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URL: http://bionerds.sourceforge.net/
Proper Citation: bioNerDS (RRID:SCR_006784)
Description: A named entity recognizer for the recovery of bioinformatics databases and software from primary literature. The entity recognizer achieved an F-measure of between 63% and 91% on different datasets (63%78% at the document level). Results from full-text literature analysis for both Genome Biology and BMC Bioinformatics journals are available as well as a full list of references and links for the various major resources mentioned. Data generated data can be used for exploration of bioinformatics database and software usage. This tool makes heavy use of GATE (version 6.1). It can be run in sandbox mode, which means a installation of GATE is not a prerequisite, but you will instead need to point the config to a unzipped gate_plugins directory instead (located in the bin/BMC_Files directory).
Abbreviations: bioNerDS
Synonyms: Bioinformatics Named Entity Recognizer for Databases and Software, Bioinformatics Named Entity Recogniser for Databases and Software
Resource Type: source code, software application, text-mining software, data set, data or information resource, software resource
Defining Citation: PMID:23768135
Keywords: literature mining, bioinformatics, database, software, resource
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Source: SciCrunch Registry
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