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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
OrthoMCL DB: Ortholog Groups of Protein Sequences
 
Resource Report
Resource Website
1000+ mentions
OrthoMCL DB: Ortholog Groups of Protein Sequences (RRID:SCR_007839) data or information resource, database OrthoMCL is a genome-scale algorithm for grouping orthologous protein sequences. It provides not only groups shared by two or more species/genomes, but also groups representing species-specific gene expansion families. OrthoMCL starts with reciprocal best hits within each genome as putative in-paralog/recent paralog pairs and reciprocal best hits across any two genomes as putative ortholog pairs. Related proteins are interlinked in a similarity graph. Then MCL (Markov Clustering algorithm,Van Dongen 2000; www.micans.org/mcl) is invoked to split mega-clusters. This process is analogous to the manual review in COG construction. MCL clustering is based on weights between each pair of proteins, so to correct for differences in evolutionary distance the weights are normalized before running MCL. FASEB list has parent organization: University of Pennsylvania; Philadelphia; USA r3d100012462, nif-0000-03230 https://doi.org/10.17616/R3FZ27 SCR_007839 OrthoMCL DB 2026-08-01 12:09:47 1051
University of Pennsylvania; Philadelphia; USA
 
Resource Report
Resource Website
1+ mentions
University of Pennsylvania; Philadelphia; USA (RRID:SCR_004275) UPenn, Penn State university University of Pennsylvania is private Ivy League research university located in University City neighborhood of Philadelphia, Pennsylvania. Established in 1740, UPenn has 4 undergraduate schools and 12 graduate schools. undergraduate, graduate, master's, doctoral, phD, institution, university uses: Research Accelerator
is affiliated with: Diabetes Research Centers
is related to: International AMD Genetics Consortium
is related to: Clinical and Translational Science Awards Consortium
is related to: Cooperative Human Tissue Network
is related to: PIVOT software
is related to: Urinary Stone Disease Research Network
is parent organization of: Penn Cell and Developmental Biology Zebrafish Core
is parent organization of: Penn Clinical Research Computing Unit
is parent organization of: Penn Community Outreach Using Health System Informatics Core
is parent organization of: Penn Hippocampus Atlas
is parent organization of: NIH/Merial Veterinary Scholars Program
is parent organization of: Penn Diabetes Research Center Mouse Phenotyping Physiology and Metabolism Core
is parent organization of: Penn Research Instrumentation Shop
is parent organization of: Penn Small Animal Imaging Facility: PET/SPECT/CT Sub-Core
is parent organization of: Penn Translational Biomarker Core
is parent organization of: Diffusion Tensor Imaging ToolKit
is parent organization of: ApiDots
is parent organization of: Hierarchical Attribute Matching Mechanism for Elastic Registration
is parent organization of: ITK-SNAP
is parent organization of: Database of Transcribed Sequences
is parent organization of: PennCNV
is parent organization of: Brain lesion segmentation tool using SVM
is parent organization of: RNA Abundance Database
is parent organization of: Cognitive Electrophysiology Data Portal
is parent organization of: ANTS - Advanced Normalization ToolS
is parent organization of: Atrophy Simulation Package
is parent organization of: 3DViewnix
is parent organization of: miRGen
is parent organization of: OrthoMCL DB: Ortholog Groups of Protein Sequences
is parent organization of: University of Pennsylvania School of Medicine Penn Diabetes Research Center Pancreatic Islet Cell Biology Core Facility
is parent organization of: BRAID
is parent organization of: AHEAD
is parent organization of: Penn Laser Confocal Microscope Core
is parent organization of: DRAMMS
is parent organization of: fMRI Grocer
is parent organization of: Penn Automated Claims and Medical Record Databases
is parent organization of: CHOP Biostatistics and Data Management Core
is parent organization of: CHOP CTRC Behavioral Neurosciences Core
is parent organization of: CHOP CTRC Cardiovascular Imaging Core
is parent organization of: CHOP CTRC Nutrition Core Nutrition Assessment
is parent organization of: CHOP CTRC Ophthalmology Core
is parent organization of: CHOP Clinical Trials Office
is parent organization of: CHOP Human Embryonic stem cell/induced pluripotent stem cell Core
is parent organization of: CHOP Nucleic Acid/Protein Core
is parent organization of: CHOP Pathology Core Laboratories
is parent organization of: Penn/CHOP CTRC Informatics Services Core
is parent organization of: Monell Behavioral and Physiological Phenotyping Core
is parent organization of: Monell Chemosensory Receptor Signaling Core
is parent organization of: Monell Genotyping and DNA/RNA Analysis Core
is parent organization of: Monell Histology and Cellular Localization Core
is parent organization of: Penn Mass Spectrometry Molecular Profiling Core
is parent organization of: Penn BioMechanics Core Facility
is parent organization of: Penn Biological Chemistry Resource Center
is parent organization of: Penn Cancer Histology Core
is parent organization of: Penn Cell Center Services Facility
is parent organization of: Penn Cell Center Stockroom
is parent organization of: Penn Cell and Developmental Biology Microscopy Core
is parent organization of: Penn Chemistry NMR Facility
is parent organization of: Penn Clinical Cell and Vaccine Production Facility
is parent organization of: Penn Community Engagement and Research Core
is parent organization of: Penn/CHOP CTRC Bionutrition Research Core Dietary Assessment
is parent organization of: Penn Electron Microscopy Resource Laboratory
is parent organization of: Penn Flow Cytometry and Cell Sorting Resource Laboratory
is parent organization of: Penn Investigational Drug Service
is parent organization of: Penn Gene Targeting Service
is parent organization of: University of Pennsylvania Molecular Profiling Facility
is parent organization of: Penn High-Throughput Sequencing Facility
is parent organization of: University of Pennsylvania High-performance Computing
is parent organization of: Penn Histology and Gene Expression Core
is parent organization of: Penn Human Immunology Core
is parent organization of: Penn Interventional Radiology Animal Catheter Lab
is parent organization of: Penn Mass Spectrometry Facility
is parent organization of: University of Pennsylvania Molecular Profiling Facility Bioinformatics
is parent organization of: Penn NBIC Probe Facility
is parent organization of: Penn Neurobehavior Testing Core
is parent organization of: Penn Next-Generation Sequencing Core
is parent organization of: Penn Proteomics and Systems Biology Core
is parent organization of: Penn Diabetes Research Center Radioimmunoassay and Biomarkers Core Facility
is parent organization of: Penn Regional Nanotechnology Facility
is parent organization of: Penn Small Animal Imaging Facility
is parent organization of: Penn Small Animal Imaging Facility: MRI/MRS Sub-Core
is parent organization of: Penn Small Animal Imaging Facility: Optical/Bioluminescence Sub-Core
is parent organization of: Penn Small Animal Imaging Facility: Ultrasound Sub-Core
is parent organization of: Pennsylvania University Perelman School of Medicine Stem Cell and Xenograft Core Facility
is parent organization of: Penn Diabetes Research Center Transgenic and Chimeric Mouse Core Facility
is parent organization of: University of Pennsylvania Center for Molecular Therapy for Cystic Fibrosis Vector Core Facility
is parent organization of: Penn/CHOP CTRC Research Nurse Core
is parent organization of: Penn/CHOP CTRC Sleep Core
is parent organization of: Penn/CHOP CTRC Study Design and Biostatistics Core
is parent organization of: Penn/CHOP CTRC Translational Core Laboratories
is parent organization of: Penn/CHOP Office of Human Subject Recruitment and Protection
is parent organization of: TESS: Transcription Element Search System
is parent organization of: CoRAL - Classification of RNAs by Analysis of Length
is parent organization of: University of Pennsylvania Labs and Facilities
is parent organization of: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA
is parent organization of: SBIA
is parent organization of: TalkBank
is parent organization of: IsoformEx
is parent organization of: Neuron-C
is parent organization of: GIMME
is parent organization of: DTI-TK
is parent organization of: Referral Center for Animal Models of Human Genetic Diseases
is parent organization of: MAJIQ
is parent organization of: ReBATE
is parent organization of: PennAI
is parent organization of: ITK-SNAP
is parent organization of: Pharmacogenetics of Nicotine Addiction Treatment
is parent organization of: 4D Genome
is parent organization of: AsPredicted
is parent organization of: HistoloZee
is parent organization of: University of Pennsylvania School of Veterinary Medicine Center for Host Microbial Interactions Core Facility
is parent organization of: University of Pennsylvania Electronic Phenotyping Resource Core Facility
is parent organization of: University of Pennsylvania Penn Vet Imaging Core Facility
is parent organization of: University of Pennsylvania School of Dental Medicine Tissue Processing Laboratory Core Facility
is parent organization of: University of Pennsylvania Institute for RNA Innovation Engineered mRNA and Targeted Nanomedicine Core Facility
is parent organization of: University of Pennsylvania Institute for Immunology and Immune Health I3H Core Facility
is parent organization of: University of Pennsylvania Institute for RNA Innovation Targeting Core Facility
is parent organization of: University of Pennsylvania Bollinger Digital Fabrication Laboratory Core Facility
is parent organization of: University of Pennsylvania Perelman School of Medicine Clinical Research Collaboration Unit Core Facility
has organization facet: C4R
Wikidata:Q49117, SCR_022445, grid.25879.31, ISNI:0000 0004 1936 8972, nlx_24937, Crossref funder ID:100006920 https://ror.org/00b30xv10 SCR_004275 University of Pennsylvania 2026-08-01 12:02:34 5

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