is parent organization of: AutoAssemblyD
is parent organization of: CUDA-EC
is parent organization of: qips
is parent organization of: SparseAssembler
is parent organization of: ParticleCall
is parent organization of: skewer
is parent organization of: CrossMap
is parent organization of: Breakway
is parent organization of: MUMmerGPU
is parent organization of: PHACCS
is parent organization of: ChIP-seq
is parent organization of: Mutascope
is parent organization of: metabnorm
is parent organization of: KAnalyze
is parent organization of: NGSrich
is parent organization of: Mugsy
is parent organization of: BACContigEditor
is parent organization of: HAPLOPAINTER
is parent organization of: PennSeq
is parent organization of: DNACLUST
is parent organization of: ReCount - A multi-experiment resource of analysis-ready RNA-seq gene count datasets
is parent organization of: Ray
is parent organization of: openADAM
is parent organization of: DMET-Analyzer
is parent organization of: SNVer
is parent organization of: Cake
is parent organization of: Matchprot
is parent organization of: NIDB - Neuroinformatics Database
is parent organization of: RUbioSeq
is parent organization of: SCRalyze
is parent organization of: TARQUIN
is parent organization of: Rainbow
is parent organization of: GLProbs
is parent organization of: ANDES
is parent organization of: Batch Oligo Selection Script
is parent organization of: rDock
is parent organization of: Biologic Stylus
is parent organization of: MIPE
is parent organization of: FAS-DPD
is parent organization of: mrsFAST
is parent organization of: mrCaNaVaR
is parent organization of: SaskPrimerFS
is parent organization of: XORRO
is parent organization of: SALT
is parent organization of: Gemi
is parent organization of: Vertebrate Trait Ontology
is parent organization of: Xournal
is parent organization of: Metabolomics Standards Initiative
is parent organization of: SpliCQ
is parent organization of: ORFprimer
is parent organization of: JCVI Primer Designer
is parent organization of: deFuse
is parent organization of: Amplicon
is parent organization of: PrimerSeq
is parent organization of: Niftilib
is parent organization of: GEOSS
is parent organization of: GEPAT
is parent organization of: Jmol
is parent organization of: SeqExpress
is parent organization of: InsertionMapper
is parent organization of: HLASeq
is parent organization of: BamView
is parent organization of: CB-Commander
is parent organization of: Vanator
is parent organization of: SnoopCGH
is parent organization of: PASHA
is parent organization of: USeq
is parent organization of: SVMerge
is parent organization of: Pythia
is parent organization of: Bambus
is parent organization of: cortex var
is parent organization of: UnoSeq
is parent organization of: VFS
is parent organization of: ASOoViR
is parent organization of: AnnTools
is parent organization of: COVA
is parent organization of: GESND
is parent organization of: ORMAN
is parent organization of: SnpEff
is parent organization of: HIVCD
is parent organization of: QuRe
is parent organization of: inGAP
is parent organization of: SPLITREAD
is parent organization of: (at)Note
is parent organization of: CoverageCalculator
is parent organization of: MolBioLib
is parent organization of: Ergatis
is parent organization of: SolexaQA
is parent organization of: CUSHAW2-GPU
is parent organization of: Maq
is parent organization of: mrFAST
is parent organization of: TreQ
is parent organization of: Hadoop-BAM
is parent organization of: MACE
is parent organization of: Sybil
is parent organization of: cancergrid-tma
is parent organization of: SAMtools Text Alignment Viewer
is parent organization of: Staden Package
is parent organization of: Maqview
is parent organization of: NGSView
is parent organization of: go-moose
is parent organization of: netClass
is parent organization of: ESTScan
is parent organization of: MAGMA
is parent organization of: ALCHEMY
is parent organization of: Brain Networks
is parent organization of: Neurofitter
is parent organization of: dna-bison
is parent organization of: BLESS
is parent organization of: Object-Oriented Development Interface for NMR
is parent organization of: HTQC
is parent organization of: OBO Tracker: Plant Ontology (PO) TERM requests
is parent organization of: COHCAP
is parent organization of: Picard
is parent organization of: SpliceGrapher
is parent organization of: Blox
is parent organization of: DMEAS
is parent organization of: Samscope
is parent organization of: GARM
is parent organization of: fitGCP
is parent organization of: POLGUI - Matlab Polhemus Interface
is parent organization of: Next-gen Sequencing Scaffolding Tool
is parent organization of: GASiC
is parent organization of: Qudaich
is parent organization of: Virmid
is parent organization of: BIGpre
is parent organization of: bioNerDS
is parent organization of: mubiomics
is parent organization of: GBS barcode splitter
is parent organization of: Adverse Event Ontology
is parent organization of: TaxoAssignement
is parent organization of: QUASR
is parent organization of: simhtsd
is parent organization of: BMDExpress
is parent organization of: HIA
is parent organization of: Mesh-based Monte Carlo (MMC)
is parent organization of: MIGen
is parent organization of: BAMStats
is parent organization of: Monte Carlo eXtreme
is parent organization of: DeconSeq
is parent organization of: neurospy
is parent organization of: Taipan
is parent organization of: BRIG
is parent organization of: GenoTan
is parent organization of: Multiscale Object Orientation Simulation Environment
is parent organization of: BioMail
is parent organization of: SeqPig
is parent organization of: CUDASW++
is parent organization of: OrChem
is parent organization of: Gecko
is parent organization of: LIBEEP
is parent organization of: MarsBaR region of interest toolbox for SPM
is parent organization of: SCALCE
is parent organization of: CLIIQ
is parent organization of: vipR
is parent organization of: MIRA
is parent organization of: Celera assembler
is parent organization of: SVDetect
is parent organization of: CONTRA
is parent organization of: FindPeaks
is parent organization of: PeakRanger
is parent organization of: Arpeggio
is parent organization of: BWA
is parent organization of: CloudBurst
is parent organization of: ERNE
is parent organization of: PPSEQ
is parent organization of: SEAL
is parent organization of: Genovar
is parent organization of: XDrawChem
is parent organization of: DNPTrapper
is parent organization of: Hawkeye
is parent organization of: TagCleaner
is parent organization of: ECHO
is parent organization of: SeqGene
is parent organization of: naiveBayesCall
is parent organization of: EBARDenovo
is parent organization of: Ray Meta
is parent organization of: Scramble
is parent organization of: PerlPrimer
is parent organization of: CowCoDA
is parent organization of: MZmine
is parent organization of: OBI-Warp
is parent organization of: OpenMS
is parent organization of: CPFP
is parent organization of: TOPP
is parent organization of: swissPIT
is parent organization of: Antilope
is parent organization of: ICPL ESIQuant
is parent organization of: MFPaQ
is parent organization of: ProteoWizard
is parent organization of: Maltcms
is parent organization of: multiplierz
is parent organization of: ADTEx
is parent organization of: MatNMR
is parent organization of: GSim
is parent organization of: RASP
is parent organization of: TE-locate
is parent organization of: FIGG
is parent organization of: DIYA
is parent organization of: MrBayes
is parent organization of: Fastphylo
is parent organization of: PhyloTreePruner
is parent organization of: SNP ratio test
is parent organization of: FingerID
is parent organization of: proTRAC
is parent organization of: HopeMap
is parent organization of: SketchEl
is parent organization of: GLARE
is parent organization of: MCDL
is parent organization of: NetMODE
is parent organization of: Toxtree
is parent organization of: Toxmatch
is parent organization of: Viewmol
is parent organization of: QuteMol
is parent organization of: PBJelly
is parent organization of: SAM format
is parent organization of: COBRApy
is parent organization of: ORCA
is parent organization of: Bionotate
is parent organization of: Knowtator
is parent organization of: MMAX2
is parent organization of: LAITOR
is parent organization of: Connecting Overlapped Pair-End reads
is parent organization of: iPapers
is parent organization of: PyPedal
is parent organization of: miRPlant
is parent organization of: Simulate PCR
is parent organization of: Scalpel
is parent organization of: SAT-Assembler
is parent organization of: diCal-IBD
is parent organization of: MToolBox
is parent organization of: ReviSTER
is parent organization of: Ionwinze
is parent organization of: VirVarSeq
is parent organization of: GeneVenn
is parent organization of: Pegasus-fus
is parent organization of: GenoSIGHT
is parent organization of: ISDTool
is parent organization of: cnvCapSeq
is parent organization of: EC2KEGG
is parent organization of: eALPS
is parent organization of: LDx
is parent organization of: PLEK
is parent organization of: NAIL
is parent organization of: iMSAT
is parent organization of: PrimerProspector
is parent organization of: NESmapper
is parent organization of: DHAC
is parent organization of: Musite
is parent organization of: PhosphoSiteAnalyzer
is parent organization of: xMSanalyzer
is parent organization of: A5-miseq
is parent organization of: CNV Workshop
is parent organization of: EXCAVATOR-tool
is parent organization of: Krona
is parent organization of: Trowel
is parent organization of: Acacia
is parent organization of: miRDeep*
is parent organization of: CloudAligner
is parent organization of: ProbeSelect
is parent organization of: SeqGenome Browser
is parent organization of: KungFq
is parent organization of: SAMZIP
is parent organization of: EDNA
is parent organization of: MSAProbs
is parent organization of: Onco-STS
is parent organization of: ChIPOTle Peak Finder
is parent organization of: NxGview
is parent organization of: BSmapper
is parent organization of: Flexbar
is parent organization of: QcReads
is parent organization of: HECTOR
is parent organization of: SHREC
is parent organization of: hiCtools
is parent organization of: Swift
is parent organization of: TraceTuner
is parent organization of: seqMINER
is parent organization of: MIREAP
is parent organization of: miRDeep-P
is parent organization of: ncPRO-seq
is parent organization of: vcf2MSAT
is parent organization of: SAMMate
is parent organization of: FishingCNV
is parent organization of: NGSpeAnalysis
is parent organization of: Bamformatics
is parent organization of: IBDLD
is parent organization of: HATS
is parent organization of: SolSNP
is parent organization of: Trinity
is parent organization of: SNPTools
is parent organization of: MendelScan
is parent organization of: LoFreq
is parent organization of: GENE-counter
is parent organization of: RNA CoMPASS
is parent organization of: VCAKE
is parent organization of: LOCAS
is parent organization of: Contrail
is parent organization of: AMOS
is parent organization of: VDJFasta
is parent organization of: RDP FrameBot
is parent organization of: Celera Genome Browser
is parent organization of: AutoMap
is parent organization of: DSP
is parent organization of: Neuroimaging in Python
is parent organization of: cnvHiTSeq
is parent organization of: Easyfig
is parent organization of: bisReadMapper
is parent organization of: palfinder
is parent organization of: sam comp
is parent organization of: CongrPE
is parent organization of: CallSim
is parent organization of: Tuxedo
is parent organization of: SAPAS
is parent organization of: iso2mesh
is parent organization of: Telescoper
is parent organization of: HeurAA
is parent organization of: CoNIFER
is parent organization of: DynamicProg
is parent organization of: SOCS
is parent organization of: BEADS
is parent organization of: miRSeqNovel
is parent organization of: PIA
is parent organization of: ChimeraSlayer
is parent organization of: RDXplorer
is parent organization of: SeqTRACS
is parent organization of: Crossbow
is parent organization of: Hanalyzer
is parent organization of: QUAST
is parent organization of: Drosophila anatomy and development ontologies
is parent organization of: Diffusion Tensor Imaging ToolKit
is parent organization of: OLORIN
is parent organization of: NovelSeq
is parent organization of: SobekCM
is parent organization of: NEMO Ontology
is parent organization of: Mindtouch DekiWiki
is parent organization of: MGED Ontology
is parent organization of: SPInDel
is parent organization of: LMAT
is parent organization of: VariationHunter
is parent organization of: G-BLASTN
is parent organization of: T-lex
is parent organization of: SeqAnt
is parent organization of: PAZAR
is parent organization of: CUSHAW
is parent organization of: TMAJ
is parent organization of: Manatee
is parent organization of: HOLLOW
is parent organization of: OWL API
is parent organization of: Bioelectromagnetism Matlab Toolbox
is parent organization of: Predictive Networks
is parent organization of: Centroid Trajectory Analysis
is parent organization of: PowerMap
is parent organization of: BarraCUDA
is parent organization of: FastSemSim
is parent organization of: Wisconsin White Matter Hyperintensities Segmentation Toolbox
is parent organization of: ArrayOligoSelector
hosts: Batman-Seq
nlx_38463 SCR_004365 SciCrunch Registry 2026-09-26 02:17:07 923
Glyco3D
 
Resource Report
Resource Website
1+ mentions
Glyco3D (RRID:SCR_003797) Glyco3D data or information resource, database A family of databases covering the 3D features of monos, di, oligo, polysaccharides, glycosyltransferases, lectins, monoclonal antibodies and glycosaminoglycan-binding proteins. Other databases are also made available that completes the picture of glycan 3D structure decoding. that are made freely available to the scientific community. A search engine has been developed that scans the full content of all the data bases for queries related to sequential information of the carbohydrates or other related descriptors. This database ensemble offers a unique opportunity to characterize the 3D features that a given oligosaccharide can assume in different environments. carbohydrate, monosaccharide, disaccharide, oligosaccharide, polysaccharide, glycosyltransferase, lectin, monoclonal antibody, glycosaminoglycan-binding protein uses: Jmol PMID:25753716 nlx_158094 SCR_003797 SciCrunch Registry 2026-09-26 02:18:17 7
SoftCite
 
Resource Report
Resource Website
SoftCite (RRID:SCR_024411) data or information resource, knowledge base, portal, project portal, software resource Gold standard dataset of software mentions in research publications. Provides dataset of annotated software mentions from full text academic literature in biomedicine and economics directly converted from published PDFs with reproducible infrastructure. Includes provenance, and is formatted for immediately usefulness in NLP. Useful for supervised learning at scale. Gold standard dataset, software mentions, research publications, annotated software mentions, full text academic literature, lists: ProteinPilot
lists: ROCit
lists: survivalROC
lists: GIFT
lists: PyWavelets
lists: pRRophetic
lists: GOplot
lists: Rgdal
lists: riskRegression
lists: RNAfold
lists: RNALocate
lists: pyPCcazip
lists: ScanProsite
lists: RapGreen
lists: ABySS
lists: AMBER
lists: ANNOVAR
lists: ASAP
lists: ASPicDB
lists: AStalavista
lists: ATSAS
lists: Alien hunter
lists: Adobe Photoshop
lists: Affymetrix
lists: Augustus
lists: Argus
lists: Adobe Illustrator
lists: ART
lists: AutoDock Vina
lists: AutoDock
lists: ANALYZE
lists: BLASTClust
lists: arrayQualityMetrics
lists: BLASTN
lists: BLASTX
lists: BLASTP
lists: Bowtie
lists: Autogrid
lists: BRB-ArrayTools
lists: BEDTools
lists: BWA
lists: BioEdit
lists: BRASS
lists: Bioconductor
lists: BioExtract
lists: BaCelLo
lists: BioMoby
lists: Brain Extraction Tool
lists: Bowtie 2
lists: BoxPlotR
lists: biomaRt
lists: BioPerl
lists: CANGS
lists: CFX Manager
lists: CEAS
lists: BlobFinder
lists: CLC Genomics Workbench
lists: BREAKDANCER
lists: CASAVA
lists: CLC Main Workbench
lists: ClustalW
lists: Clustal W2
lists: ComBat
lists: CCP4
lists: Blender
lists: Coot
lists: CGView
lists: COMSOL Multiphysics
lists: CTFFIND
lists: CalcuSyn
lists: ChIPpeakAnno
lists: Chimera
lists: CVODE
lists: DAVID
lists: Cufflinks
lists: caret
lists: ClueGO
lists: Cluster
lists: Clocklab
lists: DIANA-mirPath
lists: Cytoscape
lists: EMAN
lists: E-Prime
lists: DESeq2
lists: Definiens Developer XD
lists: Eigensoft
lists: EMBOSS
lists: Ensembl
lists: DIALIGN
lists: Design-Expert
lists: EndNote
lists: CMAP
lists: EEGLAB
lists: CMap
lists: Epi Info
lists: FASTA
lists: Ensembl Genome Browser
lists: Epik
lists: FACS
lists: FCS Express
lists: Flowlogic
lists: FSL
lists: FLASH
lists: FATCAT
lists: FastQC
lists: G*Power
lists: GOLD
lists: FGENESH
lists: FreeSurfer
lists: FlowJo
lists: GeneTools
lists: Galaxy
lists: GATK
lists: ELDA
lists: GraphPad
lists: GRADEpro
lists: Fiji
lists: Gblocks
lists: FigTree
lists: GENIE
lists: GBrowse
lists: Gemma
lists: GeneChip Operating Software
lists: GeneMapper
lists: GeneMarker
lists: GenABEL
lists: GenePattern
lists: GraphPad Prism
lists: GenePix Pro
lists: Google
lists: Genesis
lists: Hologic
lists: GeneSpring GX
lists: GeneVenn
lists: HaploReg
lists: Google Scholar
lists: HALO
lists: Gwyddion
lists: IMAGIC
lists: HKL-2000
lists: Glide
lists: Glimmer
lists: I-TASSER
lists: GenomeStudio
lists: IMOD
lists: Haploview
lists: Hmmer
lists: Hydra
lists: IUPRED
lists: HomeCageScan
lists: Geneious
lists: IGOR Pro
lists: IMPUTE
lists: Infernal
lists: Image-Pro Plus
lists: JASP
lists: LSM Image Examiner
lists: Imaris
lists: Image Pro Plus
lists: ImageQuant
lists: ImageJ
lists: Integrative Genomics Viewer
lists: jcvi
lists: InterProScan
lists: KaleidaGraph
lists: Ligprep
lists: Heidelberg Eye Explorer
lists: JMP
lists: Ingenuity Pathways Knowledge Base
lists: Leica QWin
lists: JCB DataViewer
lists: Jalview
lists: LigandScout
lists: Ingenuity Pathway Analysis
lists: LabView
lists: Kepler
lists: MAFFT
lists: Jmol
lists: ImageScope
lists: MACS
lists: Maq
lists: MUMmer
lists: MATLAB
lists: Mimics
lists: MACH
lists: MCODE
lists: Mascot
lists: Maestro
lists: MSQuant
lists: MediaWiki
lists: MINC
lists: MRIcron
lists: MOE
lists: ModFit LT
lists: LIMMA
lists: MassLynx
lists: mitopred
lists: MrBayes
lists: MolProbity
lists: MUSCLE
lists: MutationAssessor
lists: MaxQuant
lists: Minitab
lists: MODELLER
lists: MetaboAnalyst
lists: MedCalc
lists: Origin
lists: MPlus
lists: MutationTaster
lists: MuTect
lists: Multi Gauge
lists: NIA Array Analysis
lists: NIH Image
lists: Phenix
lists: MycoBank
lists: OpenClinica
lists: Nexus
lists: OMTools
lists: NIS-Elements
lists: PAST
lists: NVivo
lists: PRISM (Stanford database)
lists: Metscape
lists: PROCHECK
lists: oligo
lists: OpenEpi
lists: Pathway Commons
lists: Nanoparticle Tracking Analysis
lists: Openlab
lists: PLINK
lists: PAUP
lists: NONMEM
lists: PREFAB
lists: NetworkX
lists: PeptideProphet
lists: Primer Designer
lists: PhyML
lists: PASS
lists: PyMOL
lists: PSIPRED
lists: PROFILER
lists: PHYLIP
lists: Phobius
lists: Prime
lists: Phyutility
lists: Picard
lists: ProteinProphet
lists: Phaser
lists: ProSAS
lists: PostgreSQL
lists: Primer-BLAST
lists: ProteinLynx Global Server
lists: QUANTO
lists: Primer Express
lists: Primer3Plus
lists: ProtTest
lists: ProbCons
lists: Primer3
lists: Poretools
lists: Protein preparation Wizard
lists: QmRLFS-finder
lists: PicTar
lists: RevMan
lists: Pipeline Pilot
lists: QIIME
lists: PRISMA
lists: REDCap
lists: RAxML
lists: Proteome Discoverer
lists: Research Randomizer
lists: SPARTAN
lists: SPSS
lists: RNAstructure
lists: Refmac
lists: QuantPrime
lists: Prodigal
lists: RepeatModeler
lists: Ringo
lists: SQLite
lists: SAGE
lists: Rhinoceros
lists: SAMTOOLS
lists: SPAdes
lists: RepeatMasker
lists: SEDFIT
lists: STATISTICA
lists: RNAhybrid
lists: SlideBook
lists: STRUCTURE
lists: SABmark
lists: SPM
lists: Stata
lists: RStudio
lists: SciPy
lists: Scion Image
lists: Simulink
lists: TAGGER
lists: TopHat
lists: SAM
lists: ShortRead
lists: SIFT
lists: SCAN
lists: SignalP
lists: Scopus
lists: Strelka2
lists: Trans-ABySS
lists: Statgraphics Centurion
lists: T-Coffee
lists: Statistical Analysis System
lists: TargetScan
lists: UCHIME
lists: Sequencher
lists: SigmaStat
lists: UCSC Genome Browser
lists: affy
lists: Taverna
lists: MBF BioScience: Stereo Investigator
lists: Trimmomatic
lists: Vmatch
lists: WFU PickAtlas
lists: SigmaPlot
lists: X!Tandem
lists: STAR
lists: TASSEL
lists: SyStat
lists: WEBLOGO
lists: UCSF Chimera
lists: TreeView
lists: pheatmap
lists: WinWCP
lists: microRNA.org
lists: glmnet
lists: Phenix.refine
lists: BASE
lists: beadarray
lists: RMS
lists: lumi
lists: Web of Science
lists: minfi
lists: geNORM
lists: WU-BLAST
lists: WinBUGS
lists: SPP
lists: tRNAscan-SE
lists: WebPlotDigitizer
lists: qBasePLUS
lists: Matplotlib
lists: TreeBASE
lists: pClamp
lists: TBLASTN
lists: igraph
lists: V3D
lists: survival
lists: miRanda
lists: piRNABank
lists: topGO
lists: NGmerge
lists: OMNISEC
lists: NOTUNG
lists: OpenBUGS
lists: Optimization Toolbox
lists: ProgRes Capture Pro
lists: Ocular
lists: Umediation
lists: Nano Measurer
lists: PHYLDOG
lists: VSEARCH
lists: WinNonlin
lists: WHONET
lists: ToposPro
lists: Treerecs
lists: Agilent Seahorse Wave
lists: SimPhy
lists: TomoStudio
lists: Mutation Assessor
lists: Stem
lists: SRAMP
lists: CRISPResso2
lists: geepack
lists: Evalue
lists: DAGitty
lists: FastMulRFS
lists: ggridges
lists: gamm4
lists: AutoRT
lists: CopyKAT
lists: Inference of CRISPR Edits
lists: classInt
lists: ASTRAL-Pro
lists: maftools
lists: mitml
lists: CMplot
lists: MetaPSICOV
lists: LaCyTools
lists: MADOKA
lists: Kaplan Meier Plotter
lists: IntFOLD
lists: ModFOLD
lists: lDDT
has parent organization: University of Texas at Austin; Texas; USA
Sloan Foundation DOI:10.1002/asi.24454 Free, Available for download, Freely available https://github.com/softcite/softcite_dataset_v2, https://zenodo.org/record/7995565 SCR_024411 SciCrunch Registry Software Citation 2026-09-26 02:17:35 0

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