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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
IMPUTE
 
Resource Report
Resource Website
500+ mentions
IMPUTE (RRID:SCR_009245) IMPUTE software application, software resource Software application for estimating (imputing) unobserved genotypes in SNP association studies. The program is designed to work seamlessly with the output of the genotype calling program CHIAMO and the population genetic simulator HAPGEN, and it produces output that can be analyzed using the program SNPTEST. (entry from Genetic Analysis Software) gene, genetic, genomic is listed by: Genetic Analysis Software
is listed by: SoftCite
nlx_154411 SCR_009245 2026-08-20 09:27:58 639
Genetic Analysis Software
 
Resource Report
Resource Website
1+ mentions
Genetic Analysis Software (RRID:SCR_013155) GAS catalog, data or information resource, data set, database, software resource THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 4th,2023. Listing of computer software for the gene mapping community on the following topics: genetic linkage analysis for human pedigree data, QTL analysis for animal/plant breeding data, genetic marker ordering, genetic association analysis, haplotype construction, pedigree drawing, and population genetics. The inclusion of a program should not be interpreted as an endorsement to that program from us. In the last few years, new technology produces new types of genetic data, and the scope of genetic analyses change dramatically. It is no longer obvious whether a program should be included or excluded from this list. Topics such as next-generation-sequencing (NGS), gene expression, genomics annotation, etc. can all be relevant to a genetic study, yet be specialized topics by themselves. Though programs on variance calling from NSG can be in, those can sequence alignment might be out; programs on eQTL can be in, those on differential expression might be out. This page was created by Dr. Wentian Li, when he was at Columbia University (1995-1996). It was later moved to Rockefeller University (1996-2002), and now takes its new home at North Shore LIJ Research Institute (2002-now). The present copy is maintained by Jurg Ott as a single file. More than 240 programs have been listed by December 2004, more than 350 programs by August 2005, close to 400 programs by December 2006, and close to 480 programs by November 2008, and over 600 programs by October 2012. A version of the searchable database was developed by Zhiliang Hu of Iowa State University, and a recent round of updating was assisted by Wei JIANG of Harbin Medical School. Some earlier software can be downloaded from EBI: ftp://ftp.ebi.ac.uk/pub/software/linkage_and_mapping/ (Linkage and Mapping Software Repository), and http://genamics.com/software/index.htm may contain archived copy of some programs. gene mapping, gene, genetic, genomic, model, modeling, software program, genetic linkage analysis, qtl analysis, genetic marker order, genetic association analysis, haplotype construction, pedigree drawing, population genetics is used by: NIF Data Federation
lists: EM-DECODER
lists: ENTROPY BLOCKER
lists: SOAP
lists: ADEGENET
lists: 2LD
lists: SQTL
lists: POLYMORPHISM
lists: EDAC
lists: FEST
lists: GENEHUNTER SAD
lists: COMDS
lists: CHAPLIN
lists: CRIMAP
lists: DCHIP LINKAGE
lists: FLOSS
lists: HAP 1
lists: HAPSCOPE
lists: LDB/LDB+
lists: LOCUSMAP
lists: MRH
lists: PEDIGREE-VISUALIZER
lists: PEDPHASE
lists: QTL CAFE
lists: RHMAPPER
lists: R/GC, R/GCF
lists: R/GWAPOWER
lists: R/WEIGHTED FDR
lists: SIMM
lists: SOLAR
lists: TDTHAP
lists: HWESTRATA
lists: TDT-PC
lists: EQTL EXPLORER
lists: GAS2
lists: LDMET
lists: LAMBDAA
lists: EIGENSOFT/EIGENSTRAT
lists: Happy
lists: LAMP
lists: CLUSTAG
lists: OSA
lists: SIMIBD
lists: SNPSTATS
lists: Haploview
lists: QGene
lists: PAWE-3D
lists: MILD
lists: PEDPLOT
lists: GS-EM
lists: PEDSCRIPT
lists: Multipoint Identical-by-descent Method
lists: PARENTE
lists: Integrated Software
lists: PEDRAW/WPEDRAW
lists: POPDIST
lists: TDTASP
lists: TDTPOWER
lists: TDT/S-TDT
lists: HAPLOBLOCKFINDER
lists: HAPMIXMAP
lists: Genotype-IBD Sharing Test
lists: LDGROUP
lists: LDHAT
lists: LDMAP
lists: LDHEATMAP
lists: LDSELECT
lists: LINKAGE
lists: LDSUPPORT
lists: FASTLINK
lists: LINKAGE - CEPH
lists: LSP
lists: Whap
lists: TREESCAN
lists: Graphical Overview of Linkage Disequilibrium
lists: MAIA
lists: MULTIMAP
lists: R/ADEGENET
lists: R/ENTROPY BLOCKER
lists: BEAM
lists: BMAPBUILDER
lists: POPGEN
lists: RTDT
lists: R/SPECTRAL-GEM
lists: R/STEPWISE
lists: HAPLOCLUSTERS
lists: TKMAP
lists: CLUMP
lists: FAMOZ
lists: INTEGRAYEDMAP
lists: SIBMED
lists: POOLSCORE
lists: LDA
lists: LAPSTRUCT
lists: BETA
lists: ALTree
lists: TRANSMIT
lists: ETDT
lists: R/TDTHAP
lists: RVTESTS
lists: S
lists: ET-TDT
lists: ILR
lists: MAPCREATOR
lists: MAPMAKER/SIBS
lists: MAP MANAGER QT
lists: MGA-MAPF2
lists: Pedigree-Draw
lists: FASTMAP (1)
lists: ASPEX
lists: PEDJAVA
lists: PEDPEEL
lists: SIMCOAL
lists: SNPHAP
lists: SNPHARVESTER
lists: SNP-HWE
lists: TAGSNP
lists: FASTMAP (2)
lists: FASTSLINK
lists: GASP
lists: GENOGRAM-MAKER
lists: GENEHUNTER++SAD
lists: GENEPI.JAR
lists: BDGEN
lists: TLINKAGE
lists: GENOME
lists: EASYPOP
lists: GENOMESIMLA
lists: TRAP
lists: CARTHAGENE
lists: ACT
lists: ADMIXMAP
lists: 2DMAP
lists: ALBERT
lists: 2SNP
lists: AGEINF
lists: ALLASS
lists: PEDIGREEQUERY
lists: PATH
lists: MULTIQTL
lists: SPERMSEG
lists: FASTER
lists: Platypus
lists: KIN
lists: SNP ASSISTANT
lists: GRONLOD
lists: COMBIN
lists: ARLEQUIN
lists: SEGPATH
lists: JENTI
lists: SCOUT
lists: HAPLOREC
lists: UNPHASED
lists: POWER
lists: HAPLO 1
lists: HAPLO 2
lists: CHIP2SPELL
lists: MAP MANAGER QTX
lists: G-MENDEL
lists: ASSOCIATIONVIEWER
lists: WHICHRUN
lists: GENECLASS
lists: MAREYMAP
lists: HELIXTREE
lists: SVCC
lists: GENEHUNTER-MODSCORE
lists: FAMHAP
lists: BAMA
lists: WEBQTL
lists: HAPLOVISUAL
lists: CASPAR
lists: GC/GCF
lists: MIXSCORE
lists: POWQ
lists: QTLNetwork
lists: SIMULAPLOT
lists: SQTDT/SPDT
lists: FESTA
lists: BOTTLENECK
lists: PAP
lists: QUANTO
lists: R/QTL
lists: SNPEM
lists: GENEPOOL
lists: EPISTACY
lists: VITESSE
lists: LEA
lists: DMAP
lists: MOSCPHASER
lists: UMAKE
lists: TDT-AE
lists: HAPLOWSER
lists: STEPC
lists: RECORD
lists: QUTIE
lists: R/COMPOSITELD
lists: FINESSE
lists: R/EHP
lists: R/HCLUST
lists: STEPWISE
lists: genehunter-imprinting
lists: PBAT
lists: R/BARS
lists: HARDY
lists: R/ARP.GEE
lists: R/COVIBD
lists: STRAT
lists: TREELD
lists: TUNA
lists: SIBSIM
lists: IGG
lists: ALLELIX
lists: ALLEGRO
lists: ALOHOMORA
lists: ALP
lists: AMELIA
lists: ANALYZE
lists: ANCESTRY
lists: APE
lists: BARS
lists: APL-OSA
lists: APM
lists: ARIEL
lists: GENOMIZER
lists: ASP/ASPSHARE
lists: BIMBAM
lists: BIOIDE
lists: BIOLAD-DB
lists: BLADE
lists: BLOCK
lists: BOOLD
lists: BOOSTRAPPER
lists: BPPH
lists: BQTL
lists: DNABASER
lists: Calculator for Association with Two Stage design
lists: CC-QLS
lists: CCRAVAT
lists: CCREL
lists: CEPH2CRI
lists: CEPH2MAP
lists: EVOKER
lists: CFC
lists: CHECKHET
lists: MATLINK
lists: CHECKMATRIX
lists: CHIAMO
lists: CHROMOSCAN
lists: CHROMOSEG
lists: COPE
lists: HCLUST
lists: COVIBD
lists: CRIMAP-PVM
lists: CROSSFIND
lists: DGENE
lists: EHPLUS
lists: DHSMAP
lists: DISENTANGLER
lists: MAKEPED
lists: DOLINK
lists: DPPH
lists: GREGOR
lists: EAGLET
lists: EASYLINKAGE/EASYLINKAGE-PLUS
lists: EH
lists: EHAP
lists: EHP
lists: EMLD
lists: EPDT
lists: ERPA
lists: EXOMEPICKS
lists: R/META
lists: FASTEHPLUS
lists: FASTLINK
lists: FBAT
lists: FINETTI
lists: FIRSTORD
lists: FISHER
lists: GAIA
lists: GAP
lists: GAS
lists: GCHAP
lists: GDA
lists: GEMS
lists: GENECOUNTING
lists: GENEFINDER
lists: GENEHUNTER
lists: GENEHUNTER-IMPRINTING
lists: GENEHUNTER-PLUS
lists: GENEPOP
lists: GENERECON
lists: GENESPRING GT
lists: GENIE
lists: GENETIC POWER CALCULATOR
lists: GENETSIM
lists: GENOOM
lists: GENEVAR
lists: GENEWEAVER
lists: GENOCHECK
lists: GENOPROOF
lists: GENTOOLS
lists: GEST
lists: GEVALT
lists: GGT
lists: GHOST
lists: GLIDERS
lists: GLUE
lists: GMA
lists: GMCHECK
lists: GSMA
lists: GTOOL
lists: GWAPOWER
lists: HAP 2
lists: HAPAR
lists: HAPASSOC
lists: HAPBLOCK
lists: HAPGEN
lists: HAPINFERX
lists: HAPLOBLOCK
lists: HAPLOBUILD
lists: HAPLOPOOL
lists: HAPLORE
lists: HAPLO.STAT
lists: HAPLOT
lists: HAPLOTTER
lists: TWOLOC
lists: HAPLOTYPE ESTIMATION
lists: HAPLOTYPER
lists: HAPMINER
lists: HAP-SAMPLE
lists: HAPSIMU
lists: HIT
lists: HOMOG/HOMOGM
lists: HOTSPOTTER
lists: HPLUS
lists: HS-TDT
lists: HTR
lists: HTSNPER
lists: MDR-PDT
lists: INTERSNP
lists: IMPUTE
lists: NOPAR
lists: JLIN
lists: JOINMAP
lists: JPSGCS
lists: J/QTL
lists: KING
lists: LAMARC
lists: LINKAGE-IMPRINT
lists: LINKBASE
lists: LIPED
lists: LNKTOCRI
lists: LOCUSZOOM
lists: LOGINSERM ESTIHAPLO
lists: LOH-LINKAGE
lists: LOKI
lists: LOT
lists: L-POP
lists: LRP
lists: LRTAE
lists: LTSOFT
lists: MADMAPPER
lists: Marker And Gene Interpolation and Correlation
lists: MALDSOFT
lists: MAMA
lists: MANTEL-STRUCT
lists: MAP/MAP+/MAP+H/MAP2000
lists: MAPCHART
lists: MIDAS
lists: MAPDISTO
lists: MAPDRAW
lists: MAPINSPECT
lists: MAPL
lists: MARGARITA
lists: MDBLOCKS
lists: MAPMAKER/EXP
lists: MAPMAKER/HOMOZ
lists: MAPMAKER/QTL
lists: MAPQTL
lists: MCQTL
lists: MEGA2
lists: MEGASNPHUNTER
lists: MENDEL
lists: MERLIN
lists: MFLINK
lists: MINIMAC
lists: MINSAGE
lists: MITPENE
lists: MKGST
lists: MMDRAWER
lists: MLBGH
lists: MLD
lists: MLR-TAGGING
lists: PEDMANAGER
lists: SAGE
lists: MPDA
lists: MULTIDISEQ
lists: MULTIMAPPER
lists: MULTIMAPPER/OUTBRED
lists: MULTIPOPTAGSELECT
lists: MULTISIM
lists: MUTAGENESYS
lists: NOCOM
lists: NUCULAR
lists: ONEMAP
lists: OSIRIS
lists: P ACT
lists: PASS PEDIGREE
lists: PAWE
lists: PDA
lists: PDPSYS
lists: PDT
lists: PED
lists: PEDAGREE
lists: PEDCHECK
lists: PEDSTATS
lists: PEDSYS
lists: PEDVIZAPI
lists: PEER
lists: PHASE
lists: PLABSIM
lists: PL-EM
lists: POINTER
lists: POOL STR
lists: POWERMARKER
lists: POWERTRIM
lists: POWTEST
lists: PREPLINK
lists: PREST
lists: PROBMAX
lists: PROC QTL
lists: PROFILER
lists: PRT
lists: PSAT
lists: SAS/GENETICS
lists: PSEUDO
lists: PSEUDOMARKER
lists: PSEUDOMARKER.M
lists: R/LDHEATMAP
lists: QTL-ALL
lists: QTL Cartographer
lists: QTL EXPRESS
lists: QU-GENE
lists: RISCALW
lists: RC-TDT
lists: REAPER
lists: RELATIVE
lists: RELATIVEFINDER
lists: RELCHECK
lists: RELPAIR
lists: RELTYPE
lists: RHMAP
lists: ROMPREV
lists: ROSATTA SYLLEGO SYSTEM
lists: R/GAP
lists: R/HAPASSOC
lists: R/IBDREG
lists: R/LAPSTRUCT
lists: R/LDGROUP
lists: R/LUCA
lists: R/METASIM
lists: R/ONEMAP
lists: R/PIAGE
lists: R/POOLSCORE
lists: R/POPGEN
lists: R/QTLBIM
lists: R/SNP.PLOTTER
lists: SDMINP
lists: SELSIM
lists: SEQUENCE LD/SEQUENCE LDHOT
lists: SIBERROR
lists: SIBLINK
lists: SIB-PAIR
lists: SILCLOD
lists: SIMLA
lists: SNP CHART
lists: SIMLINK
lists: SIMPED
lists: SIMPLE
lists: SIMULA
lists: SIMULATE
lists: SIMUPOP
lists: SIMWALK
lists: START
lists: SKAT
lists: SLINK
lists: SMOOTH
lists: Suite of Nucleotide Analysis Programs
lists: SNAP 3
lists: SNPALYZE
lists: SNPFILE
lists: SNPLINK
lists: SNPP
lists: SNP.PLOTTER
lists: SNPTEST
lists: SPAM
lists: SPECTRAL-GEM
lists: SPERM
lists: SPIP
lists: SPLAT
lists: TAGSTER
lists: SPLINK
lists: SSAHASNP
lists: SUMSTAT
lists: SUP
lists: SWEEP
lists: TAGGER
lists: TFPGA
lists: TREESELECT
lists: UNKNOWN
lists: UTIL
lists: WHAIT
lists: ZAPLO
lists: HAPBLOCK 2
lists: PLABQTL
lists: TASSEL
lists: MCLEEPS
lists: SASGENE
lists: PANGAEA
lists: TOMCAT
lists: SCORE-SEQ
lists: SASQUANT
lists: QMSIM
lists: PIAGE
lists: PEDPACK
lists: INSEGT
lists: IBDREG
lists: GLFSINGLE/GLFTRIO/GLFMULTIPLES
lists: GGSD
lists: ECLIPSE
lists: CHROMSCAN
lists: COMPOSITELD
lists: BOOST
lists: ARP.GEE
lists: BOREL
lists: GASSOC
lists: MENDELSOFT
lists: PLINK/SEQ
lists: POLYPHEN
lists: SPREG
lists: MOLKIN
lists: PRESTO: Genetic Association Analysis Software
lists: ENDOG
lists: BEAGLECALL
lists: GWASELECT
lists: HEGESMA
lists: SNIPPEEP
lists: TAGIMPUTE
lists: SNPMSTAT
lists: SNP HITLINK
lists: MECPM
lists: R/FEST
lists: MAOS
lists: SUPERLINK
lists: PEDFIDDLER
lists: VG
lists: HAPSTAT
lists: QTDT
lists: GRIDQTL
lists: VH
lists: R/QTLDESIGN
lists: PyPop
lists: ANTMAP
lists: MDR
lists: WEIGHTED FDR
lists: THESIAS
lists: DMLE
lists: SGS
lists: BAYESFST
lists: HWMET
lists: GRR
lists: AUTOSCAN
lists: TRIMHAP
lists: ILLUMINUS
lists: PELICAN
lists: HAPLOPAINTER
lists: HOMOZYGOSITYMAPPER
lists: GERMLINE
lists: PLINK
lists: MACH 1.0
lists: BEAGLE
lists: BIRDSUITE
lists: BREAKDANCER
lists: CAROL
lists: CASAVA
lists: CYRILLIC
lists: DINDEL
lists: GenABEL
lists: GATK
lists: PEDIGRAPH
lists: MADELINE
lists: METAL
lists: OLORIN
lists: PEDHUNTER
lists: POLYMUTT
lists: SAMTOOLS
lists: SNAP - SNP Annotation and Proxy Search
lists: STRUCTURE
lists: SVA
lists: SYZYGY
lists: VAAST
lists: Hapmix
lists: Ancestrymap
lists: Hmmer
lists: PROGENY
lists: VarScan
lists: MORGAN
lists: CMAP
lists: SIMHAP
lists: SIFT
lists: ANNOVAR
lists: Body Mass Index Calculator
lists: PolyPhen: Polymorphism Phenotyping
has parent organization: Feinstein Institute for Medical Research
has parent organization: Iowa State University; Iowa; USA
THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-33506 http://lab.rockefeller.edu/ott/geneticsoftware http://linkage.rockefeller.edu/soft/ SCR_013155 An Alphabetic List of Genetic Analysis Software 2026-08-21 12:39:56 9
SoftCite
 
Resource Report
Resource Website
SoftCite (RRID:SCR_024411) data or information resource, knowledge base, portal, project portal, software resource Gold standard dataset of software mentions in research publications. Provides dataset of annotated software mentions from full text academic literature in biomedicine and economics directly converted from published PDFs with reproducible infrastructure. Includes provenance, and is formatted for immediately usefulness in NLP. Useful for supervised learning at scale. Gold standard dataset, software mentions, research publications, annotated software mentions, full text academic literature, lists: ProteinPilot
lists: ROCit
lists: survivalROC
lists: GIFT
lists: PyWavelets
lists: pRRophetic
lists: GOplot
lists: Rgdal
lists: riskRegression
lists: RNAfold
lists: RNALocate
lists: pyPCcazip
lists: ScanProsite
lists: RapGreen
lists: ABySS
lists: AMBER
lists: ANNOVAR
lists: ASAP
lists: ASPicDB
lists: AStalavista
lists: ATSAS
lists: Alien hunter
lists: Adobe Photoshop
lists: Affymetrix
lists: Augustus
lists: Argus
lists: Adobe Illustrator
lists: ART
lists: AutoDock Vina
lists: AutoDock
lists: ANALYZE
lists: BLASTClust
lists: arrayQualityMetrics
lists: BLASTN
lists: BLASTX
lists: BLASTP
lists: Bowtie
lists: Autogrid
lists: BRB-ArrayTools
lists: BEDTools
lists: BWA
lists: BioEdit
lists: BRASS
lists: Bioconductor
lists: BioExtract
lists: BaCelLo
lists: BioMoby
lists: Brain Extraction Tool
lists: Bowtie 2
lists: BoxPlotR
lists: biomaRt
lists: BioPerl
lists: CANGS
lists: CFX Manager
lists: CEAS
lists: BlobFinder
lists: CLC Genomics Workbench
lists: BREAKDANCER
lists: CASAVA
lists: CLC Main Workbench
lists: ClustalW
lists: Clustal W2
lists: ComBat
lists: CCP4
lists: Blender
lists: Coot
lists: CGView
lists: COMSOL Multiphysics
lists: CTFFIND
lists: CalcuSyn
lists: ChIPpeakAnno
lists: Chimera
lists: CVODE
lists: DAVID
lists: Cufflinks
lists: caret
lists: ClueGO
lists: Cluster
lists: Clocklab
lists: DIANA-mirPath
lists: Cytoscape
lists: EMAN
lists: E-Prime
lists: DESeq2
lists: Definiens Developer XD
lists: Eigensoft
lists: EMBOSS
lists: Ensembl
lists: DIALIGN
lists: Design-Expert
lists: EndNote
lists: CMAP
lists: EEGLAB
lists: CMap
lists: Epi Info
lists: FASTA
lists: Ensembl Genome Browser
lists: Epik
lists: FACS
lists: FCS Express
lists: Flowlogic
lists: FSL
lists: FLASH
lists: FATCAT
lists: FastQC
lists: G*Power
lists: GOLD
lists: FGENESH
lists: FreeSurfer
lists: FlowJo
lists: GeneTools
lists: Galaxy
lists: GATK
lists: ELDA
lists: GraphPad
lists: GRADEpro
lists: Fiji
lists: Gblocks
lists: FigTree
lists: GENIE
lists: GBrowse
lists: Gemma
lists: GeneChip Operating Software
lists: GeneMapper
lists: GeneMarker
lists: GenABEL
lists: GenePattern
lists: GraphPad Prism
lists: GenePix Pro
lists: Google
lists: Genesis
lists: Hologic
lists: GeneSpring GX
lists: GeneVenn
lists: HaploReg
lists: Google Scholar
lists: HALO
lists: Gwyddion
lists: IMAGIC
lists: HKL-2000
lists: Glide
lists: Glimmer
lists: I-TASSER
lists: GenomeStudio
lists: IMOD
lists: Haploview
lists: Hmmer
lists: Hydra
lists: IUPRED
lists: HomeCageScan
lists: Geneious
lists: IGOR Pro
lists: IMPUTE
lists: Infernal
lists: Image-Pro Plus
lists: JASP
lists: LSM Image Examiner
lists: Imaris
lists: Image Pro Plus
lists: ImageQuant
lists: ImageJ
lists: Integrative Genomics Viewer
lists: jcvi
lists: InterProScan
lists: KaleidaGraph
lists: Ligprep
lists: Heidelberg Eye Explorer
lists: JMP
lists: Ingenuity Pathways Knowledge Base
lists: Leica QWin
lists: JCB DataViewer
lists: Jalview
lists: LigandScout
lists: Ingenuity Pathway Analysis
lists: LabView
lists: Kepler
lists: MAFFT
lists: Jmol
lists: ImageScope
lists: MACS
lists: Maq
lists: MUMmer
lists: MATLAB
lists: Mimics
lists: MACH
lists: MCODE
lists: Mascot
lists: Maestro
lists: MSQuant
lists: MediaWiki
lists: MINC
lists: MRIcron
lists: MOE
lists: ModFit LT
lists: LIMMA
lists: MassLynx
lists: mitopred
lists: MrBayes
lists: MolProbity
lists: MUSCLE
lists: MutationAssessor
lists: MaxQuant
lists: Minitab
lists: MODELLER
lists: MetaboAnalyst
lists: MedCalc
lists: Origin
lists: MPlus
lists: MutationTaster
lists: MuTect
lists: Multi Gauge
lists: NIA Array Analysis
lists: NIH Image
lists: Phenix
lists: MycoBank
lists: OpenClinica
lists: Nexus
lists: OMTools
lists: NIS-Elements
lists: PAST
lists: NVivo
lists: PRISM (Stanford database)
lists: Metscape
lists: PROCHECK
lists: oligo
lists: OpenEpi
lists: Pathway Commons
lists: Nanoparticle Tracking Analysis
lists: Openlab
lists: PLINK
lists: PAUP
lists: NONMEM
lists: PREFAB
lists: NetworkX
lists: PeptideProphet
lists: Primer Designer
lists: PhyML
lists: PASS
lists: PyMOL
lists: PSIPRED
lists: PROFILER
lists: PHYLIP
lists: Phobius
lists: Prime
lists: Phyutility
lists: Picard
lists: ProteinProphet
lists: Phaser
lists: ProSAS
lists: PostgreSQL
lists: Primer-BLAST
lists: ProteinLynx Global Server
lists: QUANTO
lists: Primer Express
lists: Primer3Plus
lists: ProtTest
lists: ProbCons
lists: Primer3
lists: Poretools
lists: Protein preparation Wizard
lists: QmRLFS-finder
lists: PicTar
lists: RevMan
lists: Pipeline Pilot
lists: QIIME
lists: PRISMA
lists: REDCap
lists: RAxML
lists: Proteome Discoverer
lists: Research Randomizer
lists: SPARTAN
lists: SPSS
lists: RNAstructure
lists: Refmac
lists: QuantPrime
lists: Prodigal
lists: RepeatModeler
lists: Ringo
lists: SQLite
lists: SAGE
lists: Rhinoceros
lists: SAMTOOLS
lists: SPAdes
lists: RepeatMasker
lists: SEDFIT
lists: STATISTICA
lists: RNAhybrid
lists: SlideBook
lists: STRUCTURE
lists: SABmark
lists: SPM
lists: Stata
lists: RStudio
lists: SciPy
lists: Scion Image
lists: Simulink
lists: TAGGER
lists: TopHat
lists: SAM
lists: ShortRead
lists: SIFT
lists: SCAN
lists: SignalP
lists: Scopus
lists: Strelka2
lists: Trans-ABySS
lists: Statgraphics Centurion
lists: T-Coffee
lists: Statistical Analysis System
lists: TargetScan
lists: UCHIME
lists: Sequencher
lists: SigmaStat
lists: UCSC Genome Browser
lists: affy
lists: Taverna
lists: MBF BioScience: Stereo Investigator
lists: Trimmomatic
lists: Vmatch
lists: WFU PickAtlas
lists: SigmaPlot
lists: X!Tandem
lists: STAR
lists: TASSEL
lists: SyStat
lists: WEBLOGO
lists: UCSF Chimera
lists: TreeView
lists: pheatmap
lists: WinWCP
lists: microRNA.org
lists: glmnet
lists: Phenix.refine
lists: BASE
lists: beadarray
lists: RMS
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has parent organization: University of Texas at Austin; Texas; USA
Sloan Foundation DOI:10.1002/asi.24454 Free, Available for download, Freely available https://github.com/softcite/softcite_dataset_v2, https://zenodo.org/record/7995565 SCR_024411 Software Citation 2026-08-21 12:42:54 0

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