MarsBaR region of interest toolbox for SPM
Resource Report
Resource Website
1000+ mentions
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MarsBaR region of interest toolbox for SPM (RRID:SCR_009605)
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MarsBaR
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data processing software, software application, software resource, software toolkit
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A toolbox for SPM which provides routines for region of interest analysis. Features include region of interest definition, combination of regions of interest with simple algebra, extraction of data for regions with and without SPM preprocessing (scaling, filtering), and statistical analyses of ROI data using the SPM statistics machinery.
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analyze, linear, matlab, magnetic resonance, nifti, os independent, regression, statistical operation, region of interest, spm, analysis
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is used by: BetA-Series COrrelation is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: SPM has parent organization: SourceForge
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GNU General Public License |
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nlx_155806 |
http://www.nitrc.org/projects/marsbar |
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SCR_009605 |
MARSeille Boite A Region dInteret, MARSeille Boite a Region dInteret |
2026-08-21 12:38:47 |
1320 |
SPM
Resource Report
Resource Website
5000+ mentions
Issue
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SPM (RRID:SCR_007037)
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SPM
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data analysis software, data processing software, image analysis software, software application, software resource
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Software package for analysis of brain imaging data sequences. Sequences can be a series of images from different cohorts, or time-series from same subject. Current release is designed for analysis of fMRI, PET, SPECT, EEG and MEG.
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analysis, brain, imaging, data, sequence, fMRI, PET, SPECT, EEG, MEG, bio.tools
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uses: Neuroimaging Data Model uses: imcalc: SPM batch image calculator is used by: rsfMRI_fconn calculation is used by: Automatic Analysis is used by: auto_acpc_reorient is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: 3DVC is listed by: Debian is listed by: bio.tools is listed by: SoftCite is affiliated with: Clinical Toolbox for SPM is affiliated with: Statistical non-Parametric Mapping is related to: WFU Biological Parametric Mapping Toolbox is related to: vis: SPM Visualized Statistics toolbox is related to: LEAD-DBS is related to: CCHMC Pediatric Brain Templates is related to: IBMA toolbox is related to: ArtRepair for robust fMRI is related to: ASL data processing tool box is related to: BrainVISA / Anatomist is related to: MRIcro Software is related to: xjView: A Viewing Program For SPM is related to: BrainMagix SPM Viewer is related to: MarsBaR region of interest toolbox for SPM is related to: NIRS-SPM is related to: SPM SS - fMRI functional localizers is related to: Wisconsin White Matter Hyperintensities Segmentation Toolbox is related to: Dementia-specific FDG PET Template for SPM analyses is related to: SPM Anatomy Toolbox is related to: MIPAV: Medical Image Processing and Visualization is related to: MATLAB is related to: hMRI-toolbox is related to: Sandwich Estimator Toolbox has parent organization: University College London; London; United Kingdom is required by: MRTool provides: TSDiffAna has plug in: ICN_Atlas works with: UManitoba - JHU Functionally Defined Human White Matter Atlas works with: NIAG Addiction Data works with: ICN_Atlas works with: spm_auto_reorient_coregister works with: Computational Anatomy Toolbox for SPM works with: FieldTrip works with: POAS4SPM
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Free, Available for download, Freely available |
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biotools:SPM |
https://github.com/spm/spm12, https://bio.tools/SPM |
https://www.fil.ion.ucl.ac.uk/spm/ |
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SCR_007037 |
Statistical Parametric Mapping, SPM5, SPM2, SPM12, Statistical Parametric Mapping Software, SPM99, SPM8, SPM, SPM96 |
2026-08-21 12:38:08 |
8748 |
NeuroImaging Tools and Resources Collaboratory (NITRC)
Resource Report
Resource Website
100+ mentions
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NeuroImaging Tools and Resources Collaboratory (NITRC) (RRID:SCR_003430)
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NITRC
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community building portal, data or information resource, data repository, portal, service resource, software repository, software resource, storage service resource
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Software repository for comparing structural (MRI) and functional neuroimaging (fMRI, PET, EEG, MEG) software tools and resources. NITRC collects and points to standardized information about structural or functional neuroimaging tool or resource.
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collaboration, information, resource, structural, functional, neuroimaging, MRI, fMRI, EEG, MEG, PET
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is used by: NIF Data Federation is used by: Consortium for Reliability and Reproducibility is used by: DataLad is recommended by: National Library of Medicine lists: Dipy lists: 3DMeshMetric lists: MPScope lists: VectorValuedHistogramNormalizer lists: Faceted Search Based Ontology Visualizer lists: Morphometry BIRN lists: Colin 3T/7T High-resolution Atlas lists: CMFreg lists: BrainFX lists: dinifti lists: Center for Computational Biology at UCLA lists: Convert MNI coordinates to or from XYZ lists: Licensing issues in software and data lists: Local Binary Pattern Analysis Tools for MR Brain Images lists: MIView lists: uManager lists: Penn Hippocampus Atlas lists: RapidArt lists: Scribe lists: ShapeWorks lists: Vervet Probabilistic Atlas lists: Talairach Daemon lists: ADHD-200 Preprocessed Data lists: LORIS - Longitudinal Online Research and Imaging System lists: NVM lists: Maps4Mipav (Exploratory JIST) lists: Autism Tissue Program lists: MEG Tools lists: PyNIfTI lists: LONI Visualization Tool lists: Mind Research Network - COINS lists: OpenElectrophy lists: CIFTI Connectivity File Format lists: 3DSlicerLupusLesionModule lists: BrainNetworkConstructionAnalysisPlatform lists: COMPARE lists: Data Format Tools lists: GesTr lists: I/OWA lists: MINC Example files lists: cbiNifti: Matlab/Octave Nifti library lists: BRAINSCut lists: C-PAC lists: Connectir lists: DicomBrowser lists: Hitachi Optical Topography System lists: Net Station API lists: imcalc: SPM batch image calculator lists: BRAINSCortex lists: Insight Segmentation and Registration Toolkit lists: LONI Debabeler lists: LONI Pipeline Processing Environment lists: NiLearn lists: MRI Studio lists: BraVa lists: Brede Wiki lists: Center for Functional Neuroimaging Technologies lists: Philips Users Community lists: medInria lists: Beijing: Eyes Open Eyes Closed Study lists: vIST/e lists: Camino lists: Diffusion Tensor Imaging ToolKit lists: TORTOISE lists: NIDAG: Neuroimaging Data Access Group lists: MRI CVPR lists: vuTools lists: Medical Image Processing and Visualization in Virtual Environments lists: Brainstorm lists: Atlas3D lists: FMRISTAT - A general statistical analysis for fMRI data lists: FreeSurfer lists: Rosetta Bit lists: Laboratory of Neuro Imaging lists: Group ICA of fMRI Toolbox lists: Hierarchical Attribute Matching Mechanism for Elastic Registration lists: Internet Brain Segmentation Repository lists: Neural ElectroMagnetic Ontologies (NEMO) Project lists: Wavelet-based Image Fusion lists: ITK-SNAP lists: Internet Brain Volume Database lists: Statistical non-Parametric Mapping lists: VoxBo lists: NITRC Computational Environment lists: Spatially Constrained Parcellation lists: Cluster reporter lists: Cluster Extent Correction lists: 4D Atlases Construction lists: CIGAL lists: CleanLine lists: Computational Morphometry Toolkit lists: Cognitive Paradigm Ontology lists: aBEAT lists: MR Connectome Automated Pipeline lists: International Neuroinformatics Coordinating Facility lists: Functional Regression Analysis of DTI Tract Statistics lists: MCIC lists: MGDM: Multi Geometric Deformable Model lists: MIAS Registration Toolkit lists: Medical Image Visualization and Analysis lists: Microstructural correlation toolbox lists: MisterI lists: MriWatcher lists: Multiple Correlation Function Tool lists: NITRC Community Conferences Workshops and Meetings lists: BRAINSFit lists: INCF Software Center lists: BrainVision Analyzer lists: COGNISION lists: DPARSF lists: GLIRT lists: MINC lists: Group Level Imputation of Statistic Maps lists: MRIcron lists: Inter-Group Registration Toolbox lists: MCML and CONV lists: MEGSIM lists: MIRIAD lists: MRI Defacer lists: MS lesion segmentation challenge 2008 lists: Measure Projection Toolbox lists: Mindboggle lists: Mindboggle-101 atlases lists: ModelGUI lists: Multi-Modal MRI Reproducibility Resource lists: MultiTracer lists: Multicomponent T2 estimation with stimulated echo correction lists: NCANDA: Data Integration Component lists: NFT lists: Net Station EEG Software lists: Network Based Statistic Toolbox lists: NeuroScope lists: Numerical Fibre Generator lists: PSTNet: MRI Simulator lists: cortex lists: iBEAT lists: M3 lists: Group ICA Of EEG Toolbox lists: 4D-PARSeR Pathological Anatomy Regression via Segmentation and Registration lists: Automatic Segmentation Tool Adapter lists: DTI-TEMPLATE-RHESUS-MACAQUES lists: LONI Provenance Editor lists: MNI N3 lists: MRI Digital Projection System lists: NIDB - Neuroinformatics Database lists: NIPY lists: NIRAL Utilities lists: NIRx NIRS Neuroimaging lists: NIRx2nirs: A NIRx to .nirs data converter lists: NITRC Enhanced Services lists: NITRC GForge Extensions lists: NPTK lists: NeuroImaging Analysis Kit (NIAK) lists: NiBabel lists: NiftyRec lists: Nipype lists: Nirfast lists: Nitime lists: Non-Rigid Image Registration Evaluation Project lists: Normative Independent Component Analysis lists: OEI: fMRI compatible olfactometer lists: ORS Visual SI lists: OpenMEEG lists: PANDA lists: PESTICA fMRI Physio Detection/Correction lists: PHYCAA+: adaptive physiological noise correction for BOLD fMRI lists: ParaView lists: Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR) lists: Presentation lists: PySurfer lists: Pythagorean Displacement and Motion Regressors lists: Quantitative Diffusion Tools lists: R-package for adaptive DWI analysis lists: R-package for adaptive fMRI analysis lists: REX lists: RFT FDR lists: ROBEX lists: RT Image lists: Resource Ontology Discussion Group lists: Rodent Brain Extraction Tool lists: Rodent Cortical Thickness Analysis lists: S-rep Fitting Statistics and Segmentation lists: SCIRun lists: SCRalyze lists: SOCK lists: SPHARM-MAT lists: SPHARM-PDM Toolbox lists: SRI24 Atlas: Normal Adult Brain Anatomy lists: Seg3D lists: ShapeComplexAtlas lists: Signed Differential Mapping lists: Sleuth lists: Slice:Drop lists: Slicer3 Example Modules lists: Source Information Flow Toolbox lists: Spanish Resting State Network lists: Spatial Analysis 3D lists: Stereoscopic Atlas of Intrinsic Brain Networks lists: UNC Infant 0-1-2 Atlases lists: UNC Primate Brain Atlas lists: XCEDE Schema lists: peak nii lists: pydicom lists: pyxnat lists: scikit-learn lists: shapeAnalysisMANCOVA - SPHARM tools lists: VMTK in 3D Slicer lists: 3D Interactive Chemical Shift Imaging lists: BRAINSSurfaceStats lists: Brain lesion segmentation tool using SVM lists: Diffusion Tractography with Kalman Filter lists: Fast Nonlocal Means for MRI denoising lists: Monte Carlo Simulation Software: tMCimg lists: Web Interfaces for Multiscale Images lists: STAPLE lists: Segmentation Validation Engine lists: Spatial Statistical Parametric Mapping lists: SpineSegmentation module for 3DSlicer lists: Stochastic Tractography System lists: Subject Library lists: TAPIR lists: TARQUIN lists: Template Image Processing Library lists: TetraMetrix lists: TractoR: Tractography with R lists: Triangle BioSystems lists: TumorSim lists: TurtleSeg lists: UNC Human Brain Atlas lists: VR Worlds 2 lists: Vaa3D lists: ValMap: simple statistical mapping tool lists: WFU Biological Parametric Mapping Toolbox lists: WFU Pipeline lists: Working Memory Trainer lists: vis: SPM Visualized Statistics toolbox lists: Synchronized Histological Image Viewing Architecture lists: LONI ShapeViewer lists: LONI ShapeTools lists: FFT Library lists: Automated recognition of brain region mentions in neuroscience literature. lists: NUTMEG lists: Cognitive Atlas lists: Mouse BIRN Atlasing Toolkit lists: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat lists: FSL lists: LEAD-DBS lists: Brainscape lists: EONS lists: BioImage Suite lists: ADNI - Alzheimer's Disease Neuroimaging Initiative lists: MindSeer lists: XNAT - The Extensible Neuroimaging Archive Toolkit lists: brainmap.org lists: ImageJ lists: Neuroimaging Informatics Technology Initiative lists: IMOD lists: Statistics Online Computational Resource lists: signalml.org lists: Mouse Biomedical Informatics Research Network lists: NIH MRI Study of Normal Brain Development lists: MGH-USC Human Connectome Project lists: Fusion ICA Toolbox lists: Corpus Callosum Thickness Profile Analysis Pipeline lists: ABIDE lists: Mouse Connectome Project lists: NITRC-IR lists: Open Connectome Project lists: neurodebian lists: NIMH Data Archive lists: ANTS - Advanced Normalization ToolS lists: XNAT Extras lists: TrackVis lists: Brain Connectivity Toolbox lists: FieldTrip lists: LONI Inspector lists: BrainLiner lists: OpenNeuro lists: Biomedical Informatics Research Network lists: McConnell Brain Imaging Center MNI Macaque Atlas lists: SINOMO lists: DONE: Detection of Outlier NEurons lists: Neuro Bureau lists: ADHD-200 Sample lists: 1000 Functional Connectomes Project lists: PubBrain lists: CBRAIN lists: ENIGMA: Enhancing Neuro Imaging Genetics Through Meta-Analysis lists: Bisque lists: 3D Slicer lists: Internet Analysis Tools Registry lists: Neuromorphometrics lists: Analysis of Functional NeuroImages lists: Automated Image Registration lists: BASH4RfMRI lists: MNE software lists: Object-Oriented Development Interface for NMR lists: NYU CSC TestRetest lists: Optseq - fMRI Event Scheduler lists: TOADS-CRUISE Brain Segmentation Tools lists: MouseTracker lists: Hammer And WML Modules for 3D Slicer lists: ABC (Atlas Based Classification) lists: Allen Brain Atlas API lists: Viking Viewer for Connectomics lists: ARCTIC lists: ArtRepair for robust fMRI lists: Automatic Registration Toolbox lists: Artifact Detection Tools lists: Segmentation of Hippocampus Subfields lists: ASL data processing tool box lists: Bioelectromagnetism Matlab Toolbox lists: PyMVPA lists: Human Imaging Database lists: BrainImage Software lists: Brede Toolbox lists: Computerized Anatomical Reconstruction and Editing Toolkit lists: BrainColor: Collaborative Open Labeling Online Resource lists: Registry Builder Data Harmonization and Aggregation Tool lists: PsychoPy lists: NiftySim lists: NiftyReg lists: Neurobiological Image Management System lists: BRAINSTools lists: MeshValmet: Validation Metric for Meshes lists: BrainSuite lists: DW-MRI Random Walk Simulator lists: Web Game for Collaborative Labeling lists: BrainVoyager Brain Tutor lists: POLGUI - Matlab Polhemus Interface lists: BrainVoyager Brain Viewer lists: NeuroPub Visualizer lists: NODDI Matlab Toolbox lists: MITK Diffusion lists: Federal Interagency Traumatic Brain Injury Research Informatics System lists: BrainMaps.org lists: PRoNTo lists: Scalable Brain Atlas lists: NIH Human Connectome Project lists: Mesh-based Monte Carlo (MMC) lists: Matlab Neuroshare Library lists: MRtrix lists: MABMIS: Multi-Atlas Based Multi-Image Segmentation lists: Monte Carlo eXtreme lists: Whole Brain Catalog lists: BCILAB lists: ABSORB: Atlas Building by Self-Organized Registration and Bundling lists: VAMCA lists: SPM lists: Low Resolution Electromagnetic Tomography lists: SurfStat lists: Cambridge Brain Activation lists: CLEAVE lists: CoCoMac lists: fMRI Data Center lists: Function BIRN lists: EEGLAB lists: BrainVISA / Anatomist lists: MIPAV: Medical Image Processing and Visualization lists: NeuroLens lists: WFU PickAtlas lists: Open Access Series of Imaging Studies lists: BioSig: An Imaging Bioinformatics System for Phenotypic Analysis lists: xjView: A Viewing Program For SPM lists: Human Connectome Coordination Facility lists: ASL spm8 lists: Integrated Manually Extracted Annotation lists: JIST: Java Image Science Toolkit lists: Functional Analysis of Diffusion Tensor lists: AHEAD lists: ANTsR lists: 3DBar lists: Cancer Imaging Archive (TCIA) lists: Pediatric Imaging Neurocognition and Genetics lists: Atlasing of the basal ganglia lists: cmrep lists: 3D DTI Atlas of the Rat Brain In Postnatal Day 5 14 and Adulthood lists: AutoSeg lists: BXH/XCEDE Tools lists: Baby Brain Toolkit lists: Best Practices for Software Development lists: Brain Catalogue lists: Draw3D and Meshinator lists: Brain Segmentation Testing Protocol lists: BrainNet Viewer lists: BrainSolution lists: Brainvox lists: C8: Corpus Callosum Computations lists: CAMINO-TRACKVIS lists: CANDI Share: Schizophrenia Bulletin 2008 lists: CBS High-Res Brain Processing Tools lists: CCSeg - Corpus Callosum Segmentation lists: Cerebral Blood Flow Database and Analysis Pipeline lists: Create DWI Atlas lists: DFBIdb lists: DIAMOND lists: DICOM UploadGUI lists: DOTS WM tract segmentation lists: DTI Fiber Tract Statistics lists: DW-MRI registration in FSL lists: DbGaP Cleaner lists: DentalTools lists: Diffusion MRI - In-vivo and Phantom Data lists: Diffusion MRI at DKFZ Heidelberg lists: Diffusion Warp lists: Disease State Prediction lists: EEG human categorization data lists: Epsilon Radial Networks lists: FBIRN Image Processing Scripts lists: FSL extensions lists: False Discovery Rate Weighted lists: Fiber Tracking Tool lists: Fiber-tracking based on Finsler distance lists: FiberViewerLight lists: Finsler tractography module for Slicer lists: Fluid Registration and Atlas Toolkit lists: Framework for Open Programmatic Access lists: Functional Connectivity Community lists: Functional ROI Atlas lists: Functional and Structural Neuroimaging Journals Listing lists: GAMBIT lists: GAMMA lists: BRAINSMush lists: GPU based affine registration lists: GRETNA lists: Generalized Covariance Analysis lists: Generalized PPI Toolbox lists: Group Information Guided ICA lists: Groupwise Image Registration Toolbox lists: HD Neuro-Informatics lists: Hitachi2nirs lists: IDeA Lab brain image processing suite lists: INCF Neuroimaging Data Sharing lists: INIA19 Primate Brain Atlas lists: JHU Proj. in Applied Medical Imaging lists: JIST Resources for Algorithm Development lists: BRAINSROIAuto lists: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI lists: Landman NeuroImaging Tools lists: Local Label Learning Segmentation lists: MASI Label Fusion lists: MASIMatlab lists: MATLAB Tutorial on Diffusion Tensor MRI lists: Multi-Echo Independent Component Regression Group-Level Connectivity Dataset lists: Multi-fiber Reconstruction from DW-MRI lists: NITRC Books lists: Network Modification Tool Lite lists: Non-rigid groupwise registration method lists: Rockland Download Link Script lists: Subject Order-Independent Group ICA lists: Task Independent Fluctuations Discussion lists: UNC Human DTI Brain Atlas lists: BRAINSTestData lists: cPPI Toolbox for fMRI lists: fMRI Classification in R lists: fMRI-CPCA lists: fNIRS Data Analysis Environment lists: factory t1 dti lists: BRAINSDemonWarp lists: AMILab lists: ADJUST lists: ALVIN lists: Age Related Atrophy Dataset lists: B0 and eddy current correction for DTI lists: BESA lists: BSMac lists: BVQXtools lists: BioMesh3D lists: BrainBrowser lists: BrainGraph Editor lists: BrainMagix SPM Viewer lists: BrainMask Volume Processing Tool lists: Brainsight lists: Brainwaver lists: CANDI Neuroimaging Access Point lists: CBFBIRN lists: CDF-HC PointSetReg lists: GIMIAS lists: CURRY lists: CalaTK lists: CoCoMac-Paxinos3D viewer lists: INVIZIAN lists: CONN lists: Connectome File Format lists: Connectome Viewer lists: Cytoseg lists: DICCCOL predictor lists: DRAMMS lists: DSI Studio lists: Level-set Segmentation for Slicer3 lists: DTI BrainImageScope lists: DTI-Reg lists: DTIProcess ToolKit lists: DWI/DTI Quality Control Tool: DTIPrep lists: Diffusional Kurtosis Estimator lists: Distributome lists: ImageVis3D lists: E-Prime lists: E-Prime Extensions for fMRI lists: EEGVIS lists: EEProbe lists: EMSE Suite lists: LONI Brain Parser lists: EPILAB lists: ERPLAB lists: FIV lists: FMRIpower lists: Fiber Optic Button Response System lists: Free-D lists: GIFTI lists: GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data lists: HAMMER Suite lists: HERMES lists: HI-SPEED Software Packets lists: Homer2 lists: IIT Human Brain Atlas lists: JIP Analysis Toolkit lists: Jim lists: LDDMM lists: LIBEEP lists: LIMO EEG lists: LONI De-identification Debablet lists: Waxholm Space lists: Lipsia lists: Lumina LP- 400 Response System lists: MRI Dataset for Hippocampus Segmentation lists: MaCH-Admix lists: Mach2dat lists: Mag Design and Engineering lists: MagVenture: MagPro Magnetic Stimulator lists: SR Research EyeLink Eye Trackers lists: Mango lists: Manually Labeled MRI Brain Scan Database lists: MarsBaR region of interest toolbox for SPM lists: MazeSuite lists: MoTrak Head Motion Tracking System lists: NCIGT Fast Imaging Library lists: NeuroWeb - NeuroImaging Database lists: Neuroimaging Made Easy Blog lists: Neurophysiological Biomarker Toolbox lists: SVV lists: Slicer3 Module Rician noise filter lists: UNC/Utah NAMIC DTI Fiber Analysis Framework lists: caGWAS lists: eConnectome lists: elastix lists: fMRI Artefact rejection and Sleep Scoring Toolbox lists: MACH lists: fMRI Grocer lists: fNIR Devices lists: fanDTasia Java Applet: DT-MRI Processing lists: g.BSanalyze lists: iTools lists: iView X MRI-LR - Eye Tracking for fMRI lists: map3d lists: NICE-SIGN lists: NIRS-SPM lists: NITRC Community lists: NordicNeuroLab lists: PICSL Multi-Atlas Segmentation Tool lists: Paradigm lists: Pipeline Neuroimaging VirtualEnvironment lists: Pipeline System for Octave and Matlab lists: ProbabilisticBiasCorrection lists: Program for optimal design of blocked fMRI experiments lists: QCQP lists: REST: a toolkit for resting-state fMRI lists: Robust Biological Parametric Mapping lists: SPM SS - fMRI functional localizers lists: Solar Eclipse Imaging Genetics tools lists: VPixx: VIEWPixx /3D lists: resting-state pediatric imaging template lists: DATAPixx lists: GTRACT lists: Wisconsin White Matter Hyperintensities Segmentation Toolbox lists: COBRE lists: AngioCalc Cerebral Aneurysm Calculator lists: USC Multimodal Connectivity Database lists: BRAINSConstellationDetector lists: ASA - Advanced Source Analysis lists: BRAINSTracer lists: EYE-EEG (combined eye-tracking & EEG) lists: BrainVoyager lists: Mean Machine lists: ERP PCA Toolkit lists: LiverSegm lists: GSA-SNP lists: FastICA lists: DTI Atlas Builder lists: Neuroimaging in Python lists: Brain Decoder Toolbox lists: iso2mesh lists: CUDA-SPHERE-FWD-MEEG lists: BrainCSI lists: BrainVisa Morphology extensions lists: VPixx: VIEWPixx lists: VPixx: PROPixx lists: GenGen lists: MACH 1.0 lists: PennCNV lists: SumsDB lists: Integrated Software lists: NeuroLex lists: Parkinson's Progression Markers Initiative lists: NeuroSynth lists: Textpresso lists: ANNOVAR lists: Graphtools lists: Grantees Meeting for NITRC lists: FP-CIT SPECT brain template in MNI space lists: Brain Computer Interface 2000 Software Package lists: BEAST lists: Brian Simulator lists: Connectome Workbench lists: ConnectomeDB lists: DIAN - Dominantly Inherited Alzheimer Network lists: NKI-RS Enhanced Sample lists: EPILEPSIE database lists: GEneral NEural SImulation System: The Neurospaces Project lists: Hippocampome.org lists: Kitware lists: Kymata Atlas lists: L-Measure lists: MDR lists: neuroConstruct lists: Neurolucida lists: NeuroMorpho.Org lists: NEURON lists: NeuronJ: An ImageJ Plugin for Neurite Tracing and Quantification lists: NeuroVault lists: National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS) lists: NINDS Repository lists: NKI/Rockland Sample lists: ODIN lists: OBART lists: Open Science Framework lists: PLINK lists: MBF BioScience: Stereo Investigator lists: studyforrest.org lists: Virtual brain lists: TREES toolbox lists: APERTURE lists: 3dsvm lists: 7T Structural MRI scans ATAG lists: Atlases of amygdala and hippocampus for pediatric populations lists: BetA-Series COrrelation lists: bic-mni-models lists: BiofilmQuant lists: Biomag Discussion Group on Yahoo lists: Brain Entropy in space and time (BEst) lists: Brainnetome Atlas Viewer lists: Brainnetome fMRI toolkit lists: BROCCOLI lists: C-MIND Database lists: CARLsim: a GPU-accelerated SNN Simulator lists: Clinical Toolbox for SPM lists: CMIND PY lists: COST lists: dcm2nii lists: DICOMConvert lists: Displacement Field Viewer lists: DTI denoising lists: Efficient Longitudinal Upload of Depression in the Elderly (ELUDE) lists: Efficient Permutation Testing lists: DTI-TK lists: ERPwavelab lists: ExPosition Packages lists: Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation lists: Forward: Accurate finite element electromagnetic head models lists: freesurfR lists: Functional Connectivity Analysis Tool for near-infrared spectroscopy data lists: GazeReader lists: gCCA lists: Generation R Pediatric MRI Resources lists: GIMME lists: GLMdenoise: a fast, automated technique for denoising task-based fMRI data lists: GraphVar: A toolbox for comprehensive graph analyses of functional brain connectivity lists: HAMMER: Deformable Registration lists: HBM Hackathon lists: HDBIG lists: High-quality diffusion-weighted imaging of Parkinsons disease lists: MGA - Multimodal Glioma Analysis lists: Image Synthesis Tools lists: Imeka Tractography Service lists: International Imaging Genetics Conference lists: Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.0 lists: Iterative dual-regression with sparse prior lists: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI lists: KWScene: MRML-based Atlas and Scene Builder/Reader/Writer lists: L-Neuron lists: Laplace Beltrami Filter on QuadEdge Meshes lists: libSBML lists: Lightweight Data Pipeline lists: Longitudinal MS Lesion Imaging Archive lists: MARS (Multi-Atlas Robust Segmentation) lists: minc-toolkit lists: minc-toolkit-testsuite lists: MISST - Microstructure Imaging Sequence Simulation ToolBox lists: MRI Neuroanatomy Labeling Services lists: MRIcroS lists: Multivariate General Linear Models (MGLM) on Riemannian Manifolds lists: Neoseg lists: NeoSegPipeline lists: NeuriteTracer lists: NeuroElf lists: Neuron-C lists: NIH Pediatric MRI Data Repository lists: NIH-CIDI Lung Segmentation Tool lists: NiiStat lists: Northwestern University Schizophrenia Data and Software Tool (NUSDAST) lists: Notion ResearchPACS lists: NTU-DSI-122: a DSI template in ICBM-152 space lists: OpenViBE lists: OpenWalnut lists: Orientation Distribution Function in Constant Solid Angle (CSA-ODF) lists: Parkinsons Disease Discovery Database lists: Prediction and Diagnosis for Depression and Schizophrenia lists: Preprocessed Connectomes Project lists: Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data lists: Ruby NIfTI lists: SCORE lists: SFMProject lists: ShapePopulationViewer lists: Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations lists: SPIKECOR: fMRI tool for automated correction of head motion spikes lists: Spinal Cord Toolbox lists: Stark Cross-Sectional Aging lists: Brain Coactivation Map lists: Multiscale Object Orientation Simulation Environment lists: Striatal Subregional VOImap lists: Topographica lists: Turbo-BrainVoyager lists: CRL Unbiased and Deformable Spatiotemporal Atlas of the Fetal Brain lists: UNC-Wisconsin Neurodevelopment Rhesus MRI Database lists: Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX) lists: VMTK in 3D Slicer lists: Wisconsin Cortical Thickness Analysis (CTA) Toolbox lists: XFSL: An FSL toolbox lists: XNBC lists: YMDTI: Diffusion Tensor Images of Healthy Young Males lists: BraTumIA (Brain Tumor Image Analysis) lists: CAWorks lists: Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND) lists: Graph Theory GLM (GTG) MATLAB Toolbox lists: Functional Mixed Processes Models lists: Papaya lists: Parallel Stochastic Ion Channel Simulator lists: Advanced Connectivity Analysis (ACA) lists: International Imaging Genetics Conference lists: Analyze Software System lists: Optseq lists: ENIGMA-DTI Pipeline lists: Umea Brain Arteries lists: MetaSearch lists: BrainBox lists: BluePyOpt lists: MultiXplore lists: Automatic Tractography-based Parcellation Pipeline lists: Epilepsy T1 and Hippocampal Segmentation Datasets lists: Mixed Effect Model of Genetic-Set and Environment Interaction lists: masked ICA (mICA) Toolbox lists: Altered States Database lists: User Friendly Functional Connectivity - UF²C lists: Intra- and inter-scanner reliability of RS-fMRI BOLD and ASL with eyes closed vs. eyes open lists: Region to Region lists: Waxholm Space Atlas of the Sprague Dawley Rat Brain lists: Nutil - Neuroimaging utilities lists: MeshView lists: vini: A viewer for fMRI data lists: brainGraph lists: Diffusion Toolkit lists: Neurodocker lists: HeuDiConv: a heuristic-centric DICOM converter lists: Knowing what you know (kwyk) - Bayesian Brain Parcellation lists: Rhesus Macaque Brain Atlases lists: MIITRA atlas lists: MonkeyCBP lists: ReproNim/containers lists: ReproMan lists: ABCD-ReproNim Course lists: Ventricular Morphometry Analysis System lists: ONPRC18 Multimodal MRI Atlas lists: volBrain lists: Waxholm Space is affiliated with: Manual Align RTS2000 is related to: University of California; San Diego;National Center for Microscopy and Imaging Research - NCMIR has parent organization: Harvard University; Cambridge; United States has parent organization: NIH Blueprint for Neuroscience Research is parent organization of: Licensing issues in software and data is parent organization of: NITRC Enhanced Services is parent organization of: Resource Ontology Discussion Group is parent organization of: NITRC-IR is parent organization of: 1000 Functional Connectomes Project is parent organization of: NYU CSC TestRetest is parent organization of: NITRC Books is parent organization of: NITRC Community is parent organization of: ABIDE is parent organization of: COBRE is parent organization of: Group Sparse Canonical Correlation Analysis is parent organization of: Challenge Competitions Collection is parent organization of: 1000 Functional Connectomes Project
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NIBIB U24 EB023398; NIDA ; NIH Blueprint for Neuroscience Research ; NIMH ; NINDS R44 NS074540 |
PMID:26044860 PMID:18999128 |
Free, Freely available |
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nif-0000-00202, r3d100010784, r3d100011515 |
https://doi.org/10.17616/R3W32N |
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SCR_003430 |
Neuroimaging Informatics Tools and Resources Clearinghouse, , NeuroImaging Tools and Resources Collaboratory, Neuroimaging Informatics Tools Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools and Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools Resources Clearinghouse |
2026-08-21 12:37:09 |
374 |
SourceForge
Resource Report
Resource Website
500+ mentions
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SourceForge (RRID:SCR_004365)
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data access protocol, software resource, web service
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Web based service that offers software developers centralized online location to control and manage free and open source software projects. Open source software tool and business public software platform.
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software, platform, tool, resource, catalog, community, project, , FASEB list
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lists: Clinical Measurement Ontology lists: Measurement Method Ontology lists: CHEBI lists: Fly Taxonomy lists: Software Ontology lists: MIAPA lists: Comparative Data Analysis Ontology lists: SOAPfuse lists: MetAssign lists: Avalon Cheminformatics Toolkit lists: FMAToolbox lists: Multivariate Analysis of Transcript Splicing is related to: Wisconsin White Matter Hyperintensities Segmentation Toolbox is related to: BVA import/export EEGLAB plugin is parent organization of: SP-Designer is parent organization of: BlackOPs is parent organization of: UTR is parent organization of: CG-Pipeline is parent organization of: iMethy is parent organization of: dprimer is parent organization of: Dissect is parent organization of: AbMining ToolBox is parent organization of: siRNArules is parent organization of: MysiRNA-designer is parent organization of: D-Tailor is parent organization of: BioLemmatizer is parent organization of: exomeSuite is parent organization of: Sequence Read Format is parent 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parent organization of: ParticleCall is parent organization of: skewer is parent organization of: CrossMap is parent organization of: Breakway is parent organization of: MUMmerGPU is parent organization of: PHACCS is parent organization of: ChIP-seq is parent organization of: Mutascope is parent organization of: metabnorm is parent organization of: KAnalyze is parent organization of: NGSrich is parent organization of: Mugsy is parent organization of: BACContigEditor is parent organization of: HAPLOPAINTER is parent organization of: PennSeq is parent organization of: DNACLUST is parent organization of: ReCount - A multi-experiment resource of analysis-ready RNA-seq gene count datasets is parent organization of: Ray is parent organization of: openADAM is parent organization of: DMET-Analyzer is parent organization of: SNVer is parent organization of: Cake is parent organization of: Matchprot is parent organization of: NIDB - Neuroinformatics Database is parent organization of: RUbioSeq is parent organization of: SCRalyze is parent organization of: TARQUIN is parent organization of: Rainbow is parent organization of: GLProbs is parent organization of: ANDES is parent organization of: Batch Oligo Selection Script is parent organization of: rDock is parent organization of: Biologic Stylus is parent organization of: MIPE is parent organization of: FAS-DPD is parent organization of: mrsFAST is parent organization of: mrCaNaVaR is parent organization of: SaskPrimerFS is parent organization of: XORRO is parent organization of: SALT is parent organization of: Gemi is parent organization of: Vertebrate Trait Ontology is parent organization of: Xournal is parent organization of: Metabolomics Standards Initiative is parent organization of: SpliCQ is parent organization of: ORFprimer is parent organization of: JCVI Primer Designer is parent organization of: deFuse is parent organization of: Amplicon is parent organization of: PrimerSeq is parent organization of: Niftilib is parent organization of: GEOSS is parent organization of: GEPAT is parent organization of: Jmol is parent organization of: SeqExpress is parent organization of: InsertionMapper is parent organization of: HLASeq is parent organization of: BamView is parent organization of: CB-Commander is parent organization of: Vanator is parent organization of: SnoopCGH is parent organization of: PASHA is parent organization of: USeq is parent organization of: SVMerge is parent organization of: Pythia is parent organization of: Bambus is parent organization of: cortex var is parent organization of: UnoSeq is parent organization of: VFS is parent organization of: ASOoViR is parent organization of: AnnTools is parent organization of: COVA is parent organization of: GESND is parent organization of: ORMAN is parent organization of: SnpEff is parent organization of: HIVCD is parent organization of: QuRe is parent organization of: inGAP is parent organization of: SPLITREAD is parent organization of: (at)Note 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parent organization of: QcReads is parent organization of: HECTOR is parent organization of: SHREC is parent organization of: hiCtools is parent organization of: Swift is parent organization of: TraceTuner is parent organization of: seqMINER is parent organization of: MIREAP is parent organization of: miRDeep-P is parent organization of: ncPRO-seq is parent organization of: vcf2MSAT is parent organization of: SAMMate is parent organization of: FishingCNV is parent organization of: NGSpeAnalysis is parent organization of: Bamformatics is parent organization of: IBDLD is parent organization of: HATS is parent organization of: SolSNP is parent organization of: Trinity is parent organization of: SNPTools is parent organization of: MendelScan is parent organization of: LoFreq is parent organization of: GENE-counter is parent organization of: RNA CoMPASS is parent organization of: VCAKE is parent organization of: LOCAS is parent organization of: Contrail is parent organization of: AMOS is parent organization of: VDJFasta is parent organization of: RDP FrameBot is parent organization of: Celera Genome Browser is parent organization of: AutoMap is parent organization of: DSP is parent organization of: Neuroimaging in Python is parent organization of: cnvHiTSeq is parent organization of: Easyfig is parent organization of: bisReadMapper is parent organization of: palfinder is parent organization of: sam comp is parent organization of: CongrPE is parent organization of: CallSim is parent organization of: Tuxedo is parent organization of: SAPAS is parent organization of: iso2mesh is parent organization of: Telescoper is parent organization of: HeurAA is parent organization of: CoNIFER is parent organization of: DynamicProg is parent organization of: SOCS is parent organization of: BEADS is parent organization of: miRSeqNovel is parent organization of: PIA is parent organization of: ChimeraSlayer is parent organization of: RDXplorer is parent organization of: SeqTRACS is parent organization of: Crossbow is parent organization of: Hanalyzer is parent organization of: QUAST is parent organization of: Drosophila anatomy and development ontologies is parent organization of: Diffusion Tensor Imaging ToolKit is parent organization of: OLORIN is parent organization of: NovelSeq is parent organization of: SobekCM is parent organization of: NEMO Ontology is parent organization of: Mindtouch DekiWiki is parent organization of: MGED Ontology is parent organization of: SPInDel is parent organization of: LMAT is parent organization of: VariationHunter is parent organization of: G-BLASTN is parent organization of: T-lex is parent organization of: SeqAnt is parent organization of: PAZAR is parent organization of: CUSHAW is parent organization of: TMAJ is parent organization of: Manatee is parent organization of: HOLLOW is parent organization of: OWL API is parent organization of: Bioelectromagnetism Matlab Toolbox is parent organization of: Predictive Networks is parent organization of: Centroid Trajectory Analysis is parent organization of: PowerMap is parent organization of: BarraCUDA is parent organization of: FastSemSim is parent organization of: Wisconsin White Matter Hyperintensities Segmentation Toolbox is parent organization of: ArrayOligoSelector hosts: Batman-Seq
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nlx_38463 |
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SCR_004365 |
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2026-08-21 12:37:34 |
923 |
BetA-Series COrrelation
Resource Report
Resource Website
1+ mentions
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BetA-Series COrrelation (RRID:SCR_014086)
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BASCO
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software resource, software toolkit
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A software tool (with GUI) for investigating inter-regional functional connectivity in event-related fMRI data and allows the user to assess the modulation of functional connectivity by an experimental condition.
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software toolkit, toolbox, functional connectivity, matlab, connectivity analysis
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uses: MarsBaR region of interest toolbox for SPM is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
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DOI:10.3389/fnsys.2015.00126 |
Available for download |
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SCR_014086 |
Beta-Series Correlation, Beta Series Correlation |
2026-08-21 12:40:15 |
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