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Resource Summary Report New Search

Resource Name

Smart-seq2 Single Nucleus Multi Sample Pipeline

RRID:SCR_021312 RRID Copied

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Smart-seq2 Single Nucleus Multi Sample Pipeline (RRID:SCR_021312)

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Resource Information

URL: https://github.com/broadinstitute/warp/tree/master/pipelines/skylab/smartseq2_single_nucleus_multisample

Proper Citation: Smart-seq2 Single Nucleus Multi Sample Pipeline (RRID:SCR_021312)

Description: Software pipeline for single-nucleus RNAseq data generated by Smart-seq2 assays.Used to simultaneously process multiple libraries of single nuclei Smart-seq2 and Smart-seq4 data. For each library (nucleus), the pipeline trims paired FASTQ files, aligns trimmed reads to the genome, counts intronic and exonic reads, and calculates quality control metrics. Counts and metrics for all libraries are combined into merged Loom formatted count matrix.

Synonyms: Multi-snSS2, Smart-seq2 Single Nucleus Multi-Sample Pipeline

Resource Type: software toolkit, software resource, data processing software, software application

Keywords: snRNAseq data, Smart-seq2 assays, single nucleus, multi sample, WARP repository

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This resource

is used by	BICCN
has parent organization	Broad Institute
has parent organization	Allen Institute
has parent organization	University of California at San Diego; California; USA
is organization facet of	Terra

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Data and Source Information

Source: SciCrunch Registry

Organization Overview

Smart-seq2 Single Nucleus Multi Sample Pipeline is part of the following organization(s):

BICCN (RRID:SCR_015820)

Terra (RRID:SCR_021648)

Smart-seq2 Single Nucleus Multi Sample Pipeline

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