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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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EEGLAB Resource Report Resource Website 5000+ mentions |
EEGLAB (RRID:SCR_007292) | EEGLAB | software resource, software application, data processing software, software toolkit | Interactive Matlab toolbox for processing continuous and event-related EEG, MEG and other electrophysiological data incorporating independent component analysis (ICA), time/frequency analysis, artifact rejection, event-related statistics, and several useful modes of visualization of the averaged and single-trial data. First developed on Matlab 5.3 under Linux, EEGLAB runs on Matlab v5 and higher under Linux, Unix, Windows, and Mac OS X (Matlab 7+ recommended). EEGLAB provides an interactive graphic user interface (GUI) allowing users to flexibly and interactively process their high-density EEG and other dynamic brain data using independent component analysis (ICA) and/or time/frequency analysis (TFA), as well as standard averaging methods. EEGLAB also incorporates extensive tutorial and help windows, plus a command history function that eases users'' transition from GUI-based data exploration to building and running batch or custom data analysis scripts. EEGLAB offers a wealth of methods for visualizing and modeling event-related brain dynamics, both at the level of individual EEGLAB ''datasets'' and/or across a collection of datasets brought together in an EEGLAB ''studyset.'' For experienced Matlab users, EEGLAB offers a structured programming environment for storing, accessing, measuring, manipulating and visualizing event-related EEG data. For creative research programmers and methods developers, EEGLAB offers an extensible, open-source platform through which they can share new methods with the world research community by publishing EEGLAB ''plug-in'' functions that appear automatically in the EEGLAB menu of users who download them. For example, novel EEGLAB plug-ins might be built and released to ''pick peaks'' in ERP or time/frequency results, or to perform specialized import/export, data visualization, or inverse source modeling of EEG, MEG, and/or ECOG data. EEGLAB Features * Graphic user interface * Multiformat data importing * High-density data scrolling * Defined EEG data structure * Open source plug-in facility * Interactive plotting functions * Semi-automated artifact removal * ICA & time/frequency transforms * Many advanced plug-in toolboxes * Event & channel location handling * Forward/inverse head/source modeling | visualization, eeg modeling, independent component analysis, meg modeling, eeg, erp, spectral decomposition, single-trial, matlab, meg, electrophysiology, format conversion, source separation analysis, fourier time-domain analysis, spectral analysis, temporal wavelet analysis, anova, event related potential, three dimensional display, two dimensional display |
uses: ERPwavelab is used by: PeriodAmplitudeAnalysis is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: SoftCite is related to: Neural Maestro is related to: Measure Projection Toolbox is related to: NFT is related to: Source Information Flow Toolbox is related to: HeadIT is related to: BCILAB is related to: EEGVIS is related to: EYE-EEG (combined eye-tracking & EEG) is related to: Libeep EEGLAB plugin is related to: The Bergen fMRI Toolbox Plugin for EEGLab is related to: BVA import/export EEGLAB plugin has parent organization: Swartz Center for Computational Neuroscience has plug in: Dusk2Dawn works with: FieldTrip |
NINDS | PMID:15102499 | Free, Available for download, Freely available | nif-0000-00076 | https://eeglab.org/others/EEGLAB_References.html | http://www.nitrc.org/projects/incf_eeglab/, http://sccn.ucsd.edu/eeglab/index.html | SCR_007292 | 2026-08-01 12:08:35 | 6721 | ||||
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Swartz Center for Computational Neuroscience Resource Report Resource Website 10+ mentions |
Swartz Center for Computational Neuroscience (RRID:SCR_001933) | SCCN | topical portal, data or information resource, portal | Computational neuroscience center that observes and models how functional activities in multiple brain areas interact dynamically to support human cognition, creativity and social interaction. Center research involves development computational methods and software, experimental methods and equipment, collection and analysis of human cognitive experiments, and collaborations to analyze data collected by other groups in such experiments. The Center has a 72-channel EEG recording system customized for use in the fMRI environment, and a very-high density Biosemi Active Two active-electrode EEG system, rapidly configurable either as a 256-channel system for a single subject or as two 136-channel systems for recording from two subjects simultaneously. In addition, UCSD now has a 306-channel MEG plus 128-channel EEG system (Neuromag/Elektra). Projects in the Center include studies of human cognitive processes including attention and memory, role of the anterior/posterior cingulate, time perception and emotional expression. Data acquisition includes high-density EEG, concurrent EEG and fMRI recording and analysis, and face video processing. Current analysis approaches include independent component and time-frequency analysis. | emotional expression, fmri, anterior cingulate, attention, brain, cognition, computational neuroscience, concurrent eeg, high-density eeg, human, memory, posterior cingulate, social interaction, software, time perception, video procession, job, eeg, cognitive process, creativity, independent component analysis, time-frequency analysis |
has parent organization: University of California at San Diego; California; USA is parent organization of: Measure Projection Toolbox is parent organization of: NFT is parent organization of: Source Information Flow Toolbox is parent organization of: FMRLAB is parent organization of: BCILAB is parent organization of: EEGLAB |
Swartz Foundation | nif-0000-10509 | SCR_001933 | Swartz Center for Computational Neuroscience | 2026-08-01 12:01:39 | 26 | |||||||
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NFT Resource Report Resource Website 1+ mentions |
NFT (RRID:SCR_002450) | NFT | image analysis software, segmentation software, software toolkit, software application, data processing software, software resource | A MATLAB Toolbox for generating realistic head models from available data (MRI and/or electrode locations), for computing numerical solutions for the forward problem of electromagnetic source imaging and for single dipole source localization. The NFT includes tools for segmenting scalp, skull, cerebrospinal fluid (CSF) and brain tissues from T1-weighted magnetic resonance (MR) images. The Boundary Element Method (BEM) and Finite Element Method (FEM) are used for the numerical solution of the forward problem. When a subject MR image is not available a template head model can be warped to measured electrode locations to obtain an individualized head model. Toolbox functions may be called either from a graphic user interface compatible with EEGLAB or from the MATLAB command line. | eeg, meg, electrocorticography, eeg modeling, forward - inverse, modeling, matlab, mri, electrode |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB has parent organization: Swartz Center for Computational Neuroscience |
PMID:20457183 | Free, Available for download, Freely available | nlx_155823 | http://www.nitrc.org/projects/nft | SCR_002450 | NFT: Neuroelectromag Forward Modeling, Neuroelectromagnetic Forward Modeling Toolbox, Neuroelectromagnetic Forward Head Modeling Toolbox | 2026-08-01 12:01:48 | 1 | |||||
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Source Information Flow Toolbox Resource Report Resource Website 1+ mentions |
Source Information Flow Toolbox (RRID:SCR_002561) | SIFT | image analysis software, data visualization software, segmentation software, software toolkit, software application, data processing software, software resource | A GUI-enabled EEGLAB plugin for modeling and visualizing dynamical interactions between electrophysiological signals (EEG, ECoG, MEG, etc), preferably after transforming signals into the source domain. The toolbox consists of four modules: (1) Data Preprocessing, (2) Model Fitting and Connectivity Estimation, (3) Statistical Analysis, (4) Visualization, with a fifth Group Analysis module in development. Module 2 currently includes several adaptive multivariate autoregressive modeling (AMVAR) algorithms, including segmentation AMVAR and Kalman filtering. This subsequently allows the user to validate the model and estimate (in the time-frequency domain) a wide range of multivariate Granger-causal and coherence measures published to date. Module 3 includes routines for parametric and non-parametric significance testing. Module 4 contains routines for interactive visualization of dynamical interactions across time, frequency and anatomical source location. | connectivity analysis, directed transfer analysis, eeg, meg, electrocorticography, granger causality, partial directed coherence |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB has parent organization: Swartz Center for Computational Neuroscience |
Free, Available for download, Freely available | nlx_155967 | http://www.nitrc.org/projects/sift | SCR_002561 | 2026-08-01 12:02:11 | 3 | |||||||
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FieldTrip Resource Report Resource Website 1000+ mentions |
FieldTrip (RRID:SCR_004849) | software toolkit, data analysis software, software application, software resource, data processing software | Software toolbox for analysis of MEG, EEG, and other electrophysiological data. Used by experimental neuroscientists. | MEG, EEG, iEEG, analysis, data, time, frequency, source, reconstruction, dipole, beamformers, non parametric, statistical, testing |
uses: MATLAB is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Human Connectome Coordination Facility has parent organization: Radboud University; Nijmegen; The Netherlands works with: CoSMoMVPA works with: SleepTrip works with: EEGLAB works with: SPM |
Human Connectome project ; NIH Blueprint for Neuroscience Research ; Netherlands Ministry of Economic Affairs ; Netherlands Ministry of Education Culture and Science |
PMID:21253357 | Free, Available for download, Freely available, Tutorial available | nlx_143928 | http://www.nitrc.org/projects/fieldtrip | SCR_004849 | 2026-08-01 12:02:47 | 3073 | ||||||
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NeuroImaging Tools and Resources Collaboratory (NITRC) Resource Report Resource Website 100+ mentions |
NeuroImaging Tools and Resources Collaboratory (NITRC) (RRID:SCR_003430) | NITRC | data or information resource, data repository, storage service resource, portal, community building portal, service resource, software resource, software repository | Software repository for comparing structural (MRI) and functional neuroimaging (fMRI, PET, EEG, MEG) software tools and resources. NITRC collects and points to standardized information about structural or functional neuroimaging tool or resource. | collaboration, information, resource, structural, functional, neuroimaging, MRI, fMRI, EEG, MEG, PET |
is used by: NIF Data Federation is used by: Consortium for Reliability and Reproducibility is used by: DataLad is recommended by: National Library of Medicine lists: Dipy lists: 3DMeshMetric lists: MPScope lists: VectorValuedHistogramNormalizer lists: Faceted Search Based Ontology Visualizer lists: Morphometry BIRN lists: Colin 3T/7T High-resolution Atlas lists: CMFreg lists: BrainFX lists: dinifti lists: Center for Computational Biology at UCLA lists: Convert MNI coordinates to or from XYZ lists: Licensing issues in software and data lists: Local Binary Pattern Analysis Tools for MR Brain Images lists: MIView lists: uManager lists: Penn Hippocampus Atlas lists: RapidArt lists: Scribe lists: ShapeWorks lists: Vervet Probabilistic Atlas lists: Talairach Daemon lists: ADHD-200 Preprocessed Data lists: LORIS - Longitudinal Online Research and Imaging System lists: NVM lists: Maps4Mipav (Exploratory JIST) lists: Autism Tissue Program lists: MEG Tools lists: PyNIfTI lists: LONI Visualization Tool lists: Mind Research Network - COINS lists: OpenElectrophy lists: CIFTI Connectivity File Format lists: 3DSlicerLupusLesionModule lists: BrainNetworkConstructionAnalysisPlatform lists: COMPARE lists: Data Format Tools lists: GesTr lists: I/OWA lists: MINC Example files lists: cbiNifti: Matlab/Octave Nifti library lists: BRAINSCut lists: C-PAC lists: Connectir lists: DicomBrowser lists: Hitachi Optical Topography System lists: Net Station API lists: imcalc: SPM batch image calculator lists: BRAINSCortex lists: Insight Segmentation and Registration Toolkit lists: LONI Debabeler lists: LONI Pipeline Processing Environment lists: NiLearn lists: MRI Studio lists: BraVa lists: Brede Wiki lists: Center for Functional Neuroimaging Technologies lists: Philips Users Community lists: medInria lists: Beijing: Eyes Open Eyes Closed Study lists: vIST/e lists: Camino lists: Diffusion Tensor Imaging ToolKit lists: TORTOISE lists: NIDAG: Neuroimaging Data Access Group lists: MRI CVPR lists: vuTools lists: Medical Image Processing and Visualization in Virtual Environments lists: Brainstorm lists: Atlas3D lists: FMRISTAT - A general statistical analysis for fMRI data lists: FreeSurfer lists: Rosetta Bit lists: Laboratory of Neuro Imaging lists: Group ICA of fMRI Toolbox lists: Hierarchical Attribute Matching Mechanism for Elastic Registration lists: Internet Brain Segmentation Repository lists: Neural ElectroMagnetic Ontologies (NEMO) Project lists: Wavelet-based Image Fusion lists: ITK-SNAP lists: Internet Brain Volume Database lists: Statistical non-Parametric Mapping lists: VoxBo lists: NITRC Computational Environment lists: Spatially Constrained Parcellation lists: Cluster reporter lists: Cluster Extent Correction lists: 4D Atlases Construction lists: CIGAL lists: CleanLine lists: Computational Morphometry Toolkit lists: Cognitive Paradigm Ontology lists: aBEAT lists: MR Connectome Automated Pipeline lists: International Neuroinformatics Coordinating Facility lists: Functional Regression Analysis of DTI Tract Statistics lists: MCIC lists: MGDM: Multi Geometric Deformable Model lists: MIAS Registration Toolkit lists: Medical Image Visualization and Analysis lists: Microstructural correlation toolbox lists: MisterI lists: MriWatcher lists: Multiple Correlation Function Tool lists: NITRC Community Conferences Workshops and Meetings lists: BRAINSFit lists: INCF Software Center lists: BrainVision Analyzer lists: COGNISION lists: DPARSF lists: GLIRT lists: MINC lists: Group Level Imputation of Statistic Maps lists: MRIcron lists: Inter-Group Registration Toolbox lists: MCML and CONV lists: MEGSIM lists: MIRIAD lists: MRI Defacer lists: MS lesion segmentation challenge 2008 lists: Measure Projection Toolbox lists: Mindboggle lists: Mindboggle-101 atlases lists: ModelGUI lists: Multi-Modal MRI Reproducibility Resource lists: MultiTracer lists: Multicomponent T2 estimation with stimulated echo correction lists: NCANDA: Data Integration Component lists: NFT lists: Net Station EEG Software lists: Network Based Statistic Toolbox lists: NeuroScope lists: Numerical Fibre Generator lists: PSTNet: MRI Simulator lists: cortex lists: iBEAT lists: M3 lists: Group ICA Of EEG Toolbox lists: 4D-PARSeR Pathological Anatomy Regression via Segmentation and Registration lists: Automatic Segmentation Tool Adapter lists: DTI-TEMPLATE-RHESUS-MACAQUES lists: LONI Provenance Editor lists: MNI N3 lists: MRI Digital Projection System lists: NIDB - Neuroinformatics Database lists: NIPY lists: NIRAL Utilities lists: NIRx NIRS Neuroimaging lists: NIRx2nirs: A NIRx to .nirs data converter lists: NITRC Enhanced Services lists: NITRC GForge Extensions lists: NPTK lists: NeuroImaging Analysis Kit (NIAK) lists: NiBabel lists: NiftyRec lists: Nipype lists: Nirfast lists: Nitime lists: Non-Rigid Image Registration Evaluation Project lists: Normative Independent Component Analysis lists: OEI: fMRI compatible olfactometer lists: ORS Visual SI lists: OpenMEEG lists: PANDA lists: PESTICA fMRI Physio Detection/Correction lists: PHYCAA+: adaptive physiological noise correction for BOLD fMRI lists: ParaView lists: Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR) lists: Presentation lists: PySurfer lists: Pythagorean Displacement and Motion Regressors lists: Quantitative Diffusion Tools lists: R-package for adaptive DWI analysis lists: R-package for adaptive fMRI analysis lists: REX lists: RFT FDR lists: ROBEX lists: RT Image lists: Resource Ontology Discussion Group lists: Rodent Brain Extraction Tool lists: Rodent Cortical Thickness Analysis lists: S-rep Fitting Statistics and Segmentation lists: SCIRun lists: SCRalyze lists: SOCK lists: SPHARM-MAT lists: SPHARM-PDM Toolbox lists: SRI24 Atlas: Normal Adult Brain Anatomy lists: Seg3D lists: ShapeComplexAtlas lists: Signed Differential Mapping lists: Sleuth lists: Slice:Drop lists: Slicer3 Example Modules lists: Source Information Flow Toolbox lists: Spanish Resting State Network lists: Spatial Analysis 3D lists: Stereoscopic Atlas of Intrinsic Brain Networks lists: UNC Infant 0-1-2 Atlases lists: UNC Primate Brain Atlas lists: XCEDE Schema lists: peak nii lists: pydicom lists: pyxnat lists: scikit-learn lists: shapeAnalysisMANCOVA - SPHARM tools lists: VMTK in 3D Slicer lists: 3D Interactive Chemical Shift Imaging lists: BRAINSSurfaceStats lists: Brain lesion segmentation tool using SVM lists: Diffusion Tractography with Kalman Filter lists: Fast Nonlocal Means for MRI denoising lists: Monte Carlo Simulation Software: tMCimg lists: Web Interfaces for Multiscale Images lists: STAPLE lists: Segmentation Validation Engine lists: Spatial Statistical Parametric Mapping lists: SpineSegmentation module for 3DSlicer lists: Stochastic Tractography System lists: Subject Library lists: TAPIR lists: TARQUIN lists: Template Image Processing Library lists: TetraMetrix lists: TractoR: Tractography with R lists: Triangle BioSystems lists: TumorSim lists: TurtleSeg lists: UNC Human Brain Atlas lists: VR Worlds 2 lists: Vaa3D lists: ValMap: simple statistical mapping tool lists: WFU Biological Parametric Mapping Toolbox lists: WFU Pipeline lists: Working Memory Trainer lists: vis: SPM Visualized Statistics toolbox lists: Synchronized Histological Image Viewing Architecture lists: LONI ShapeViewer lists: LONI ShapeTools lists: FFT Library lists: Automated recognition of brain region mentions in neuroscience literature. lists: NUTMEG lists: Cognitive Atlas lists: Mouse BIRN Atlasing Toolkit lists: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat lists: FSL lists: LEAD-DBS lists: Brainscape lists: EONS lists: BioImage Suite lists: ADNI - Alzheimer's Disease Neuroimaging Initiative lists: MindSeer lists: XNAT - The Extensible Neuroimaging Archive Toolkit lists: brainmap.org lists: ImageJ lists: Neuroimaging Informatics Technology Initiative lists: IMOD lists: Statistics Online Computational Resource lists: signalml.org lists: Mouse Biomedical Informatics Research Network lists: NIH MRI Study of Normal Brain Development lists: MGH-USC Human Connectome Project lists: Fusion ICA Toolbox lists: Corpus Callosum Thickness Profile Analysis Pipeline lists: ABIDE lists: Mouse Connectome Project lists: NITRC-IR lists: Open Connectome Project lists: neurodebian lists: NIMH Data Archive lists: ANTS - Advanced Normalization ToolS lists: XNAT Extras lists: TrackVis lists: Brain Connectivity Toolbox lists: FieldTrip lists: LONI Inspector lists: BrainLiner lists: OpenNeuro lists: Biomedical Informatics Research Network lists: McConnell Brain Imaging Center MNI Macaque Atlas lists: SINOMO lists: DONE: Detection of Outlier NEurons lists: Neuro Bureau lists: ADHD-200 Sample lists: 1000 Functional Connectomes Project lists: PubBrain lists: CBRAIN lists: ENIGMA: Enhancing Neuro Imaging Genetics Through Meta-Analysis lists: Bisque lists: 3D Slicer lists: Internet Analysis Tools Registry lists: Neuromorphometrics lists: Analysis of Functional NeuroImages lists: Automated Image Registration lists: BASH4RfMRI lists: MNE software lists: Object-Oriented Development Interface for NMR lists: NYU CSC TestRetest lists: Optseq - fMRI Event Scheduler lists: TOADS-CRUISE Brain Segmentation Tools lists: MouseTracker lists: Hammer And WML Modules for 3D Slicer lists: ABC (Atlas Based Classification) lists: Allen Brain Atlas API lists: Viking Viewer for Connectomics lists: ARCTIC lists: ArtRepair for robust fMRI lists: Automatic Registration Toolbox lists: Artifact Detection Tools lists: Segmentation of Hippocampus Subfields lists: ASL data processing tool box lists: Bioelectromagnetism Matlab Toolbox lists: PyMVPA lists: Human Imaging Database lists: BrainImage Software lists: Brede Toolbox lists: Computerized Anatomical Reconstruction and Editing Toolkit lists: BrainColor: Collaborative Open Labeling Online Resource lists: Registry Builder Data Harmonization and Aggregation Tool lists: PsychoPy lists: NiftySim lists: NiftyReg lists: Neurobiological Image Management System lists: BRAINSTools lists: MeshValmet: Validation Metric for Meshes lists: BrainSuite lists: DW-MRI Random Walk Simulator lists: Web Game for Collaborative Labeling lists: BrainVoyager Brain Tutor lists: POLGUI - Matlab Polhemus Interface lists: BrainVoyager Brain Viewer lists: NeuroPub Visualizer lists: NODDI Matlab Toolbox lists: MITK Diffusion lists: Federal Interagency Traumatic Brain Injury Research Informatics System lists: BrainMaps.org lists: PRoNTo lists: Scalable Brain Atlas lists: NIH Human Connectome Project lists: Mesh-based Monte Carlo (MMC) lists: Matlab Neuroshare Library lists: MRtrix lists: MABMIS: Multi-Atlas Based Multi-Image Segmentation lists: Monte Carlo eXtreme lists: Whole Brain Catalog lists: BCILAB lists: ABSORB: Atlas Building by Self-Organized Registration and Bundling lists: VAMCA lists: SPM lists: Low Resolution Electromagnetic Tomography lists: SurfStat lists: Cambridge Brain Activation lists: CLEAVE lists: CoCoMac lists: fMRI Data Center lists: Function BIRN lists: EEGLAB lists: BrainVISA / Anatomist lists: MIPAV: Medical Image Processing and Visualization lists: NeuroLens lists: WFU PickAtlas lists: Open Access Series of Imaging Studies lists: BioSig: An Imaging Bioinformatics System for Phenotypic Analysis lists: xjView: A Viewing Program For SPM lists: Human Connectome Coordination Facility lists: ASL spm8 lists: Integrated Manually Extracted Annotation lists: JIST: Java Image Science Toolkit lists: Functional Analysis of Diffusion Tensor lists: AHEAD lists: ANTsR lists: 3DBar lists: Cancer Imaging Archive (TCIA) lists: Pediatric Imaging Neurocognition and Genetics lists: Atlasing of the basal ganglia lists: cmrep lists: 3D DTI Atlas of the Rat Brain In Postnatal Day 5 14 and Adulthood lists: AutoSeg lists: BXH/XCEDE Tools lists: Baby Brain Toolkit lists: Best Practices for Software Development lists: Brain Catalogue lists: Draw3D and Meshinator lists: Brain Segmentation Testing Protocol lists: BrainNet Viewer lists: BrainSolution lists: Brainvox lists: C8: Corpus Callosum Computations lists: CAMINO-TRACKVIS lists: CANDI Share: Schizophrenia Bulletin 2008 lists: CBS High-Res Brain Processing Tools lists: CCSeg - Corpus Callosum Segmentation lists: Cerebral Blood Flow Database and Analysis Pipeline lists: Create DWI Atlas lists: DFBIdb lists: DIAMOND lists: DICOM UploadGUI lists: DOTS WM tract segmentation lists: DTI Fiber Tract Statistics lists: DW-MRI registration in FSL lists: DbGaP Cleaner lists: DentalTools lists: Diffusion MRI - In-vivo and Phantom Data lists: Diffusion MRI at DKFZ Heidelberg lists: Diffusion Warp lists: Disease State Prediction lists: EEG human categorization data lists: Epsilon Radial Networks lists: FBIRN Image Processing Scripts lists: FSL extensions lists: False Discovery Rate Weighted lists: Fiber Tracking Tool lists: Fiber-tracking based on Finsler distance lists: FiberViewerLight lists: Finsler tractography module for Slicer lists: Fluid Registration and Atlas Toolkit lists: Framework for Open Programmatic Access lists: Functional Connectivity Community lists: Functional ROI Atlas lists: Functional and Structural Neuroimaging Journals Listing lists: GAMBIT lists: GAMMA lists: BRAINSMush lists: GPU based affine registration lists: GRETNA lists: Generalized Covariance Analysis lists: Generalized PPI Toolbox lists: Group Information Guided ICA lists: Groupwise Image Registration Toolbox lists: HD Neuro-Informatics lists: Hitachi2nirs lists: IDeA Lab brain image processing suite lists: INCF Neuroimaging Data Sharing lists: INIA19 Primate Brain Atlas lists: JHU Proj. in Applied Medical Imaging lists: JIST Resources for Algorithm Development lists: BRAINSROIAuto lists: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI lists: Landman NeuroImaging Tools lists: Local Label Learning Segmentation lists: MASI Label Fusion lists: MASIMatlab lists: MATLAB Tutorial on Diffusion Tensor MRI lists: Multi-Echo Independent Component Regression Group-Level Connectivity Dataset lists: Multi-fiber Reconstruction from DW-MRI lists: NITRC Books lists: Network Modification Tool Lite lists: Non-rigid groupwise registration method lists: Rockland Download Link Script lists: Subject Order-Independent Group ICA lists: Task Independent Fluctuations Discussion lists: UNC Human DTI Brain Atlas lists: BRAINSTestData lists: cPPI Toolbox for fMRI lists: fMRI Classification in R lists: fMRI-CPCA lists: fNIRS Data Analysis Environment lists: factory t1 dti lists: BRAINSDemonWarp lists: AMILab lists: ADJUST lists: ALVIN lists: Age Related Atrophy Dataset lists: B0 and eddy current correction for DTI lists: BESA lists: BSMac lists: BVQXtools lists: BioMesh3D lists: BrainBrowser lists: BrainGraph Editor lists: BrainMagix SPM Viewer lists: BrainMask Volume Processing Tool lists: Brainsight lists: Brainwaver lists: CANDI Neuroimaging Access Point lists: CBFBIRN lists: CDF-HC PointSetReg lists: GIMIAS lists: CURRY lists: CalaTK lists: CoCoMac-Paxinos3D viewer lists: INVIZIAN lists: CONN lists: Connectome File Format lists: Connectome Viewer lists: Cytoseg lists: DICCCOL predictor lists: DRAMMS lists: DSI Studio lists: Level-set Segmentation for Slicer3 lists: DTI BrainImageScope lists: DTI-Reg lists: DTIProcess ToolKit lists: DWI/DTI Quality Control Tool: DTIPrep lists: Diffusional Kurtosis Estimator lists: Distributome lists: ImageVis3D lists: E-Prime lists: E-Prime Extensions for fMRI lists: EEGVIS lists: EEProbe lists: EMSE Suite lists: LONI Brain Parser lists: EPILAB lists: ERPLAB lists: FIV lists: FMRIpower lists: Fiber Optic Button Response System lists: Free-D lists: GIFTI lists: GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data lists: HAMMER Suite lists: HERMES lists: HI-SPEED Software Packets lists: Homer2 lists: IIT Human Brain Atlas lists: JIP Analysis Toolkit lists: Jim lists: LDDMM lists: LIBEEP lists: LIMO EEG lists: LONI De-identification Debablet lists: Waxholm Space lists: Lipsia lists: Lumina LP- 400 Response System lists: MRI Dataset for Hippocampus Segmentation lists: MaCH-Admix lists: Mach2dat lists: Mag Design and Engineering lists: MagVenture: MagPro Magnetic Stimulator lists: SR Research EyeLink Eye Trackers lists: Mango lists: Manually Labeled MRI Brain Scan Database lists: MarsBaR region of interest toolbox for SPM lists: MazeSuite lists: MoTrak Head Motion Tracking System lists: NCIGT Fast Imaging Library lists: NeuroWeb - NeuroImaging Database lists: Neuroimaging Made Easy Blog lists: Neurophysiological Biomarker Toolbox lists: SVV lists: Slicer3 Module Rician noise filter lists: UNC/Utah NAMIC DTI Fiber Analysis Framework lists: caGWAS lists: eConnectome lists: elastix lists: fMRI Artefact rejection and Sleep Scoring Toolbox lists: MACH lists: fMRI Grocer lists: fNIR Devices lists: fanDTasia Java Applet: DT-MRI Processing lists: g.BSanalyze lists: iTools lists: iView X MRI-LR - Eye Tracking for fMRI lists: map3d lists: NICE-SIGN lists: NIRS-SPM lists: NITRC Community lists: NordicNeuroLab lists: PICSL Multi-Atlas Segmentation Tool lists: Paradigm lists: Pipeline Neuroimaging VirtualEnvironment lists: Pipeline System for Octave and Matlab lists: ProbabilisticBiasCorrection lists: Program for optimal design of blocked fMRI experiments lists: QCQP lists: REST: a toolkit for resting-state fMRI lists: Robust Biological Parametric Mapping lists: SPM SS - fMRI functional localizers lists: Solar Eclipse Imaging Genetics tools lists: VPixx: VIEWPixx /3D lists: resting-state pediatric imaging template lists: DATAPixx lists: GTRACT lists: Wisconsin White Matter Hyperintensities Segmentation Toolbox lists: COBRE lists: AngioCalc Cerebral Aneurysm Calculator lists: USC Multimodal Connectivity Database lists: BRAINSConstellationDetector lists: ASA - Advanced Source Analysis lists: BRAINSTracer lists: EYE-EEG (combined eye-tracking & EEG) lists: BrainVoyager lists: Mean Machine lists: ERP PCA Toolkit lists: LiverSegm lists: GSA-SNP lists: FastICA lists: DTI Atlas Builder lists: Neuroimaging in Python lists: Brain Decoder Toolbox lists: iso2mesh lists: CUDA-SPHERE-FWD-MEEG lists: BrainCSI lists: BrainVisa Morphology extensions lists: VPixx: VIEWPixx lists: VPixx: PROPixx lists: GenGen lists: MACH 1.0 lists: PennCNV lists: SumsDB lists: Integrated Software lists: NeuroLex lists: Parkinson's Progression Markers Initiative lists: NeuroSynth lists: Textpresso lists: ANNOVAR lists: Graphtools lists: Grantees Meeting for NITRC lists: FP-CIT SPECT brain template in MNI space lists: Brain Computer Interface 2000 Software Package lists: BEAST lists: Brian Simulator lists: Connectome Workbench lists: ConnectomeDB lists: DIAN - Dominantly Inherited Alzheimer Network lists: NKI-RS Enhanced Sample lists: EPILEPSIE database lists: GEneral NEural SImulation System: The Neurospaces Project lists: Hippocampome.org lists: Kitware lists: Kymata Atlas lists: L-Measure lists: MDR lists: neuroConstruct lists: Neurolucida lists: NeuroMorpho.Org lists: NEURON lists: NeuronJ: An ImageJ Plugin for Neurite Tracing and Quantification lists: NeuroVault lists: National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS) lists: NINDS Repository lists: NKI/Rockland Sample lists: ODIN lists: OBART lists: Open Science Framework lists: PLINK lists: MBF BioScience: Stereo Investigator lists: studyforrest.org lists: Virtual brain lists: TREES toolbox lists: APERTURE lists: 3dsvm lists: 7T Structural MRI scans ATAG lists: Atlases of amygdala and hippocampus for pediatric populations lists: BetA-Series COrrelation lists: bic-mni-models lists: BiofilmQuant lists: Biomag Discussion Group on Yahoo lists: Brain Entropy in space and time (BEst) lists: Brainnetome Atlas Viewer lists: Brainnetome fMRI toolkit lists: BROCCOLI lists: C-MIND Database lists: CARLsim: a GPU-accelerated SNN Simulator lists: Clinical Toolbox for SPM lists: CMIND PY lists: COST lists: dcm2nii lists: DICOMConvert lists: Displacement Field Viewer lists: DTI denoising lists: Efficient Longitudinal Upload of Depression in the Elderly (ELUDE) lists: Efficient Permutation Testing lists: DTI-TK lists: ERPwavelab lists: ExPosition Packages lists: Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation lists: Forward: Accurate finite element electromagnetic head models lists: freesurfR lists: Functional Connectivity Analysis Tool for near-infrared spectroscopy data lists: GazeReader lists: gCCA lists: Generation R Pediatric MRI Resources lists: GIMME lists: GLMdenoise: a fast, automated technique for denoising task-based fMRI data lists: GraphVar: A toolbox for comprehensive graph analyses of functional brain connectivity lists: HAMMER: Deformable Registration lists: HBM Hackathon lists: HDBIG lists: High-quality diffusion-weighted imaging of Parkinsons disease lists: MGA - Multimodal Glioma Analysis lists: Image Synthesis Tools lists: Imeka Tractography Service lists: International Imaging Genetics Conference lists: Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.0 lists: Iterative dual-regression with sparse prior lists: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI lists: KWScene: MRML-based Atlas and Scene Builder/Reader/Writer lists: L-Neuron lists: Laplace Beltrami Filter on QuadEdge Meshes lists: libSBML lists: Lightweight Data Pipeline lists: Longitudinal MS Lesion Imaging Archive lists: MARS (Multi-Atlas Robust Segmentation) lists: minc-toolkit lists: minc-toolkit-testsuite lists: MISST - Microstructure Imaging Sequence Simulation ToolBox lists: MRI Neuroanatomy Labeling Services lists: MRIcroS lists: Multivariate General Linear Models (MGLM) on Riemannian Manifolds lists: Neoseg lists: NeoSegPipeline lists: NeuriteTracer lists: NeuroElf lists: Neuron-C lists: NIH Pediatric MRI Data Repository lists: NIH-CIDI Lung Segmentation Tool lists: NiiStat lists: Northwestern University Schizophrenia Data and Software Tool (NUSDAST) lists: Notion ResearchPACS lists: NTU-DSI-122: a DSI template in ICBM-152 space lists: OpenViBE lists: OpenWalnut lists: Orientation Distribution Function in Constant Solid Angle (CSA-ODF) lists: Parkinsons Disease Discovery Database lists: Prediction and Diagnosis for Depression and Schizophrenia lists: Preprocessed Connectomes Project lists: Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data lists: Ruby NIfTI lists: SCORE lists: SFMProject lists: ShapePopulationViewer lists: Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations lists: SPIKECOR: fMRI tool for automated correction of head motion spikes lists: Spinal Cord Toolbox lists: Stark Cross-Sectional Aging lists: Brain Coactivation Map lists: Multiscale Object Orientation Simulation Environment lists: Striatal Subregional VOImap lists: Topographica lists: Turbo-BrainVoyager lists: CRL Unbiased and Deformable Spatiotemporal Atlas of the Fetal Brain lists: UNC-Wisconsin Neurodevelopment Rhesus MRI Database lists: Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX) lists: VMTK in 3D Slicer lists: Wisconsin Cortical Thickness Analysis (CTA) Toolbox lists: XFSL: An FSL toolbox lists: XNBC lists: YMDTI: Diffusion Tensor Images of Healthy Young Males lists: BraTumIA (Brain Tumor Image Analysis) lists: CAWorks lists: Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND) lists: Graph Theory GLM (GTG) MATLAB Toolbox lists: Functional Mixed Processes Models lists: Papaya lists: Parallel Stochastic Ion Channel Simulator lists: Advanced Connectivity Analysis (ACA) lists: International Imaging Genetics Conference lists: Analyze Software System lists: Optseq lists: ENIGMA-DTI Pipeline lists: Umea Brain Arteries lists: MetaSearch lists: BrainBox lists: BluePyOpt lists: MultiXplore lists: Automatic Tractography-based Parcellation Pipeline lists: Epilepsy T1 and Hippocampal Segmentation Datasets lists: Mixed Effect Model of Genetic-Set and Environment Interaction lists: masked ICA (mICA) Toolbox lists: Altered States Database lists: User Friendly Functional Connectivity - UF²C lists: Intra- and inter-scanner reliability of RS-fMRI BOLD and ASL with eyes closed vs. eyes open lists: Region to Region lists: Waxholm Space Atlas of the Sprague Dawley Rat Brain lists: Nutil - Neuroimaging utilities lists: MeshView lists: vini: A viewer for fMRI data lists: brainGraph lists: Diffusion Toolkit lists: Neurodocker lists: HeuDiConv: a heuristic-centric DICOM converter lists: Knowing what you know (kwyk) - Bayesian Brain Parcellation lists: Rhesus Macaque Brain Atlases lists: MIITRA atlas lists: MonkeyCBP lists: ReproNim/containers lists: ReproMan lists: ABCD-ReproNim Course lists: Ventricular Morphometry Analysis System lists: ONPRC18 Multimodal MRI Atlas lists: volBrain lists: Waxholm Space is affiliated with: Manual Align RTS2000 is related to: University of California; San Diego;National Center for Microscopy and Imaging Research - NCMIR has parent organization: Harvard University; Cambridge; United States has parent organization: NIH Blueprint for Neuroscience Research is parent organization of: Licensing issues in software and data is parent organization of: NITRC Enhanced Services is parent organization of: Resource Ontology Discussion Group is parent organization of: NITRC-IR is parent organization of: 1000 Functional Connectomes Project is parent organization of: NYU CSC TestRetest is parent organization of: NITRC Books is parent organization of: NITRC Community is parent organization of: ABIDE is parent organization of: COBRE is parent organization of: Group Sparse Canonical Correlation Analysis is parent organization of: Challenge Competitions Collection is parent organization of: 1000 Functional Connectomes Project |
NIH Blueprint for Neuroscience Research ; NIMH ; NIDA ; NIBIB U24 EB023398; NINDS R44 NS074540 |
PMID:26044860 PMID:18999128 |
Free, Freely available | nif-0000-00202, r3d100010784, r3d100011515 | https://doi.org/10.17616/R3W32N | SCR_003430 | Neuroimaging Informatics Tools and Resources Clearinghouse, , NeuroImaging Tools and Resources Collaboratory, Neuroimaging Informatics Tools Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools and Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools Resources Clearinghouse | 2026-08-01 12:02:11 | 338 | ||||
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ERPwavelab Resource Report Resource Website 1+ mentions |
ERPwavelab (RRID:SCR_014106) | data visualization software, software toolkit, data analysis software, software application, software resource, data processing software | A toolbox developed for multi-channel time-frequency analysis of event related activity of EEG and MEG data. It provides tools for data analysis and visualization of the most commonly used measures of time-frequency transformed event related data as well as data decomposition through non-negative matrix and multi-way (tensor) factorization. The decompositions provided can accommodate additional dimensions like subjects, conditions or repeats and as such they are perfected for group analysis. The toolbox enables tracking of phase locked activity from one channel-time-frequency instance to another as well as tools for artifact rejection in the time-frequency domain. | software toolbox, data analysis, data visualization, eeg data, meg data, plugin, time frequency domain, fourier time domain analysis, temporal wavelet analysis |
is used by: EEGLAB is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Technical University of Denmark; Lyngby; Denmark |
Open source | http://www.erpwavelab.org | SCR_014106 | 2026-08-01 12:04:57 | 9 | |||||||||
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The Bergen fMRI Toolbox Plugin for EEGLab Resource Report Resource Website 1+ mentions |
The Bergen fMRI Toolbox Plugin for EEGLab (RRID:SCR_016335) | software toolkit, data analysis software, software application, software resource, data processing software | Software package as a set of Matlab tools which allow the correction of fMRI-related gradient artifacts from EEG data. Designed to work within the EEGLAB environment, providing a GUI to remove fMRI gradient artifacts from the EEG. Can also be used from the Matlab command line, providing expert users with the ability to use them in custom scripts. | correct, gradient, artifact, data, electrophysiology, functional, magnetic, resonance, imaging, neuroscience |
is related to: EEGLAB is related to: MATLAB has parent organization: University of Bergen; Bergen; Norway |
Free, Available for download, Freely available | SCR_016335 | 2026-08-01 12:05:30 | 1 | ||||||||||
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BVA import/export EEGLAB plugin Resource Report Resource Website 1+ mentions |
BVA import/export EEGLAB plugin (RRID:SCR_016333) | bva-io | software resource, software application, software toolkit | Software package for interfacing the Brain Vision Analyser data files (load/save) for ongoing development of Matlab routines . This package is also compatible with the EEGLAB software, and may be uncompressed in the plugin folder of this software. | interfacing, brain, vision, analyser, data, file, load, save, Matlab, routine, compatible, EEGLAB |
is related to: SourceForge is related to: EEGLAB is related to: MATLAB |
Free, Available for download, Freely available | SCR_016333 | Brain Vision Analyser | 2026-08-01 12:11:08 | 3 | ||||||||
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PeriodAmplitudeAnalysis Resource Report Resource Website |
PeriodAmplitudeAnalysis (RRID:SCR_027418) | software resource, software application | Software application for Period Amplitude Analysis (PAA) for slow wave detection using eeglab. | Period Amplitude Analysis, slow wave detection, | uses: EEGLAB | Free, Available for download, Freely available, | SCR_027418 | 2026-08-01 12:14:14 | 0 | ||||||||||
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Neural Maestro Resource Report Resource Website |
Neural Maestro (RRID:SCR_001563) | Neural Maestro | software toolkit, data access protocol, software application, software resource, software library, web service | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 17, 2016. A C#.NET/C++.NET 4.0 API multi-threaded, parallel class library with CUDA kernels for EEG predictive analytics gleaned from the ModelMaker 2 application. This web service and component library offers functionality to do univariate and multivariate nonlinear time series and frequency based predictive analysis for EEG / Ecog / MEG signals for gaming applications. Neural Maestro works with both EEGLab / BCILab and eConnectome as well as other MATLAB and R packages. It enables one to build highly sophisticated neuroscience applications with little effort in Windows applications. | univariate, multivariate, nonlinear time series, time series, frequency, predictive analysis, eeg, ecog, meg, gaming application, neuroscience, computer gaming, modeling, forecasting, matlab, r, artificial intelligence, analytics, neural assessment |
is related to: EEGLAB is related to: Neural Cipher is related to: BCILAB is related to: ModelMaker is related to: iBIOFind has parent organization: The Cromwell Workshop |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_153440 | SCR_001563 | 2026-08-01 12:01:55 | 0 | ||||||||
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HeadIT Resource Report Resource Website 1+ mentions |
HeadIT (RRID:SCR_005657) | HeadIT | data or information resource, data repository, storage service resource, service resource, data set | Platform for sharing, download, and re-analysis or meta-analysis of sophisticated, fully annotated, human electrophysiological data sets. It uses EEG Study Schema (ESS) files to provide task, data collection, and subject metadata, including Hierarchical Event Descriptor (HED) tag descriptions of all identified experimental events. Visospatial task data also available from, http://sccn.ucsd.edu/eeglab/data/headit.html: A 238-channel, single-subject EEG data set recorded at the Swartz Center, UCSD, by Arnaud Delorme, Julie Onton, and Scott Makeig is al. | electrophysiology, data sharing, eeg, visual-auditory cued attention shift paradigm, adult, early adult human, late adult human, memory task, modified sternberg working memory task, visual, auditory, auditory oddball, memory, task |
uses: HED Tags is related to: EEGLAB has parent organization: University of California at San Diego; California; USA |
Normal, Healthy, Others possible | NIMH R01-MH084819; NINDS R01-NS047293 |
Public, Must agree to Data Use Agreement and Terms of Use., Account required for collaboration and to upload data. | nlx_149081 | http://headit-beta.ucsd.edu/, http://sccn.ucsd.edu/eeglab/data/headit.html | http://HeadIT.org | SCR_005657 | Human Electrophysiology Anatomic Data & Integrated Tools (HeadIT) Resource, Human Electrophysiology Anatomic Data & Integrated Tools Resource, Human Electrophysiology Anatomic Data & Integrated Tools, Human Electrophysiology Anatomic Data and Integrated Tools (HeadIT) Resource | 2026-08-01 12:02:57 | 5 | |||
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EYE-EEG (combined eye-tracking & EEG) Resource Report Resource Website 10+ mentions |
EYE-EEG (combined eye-tracking & EEG) (RRID:SCR_012903) | EYE-EEG | software resource | A plugin for the open-source MATLAB toolbox EEGLAB developed with the goal to facilitate integrated analyses of electrophysiological and oculomotor data. The plugin parses, imports, and synchronizes simultaneously recorded eye tracking data and adds it as extra channels to the EEG. Saccades and fixations can be imported from the eye tracking raw data or detected with an adaptive velocity-based algorithm. Eye movements are then added as new time-locking events to EEGLAB's event structure, allowing easy saccade- and fixation-related EEG analysis (e.g., fixation-related potentials, FRPs). Alternatively, EEG data can be aligned to stimulus onsets and analyzed according to oculomotor behavior (e.g. pupil size, microsaccades) in a given trial. Saccade-related ICA components can be objectively identified based on their covariance with the electrically independent eye tracker. All functions can be accessed via EEGLAB's GUI or called from the command line. | eeg, meg, electrocorticography, matlab, os independent, eye, electrophysiology, oculomotor, eye tracking device |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB has parent organization: Humboldt University of Berlin; Berlin; Germany |
DFG | PMID:21744985 | GNU General Public License | nlx_155755 | http://www.nitrc.org/projects/eye-eeg | SCR_012903 | EYE-EEG: Eye tracking & EEG | 2026-08-01 12:04:53 | 13 | ||||
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EEGVIS Resource Report Resource Website 1+ mentions |
EEGVIS (RRID:SCR_009569) | EEGVIS | data visualization software, software toolkit, software application, data processing software, software resource | A MATLAB toolbox for exploration of multi-channel EEG and other large array-based data sets using multi-scale drill-down techniques. The toolbox can be used directly in MATLAB at any stage in a user's processing pipeline, as a plug in for EEGLAB, or as a standalone precompiled application without MATLAB running. EEGVIS and its supporting packages are freely available under the GNU general public license. The toolbox also supplies a number of extensible base classes for users who wish to develop their own visualizations. | reusable library, eeg, meg, electrocorticography, matlab, statistical operation, visualization |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB has parent organization: University of Texas at San Antonio; Texas; USA |
PMID:22654753 | GNU General Public License | nlx_155749 | http://www.nitrc.org/projects/eegvis | SCR_009569 | 2026-08-01 12:03:44 | 1 | ||||||
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Biositemaps Resource Report Resource Website 1+ mentions |
Biositemaps (RRID:SCR_001976) | Biositemaps | software resource, service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on April 27,2023. Biositemaps represent a mechanism for computational biologists and bio-informaticians to openly broadcast and retrieve meta-data about biomedical data, tools and services (i.e., biomedical resources) over the Internet. All Institutions with an interest in biomedical research can publish a biositemap.rdf file on their Internet site. The technology, developed by the Biositemaps Working Group of the NIH Roadmap National Centers of Biomedical Computing (NCBC), addresses (i) locating, (ii) querying, (iii) composing or combining, and (iv) mining biomedical resources. Each site which intends to contribute to the inventory instantiates a file on its Internet site biositemap.rdf which conforms to a defined RDF schema and uses concepts from the Biomedical Resource Ontology to describe the resources. Each biositemap.rdf file is simply a list of controlled metadata about resources (software tools, databases, material resources) that your organization uses or believes are important to biomedical research. The key enabling technologies are the Information Model (IM) which is the list of metadata fields about each resource (resource_name, description, contact_person, resource_type,...) and the Biomedical Resource Ontology (BRO) which is a controlled terminology for the resource_typeand which is used to improve the sensitivity and specificity of web searches. Biositemaps blend the features of Sitemaps (enabling efficient web-content exploration) and RSS Feeds (a mechanism for wide and effective news dissemination). As a hybrid between Sitemaps and RSS feeds, the Biositemap infrastructure facilitates a decentralized, portable, extensible and computationally tractable generation and consumption of meta-data about existent, revised and new resources for biomedical computation. Web browsers, crawlers and robots can discover, accumulate, process, integrate and deliver Biositemaps content to (human or machine) users in a variety of graphical, tabular, computational formats. Biositemaps content allows such web browsers to pool resource-associated metadata from disparate and diverse sites and present it to the user in an integrated fashion. The Biositemaps protocol provides clues, information and directives for all Biositemap web harvesters that point to the existence and content of such biomedical resources at different sites. | broadcast, data federation, defined rdf schema, infrastructure, meta-data, rdf, retrieve, biomedical, biositemap, sitemap |
lists: Adaptively Sampled Particle Fluids lists: DicomWorks lists: MEDx lists: Medical Image Processing and Visualization lists: Surface-Based Atlases lists: RESNET lists: SurfRelax lists: FEATURE lists: Cardiovascular Model Repository lists: Simtk.org lists: ConTrack lists: Allopathfinder lists: Molecular Simulation Trajectories Archive of a Villin Variant lists: BioPortal lists: SumsDB lists: NeuronDB lists: BrainInfo lists: Protege lists: i2b2 Cross-Institutional Clinical Translational Research project lists: GeneChip Operating Software lists: Honig Lab lists: Proteomics Identifications (PRIDE) lists: ASAP: the Alternative Splicing Annotation Project lists: MiMI Plugin for Cytoscape lists: Substructure Index-based Approximate Graph Alignment lists: Proteome Commons Tranche repository lists: caTIES - Cancer Text Information Extraction System lists: REDCap lists: miniTUBA lists: Einstein-Montefiore ICTR Research Informatics Core lists: T-profiler lists: Stanford Translational Research Integrated Database Environment and Clinical Data Warehouse lists: GCG/SeqWeb lists: Solstice lists: California National Primate Research Center lists: BioGPS: The Gene Portal Hub lists: Blox lists: Subcellular Location Image Finder lists: PeptideAtlas lists: Clair library lists: Lyngby lists: SimTKCore lists: Velos lists: Ingenuity Pathway Analysis lists: Philips lists: Talktech lists: SUN Interface Engine lists: Quadramed - Medicus, Quantim lists: Wisconsin National Primate Research Center lists: i2b2 Research Data Warehouse lists: Merge Healthcare Incorporated lists: Clinical Trial Management Application lists: Cerner Millenium lists: Open Clinical Report Repository lists: Quovadx, Inc. lists: VectorValuedHistogramNormalizer lists: Morphometry BIRN lists: Talairach Daemon lists: LONI Visualization Tool lists: LONI Debabeler lists: LONI Pipeline Processing Environment lists: Brede Wiki lists: medInria lists: FreeSurfer lists: ITK-SNAP lists: VoxBo lists: Ensembl lists: MRIcron lists: Synchronized Histological Image Viewing Architecture lists: LONI ShapeViewer lists: LONI ShapeTools lists: FFT Library lists: NUTMEG lists: bioDBcore lists: Mutant Mouse Resource and Research Center lists: Brainscape lists: MindSeer lists: University of Southern California LONI Software lists: Statistics Online Computational Resource lists: NIH MRI Study of Normal Brain Development lists: Ontology Development and Information Extraction lists: Mindtouch DekiWiki lists: National Mesothelioma Virtual Bank lists: MGH-USC Human Connectome Project lists: Fusion ICA Toolbox lists: Biomedical Resource Ontology lists: Biomedical Informatics Research Network lists: 3D Slicer lists: Analysis of Functional NeuroImages lists: Automated Image Registration lists: TOADS-CRUISE Brain Segmentation Tools lists: BrainImage Software lists: Brede Toolbox lists: Whole Brain Catalog lists: Low Resolution Electromagnetic Tomography lists: Cambridge Brain Activation lists: ModelDB lists: fMRI Data Center lists: EEGLAB lists: 3DViewnix lists: MIPAV: Medical Image Processing and Visualization lists: NeuroLens lists: WFU PickAtlas lists: Protein Subcellular Location Image Database lists: STRIDE Virtual Biospecimen Bank lists: BrainVoyager is related to: Biomedical Resource Ontology is related to: Software Distribution Sets is related to: REX is related to: Rat Genome Database (RGD) has parent organization: National Centers for Biomedical Computing has parent organization: National Institutes of Health is parent organization of: Resource Discovery System |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10583 | SCR_001976 | 2026-08-01 12:10:38 | 1 | ||||||||
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Measure Projection Toolbox Resource Report Resource Website 1+ mentions |
Measure Projection Toolbox (RRID:SCR_002429) | MPT | software resource, software toolkit | This toolbox is an EEGLAB plugin for performing Measure Projection Analysis. Measure Projection Analysis (MPA) is a novel probabilistic multi-subject inference method that overcomes EEG Independent Component (IC) clustering issues by abandoning the notion of distinct IC clusters. Instead, it searches voxel by voxel for brain regions having event-related IC process dynamics that exhibit statistically significant consistency across subjects and/or sessions as quantified by the values of various EEG measures. Local-mean EEG measure values are then assigned to all such locations based on a probabilistic model of IC localization error and inter-subject anatomical and functional differences. | reusable library, eeg, meg, electrocorticography, matlab, statistical operation, surrogate data analysis, visualization, measure projection analysis |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB has parent organization: Swartz Center for Computational Neuroscience |
Free, Available for download, Freely available | nlx_155809 | http://www.nitrc.org/projects/measure_project | SCR_002429 | Measure Projection Toolbox (MPT) | 2026-08-01 12:10:40 | 3 | ||||||
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Libeep EEGLAB plugin Resource Report Resource Website 1+ mentions |
Libeep EEGLAB plugin (RRID:SCR_016334) | software resource, software application, software toolkit | Software as an EEGLAB tool used for LIBEEP recordings. | plugin, library, recording, electrophysiological, data, neuroscience |
is related to: LIBEEP is related to: EEGLAB is related to: MATLAB |
Free, Available for download, Freely available | SCR_016334 | ANTeepimport | 2026-08-01 12:11:07 | 1 | |||||||||
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SoftCite Resource Report Resource Website |
SoftCite (RRID:SCR_024411) | project portal, data or information resource, portal, knowledge base, software resource | Gold standard dataset of software mentions in research publications. Provides dataset of annotated software mentions from full text academic literature in biomedicine and economics directly converted from published PDFs with reproducible infrastructure. Includes provenance, and is formatted for immediately usefulness in NLP. Useful for supervised learning at scale. | Gold standard dataset, software mentions, research publications, annotated software mentions, full text academic literature, |
lists: ProteinPilot lists: ROCit lists: survivalROC lists: GIFT lists: PyWavelets lists: pRRophetic lists: GOplot lists: Rgdal lists: riskRegression lists: RNAfold lists: RNALocate lists: pyPCcazip lists: ScanProsite lists: RapGreen lists: ABySS lists: AMBER lists: ANNOVAR lists: ASAP lists: ASPicDB lists: AStalavista lists: ATSAS lists: Alien hunter lists: Adobe Photoshop lists: Affymetrix lists: Augustus lists: Argus lists: Adobe Illustrator lists: ART lists: AutoDock Vina lists: AutoDock lists: ANALYZE lists: BLASTClust lists: arrayQualityMetrics lists: BLASTN lists: BLASTX lists: BLASTP lists: Bowtie lists: Autogrid lists: BRB-ArrayTools lists: BEDTools lists: BWA lists: BioEdit lists: BRASS lists: Bioconductor lists: BioExtract lists: BaCelLo lists: BioMoby lists: Brain Extraction Tool lists: Bowtie 2 lists: BoxPlotR lists: biomaRt lists: BioPerl lists: CANGS lists: CFX Manager lists: CEAS lists: BlobFinder lists: CLC Genomics Workbench lists: BREAKDANCER lists: CASAVA lists: CLC Main Workbench lists: ClustalW lists: Clustal W2 lists: ComBat lists: CCP4 lists: Blender lists: Coot lists: CGView lists: COMSOL Multiphysics lists: CTFFIND lists: CalcuSyn lists: ChIPpeakAnno lists: Chimera lists: CVODE lists: DAVID lists: Cufflinks lists: caret lists: ClueGO lists: Cluster lists: Clocklab lists: DIANA-mirPath lists: Cytoscape lists: EMAN lists: E-Prime lists: DESeq2 lists: Definiens Developer XD lists: Eigensoft lists: EMBOSS lists: Ensembl lists: DIALIGN lists: Design-Expert lists: EndNote lists: CMAP lists: EEGLAB lists: CMap lists: Epi Info lists: FASTA lists: Ensembl Genome Browser lists: Epik lists: FACS lists: FCS Express lists: Flowlogic lists: FSL lists: FLASH lists: FATCAT lists: FastQC lists: G*Power lists: GOLD lists: FGENESH lists: FreeSurfer lists: FlowJo lists: GeneTools lists: Galaxy lists: GATK lists: ELDA lists: GraphPad lists: GRADEpro lists: Fiji lists: Gblocks lists: FigTree lists: GENIE lists: GBrowse lists: Gemma lists: GeneChip Operating Software lists: GeneMapper lists: GeneMarker lists: GenABEL lists: GenePattern lists: GraphPad Prism lists: GenePix Pro lists: Google lists: Genesis lists: Hologic lists: GeneSpring GX lists: GeneVenn lists: HaploReg lists: Google Scholar lists: HALO lists: Gwyddion lists: IMAGIC lists: HKL-2000 lists: Glide lists: Glimmer lists: I-TASSER lists: GenomeStudio lists: IMOD lists: Haploview lists: Hmmer lists: Hydra lists: IUPRED lists: HomeCageScan lists: Geneious lists: IGOR Pro lists: IMPUTE lists: Infernal lists: Image-Pro Plus lists: JASP lists: LSM Image Examiner lists: Imaris lists: Image Pro Plus lists: ImageQuant lists: ImageJ lists: Integrative Genomics Viewer lists: jcvi lists: InterProScan lists: KaleidaGraph lists: Ligprep lists: Heidelberg Eye Explorer lists: JMP lists: Ingenuity Pathways Knowledge Base lists: Leica QWin lists: JCB DataViewer lists: Jalview lists: LigandScout lists: Ingenuity Pathway Analysis lists: LabView lists: Kepler lists: MAFFT lists: Jmol lists: 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NOTUNG lists: OpenBUGS lists: Optimization Toolbox lists: ProgRes Capture Pro lists: Ocular lists: Umediation lists: Nano Measurer lists: PHYLDOG lists: VSEARCH lists: WinNonlin lists: WHONET lists: ToposPro lists: Treerecs lists: Agilent Seahorse Wave lists: SimPhy lists: TomoStudio lists: Mutation Assessor lists: Stem lists: SRAMP lists: CRISPResso2 lists: geepack lists: Evalue lists: DAGitty lists: FastMulRFS lists: ggridges lists: gamm4 lists: AutoRT lists: CopyKAT lists: Inference of CRISPR Edits lists: classInt lists: ASTRAL-Pro lists: maftools lists: mitml lists: CMplot lists: MetaPSICOV lists: LaCyTools lists: MADOKA lists: Kaplan Meier Plotter lists: IntFOLD lists: ModFOLD lists: lDDT has parent organization: University of Texas at Austin; Texas; USA |
Sloan Foundation | DOI:10.1002/asi.24454 | Free, Available for download, Freely available | https://github.com/softcite/softcite_dataset_v2, https://zenodo.org/record/7995565 | SCR_024411 | Software Citation | 2026-08-01 12:08:27 | 0 | ||||||
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BCILAB Resource Report Resource Website 10+ mentions |
BCILAB (RRID:SCR_007013) | BCILAB | source code, software resource | Open Source MATLAB toolbox and EEGLAB plugin for the design, prototyping, testing, experimentation with, and evaluation of Brain-Computer Interfaces (BCIs), and other systems in the same computational framework. It facilitates the design and development of new methods for cognitive state estimation and their use in both offline data analysis and real-time applications. BCILAB includes an easily extensible collection of currently over 100 methods from the literature (covering signal processing, machine learning and BCI-specific methods). Aside from supporting advanced BCI research, a special aim of BCILAB is to facilitate the adoption of machine learning and advanced statistical modeling for functional neuroimaging purposes in tandem with the EEGLAB platform. The toolbox offers multiple different interfaces which link to the same backend functionality, including a GUI, scripting support (MATLAB-based), APIs for real-time processing, and a variety of extension component interfaces. MATLAB programming is not strictly necessary, as most BCILAB features can be accessed from the GUI, although it is required for batch scripting and custom extensions. The strength of MATLAB-based software lies in its resources for leading-edge scientific computing, as well as in the good support for rapid prototyping, but BCI systems developed in it can be used for real-time out-of-lab experimentation, and can in principle be deployed without the need for a MATLAB license. However, due to the complexity and overhead of the MATLAB environment, the system is best used as a research platform, and not as a product development environment -- end-user software is ideally re-implemented in a compiled language, after a suitable approach has been identified and extensively tested. The process of identifying and testing an approach involves more than just computation, but also data exploration and investigation - an area which is helped by the deep integration with the EEGLAB platform. In the future, this integration will be further strengthened, bringing rich statistical learning and signal processing into routine EEG analysis workflows. The toolbox has been developed by C. Kothe at the Swartz Center, inspired by the preceding PhyPA BCI toolbox created by C. Kothe and T. Zander at the Chair for Human-Machine Systems, Berlin Institute of Technology. | brain-computer interface, discriminant analysis, temporal integration, matlab, eeg, meg, electrocorticography, statistical operation, temporal transformation, signal processing, machine learning |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB is related to: Neural Maestro has parent organization: Swartz Center for Computational Neuroscience |
GNU General Public License | nlx_153810 | http://www.nitrc.org/projects/bcilab | SCR_007013 | 2026-08-01 12:11:48 | 22 | |||||||
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Dusk2Dawn Resource Report Resource Website |
Dusk2Dawn (RRID:SCR_027417) | software resource, software application | Software plugin for 'EEGLAB' MATLAB toolbox, which allows to whole-night sleep EEG using Artifact Subspace Reconstruction (ASR). Used to implement Artifact Subspace Reconstruction cleaning with whole-night sleep EEG. Automatic cleaning of whole-night sleep electroencephalogram using Artifact Subspace Reconstruction. | whole-night sleep electroencephalogram, automatic cleaning of whole-night sleep electroencephalogram, Artifact Subspace Reconstruction, implement Artifact Subspace Reconstruction cleaning, whole-night sleep EEG, | is a plug in for: EEGLAB | Free, Available for download, Freely available, | SCR_027417 | 2026-08-01 12:14:21 | 0 |
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