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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Stanford University; Stanford; California Resource Report Resource Website 50+ mentions |
Stanford University; Stanford; California (RRID:SCR_011538) | university | Private, non profit university in Stanford, California, USA for research and undergraduate and graduate studies. Known for its academic strength, wealth, proximity to Silicon Valley, and ranking as one of the world's top universities. Particularly noted for its entrepreneurship and is one of the most successful universities in attracting funding for start-ups. | private, university, institution, undergraduate, program, resource, graduate |
uses: ShareLaTeX uses: ReadCube uses: Scizzle uses: Sparrho uses: GenomeCompiler uses: LabArchives is affiliated with: Integrative Human Microbiome Project is affiliated with: Diabetes Epigenome Atlas is related to: Stanford Research Institute International is related to: Alzheimers Disease Genetics Consortium is related to: Beta Cell Biology Consortium is related to: Clinical and Translational Science Awards Consortium is related to: ShareLaTeX is related to: LabArchives is related to: Diabetic Foot Consortium is related to: GENSCAN is related to: Center for Expanded Data Annotation and Retrieval is parent organization of: MAXCHELATOR is parent organization of: Sea Urchin Embryology is parent organization of: SNPiR is parent organization of: GERP is parent organization of: Wnt homepage is parent organization of: Biozon is parent organization of: VectorDB- Molecular Biology Vector Sequence Database is parent organization of: HighWire Press is parent organization of: BFCounter is parent organization of: Clarity resources is parent organization of: PoissonSeq is parent organization of: Flybrain at Stanford is parent organization of: Stanford Genomics Service Center Core Facility is parent organization of: STRUCTURE is parent organization of: RVD is parent organization of: OpenSim is parent organization of: PharmGKB is parent organization of: JETTA is parent organization of: Phoenix is parent organization of: WEBMAXC STANDARD is parent organization of: Ontology Development and Information Extraction is parent organization of: Stanford Translational Research Integrated Database Environment and Clinical Data Warehouse is parent organization of: Phenotree is parent organization of: Quantitative Enrichment of Sequence Tags is parent organization of: WholeCellKB is parent organization of: Simbios is parent organization of: Neurogrid is parent organization of: T-lex is parent organization of: HighWire is parent organization of: Tissue Microarray Database is parent organization of: Stanford TMA Software is parent organization of: TMA-Combiner is parent organization of: Stanford Center for Biomedical Informatics Research is parent organization of: amide is parent organization of: Wnt Database is parent organization of: OligoGenome is parent organization of: HyBrow (Hypothesis Browser) is parent organization of: DataWrangler is parent organization of: BenchWise is parent organization of: Neurobiological Image Management System is parent organization of: Target genes of Wnt/beta-catenin signaling is parent organization of: HPMR - Human Plasma Membrane Receptome is parent organization of: LPFC: A Library of Protein Family Cores is parent organization of: YDPM - Yeast Deletion Project is parent organization of: SimTKCore is parent organization of: Postdoctoral Program for Veterinarians is parent organization of: Alizadehlab: MeeboChip and HeeboChip Open Source Project is parent organization of: Q-Value Software is parent organization of: LAGAN is parent organization of: xjView: A Viewing Program For SPM is parent organization of: Exon Array Browser is parent organization of: Coursera is parent organization of: iPOP is parent organization of: SSRL Structural Molecular Biology is parent organization of: SpliceMap is parent organization of: MAPP is parent organization of: SAM is parent organization of: Stanford University School of Medicine; California; USA is parent organization of: ProbCons is parent organization of: Genovo is parent organization of: American Parkinson's Disease Association Information and Referral Center is parent organization of: Sequencing of Candida Albicans is parent organization of: Jambalaya is parent organization of: Simbiome is parent organization of: SciTran is parent organization of: Brain RNA-Seq is parent organization of: CytoSPADE is parent organization of: BioPortal is parent organization of: Research Network in Early Experience and Brain Development is parent organization of: STOP is parent organization of: NCBO Annotator is parent organization of: PubSearch is parent organization of: EM3D is parent organization of: Joint Center for Structural Genomics is parent organization of: ToRNADo is parent organization of: SGD is parent organization of: Stanford CNI is parent organization of: Stanford CoreNLP is parent organization of: GenomeSpace is parent organization of: Encode is parent organization of: OpenNeuro is parent organization of: Poldracklab Portal is parent organization of: Diabetes Epigenome Atlas is parent organization of: MrDiffusion is parent organization of: Stanford Center for Reproducible Neuroscience is parent organization of: Stanford Diabetes Research Center Diabetes Genomics Analysis Core is parent organization of: Biostrings is parent organization of: CIBERSORT is parent organization of: Shannon is parent organization of: VORTEX is parent organization of: Optogenetics Resource Center is parent organization of: Brain RNA-Seq is parent organization of: LeafCutter is parent organization of: Stanford University Vincent Coates Foundation Mass Spectrometry Laboratory Core Facility is parent organization of: Stanford University Human Immune Monitoring Center Core Facility is parent organization of: Preseq is parent organization of: CRISPR-ERA is parent organization of: WEBMAXC EXTENDED is parent organization of: Stanford Graduate School of Business Data, Analytics, and Research Computing Core Facility is parent organization of: Stanford University Community of Shared Advanced Research Platforms is parent organization of: Stanford Sarafan Chemistry, Engineering and Medicine for Human Health Knowledge Centers Core Facility is parent organization of: Stanford Sarafan Protein Engineering Knowledge Center Core Facility is parent organization of: Stanford Sarafan Metabolomics Knowledge Center Core Facility is parent organization of: Stanford Nanofabrication Core Facility is parent organization of: Stanford Sarafan Macromolecular Structure Knowledge Center Core Facility is parent organization of: Stanford Sarafan Medicinal Chemistry Knowledge Center Core Facility is parent organization of: Stanford Graduate School of Business Behavioral Lab Core Facility is parent organization of: Stanford Nano Shared Core Facility is parent organization of: Stanford System Prototyping Core Facility is parent organization of: Stanford Graduate School of Business Library is parent organization of: Stanford Vincent V.C. Woo Sandbox Laboratory Core Facility is parent organization of: Stanford Behavioral and Functional Neuroscience Laboratory Core Facility is parent organization of: Stanford Neuroscience Gene Vector and Virus Core Facility is parent organization of: Stanford Visualization Laboratory Core Facility is parent organization of: Stanford Geochronology Cluster Core Facility is parent organization of: Stanford Stable Isotope Biogeochemistry Laboratory Core Facility is parent organization of: Stanford Neuroscience Preclinical Imaging Laboratory Core Facility is parent organization of: Stanford Environmental Measurements Core Facility is parent organization of: Stanford Microchemical Analysis Core Facility is parent organization of: Stanford Neuroscience Microscopy Service Core Facility is parent organization of: Stanford Doerr School of Sustainability Sample Preparation Laboratory Core Facility is parent organization of: Stanford SIGMA Shared Facility is parent organization of: Stanford School of Medicine Translational Applications Service Center Core Facility is parent organization of: Stanford University School of Medicine Beckman Center for Molecular and Genetic Medicine Core Facility is parent organization of: Stanford University Chemistry Department NMR Facility is parent organization of: Stanford University School of Medicine Biobank Core Facility is parent organization of: Stanford University School of Medicine Center for Innovation in In vivo Imaging Core Facility is parent organization of: Stanford University School of Medicine Richard M. Lucas Center for Imaging Core Facility is parent organization of: Stanford University School of Medicine PET/MRI Metabolic Service Center Core Facility is parent organization of: Stanford University School of Medicine In Vitro Biosafety Level3 Service Center Core Facility is parent organization of: Stanford University School of Medicine Human Pathology Histology Services Laboratory Core Facility is parent organization of: Stanford University School of Medicine Genetics Bioinformatics Service Center Core Facility is parent organization of: Stanford Canary Center Preclinical Imaging Core Facility is parent organization of: Stanford University School of Medicine Transgenic, Knockout and Tumor model Center Core Facility is parent organization of: Stanford University School of Medicine Veterinary Service Center Core Facility is parent organization of: Stanford University School of Medicine Cancer Institute Tissue Procurement Shared Resource Core Facility is parent organization of: Stanford University School of Medicine Clinical and Translational Research Unit Core Facility is parent organization of: Stanford University School of Medicine Institute for Stem Cell Biology and Regenerative Medicine FACS Core Facility is parent organization of: Stanford University School of Medicine Animal Diagnostic Laboratory Core Facility is parent organization of: Stanford University Computer Science Department Computer Core Facility is parent organization of: Stanford University Instrumentation Shop Core Facility is parent organization of: Stanford University Cyclotron and Radiochemistry Core Facility is parent organization of: Stanford University Biomaterials and Advanced Drug Delivery Laboratory Core Facility is parent organization of: Stanford University Chemistry Department Optics Core Facility is parent organization of: Stanford University School of Medicine Computational Services and Bioinformatics Core Facility is parent organization of: Stanford University School of Medicine Laboratory for Cell and Gene Medicine Core Facility is parent organization of: Stanford University Research Computing is parent organization of: Stanford University Physics Machine Shop Core Facility is parent organization of: Stanford University High Performance Computing Center Core Facility is parent organization of: Stanford Center for High Throughput Quantitative Biology Core Facility is parent organization of: Stanford University Quantitative Sciences Unit Core Facility is parent organization of: Stanford University School of Medicine Cancer Institute Biostatistics Shared Resource Core Facility is parent organization of: Stanford Spectrum Biostatistics Epidemiology and Research Design Core Facility is parent organization of: STRUCTURE is parent organization of: Stanford University Additive Manufacturing and Printing Core Facility is parent organization of: Stanford University Koret Human Neurosciences Community Laboratory Core Facility is parent organization of: Stanford University Microfluidics Foundry Core Facility is parent organization of: Stanford University School of Medicine Protein and Nucleic Acid Core Facility is parent organization of: WebProtege is parent organization of: Stanford Cryo-Electron Microscopy Center Core Facility is parent organization of: Stanford Geomicrobiology Shared Laboratories Core Facility is parent organization of: Stanford University Cosmogenic Isotope Lab Core Facility is parent organization of: Stanford Research Computing Core Facility is parent organization of: Stanford University Mineralogy and Petrology Lab Core Facility is parent organization of: Stanford University MicroCT Core Facility is parent organization of: Stanford Ecosystems Shared Laboratory Core Facility is parent organization of: DADA2 is parent organization of: OpenMM is parent organization of: Stanford CVI Biobank has organization facet: MARIA |
nlx_44253, grid.168010.e, Wikidata:Q41506, Crossref funder ID:100005492, ISNI:419368956 | https://ror.org/00f54p054 | SCR_011538 | 2026-08-15 11:24:17 | 70 | |||||||||
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Stanford Research Institute International Resource Report Resource Website 1+ mentions |
Stanford Research Institute International (RRID:SCR_004926) | SRI | institution | Independent, nonprofit research institute conducting client sponsored research and development for government agencies, commercial businesses, foundations, and other organizations. SRI also brings its innovations to the marketplace by licensing its intellectual property and creating new ventures. SRI was founded as Stanford Research Institute in 1946 by a group of West Coast industrialists and Stanford University. SRI formally separated from the University in 1970, and we changed our name to SRI International in 1977. |
is related to: Stanford University; Stanford; California is parent organization of: BioCyc is parent organization of: NIMH Toxicological Screens of Novel Ligands is parent organization of: Project Halo is parent organization of: EcoCyc is parent organization of: NCANDA: Data Integration Component is parent organization of: SRI24 Atlas: Normal Adult Brain Anatomy is parent organization of: HumanCyc: Encyclopedia of Homo sapiens Genes and Metabolism is parent organization of: MetaCyc |
nif-0000-00235 | SCR_004926 | SRI International, Stanford Research Institute | 2026-08-15 11:22:55 | 3 | |||||||||
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Beta Cell Biology Consortium Resource Report Resource Website 50+ mentions |
Beta Cell Biology Consortium (RRID:SCR_005136) | BCBC | biomaterial supply resource, cell repository, material resource | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone., documented on August 1, 2015. Consortium that aims to facilitate interdisciplinary collaborations to advance the understanding of pancreatic islet development and function, with the goal of developing innovative therapies to correct the loss of beta cell mass in diabetes, including cell reprogramming, regeneration and replacement. They are responsible for collaboratively generating the necessary reagents, mouse strains, antibodies, assays, protocols, technologies and validation assays that are beyond the scope of any single research effort. The scientific goals for the BCBC are to: * Use cues from pancreatic development to directly differentiate pancreatic beta cells and islets from stem / progenitor cells for use in cell-replacement therapies for diabetes, * Determine how to stimulate beta cell regeneration in the adult pancreas as a basis for improving beta cell mass in diabetic patients, * Determine how to reprogram progenitor / adult cells into pancreatic beta-cells both in-vitro and in-vivo as a mean for developing cell-replacement therapies for diabetes, and * Investigate the progression of human type-1 diabetes using patient-derived cells and tissues transplanted in humanized mouse models. Many of the BCBC investigator-initiated projects involve reagent-generating activities that will benefit the larger scientific community. The combination of programs and activities should accelerate the pace of major new discoveries and progress within the field of beta cell biology. | RIN, Resource Information Network, pancreatic islet, mouse, beta cell, pancreas, pancreatic development, embryonic stem cell, cell line, genomics, antibody, adenovirus, functional genomics, mouse embryonic stem cell line, mouse strain, protocol, embryonic stem cell line, data sharing, data set, gene expression, gene, pancreatic islet development, pancreatic islet function, basic science, basic research, cell reprogramming, cell regeneration, cell replacement, RRID Community Authority |
is used by: NIF Data Federation is used by: Integrated Animals is used by: NIDDK Information Network (dkNET) is listed by: One Mind Biospecimen Bank Listing is listed by: re3data.org is listed by: Consortia-pedia is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources is listed by: Resource Information Network is related to: dkCOIN is related to: Karolinska Institute; Stockholm; Sweden is related to: University of California at Los Angeles; California; USA is related to: Stanford University; Stanford; California is related to: University of Massachusetts Medical School; Massachusetts; USA is related to: Hebrew University Hadassah Medical School; Jerusalem; Israel is related to: Philipps-University Marburg; Marburg; Germany is related to: Imperial College London; London; United Kingdom is related to: Childrens Hospital of Philadelphia - Research Institute; Pennsylvania; USA is related to: Icahn School of Medicine at Mount Sinai; New York; USA is related to: University of California at San Francisco; California; USA is related to: Massachusetts Institute of Technology; Massachusetts; USA; is related to: Hadassah Medical Center; Jerusalem; Israel is related to: DanStem is related to: Oregon Health and Science University; Oregon; USA is related to: Vanderbilt University; Tennessee; USA is related to: University of Chicago; Illinois; USA is related to: University of Massachusetts; Massachusetts; USA is related to: University of Colorado Boulder; Colorado; USA is related to: Vrije Universiteit Brussel; Brussels; Belgium is related to: University of Geneva; Geneva; Switzerland is related to: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA is related to: McEwen Centre for Regenerative Medicine is related to: Seattle Childrens Research Institute; Washington; USA is related to: Columbia University; New York; USA is related to: University of Texas Southwestern Medical Center; Texas; USA is related to: Hagedorn Research Institute; Gentofte; Denmark is related to: Howard Hughes Medical Institute is related to: Northwestern University; Illinois; USA is related to: CAMRD is related to: French National Center for Scientific Research is related to: University of California at San Diego; California; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Copenhagen; Copenhagen; Denmark is related to: Jackson Laboratory is related to: Max Planck Institute for Heart and Lung Research; Bad Nauheim; Germany is related to: Indiana University; Indiana; USA is related to: University of Toronto; Ontario; Canada is related to: Harvard University; Cambridge; United States is related to: Harvard Medical School; Massachusetts; USA is related to: Integrated Manually Extracted Annotation has parent organization: Vanderbilt University; Tennessee; USA is parent organization of: Beta Cell Genomics Ontology |
Type 1 diabetes, Diabetes | NIDDK DK-01-014; NIDDK DK-01-17; NIDDK DK-01-18; NIDDK DK-09-011 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144143 | SCR_005136 | 2026-08-20 09:26:45 | 60 | ||||||
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Center for Expanded Data Annotation and Retrieval Resource Report Resource Website 1+ mentions |
Center for Expanded Data Annotation and Retrieval (RRID:SCR_016269) | CEDAR | controlled vocabulary, data or information resource, ontology, organization portal, portal | Develops information technologies that make authoring complete metadata more manageable. Its products aim to facilitate using the metadata in further research.Center to improve metadata and its use throughout biomedical sciences. Develops information technologies that make authoring complete metadata more manageable through better interfaces, terminology, metadata practices, and analytics. Optimizes metadata pathway from provider to end user. Provides way for funders to specify what metadata they want to collect as part of research life cycle. | Metadata, interface, metadata practice, analytics, metadata pathway, funded research, data repository, data collection, |
is related to: Stanford University; Stanford; California is related to: Yale University; Connecticut; USA is related to: University of Oxford; Oxford; United Kingdom has parent organization: Stanford Center for Biomedical Informatics Research is parent organization of: CEDAR Workbench |
NIAID U54 AI117925 | SCR_018150 | https://more.metadatacenter.org/ | SCR_016269 | 2026-08-21 12:40:42 | 4 | |||||||
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Diabetic Foot Consortium Resource Report Resource Website |
Diabetic Foot Consortium (RRID:SCR_018914) | DFC | consortium, data or information resource, disease-related portal, organization portal, portal, topical portal | Group of academic institutions committed to studying diabetic foot conditions, such as foot ulcers and wound healing, to develop predictive biomarkers which can be later used to create better treatment plans and improve health and quality of life for people living with diabetes. | Academic institution group, diabetic, diabetic foot, diabetic foot condition, foot ulcer, wound healing, biomarker |
is related to: Indiana University; Indiana; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Miami; Florida; USA is related to: University of California at San Francisco; California; USA is related to: Stanford University; Stanford; California is related to: University of Michigan; Ann Arbor; USA |
diabetic | NIDDK | SCR_018914 | 2026-08-21 12:41:52 | 0 | ||||||||
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Clinical and Translational Science Awards Consortium Resource Report Resource Website 1+ mentions |
Clinical and Translational Science Awards Consortium (RRID:SCR_008339) | CTSA | knowledge environment | National consortium of medical research institutions working together to transform the local, regional, and national environment to increase the efficiency and speed of clinical and translational research across the country. Consortium members share a common vision to reduce the time it takes for laboratory discoveries to become treatments for patients, to engage communities in clinical research efforts and to train clinical and translational researchers. This consortium includes 60 medical research institutions located throughout the nation, linking them together to energize the discipline of clinical and translational science. The CTSA consortium has five Strategic Goals: * National Clinical and Translational Research Capability * The Training and Career Development of Clinical and Translational Scientists * Consortium-Wide Collaborations * The Health of our Communities and the Nation * T1 Translational Research | biomedical, clinical, community, consortium, institution, laboratory, medical, patient, research, researcher, science, translational, translational research, treatment |
is related to: REDCap is related to: eBIRT is related to: VIVO is related to: CTSA ShareCenter is related to: CUSP is related to: CDART is related to: cTAKES is related to: CTSA-IP is related to: FURTHeR is related to: HUBzero is related to: ePRISM is related to: ResearchMatch is related to: SPARC Request is related to: Albert Einstein College of Medicine; New York; USA is related to: Clinical Research Resource HUB is related to: Eagle I is related to: CTSAconnect is related to: Boston University; Massachusetts; USA is related to: Case Western Reserve University; Ohio; USA is related to: Columbia University; New York; USA is related to: Duke University; North Carolina; USA is related to: Emory University; Georgia; USA is related to: Morehouse School of Medicine; Georgia; USA is related to: Georgia Institute of Technology; Georgia; USA is related to: Georgetown University; Washington D.C.; USA is related to: Howard University; Washington D.C. is related to: Indiana University School of Medicine; Indiana; USA is related to: Johns Hopkins University; Maryland; USA is related to: Mayo Clinic is related to: Medical College of Wisconsin; Wisconsin; USA is related to: Medical University of South Carolina; South Carolina; USA is related to: Icahn School of Medicine at Mount Sinai; New York; USA is related to: New York University School of Medicine; New York; USA is related to: Northwestern University; Illinois; USA is related to: Oregon Health and Science University; Oregon; USA is related to: Penn State Milton S. Hershey Medical Center; Pennsylvania; USA is related to: Stanford University; Stanford; California is related to: Ohio State University; Ohio; USA is related to: Rockefeller University; New York; USA is related to: Scripps Research Institute is related to: University of Alabama at Birmingham; Alabama; USA is related to: University of North Carolina at Chapel Hill; North Carolina; USA is related to: University of Texas Health Science Center at San Antonio; Texas; USA is related to: University of Utah; Utah; USA is related to: Tufts University; Massachusetts; USA is related to: University of Arkansas for Medical Sciences; Arkansas; USA is related to: University of California at Los Angeles; California; USA is related to: University of California at Davis; California; USA is related to: University of California at Irvine; California; USA is related to: University of California at San Diego; California; USA is related to: University of California at San Francisco; California; USA is related to: University of Chicago; Illinois; USA is related to: University of Cincinnati; Ohio; USA is related to: University of Colorado Denver; Colorado; USA is related to: University of Florida; Florida; USA is related to: University of Illinois at Chicago; Illinois; USA is related to: University of Iowa; Iowa; USA is related to: University of Kansas Medical Center; Kansas; USA is related to: University of Massachusetts Medical School; Massachusetts; USA is related to: University of Miami; Florida; USA is related to: University of Michigan; Ann Arbor; USA is related to: University of Minnesota Twin Cities; Minnesota; USA is related to: University of New Mexico; New Mexico; USA is related to: University of Pennsylvania; Philadelphia; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Rochester School of Medicine and Dentistry; New York; USA is related to: University of Southern California; Los Angeles; USA is related to: University of Texas Health Science Center at Houston; Texas; USA is related to: University of Texas Medical Branch at Galveston is related to: University of Texas Southwestern Medical Center; Texas; USA is related to: University of Washington; Seattle; USA is related to: University of Wisconsin-Madison; Wisconsin; USA is related to: Vanderbilt University; Tennessee; USA is related to: Meharry Medical College is related to: Virginia Commonwealth University; Virginia; USA is related to: Washington University in St. Louis; Missouri; USA is related to: Weill Cornell Medical College; New York; USA is related to: Hunter College; New York; USA is related to: Yale University; Connecticut; USA has parent organization: Vanderbilt University; Tennessee; USA has parent organization: U.S. Department of Health and Human Services |
National Center for Advancing Translational Sciences 2U54TR000123 | nif-0000-24968 | http://www.ctsaweb.org/ | SCR_008339 | Clinical & Translational Science Awards, Clinical and Translational Science Awards | 2026-08-15 11:23:37 | 6 | ||||||
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GENSCAN Resource Report Resource Website 500+ mentions |
GENSCAN (RRID:SCR_013362) | genscan | analysis service resource, data analysis service, production service resource, service resource | Web server for identification of complete gene structures in genomic DNA.Tool for predicting locations and exon-intron structures of genes in genomic sequences from variety of organisms. Used for prediction of complete gene structures in human genomic DNA. | complete gene structures identyfication, genomic DNA, predicting locations, exon-intron structures, genomic sequences, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: Stanford University; Stanford; California has parent organization: Massachusetts Institute of Technology; Massachusetts; USA; |
PMID:9149143 | Restricted | biotools:genscan, OMICS_01494 | https://bio.tools/genscan | SCR_013362 | GENSCAN Web Server at MIT | 2026-08-20 09:29:07 | 772 | |||||
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ShareLaTeX Resource Report Resource Website 1+ mentions |
ShareLaTeX (RRID:SCR_002652) | ShareLaTeX | authoring tool, software application, software resource | An collaborative tool which allows users to edit LaTeX documents in their browser. Multiple users can simultaneously access and edit the same LaTeX document and see the changes in real time. The latest version is available online, and the built in chat helps communicate with others while editing. | collaboration tool, authoring, LaTex |
is used by: University of Toronto; Ontario; Canada is used by: Stanford University; Stanford; California is used by: Harvard University; Cambridge; United States is used by: University of Tokyo; Tokyo; Japan is used by: University of Liverpool; Liverpool; United Kingdom is used by: University of Cambridge; Cambridge; United Kingdom is used by: Imperial College London; London; United Kingdom is used by: Yale University; Connecticut; USA is used by: University of Oxford; Oxford; United Kingdom is used by: Massachusetts Institute of Technology; Massachusetts; USA; is listed by: FORCE11 is related to: FORCE11 is related to: University of Toronto; Ontario; Canada is related to: Stanford University; Stanford; California is related to: Harvard University; Cambridge; United States is related to: University of Tokyo; Tokyo; Japan is related to: University of Liverpool; Liverpool; United Kingdom is related to: University of Cambridge; Cambridge; United Kingdom is related to: Imperial College London; London; United Kingdom is related to: Yale University; Connecticut; USA is related to: University of Oxford; Oxford; United Kingdom is related to: Massachusetts Institute of Technology; Massachusetts; USA; |
Free, Available for download, Freely available | nlx_156080 | SCR_002652 | 2026-08-21 12:36:46 | 1 | ||||||||
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Alzheimers Disease Genetics Consortium Resource Report Resource Website 10+ mentions |
Alzheimers Disease Genetics Consortium (RRID:SCR_004004) | ADGC | consortium, data or information resource, data set, organization portal, portal | Consortium to conduct genome-wide association studies (GWAS) to identify genes associated with an increased risk of developing late-onset Alzheimer''''s disease (LOAD). The goal of the ADGC is to identify genetic variants associated with risk for AD. It plans to do this through the following collaborative goals: # Identify genes responsible for AD susceptibility # Identify AD sub-phenotype genes rate-of-progression plaque / tangle load / distribution biomarker variability # Generate a genetic data resource for the AD research community Data generated by ADGC is available at the following website: https://www.niagads.org/content/alzheimers-disease-genetics-consortium-adgc-collection | genome-wide association study, gene, biomarker, basic science, genetic variant, genetics, african-american, caucasian |
is listed by: Consortia-pedia is related to: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA is related to: Icahn School of Medicine at Mount Sinai; New York; USA is related to: University of Washington; Seattle; USA is related to: Boston University; Massachusetts; USA is related to: Washington University in St. Louis; Missouri; USA is related to: Vanderbilt University; Tennessee; USA is related to: Oregon Health and Science University; Oregon; USA is related to: Columbia University; New York; USA is related to: University of Miami; Florida; USA is related to: Banner Alzheimer's Institute; Arizona; USA is related to: Indiana University; Indiana; USA is related to: University of Toronto; Ontario; Canada is related to: Mayo Clinic Florida; Florida; USA is related to: Johns Hopkins University; Maryland; USA is related to: Albert Einstein College of Medicine; New York; USA is related to: Genentech is related to: University of Gothenburg; Gothenburg; Sweden is related to: University of North Texas; Texas; USA is related to: University of Kentucky; Kentucky; USA is related to: University of Chicago; Illinois; USA is related to: University of Michigan; Ann Arbor; USA is related to: University of Virginia; Virginia; USA is related to: Florida Alzheimer's Disease Research Center is related to: Mayo Clinic is related to: Emory University; Georgia; USA is related to: New York University; New York; USA is related to: Stanford University; Stanford; California is related to: Northwestern University Feinberg School of Medicine; Illinois; USA is related to: University of Alabama; Alabama; USA is related to: University of Arkansas for Medical Sciences; Arkansas; USA is related to: University of San Diego; California; USA is related to: University of California at Irvine; California; USA is related to: University of California at Los Angeles; California; USA is related to: University of California at San Diego; California; USA is related to: University of California at San Francisco; California; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Southern California; Los Angeles; USA is related to: University of Texas Southwestern Medical Center; Texas; USA is related to: National Alzheimer's Coordinating Center is related to: Childrens Hospital of Philadelphia - Research Institute; Pennsylvania; USA is related to: National Institute on Aging is related to: University of California at Davis; California; USA is related to: Mayo Clinic College of Medicine is related to: Wake Forest University; North Carolina; USA is related to: National Cell Repository for Alzheimer's Disease is related to: International Genomics of Alzheimers Project is related to: National Alzheimer's Coordinating Center has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA |
NIA UO1AG032984 | nlx_158415 | SCR_004004 | Alzheimer''''s Disease Genetics Consortium (ADGC), Alzheimer''''s Disease Genetics Consortium | 2026-08-21 12:37:26 | 12 | |||||||
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LabArchives Resource Report Resource Website 50+ mentions |
LabArchives (RRID:SCR_013973) | electronic laboratory notebook, software application, software resource | An ELN (electronic lab notebook) software application where researchers can record and organize their data in lieu of a paper notebook. Users can store and edit texts, PDFs, spreadsheets, images, sample collections, and other types of data. LabArchives automatically backs up data and data can be accessed anywhere. Users can choose to use the professional edition of LabArhives, the classroom edition, or to purchase an enterprise license. | ELN, electronic laboratory notebook, software application, data management, lab management, professional, classroom, enterprise |
is used by: University of Sydney; Sydney; Australia is used by: Monash University; Melbourne; Australia is used by: University of Wisconsin-Madison; Wisconsin; USA is used by: Tufts University; Massachusetts; USA is used by: Northwestern University; Illinois; USA is used by: Emory University; Georgia; USA is used by: Stanford University; Stanford; California is used by: University of Oxford; Oxford; United Kingdom is listed by: Connected Researchers is related to: Connected Researchers is related to: University of Sydney; Sydney; Australia is related to: Monash University; Melbourne; Australia is related to: University of Wisconsin-Madison; Wisconsin; USA is related to: Tufts University; Massachusetts; USA is related to: Northwestern University; Illinois; USA is related to: Emory University; Georgia; USA is related to: Stanford University; Stanford; California is related to: University of Oxford; Oxford; United Kingdom |
Available to the research and education community | SCR_013973 | 2026-08-21 12:40:14 | 64 | ||||||||||
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GERP Resource Report Resource Website 50+ mentions |
GERP (RRID:SCR_000563) | GERP | software resource | Software that identifies constrained elements in multiple alignments by quantifying substitution deficits. These deficits represent substitutions that would have occurred if the element were neutral DNA, but did not occur because the element has been under functional constraint. We refer to these deficits as Rejected Substitutions. Rejected substitutions are a natural measure of constraint that reflects the strength of past purifying selection on the element. GERP estimates constraint for each alignment column; elements are identified as excess aggregations of constrained columns. A false-positive rate (which is user-settable) is calculated using "shuffled" alignments in which the order of columns is randomized., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | genomic, evolution, rate profiling |
is listed by: OMICtools is listed by: Debian has parent organization: Stanford University; Stanford; California |
PMID:15965027 PMID:21152010 |
THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00174 | https://sources.debian.org/src/gerp++/ | SCR_000563 | Genomic Evolutionary Rate Profiling, GERP++, Genomic Evolutionary Rate Profiling: GERP, GERP2 | 2026-08-15 11:21:54 | 54 | |||||
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Quantitative Enrichment of Sequence Tags Resource Report Resource Website 10+ mentions |
Quantitative Enrichment of Sequence Tags (RRID:SCR_004065) | QuEST | software resource | A Kernel Density Estimator-based package for analysis of massively parallel sequencing data from chromatin immunoprecipitation (ChIP-seq) experiments. | genome-wide, transcription factor binding site, chip-seq, transcription factor, binding site, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: Gene Ontology has parent organization: Stanford University; Stanford; California |
PMID:19160518 | OMICS_00458, biotools:quest | https://bio.tools/quest | SCR_004065 | Quantitative Enrichment of Sequence Tags: QuEST | 2026-08-15 11:22:49 | 49 | ||||||
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Neurogrid Resource Report Resource Website 10+ mentions |
Neurogrid (RRID:SCR_005024) | Neurogrid | instrument resource | A specialized hardware platform that will perform cortex-scale emulations while offering software-like flexibility. With sixteen 12x14 sq-mm chips (Neurocores) assembled on a 6.5x7.5 sq-in circuit board that can model a slab of cortex with up to 16x256x256 neurons - over a million! The chips are interconnected in a binary tree by 80M spike/sec links. An on-chip RAM (in each Neurocore) and an off-chip RAM (on a daughterboard, not shown) softwire vertical and horizontcal cortical connections, respectively. It provides an affordable option for brain simulations that uses analog computation to emulate ion-channel activity and uses digital communication to softwire synaptic connections. These technologies impose different constraints, because they operate in parallel and in serial, respectively. Analog computation constrains the number of distinct ion-channel populations that can be simulatedunlike digital computation, which simply takes longer to run bigger simulations. Digital communication constrains the number of synaptic connections that can be activated per secondunlike analog communication, which simply sums additional inputs onto the same wire. Working within these constraints, Neurogrid achieves its goal of simulating multiple cortical areas in real-time by making judicious choices. | simulation, neuron, cortex, synapse, analog vlsi, instrument, equipment, hardware | has parent organization: Stanford University; Stanford; California | NSF ; NIH |
PMID:17959490 | nlx_97879 | SCR_005024 | 2026-08-15 11:22:57 | 14 | |||||||
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T-lex Resource Report Resource Website 1+ mentions |
T-lex (RRID:SCR_005134) | T-lex | software resource | Software package for fast and accurate discovery, annotation, re-annotation and population analysis of Transposable Elements using Next-Generation Sequencing data. | transposable element, next-generation sequencing, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Stanford University; Stanford; California has parent organization: SourceForge |
GNU General Public License | biotools:t-lex2, OMICS_00121 | https://bio.tools/t-lex2 | SCR_005134 | T-lex package | 2026-08-15 11:23:08 | 4 | ||||||
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Genovo Resource Report Resource Website 100+ mentions |
Genovo (RRID:SCR_011911) | Genovo | software resource | Software for a novel de novo sequence assembler that discovers likely sequence reconstructions under the model. |
is listed by: OMICtools has parent organization: Stanford University; Stanford; California |
OMICS_01422 | SCR_011911 | Genovo - Metagenomic de novo Sequencing | 2026-08-15 11:24:37 | 227 | |||||||||
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MAPP Resource Report Resource Website 50+ mentions |
MAPP (RRID:SCR_010775) | MAPP | software resource | Java program that predicts the impact of all possible amino acid substitutions on the function of the protein., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. |
is listed by: OMICtools has parent organization: Stanford University; Stanford; California |
NHGRI | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00132 | SCR_010775 | Multivariate Analysis of Protein Polymorphism, Multivariate Analysis of Protein Polymorphism:MAPP | 2026-08-15 11:23:59 | 61 | |||||||
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ReadCube Resource Report Resource Website 1+ mentions |
ReadCube (RRID:SCR_013777) | software resource | A software resource application which organizes research literature. Users can import PDF articles into the application and create a searchable library. ReadCube enables users to perform keyword searches and provides references as well as note-taking tools. ReadCube also recommends articles to users based on library contents. For publishers, ReadCube enables interactive PDF versions of articles with tools for readers to make notes or perform author and keyword searches. | software resource, PDF, research, articles |
uses: Citation Style Language is used by: Brown University; Rhode Island; USA is used by: Cornell University; New York; USA is used by: Harvard University; Cambridge; United States is used by: Karolinska Institute; Stockholm; Sweden is used by: Imperial College London; London; United Kingdom is used by: King's College London; London; United Kingdom is used by: McGill University; Montreal; Canada is used by: Massachusetts Institute of Technology; Massachusetts; USA; is used by: Northwestern University; Illinois; USA is used by: University College London; London; United Kingdom is used by: Stanford University; Stanford; California is used by: University of North Carolina at Chapel Hill; North Carolina; USA is used by: RIKEN is used by: University of Cambridge; Cambridge; United Kingdom is used by: National Institutes of Health is used by: University of Oxford; Oxford; United Kingdom is used by: Max-Planck-Gesellschaft is used by: Zhejiang University; Zhejiang; China is used by: University of Washington; Seattle; USA is used by: Yale University; Connecticut; USA is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013777 | 2026-08-15 11:24:59 | 1 | ||||||||||
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Sparrho Resource Report Resource Website 1+ mentions |
Sparrho (RRID:SCR_013782) | software resource | A web application which organizes and recommends new scientific literature to users' news feeds based on keyword searches and user preferences. The site contains materials such as articles, posters, patents, grants, videos, and events. | web application, new literature, articles |
is used by: University of Cambridge; Cambridge; United Kingdom is used by: Stanford University; Stanford; California is used by: ETH Zurich; Zurich; Switzerland is used by: University of Oxford; Oxford; United Kingdom is used by: Imperial College London; London; United Kingdom is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013782 | 2026-08-15 11:25:00 | 1 | ||||||||||
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Scizzle Resource Report Resource Website |
Scizzle (RRID:SCR_013781) | software resource | A web application which finds new and relevant scientific literature based on keyword searches and filters. Users can also share, organize, and collaborate on papers using tools within Scizzle. | web application, new literature, relevant literature, articles |
is used by: University of Cambridge; Cambridge; United Kingdom is used by: Harvard Medical School; Massachusetts; USA is used by: Massachusetts Institute of Technology; Massachusetts; USA; is used by: Yale University; Connecticut; USA is used by: Stanford University; Stanford; California is used by: Cornell University; New York; USA is used by: Columbia University; New York; USA is used by: Rockefeller University; New York; USA is used by: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA is used by: Emory University; Georgia; USA is used by: National Institutes of Health is used by: University of Barcelona; Barcelona; Spain is used by: Georgia Institute of Technology; Georgia; USA is used by: Karolinska Institute; Stockholm; Sweden is used by: McGill University; Montreal; Canada is used by: Icahn School of Medicine at Mount Sinai; New York; USA is used by: University College London; London; United Kingdom is used by: University of Washington; Seattle; USA is used by: Washington University in St. Louis; Missouri; USA is listed by: Connected Researchers is related to: Connected Researchers |
Free, Public | SCR_013781 | 2026-08-15 11:24:59 | 0 | ||||||||||
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RVD Resource Report Resource Website 1+ mentions |
RVD (RRID:SCR_002635) | algorithm resource, software resource | Algorithm for single nucleotide variant detection using next-generation resequencing. It estimates the error rate at each base position in the reference sequence utilizing a command-line user interface through MATLAB. | single nucleotide detection, next gen sequencing, detection algorithm |
is listed by: OMICtools has parent organization: Stanford University; Stanford; California |
Free, Available for download, Freely available | OMICS_00073 | SCR_002635 | 2026-08-18 09:40:53 | 3 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
