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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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OCICB Resource Report Resource Website |
OCICB (RRID:SCR_016597) | OCICB | data or information resource, organization portal, portal | Office of Cyber Infrastructure and Computational Biology of NIAID. | office, cyber, infrastructure, computational, biology, NIAID |
has parent organization: NIAID is parent organization of: Nephele |
NIH | SCR_016597 | SciCrunch Registry | Office of Cyber Infrastructure and Computational Biology | 2026-10-24 12:50:01 | 0 | ||||||||
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KOMP2 Resource Report Resource Website 1+ mentions |
KOMP2 (RRID:SCR_017528) | data or information resource, portal, project portal | Knockout Mouse Phenotyping Project, JAX information about their contributions to KOMP2 project. Project to generate and phenotype single gene KO mouse strains from KOMP ES cell lines. Strains are phenotyped using protocols in pipeline designed by International Mouse Phenotyping Consortium. There are three NIH-funded phenotyping centers in United States: JAX, BaSH Consortium (Baylor College of Medicine, the Wellcome Trust Sanger Institute and MRC Harwell), and the DTCC Consortium (University of California at Davis, the Toronto Center for Phenogenomics, Children’s Hospital Oakland Research Institute (CHORI) and Charles River ). | Generate, phenotype, single, gene, KO mouse, strain, KOMP ES cell line, IMPC, JAX |
is related to: International Mouse Phenotyping Consortium (IMPC) is related to: Knockout Mouse Project is related to: Knockout Mouse Project |
NIH | Free, Freely available | SCR_017528 | SciCrunch Registry | Knockout Mouse Phenotyping Project | 2026-10-24 12:50:02 | 2 | ||||||||
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Science of Behavior Change Research Network Resource Report Resource Website 1+ mentions |
Science of Behavior Change Research Network (RRID:SCR_017385) | SOBC | data or information resource, portal, project portal | Repository for behavioral science measures that have been validated or are in process of being validated in accordance with SOBC Experimental Medicine Approach. | Data, behavioral, science, SOBC, measure, data, medicine | NIH | SCR_017388 | https://scienceofbehaviorchange.org/measures/, https://scienceofbehaviorchange.org/measures/ | SCR_017385 | SciCrunch Registry | SOBC Measures Repository, Science of Behavior Change (SOBC) Research Network | 2026-10-24 12:50:02 | 1 | |||||||
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National Institutes of Health Stem Cell Tables Resource Report Resource Website |
National Institutes of Health Stem Cell Tables (RRID:SCR_008359) | NIH Stem Cells | data or information resource, data set | Data tables providing an overview of information about stem cells that have been derived from mice and humans. The tables summarize published research that characterizes cells that are capable of developing into cells of multiple germ layers (i.e., multipotent or pluripotent) or that can generate the differentiated cell types of another tissue (i.e., plasticity) such as a bone marrow cell becoming a neuronal cell. The tables do not include information about cells considered progenitor or precursor cells or those that can proliferate without the demonstrated ability to generate cell types of other tissues. The tables list the tissue from which the cells were derived, the types of cells that developed, the conditions under which differentiation occurred, the methods by which the cells were characterized, and the primary references for the information. | ectoderm, endoderm, adipocyte, astrocyte, bone marrow, brain, cardiac, chondrocyte, differentiation, germ layer, hematopoietic stem cell, human, liver, mesenchymal stem cell, mesoderm, mouse, muscle, neuron, neuronal, osteoblast, pancreas, plasticity, platelet, red blood cell, skeletal, skin, spinal cord, neural stem cell, tenocyte, tissue, white blood cell, stem cell, multipotent stem cell, pluripotent stem cell, embryonic stem cell, embryonic primordial germ cell, primordial germ cell, neural progenitor cell, mesenchymal progenitor cell | has parent organization: National Institutes of Health | NIH | nif-0000-25459 | http://stemcells.nih.gov/info/scireport/appendixD.asp | SCR_008359 | SciCrunch Registry | 2026-10-24 12:52:10 | 0 | |||||||
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Astrocyte Reactivity RNA-Seq Browser Resource Report Resource Website 1+ mentions |
Astrocyte Reactivity RNA-Seq Browser (RRID:SCR_015033) | data or information resource, database | Database containing information about RNA-sequencing and astrocyte reactivity. Searching a gene through this engine provides differential expression data for various experimental conditions. | astrocyte, glia, reactivity, rna-seq, search engine | has parent organization: University of California Los Angeles Department of Neurobiology | NIH NS057624; NIH NS084030; NIH P30 NS062691; NIH NS060677; NIH MH099559A; NIH MH104069; Dr. Miriam and Sheldon G. Adelson Medical Foundation ; Wings for Life |
PMID:27027288 | Public | SCR_015033 | SciCrunch Registry | 2026-10-24 12:51:12 | 3 | ||||||||
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Genetics of Kidneys in Diabetes Resource Report Resource Website |
Genetics of Kidneys in Diabetes (RRID:SCR_000133) | GoKinD, Go KinD | biomaterial supply resource, material resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Collect, store, and distribute genetic samples from cases and controls of type 1 diabetes and diabetic nephropathy for investigator-driven research into the genetic basis of diabetic nephropathy. As the risk of kidney complications in type 1 diabetes appears to have a considerable genetic component, this study assembled a large data resource for researchers attempting to identify causative genetic variants. The types of data collected allowed traditional case-control testing, a rapid and often powerful approach, and family-based analysis, a robust approach that is not influenced by population substructure. | clinical, genetics, genetic variant, gene, data set |
is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) has parent organization: George Washington University; Washington D.C.; USA |
Type 1 diabetes, Diabetes, Diabetic nephropathy, Kidney disease | JDRF ; NIH |
PMID:16775037 | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152764 | http://www.gokind.org/access | SCR_000133 | SciCrunch Registry | Genetics of Kidneys in Diabetes (GoKinD) Study, Genetics of Kidneys in Diabetes Study | 2026-10-24 12:51:16 | 0 | |||
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DISCO Resource Report Resource Website 100+ mentions |
DISCO (RRID:SCR_004586) | DISCO | service resource, software resource | DISCO is an information integration approach designed to facilitate interoperation among Internet resources. It consists of a set of tools and services that allows resource providers who maintain information to share it with automated systems such as NIF. NIF is then able to harvest the information and keep those sets of information up-to-date. How is this accomplished? By using a series of files and/or scripts which are then placed in the root directory of the resource developer''s resource. (NIF can also host the files on its servers and crawl for changes there.) Once the files of the resource providers are in place, and DISCO is notified, the DISCO server can then recognize and consume the information shared, providing machine understandable information to NIF Integrator Servers (also known as Aggregators) about your resource. What can DISCO do for my resource? * Inform search engines about your resource and keep your NIF Registry resource description up-to-date. * Expose your data (semi-structured datasets or fields within your structured database) through NIF''s Data Federation you choose what data will be shared. * Create links from an NCBI database (e.g., PubMed, Protein, Nucleotide, etc.) to your data records in NIF using Entrez LinkOut. * Advertise your terminology or ontological information. * Share your resource''s news with the NIF community., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | interoperation, sitemap, linkout, news, harvest, aggregate, FASEB list |
is used by: NIF Data Federation has parent organization: Neuroscience Information Framework has parent organization: Yale School of Medicine; Connecticut; USA |
NIH | PMID:20387131 PMID:18975149 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_143827 | SCR_004586 | SciCrunch Registry | registration and interoperation framework, DISCO: Extensible Web resource DISCOvery | 2026-10-24 12:51:26 | 332 | |||||
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WikiPathways Resource Report Resource Website 1000+ mentions |
WikiPathways (RRID:SCR_002134) | data or information resource, database, service resource | Open and collaborative platform dedicated to curation of biological pathways. Each pathway has dedicated wiki page, displaying current diagram, description, references, download options, version history, and component gene and protein lists. Database of biological pathways maintained by and for scientific community. | database, knowledge environment resource, image, web service, biological pathway, diagram description, reference, pathway, FASEB list |
is used by: NIF Data Federation is used by: Open PHACTS is related to: PharmGKB is related to: Reactome is related to: NetPath is related to: ConsensusPathDB is related to: NCBI BioSystems Database is related to: WebGestalt: WEB-based GEne SeT AnaLysis Toolkit has parent organization: University of California at San Francisco; California; USA has parent organization: Maastricht University; Maastricht; Netherlands |
Google Summer of Code program ; Netherlands Bioinformatics Centre ; NIGMS GM080223; NIGMS R01 GM100039; NIH ; NWO - Netherlands Organization for Scientific Research |
PMID:22096230 PMID:18651794 |
Free, Freely available | nif-0000-20925, r3d100013316 | SCR_002134 | SciCrunch Registry | Wiki Pathways | 2026-10-24 12:50:22 | 2013 | ||||||
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Mutation Annotation and Genomic Interpretation Resource Report Resource Website |
Mutation Annotation and Genomic Interpretation (RRID:SCR_002800) | MAGI | analysis service resource, data analysis service, production service resource, service resource | A tool for annotating, exploring, and analyzing gene sets that may be associated with cancer. | mutation, interaction, transcript, copy number aberration, network |
uses: The Cancer Genome Atlas uses: HINT uses: HPRD - Human Protein Reference Database uses: Pfam uses: SMART uses: Conserved Domain Database is listed by: OMICtools has parent organization: Brown University; Rhode Island; USA |
Cancer | NSF ; NIH ; Brown University; Rhode Island; USA |
Free, Freely available, Available for download | OMICS_06145 | SCR_002800 | SciCrunch Registry | MAGI - A tool for Mutation Annotation and Genomic Interpretation | 2026-10-24 12:50:25 | 0 | |||||
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UNC Infant 0-1-2 Atlases Resource Report Resource Website 1+ mentions |
UNC Infant 0-1-2 Atlases (RRID:SCR_002569) | UNC Infant 0-1-2 Atlases | atlas, data or information resource | 3 atlases dedicated for neonates, 1-year-olds, and 2-year-olds. Each atlas comprises a set of 3D images made up of the intensity model, tissue probability maps, and anatomical parcellation map. These atlases are constructed with the help of state-of-the-art infant MR segmentation and groupwise registration methods, on a set of longitudinal images acquired from 95 normal infants (56 males and 39 females) at neonate, 1-year-old, and 2-year-old. | analyze, atlas application, linux, macos, microsoft, magnetic resonance, posix/unix-like, infant, pediatric, template, longitudinal, neonate, male, female, mri |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: University of North Carolina at Chapel Hill School of Medicine; North Carolina; USA |
Normal | NIH ; NIBIB EB006733; NIBIB EB008760; NIBIB EB008374; NIBIB EB009634; NIMH MH088520; NIMH MH070890; NIMH MH064065; NINDS NS055754; NICHD HD053000 |
PMID:21533194 | Free, Available for download, Freely available | nlx_155971 | http://www.nitrc.org/projects/pediatricatlas | SCR_002569 | SciCrunch Registry | UNC 0-1-2 Infant Atlases | 2026-10-24 12:50:24 | 2 | |||
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Nucleic Acid Database Resource Report Resource Website 10+ mentions |
Nucleic Acid Database (RRID:SCR_003255) | NDB | data or information resource, database | A database of three-dimensional structural information about nucleic acids and their complexes. In addition to primary data, it contains derived geometric data, classifications of structures and motifs, standards for describing nucleic acid features, as well as tools and software for the analysis of nucleic acids. A variety of search capabilities are available, as are many different types of reports. NDB maintains the macromolecular Crystallographic Information File (mmCIF). | nucleic acid, dna, nucleopeptide, nucleoprotein, nucleotide, rna, transfection, sequence, structure, function, bio.tools, FASEB list |
is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: MINAS - Metal Ions in Nucleic AcidS is related to: Biological Magnetic Resonance Data Bank (BMRB) is related to: Jenalib: Jena Library of Biological Macromolecules has parent organization: Rutgers University; New Jersey; USA |
NSF ; DOE ; NIH |
PMID:24185695 PMID:1384741 |
Free, Available for download, Freely available | nif-0000-03184, biotools:ndb, r3d100010415 | https://bio.tools/ndb, https://doi.org/10.17616/R3531R | SCR_003255 | SciCrunch Registry | 2026-10-24 12:50:26 | 37 | |||||
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MITOMAP - A human mitochondrial genome database Resource Report Resource Website 100+ mentions |
MITOMAP - A human mitochondrial genome database (RRID:SCR_002996) | MITOMAP | data or information resource, database | Database of polymorphisms and mutations of the human mitochondrial DNA. It reports published and unpublished data on human mitochondrial DNA variation. All data is curated by hand. If you would like to submit published articles to be included in mitomap, please send them the citation and a pdf. | gene, genome, diabetes, disease, disease-association, high resolution screening, human, inversion, metabolism, mitochondrial dna, mutation, phenotype, polymorphism, polypeptide assignment, pseudogene, restriction site, rna, sequence, trna, unpublished, variation, mitochondria, dna, insertion, deletion, FASEB list |
is used by: HmtVar is listed by: OMICtools is related to: Hereditary Hearing Loss Homepage has parent organization: Childrens Hospital of Philadelphia - Research Institute; Pennsylvania; USA has parent organization: Emory University School of Medicine; Atlanta; Georgia; USA |
NIH ; Muscular Dystrophy Foundation ; Ellison Foundation ; Diputacion General de Aragon Grupos consolidados B33 ; NIGMS GM46915; NINDS NS21328; NHLBI HL30164; NIA AG10130; NIA AG13154; NINDS NS213L8; NHLBI HL64017; NIH Biomedical Informatics Training Grant T15 LM007443; NSF EIA-0321390; Spanish Fondo de Investigacion Sanitaria PI050647; Ciber Enfermedades raras CB06/07/0043 |
PMID:17178747 PMID:15608272 PMID:9399813 PMID:9016535 PMID:8594574 |
Except where otherwise noted, Creative Commons Attribution License, The community can contribute to this resource | nif-0000-00511, OMICS_01641 | SCR_002996 | SciCrunch Registry | 2026-10-24 12:50:25 | 405 | ||||||
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MiST - Microbial Signal Transduction database Resource Report Resource Website 10+ mentions |
MiST - Microbial Signal Transduction database (RRID:SCR_003166) | MiST | data or information resource, database | Database which contains the signal transduction proteins for complete and draft bacterial and archaeal genomes. The MiST2 database identifies and catalogs the repertoire of signal transduction proteins in microbial genomes. | signal transduction proteins, bacterial genome, archaeal genome, microbial genome, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: University of Tennessee Knoxville; Tennessee; USA |
South Carolina Research Association ; DOE Office of Science ; NIH ; NIGMS GM083177 |
PMID:19900966 | Free, Freely available | biotools:mist, nif-0000-03140 | https://bio.tools/mist | SCR_003166 | SciCrunch Registry | MiST 2.2, Microbial Signal Transduction Database, Microbial Signal Transduction database (MiST), MiST2 | 2026-10-24 12:50:26 | 35 | ||||
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IntegromeDB Resource Report Resource Website 1+ mentions |
IntegromeDB (RRID:SCR_004620) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 26, 2016. Search engine that integrates over 100 curated and publicly contributed data sources and provides integrated views on the genomic, proteomic, transcriptomic, genetic and functional information currently available. Information featured in the database includes gene function, orthologies, gene expression, pathways and protein-protein interactions, mutations and SNPs, disease relationships, related drugs and compounds. | catalog, search engine, gene, protein, gene regulation, gene expression, protein-protein interaction, pathway, metagenomics, mutation, disease, transcriptional regulation, genomics, transcriptomics, genetics, function, interaction, ortholog |
is related to: ABS: A Database of Annotated Regulatory Binding Sites From Orthologous Promoters has parent organization: University of California at San Diego; California; USA |
NIH ; NIGMS R01 GM084881 |
PMID:22260095 PMID:20427517 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_63198 | SCR_004620 | SciCrunch Registry | Integrome DB | 2026-10-24 12:50:30 | 3 | ||||||
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Phenologs Resource Report Resource Website 1+ mentions |
Phenologs (RRID:SCR_005529) | Phenologs | data or information resource, database | Database for identifying orthologous phenotypes (phenologs). Mapping between genotype and phenotype is often non-obvious, complicating prediction of genes underlying specific phenotypes. This problem can be addressed through comparative analyses of phenotypes. We define phenologs based upon overlapping sets of orthologous genes associated with each phenotype. Comparisons of >189,000 human, mouse, yeast, and worm gene-phenotype associations reveal many significant phenologs, including novel non-obvious human disease models. For example, phenologs suggest a yeast model for mammalian angiogenesis defects and an invertebrate model for vertebrate neural tube birth defects. Phenologs thus create a rich framework for comparing mutational phenotypes, identify adaptive reuse of gene systems, and suggest new disease genes. To search for phenologs, go to the basic search page and enter a list of genes in the box provided, using Entrez gene identifiers for mouse/human genes, locus ids for yeast (e.g., YHR200W), or sequence names for worm (e.g., B0205.3). It is expected that this list of genes will all be associated with a particular system, trait, mutational phenotype, or disease. The search will return all identified model organism/human mutational phenotypes that show any overlap with the input set of the genes, ranked according to their hypergeometric probability scores. Clicking on a particular phenolog will result in a list of genes associated with the phenotype, from which potential new candidate genes can identified. Currently known phenotypes in the database are available from the link labeled ''Find phenotypes'', where the associated gene can be submitted as queries, or alternately, can be searched directly from the link provided. | gene, phenotype, ortholog, genotype, human, mouse, yeast, worm | has parent organization: University of Texas at Austin; Texas; USA | Texas Advanced Research Program ; Welch Foundation ; Packard Fellowship ; March of Dimes ; Texas Institute for Drug and Diagnostic Development ; NSF ; NIH ; NIGMS |
PMID:20308572 | nlx_144624 | SCR_005529 | SciCrunch Registry | phenologs.org, Phenologs - Systematic discovery of non-obvious disease models and candidate genes | 2026-10-24 12:50:34 | 4 | ||||||
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LAMHDI: The Initiative to Link Animal Models to Human DIsease Resource Report Resource Website 1+ mentions |
LAMHDI: The Initiative to Link Animal Models to Human DIsease (RRID:SCR_008643) | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE, it has been replaced by Monarch Initiative. LAMHDI, the initiative to Link Animal Models to Human DIsease, is designed to accelerate the research process by providing biomedical researchers with a simple, comprehensive Web-based resource to find the best animal model for their research. LAMDHI is a free, Web-based, resource to help researchers bridge the gap between bench testing and human trials. It provides a free, unbiased resource that enables scientists to quickly find the best animal models for their research studies. LAMHDI includes mouse data from MGI, the Mouse Genome Informatics website; zebrafish data from ZFIN, the Zebrafish Model Organism Database; rat data from RGD, the Rat Genome Database; yeast data from SGD, the Saccharomyces Genome Database; and fly data from FlyBase. LAMHDI.org is operational today, and data is added regularly. Enhancements are planned to let researchers contribute their knowledge of the animal models available through LAMHDI. The LAMHDI goal is to allow researchers to share information about and access to animal models so they can refine research and testing, and reduce or replace the use of animal models where possible. LAMHDI Database Search: LAMHDI brings together scientifically validated information from various sources to create a composite multi-species database of animal models of human disease. To do this, the LAMHDI database is prepared from a variety of sources. The LAMHDI team takes publicly available data from OMIM, NCBI''s Entrez Gene database, Homologene, and WikiPathways, and builds a mathematical graph (think of it as a map or a web) that links these data together. OMIM is used to link human diseases with specific human genes, and Entrez provides universal identifiers for each of those genes. Human genes are linked to their counterpart genes in other species with Homologene, and those genes are linked to other genes tentatively or authoritatively using the data in WikiPathways. This preparatory work gives LAMHDI a web of human diseases linked to specific human genes, orthologous human genes, homologous genes in other species, and both human and non-human genes involved in specific metabolic pathways associated with those diseases. LAMHDI includes model data that partners provide directly from their data structures. For instance, MGI provides information about mouse models, including a disease for each model, as well as some genetic information (the ID of the model, in fact, identifies one or more genes). ZFIN provides genetic information for each zebrafish model, but no diseases, so zebrafish models are integrated by using the genes as the glue. For instance, a zebrafish model built to feature the zebrafish PKD2 gene would plug into the larger disease-gene map at the node representing the zebrafish PKD2 gene, which is connected to the node representing the human PKD2 gene, which in turn is connected to the node representing the human disease known as polycystic kidney disease. (Some of the partner data LAMHDI receives can even extend the base map. MGI provides a disease for every model, and in some cases this allows the creation of a disease-to-gene relationship in the LAMHDI database that might not already be documented in the OMIM dataset.) With curatorial and model information in hand, LAMHDI runs a lengthy automated process that exhaustively searches for every possible path between each model and each disease in the data, up to a set number of hops, producing for each disease-to-model pair a set of links from the disease to the model. The algorithm avoids circular paths and paths that include more than one disease anywhere in the middle of the path. At the end of this phase, LAMHDI has a comprehensive set of paths representing all the disease-to-model relationships in the data, varying in length from one hop to many hops. Each disease-to-model path is essentially a string of nodes in the data, where each node represents a disease, a gene, a linkage between genes (an orthologue, a homologue, or a pathway connection, referred to as a gene cluster or association), or a model. Each node has a human-friendly label, a set of terms and keywords, and - in most cases - a URL linking the node to the data source where it originated. When a researcher submits a search on the LAMHDI website, LAMHDI searches for the user''s search terms in its precomputed list of all known disease-to-model paths. It looks for the terms not only in the disease and model nodes, but also in every node along each path. The complete set of hits may include multiple paths between any given disease-to-model pair of endpoints. Each of these disease-to-model pair sets is ordered by the number of hops it involves, and the one involving the fewest hops is chosen to represent its respective disease-to-model pair in the search results presented to the user. Results are sorted by scores that represent their matches. The number of hops is one barometer of the strength of the evidence linking the model and the disease; fewer hops indicates the relationship is stronger, more hops indicates it may be weaker. This indicator works best for comparing models from a single partner dataset: MGI explicitly identifies a disease for each mouse model, so there can be disease-to-model hits for mice that involve just one hop. Because ZFIN does not explicitly identify a disease for each model, no zebrafish model will involve fewer than four hops to the nearest disease, from the zebrafish model to a zebrafish gene to a gene cluster to a human gene to a human disease. | fly, animal, biologic, community, database, disease, genome, human, informatics, international, internet, knockout, model, mouse, network, organism, pathway, primate, rat, research, saccharomyces, testing, treatment, trial, worm, zebrafish |
has parent organization: University of Washington; Seattle; USA has parent organization: University of Wisconsin-Madison; Wisconsin; USA has parent organization: University of California at San Diego; California; USA |
NIH NS058296; NIH OD011883 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-32417 | SCR_008643 | SciCrunch Registry | LAMHDI | 2026-10-24 12:50:56 | 2 | |||||||
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Project Tycho Resource Report Resource Website 1+ mentions |
Project Tycho (RRID:SCR_010489) | data or information resource, database | Database to advance the availability and use of public health data for science and policy making that includes data from all weekly notifiable disease reports for the United States dating back to 1888. Additional U.S. and international data will be released twice yearly. | population, disease, metadata standard, vaccination, public health data, health, incidence rate, death, statistics | has parent organization: University of Pittsburgh; Pennsylvania; USA | Smallpox, Polio, Measles, Mumps, Rubella, Hepatitis A, Whooping cough, Diphtheria, Etc. | Bill and Melinda Gates Foundation ; NIH |
PMID:24283231 PMID:24611167 |
Account required, Creative Commons Attribution License | nlx_157982, r3d100011948 | SCR_010489 | SciCrunch Registry | Project Tycho Data for Health | 2026-10-24 12:50:58 | 3 | |||||
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Nanomaterial Registry Resource Report Resource Website 100+ mentions |
Nanomaterial Registry (RRID:SCR_013700) | MIAN | data or information resource, database | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on June 9,2023. Registry that archives curated nanomaterial research data and their biological and environmental implications. The Registry provides data management plans for researchers, and accepts users' public-ready data, archive them, integrate them into the registry, allowing for the data to be shared publicly. Users can request more information on specific nanomaterial records, compare multiple nanomaterials, and export data to their desktop. | registry, information resource, nanomaterial, data management | is listed by: NIH Data Sharing Repositories | NIH | DOI:10.1109/BIBMW.2012.6470258 | THIS RESOURCE IS NO LONGER IN SERVICE | SCR_013793, r3d100011129 | https://doi.org/10.17616/R38S53 | SCR_013700 | SciCrunch Registry | 2026-10-24 12:51:08 | 151 | |||||
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Xenopus Gene Collection Resource Report Resource Website 1+ mentions |
Xenopus Gene Collection (RRID:SCR_007023) | XGC | biomaterial supply resource, material resource | NIH initiative to support production of cDNA libraries, clones and 5'/3' sequences and to provide set of full-length (open reading frame) sequences and cDNA clones of expressed genes for Xenopus laevis and Xenopus tropicalis. Clones distribution is outsourced to for profit companies. Project concluded in September 2008. Resources generated by XGC are publicly accessible to biomedical research community. All sequences are deposited into GenBank.Corresponding clones are available through IMAGE clone distribution network. With conclusion of XGC project, GenBank records of XGC sequences will be frozen, without further updates. Since knowledge of what constitutes full-length coding region for some of genes and transcripts for which we have XGC clones will likely change in future, users planning to order XGC clones will need to monitor for these changes. Users can make use of genome browsers and gene-specific databases, such as UCSC Genome browser, NCBI's Map Viewer, and Entrez Gene, to view relevant regions of genome (browsers) or gene-related information (Entrez Gene). | est sequencing, expressed gene, frog, gene, adult, cdna, genomic, open reading frame, sequencing, stage, tag, xenopus laevis, xenopus tropicalis, sequence, expressed sequence tag, cdna, vector, cdna library, clone, 5'/3' sequence, frozen |
is listed by: One Mind Biospecimen Bank Listing is related to: One Mind Biospecimen Bank Listing is related to: ATCC is related to: GenBank is related to: Invitrogen Clones has parent organization: National Cancer Institute |
NIH Blueprint for Neuroscience Research ; NIH |
Free, Freely available | nif-0000-00224 | https://genecollections.nci.nih.gov/XGC/ | SCR_007023 | SciCrunch Registry | Xenopus Gene Collection | 2026-10-24 12:51:28 | 4 | |||||
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ZMP Resource Report Resource Website 10+ mentions |
ZMP (RRID:SCR_006161) | ZMP | biomaterial supply resource, material resource | Create knockout alleles in protein coding genes in the zebrafish genome, using a combination of whole exome enrichment and Illumina next generation sequencing, with the aim to cover them all. Each allele created is analyzed for morphological differences and published on the ZMP site. Transcript counting is performed on alleles with a morphological phenotype. Alleles generated are archived and can be requested from this site through the Zebrafish International Resource Center (ZIRC). You may register to receive updates on genes of interest, or browse a complete list, or search by Ensembl ID, gene name or human and mouse orthologue. | phenotype, genome, gene, disease model, allele, orthologue, mutant, chromosome, human orthologue, mouse orthologue, mutation, knockout, human, mouse, transcript |
is listed by: One Mind Biospecimen Bank Listing is related to: Zebrafish International Resource Center has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom |
Wellcome Trust Sanger Institute; Hinxton; United Kingdom ; NIH ; ZF-HEALTH |
Free and open | nlx_151662 | SCR_006161 | SciCrunch Registry | Zebrafish Mutation Project (ZMP), Zebrafish Mutation Project, ZMP - Zebrafish Mutation Project | 2026-10-24 12:51:27 | 25 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
