FieldTrip
Resource Report
Resource Website
1000+ mentions
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FieldTrip (RRID:SCR_004849)
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software toolkit, software application, data processing software, data analysis software, software resource
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Software toolbox for analysis of MEG, EEG, and other electrophysiological data. Used by experimental neuroscientists.
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MEG, EEG, iEEG, analysis, data, time, frequency, source, reconstruction, dipole, beamformers, non parametric, statistical, testing
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uses: MATLAB
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: Human Connectome Coordination Facility
has parent organization: Radboud University; Nijmegen; The Netherlands
works with: CoSMoMVPA
works with: SleepTrip
works with: EEGLAB
works with: SPM
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Human Connectome project ;
NIH Blueprint for Neuroscience Research ;
Netherlands Ministry of Economic Affairs ;
Netherlands Ministry of Education Culture and Science |
PMID:21253357 |
Free, Available for download, Freely available, Tutorial available |
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nlx_143928 |
http://www.nitrc.org/projects/fieldtrip |
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SCR_004849 |
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2026-08-03 09:32:45 |
3073 |
SPM
Resource Report
Resource Website
5000+ mentions
Issue
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SPM (RRID:SCR_007037)
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SPM
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software application, data processing software, data analysis software, image analysis software, software resource
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Software package for analysis of brain imaging data sequences. Sequences can be a series of images from different cohorts, or time-series from same subject. Current release is designed for analysis of fMRI, PET, SPECT, EEG and MEG.
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analysis, brain, imaging, data, sequence, fMRI, PET, SPECT, EEG, MEG, bio.tools
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uses: Neuroimaging Data Model
uses: imcalc: SPM batch image calculator
is used by: rsfMRI_fconn calculation
is used by: Automatic Analysis
is used by: auto_acpc_reorient
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: 3DVC
is listed by: Debian
is listed by: bio.tools
is listed by: SoftCite
is affiliated with: Clinical Toolbox for SPM
is affiliated with: Statistical non-Parametric Mapping
is related to: WFU Biological Parametric Mapping Toolbox
is related to: vis: SPM Visualized Statistics toolbox
is related to: LEAD-DBS
is related to: CCHMC Pediatric Brain Templates
is related to: IBMA toolbox
is related to: ArtRepair for robust fMRI
is related to: ASL data processing tool box
is related to: BrainVISA / Anatomist
is related to: MRIcro Software
is related to: xjView: A Viewing Program For SPM
is related to: BrainMagix SPM Viewer
is related to: MarsBaR region of interest toolbox for SPM
is related to: NIRS-SPM
is related to: SPM SS - fMRI functional localizers
is related to: Wisconsin White Matter Hyperintensities Segmentation Toolbox
is related to: Dementia-specific FDG PET Template for SPM analyses
is related to: SPM Anatomy Toolbox
is related to: MIPAV: Medical Image Processing and Visualization
is related to: MATLAB
is related to: hMRI-toolbox
is related to: Sandwich Estimator Toolbox
has parent organization: University College London; London; United Kingdom
is required by: MRTool
provides: TSDiffAna
has plug in: ICN_Atlas
works with: UManitoba - JHU Functionally Defined Human White Matter Atlas
works with: NIAG Addiction Data
works with: ICN_Atlas
works with: spm_auto_reorient_coregister
works with: Computational Anatomy Toolbox for SPM
works with: FieldTrip
works with: POAS4SPM
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Free, Available for download, Freely available |
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biotools:SPM |
https://github.com/spm/spm12, https://bio.tools/SPM |
https://www.fil.ion.ucl.ac.uk/spm/ |
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SCR_007037 |
Statistical Parametric Mapping, SPM5, SPM2, SPM12, Statistical Parametric Mapping Software, SPM99, SPM8, SPM, SPM96 |
2026-08-03 09:33:16 |
8694 |
SleepTrip
Resource Report
Resource Website
10+ mentions
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SleepTrip (RRID:SCR_017318)
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software resource, data processing software, software application, data analysis software
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Software as branch of FieldTrip with added functionality for sleep analyses, like calculating sleep tables, descriptives, ploting hypnograms, detecting slow waves, sleep spindles, REMS and their cooccurrence etc., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.
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slow, wave, oscillation, spindle, cooccurrence, rapid, eye, movements, sleep table, hypnogram
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is related to: SpiSOP
works with: FieldTrip
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THIS RESOURCE IS NO LONGER IN SERVICE |
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https://github.com/Frederik-D-Weber/sleeptrip |
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SCR_017318 |
SpiSOP |
2026-08-03 09:36:50 |
14 |
Radboud University; Nijmegen; The Netherlands
Resource Report
Resource Website
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Radboud University; Nijmegen; The Netherlands (RRID:SCR_011489)
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Radboud
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university
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The Radboud University is a public university with a strong focus on research located in Nijmegen, the Netherlands.
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university, public, research, Netherlands
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is related to: European Lead Factory
is parent organization of: GimmeMotifs
is parent organization of: CATCHprofiles
is parent organization of: Database of Secondary Structure Assignments
is parent organization of: Donders Machine Learning Toolbox
is parent organization of: Blueprint Epigenome
is parent organization of: FieldTrip
is parent organization of: HSSP
is parent organization of: Project HOPE
is parent organization of: NRG-CING
is parent organization of: G Protein-Coupled Receptor Data Base
is parent organization of: NucleaRDB
is parent organization of: PhyloPat
is parent organization of: GeneSeeker
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ISNI:122931605, Crossref funder ID:501100008459, nlx_79396, Wikidata:Q632004, grid.5590.9 |
https://ror.org/016xsfp80 |
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SCR_011489 |
Radboud Universiteit, Katholieke Universiteit Nijmegen, Radboud University, Catholic University of Nijmegen, Radboud University Nijmegen, Radboud Universiteit Nijmegen |
2026-08-01 12:04:26 |
0 |
EEGLAB
Resource Report
Resource Website
5000+ mentions
|
EEGLAB (RRID:SCR_007292)
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EEGLAB
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software toolkit, software resource, software application, data processing software
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Interactive Matlab toolbox for processing continuous and event-related EEG, MEG and other electrophysiological data incorporating independent component analysis (ICA), time/frequency analysis, artifact rejection, event-related statistics, and several useful modes of visualization of the averaged and single-trial data. First developed on Matlab 5.3 under Linux, EEGLAB runs on Matlab v5 and higher under Linux, Unix, Windows, and Mac OS X (Matlab 7+ recommended). EEGLAB provides an interactive graphic user interface (GUI) allowing users to flexibly and interactively process their high-density EEG and other dynamic brain data using independent component analysis (ICA) and/or time/frequency analysis (TFA), as well as standard averaging methods. EEGLAB also incorporates extensive tutorial and help windows, plus a command history function that eases users'' transition from GUI-based data exploration to building and running batch or custom data analysis scripts. EEGLAB offers a wealth of methods for visualizing and modeling event-related brain dynamics, both at the level of individual EEGLAB ''datasets'' and/or across a collection of datasets brought together in an EEGLAB ''studyset.'' For experienced Matlab users, EEGLAB offers a structured programming environment for storing, accessing, measuring, manipulating and visualizing event-related EEG data. For creative research programmers and methods developers, EEGLAB offers an extensible, open-source platform through which they can share new methods with the world research community by publishing EEGLAB ''plug-in'' functions that appear automatically in the EEGLAB menu of users who download them. For example, novel EEGLAB plug-ins might be built and released to ''pick peaks'' in ERP or time/frequency results, or to perform specialized import/export, data visualization, or inverse source modeling of EEG, MEG, and/or ECOG data. EEGLAB Features * Graphic user interface * Multiformat data importing * High-density data scrolling * Defined EEG data structure * Open source plug-in facility * Interactive plotting functions * Semi-automated artifact removal * ICA & time/frequency transforms * Many advanced plug-in toolboxes * Event & channel location handling * Forward/inverse head/source modeling
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visualization, eeg modeling, independent component analysis, meg modeling, eeg, erp, spectral decomposition, single-trial, matlab, meg, electrophysiology, format conversion, source separation analysis, fourier time-domain analysis, spectral analysis, temporal wavelet analysis, anova, event related potential, three dimensional display, two dimensional display
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uses: ERPwavelab
is used by: PeriodAmplitudeAnalysis
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is listed by: Biositemaps
is listed by: SoftCite
is related to: Neural Maestro
is related to: Measure Projection Toolbox
is related to: NFT
is related to: Source Information Flow Toolbox
is related to: HeadIT
is related to: BCILAB
is related to: EEGVIS
is related to: EYE-EEG (combined eye-tracking & EEG)
is related to: Libeep EEGLAB plugin
is related to: The Bergen fMRI Toolbox Plugin for EEGLab
is related to: BVA import/export EEGLAB plugin
has parent organization: Swartz Center for Computational Neuroscience
has plug in: Dusk2Dawn
works with: FieldTrip
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NINDS |
PMID:15102499 |
Free, Available for download, Freely available |
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nif-0000-00076 |
https://eeglab.org/others/EEGLAB_References.html |
http://www.nitrc.org/projects/incf_eeglab/, http://sccn.ucsd.edu/eeglab/index.html |
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SCR_007292 |
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2026-08-03 09:33:27 |
6721 |
MATLAB
Resource Report
Resource Website
10000+ mentions
|
MATLAB (RRID:SCR_001622)
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MATLAB
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image processing software, programming language, software application, data processing software, software resource
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Multi paradigm numerical computing environment and fourth generation programming language developed by MathWorks. Allows matrix manipulations, plotting of functions and data, implementation of algorithms, creation of user interfaces, and interfacing with programs written in other languages, including C, C++, Java, Fortran and Python. Used to explore and visualize ideas and collaborate across disciplines including signal and image processing, communications, control systems, and computational finance.
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computing, analyze, visualization, algorithm, plot, vector, matrix
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uses: Functional Network Connectivity (FNC)
uses: MVGC Multivariate Granger Causality Matlab Toolbox
uses: UltraMegaSort 2000
uses: Elastica2D
uses: OSort
uses: COMPASS
is used by: Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX)
is used by: Orientation Distribution Function in Constant Solid Angle (CSA-ODF)
is used by: NiiStat
is used by: NeuroElf
is used by: MRIcroS
is used by: GraphVar: A toolbox for comprehensive graph analyses of functional brain connectivity
is used by: GIMME
is used by: GazeReader
is used by: Efficient Permutation Testing
is used by: APERTURE
is used by: Tscratch
is used by: PreSurgMapp
is used by: SimTracker
is used by: ICASSO
is used by: TherMos
is used by: Mixed Effect Model of Genetic-Set and Environment Interaction
is used by: FMAToolbox
is used by: BABAM
is used by: Soma-Segmentation
is used by: SpiSOP
is used by: CHIPS
is used by: GrowthToolbox
is used by: RNAcompete
is used by: MicrobeTracker
is used by: Sound Analysis Pro
is used by: Vocal Inventory Clustering Engine (VoICE)
is used by: Automatic Analysis
is used by: Measurement Control And Data Analysis Software
is used by: Fluorescent Imaging Analysis Software FIMAS
is used by: GEMB
is used by: IronClust
is used by: PAM
is used by: calciumImagingAnalysis
is used by: TractionsForAll
is used by: DeePVP
is used by: FieldTrip
is used by: Protofilament Bending Models
is used by: Toolkit for MIRA LAB Striatal Segmentation
is used by: EvaluateMuscleTissueWithElastography
is used by: Microscopy_tif_Channel_Quant_MATLAB
is used by: CARNet TFA Function
is listed by: SoftCite
is related to: Spatio- Spectro- Temporal Receptive Field
is related to: Extensible MATLAB Medical image Analysis
is related to: MultiPhase-SEG
is related to: An Open-Source MATLAB-to-Python Compiler
is related to: Mastrave modelling library
is related to: Libeep EEGLAB plugin
is related to: The Bergen fMRI Toolbox Plugin for EEGLab
is related to: Electrographic Seizure Analyzer
is related to: BVA import/export EEGLAB plugin
is related to: ROIs selection with a non-graphical user interface
is related to: Reglo ICC control with Matlab
is related to: QModeling
is related to: MicroFilament Analyzer
is related to: Letswave
is related to: KiloSort
is related to: Suite2P
is related to: kCSD-Matlab
is related to: nonparametricGGC_toolbox
is related to: User Friendly Functional Connectivity - UF²C
is related to: Frozen Noise
is related to: Microscopy Image Browser
is related to: MrDiffusion
is related to: rsfMRI_fconn calculation
is related to: SPM
is related to: Colour maps for brain imaging
is related to: Tools for NIfTI and ANALYZE image
is related to: PESTO
is related to: PPR-Meta
is related to: NMF Toolbox
is related to: SynapseLocator
is related to: SBFSEM-tools
is related to: Brain Gene Expression Analysis toolbox
is related to: Neural Ideal
is related to: Computer Vision System Toolbox
is related to: LAN toolbox
is related to: hMRI-toolbox
is related to: Brainstorm
is related to: auto_acpc_reorient
is related to: SuperSegger
is related to: MNE software
is related to: Toolbox for Representational Similarity Analysis
is related to: Sandwich Estimator Toolbox
is related to: alpha helix coordinate frame simulation
is related to: ZebEyeTrack
is related to: PottersWheel
is related to: Calliope calcium imaging processing package
is related to: MVPA Light
is related to: Amsterdam Decoding And Modeling
is related to: Residue Iteration Decomposition
is related to: ObjectFinder
is related to: Deep Learning Toolbox
is required by: OSort
is required by: COMPASS
is required by: MicrobeTracker
is required by: Wave_clus
is required by: Mass Univariate ERP Toolbox
is required by: Linear Fascicle Evaluation
is required by: PALM
works with: CoSMoMVPA
works with: Nexus
works with: Empirical Gramian Framework
works with: OriginPro
works with: circular statistics
works with: MRspa
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PMID:30609523
PMID:21934110 |
Restricted |
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nlx_153890 |
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SCR_001622 |
matlab, MATLAB -The Language of Technical Computing, MATLAB, matrix laboratory |
2026-08-03 09:31:29 |
61711 |
NeuroImaging Tools and Resources Collaboratory (NITRC)
Resource Report
Resource Website
100+ mentions
|
NeuroImaging Tools and Resources Collaboratory (NITRC) (RRID:SCR_003430)
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NITRC
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data repository, portal, community building portal, data or information resource, software resource, storage service resource, service resource, software repository
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Software repository for comparing structural (MRI) and functional neuroimaging (fMRI, PET, EEG, MEG) software tools and resources. NITRC collects and points to standardized information about structural or functional neuroimaging tool or resource.
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collaboration, information, resource, structural, functional, neuroimaging, MRI, fMRI, EEG, MEG, PET
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is used by: NIF Data Federation
is used by: Consortium for Reliability and Reproducibility
is used by: DataLad
is recommended by: National Library of Medicine
lists: Dipy
lists: 3DMeshMetric
lists: MPScope
lists: VectorValuedHistogramNormalizer
lists: Faceted Search Based Ontology Visualizer
lists: Morphometry BIRN
lists: Colin 3T/7T High-resolution Atlas
lists: CMFreg
lists: BrainFX
lists: dinifti
lists: Center for Computational Biology at UCLA
lists: Convert MNI coordinates to or from XYZ
lists: Licensing issues in software and data
lists: Local Binary Pattern Analysis Tools for MR Brain Images
lists: MIView
lists: uManager
lists: Penn Hippocampus Atlas
lists: RapidArt
lists: Scribe
lists: ShapeWorks
lists: Vervet Probabilistic Atlas
lists: Talairach Daemon
lists: ADHD-200 Preprocessed Data
lists: LORIS - Longitudinal Online Research and Imaging System
lists: NVM
lists: Maps4Mipav (Exploratory JIST)
lists: Autism Tissue Program
lists: MEG Tools
lists: PyNIfTI
lists: LONI Visualization Tool
lists: Mind Research Network - COINS
lists: OpenElectrophy
lists: CIFTI Connectivity File Format
lists: 3DSlicerLupusLesionModule
lists: BrainNetworkConstructionAnalysisPlatform
lists: COMPARE
lists: Data Format Tools
lists: GesTr
lists: I/OWA
lists: MINC Example files
lists: cbiNifti: Matlab/Octave Nifti library
lists: BRAINSCut
lists: C-PAC
lists: Connectir
lists: DicomBrowser
lists: Hitachi Optical Topography System
lists: Net Station API
lists: imcalc: SPM batch image calculator
lists: BRAINSCortex
lists: Insight Segmentation and Registration Toolkit
lists: LONI Debabeler
lists: LONI Pipeline Processing Environment
lists: NiLearn
lists: MRI Studio
lists: BraVa
lists: Brede Wiki
lists: Center for Functional Neuroimaging Technologies
lists: Philips Users Community
lists: medInria
lists: Beijing: Eyes Open Eyes Closed Study
lists: vIST/e
lists: Camino
lists: Diffusion Tensor Imaging ToolKit
lists: TORTOISE
lists: NIDAG: Neuroimaging Data Access Group
lists: MRI CVPR
lists: vuTools
lists: Medical Image Processing and Visualization in Virtual Environments
lists: Brainstorm
lists: Atlas3D
lists: FMRISTAT - A general statistical analysis for fMRI data
lists: FreeSurfer
lists: Rosetta Bit
lists: Laboratory of Neuro Imaging
lists: Group ICA of fMRI Toolbox
lists: Hierarchical Attribute Matching Mechanism for Elastic Registration
lists: Internet Brain Segmentation Repository
lists: Neural ElectroMagnetic Ontologies (NEMO) Project
lists: Wavelet-based Image Fusion
lists: ITK-SNAP
lists: Internet Brain Volume Database
lists: Statistical non-Parametric Mapping
lists: VoxBo
lists: NITRC Computational Environment
lists: Spatially Constrained Parcellation
lists: Cluster reporter
lists: Cluster Extent Correction
lists: 4D Atlases Construction
lists: CIGAL
lists: CleanLine
lists: Computational Morphometry Toolkit
lists: Cognitive Paradigm Ontology
lists: aBEAT
lists: MR Connectome Automated Pipeline
lists: International Neuroinformatics Coordinating Facility
lists: Functional Regression Analysis of DTI Tract Statistics
lists: MCIC
lists: MGDM: Multi Geometric Deformable Model
lists: MIAS Registration Toolkit
lists: Medical Image Visualization and Analysis
lists: Microstructural correlation toolbox
lists: MisterI
lists: MriWatcher
lists: Multiple Correlation Function Tool
lists: NITRC Community Conferences Workshops and Meetings
lists: BRAINSFit
lists: INCF Software Center
lists: BrainVision Analyzer
lists: COGNISION
lists: DPARSF
lists: GLIRT
lists: MINC
lists: Group Level Imputation of Statistic Maps
lists: MRIcron
lists: Inter-Group Registration Toolbox
lists: MCML and CONV
lists: MEGSIM
lists: MIRIAD
lists: MRI Defacer
lists: MS lesion segmentation challenge 2008
lists: Measure Projection Toolbox
lists: Mindboggle
lists: Mindboggle-101 atlases
lists: ModelGUI
lists: Multi-Modal MRI Reproducibility Resource
lists: MultiTracer
lists: Multicomponent T2 estimation with stimulated echo correction
lists: NCANDA: Data Integration Component
lists: NFT
lists: Net Station EEG Software
lists: Network Based Statistic Toolbox
lists: NeuroScope
lists: Numerical Fibre Generator
lists: PSTNet: MRI Simulator
lists: cortex
lists: iBEAT
lists: M3
lists: Group ICA Of EEG Toolbox
lists: 4D-PARSeR Pathological Anatomy Regression via Segmentation and Registration
lists: Automatic Segmentation Tool Adapter
lists: DTI-TEMPLATE-RHESUS-MACAQUES
lists: LONI Provenance Editor
lists: MNI N3
lists: MRI Digital Projection System
lists: NIDB - Neuroinformatics Database
lists: NIPY
lists: NIRAL Utilities
lists: NIRx NIRS Neuroimaging
lists: NIRx2nirs: A NIRx to .nirs data converter
lists: NITRC Enhanced Services
lists: NITRC GForge Extensions
lists: NPTK
lists: NeuroImaging Analysis Kit (NIAK)
lists: NiBabel
lists: NiftyRec
lists: Nipype
lists: Nirfast
lists: Nitime
lists: Non-Rigid Image Registration Evaluation Project
lists: Normative Independent Component Analysis
lists: OEI: fMRI compatible olfactometer
lists: ORS Visual SI
lists: OpenMEEG
lists: PANDA
lists: PESTICA fMRI Physio Detection/Correction
lists: PHYCAA+: adaptive physiological noise correction for BOLD fMRI
lists: ParaView
lists: Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR)
lists: Presentation
lists: PySurfer
lists: Pythagorean Displacement and Motion Regressors
lists: Quantitative Diffusion Tools
lists: R-package for adaptive DWI analysis
lists: R-package for adaptive fMRI analysis
lists: REX
lists: RFT FDR
lists: ROBEX
lists: RT Image
lists: Resource Ontology Discussion Group
lists: Rodent Brain Extraction Tool
lists: Rodent Cortical Thickness Analysis
lists: S-rep Fitting Statistics and Segmentation
lists: SCIRun
lists: SCRalyze
lists: SOCK
lists: SPHARM-MAT
lists: SPHARM-PDM Toolbox
lists: SRI24 Atlas: Normal Adult Brain Anatomy
lists: Seg3D
lists: ShapeComplexAtlas
lists: Signed Differential Mapping
lists: Sleuth
lists: Slice:Drop
lists: Slicer3 Example Modules
lists: Source Information Flow Toolbox
lists: Spanish Resting State Network
lists: Spatial Analysis 3D
lists: Stereoscopic Atlas of Intrinsic Brain Networks
lists: UNC Infant 0-1-2 Atlases
lists: UNC Primate Brain Atlas
lists: XCEDE Schema
lists: peak nii
lists: pydicom
lists: pyxnat
lists: scikit-learn
lists: shapeAnalysisMANCOVA - SPHARM tools
lists: VMTK in 3D Slicer
lists: 3D Interactive Chemical Shift Imaging
lists: BRAINSSurfaceStats
lists: Brain lesion segmentation tool using SVM
lists: Diffusion Tractography with Kalman Filter
lists: Fast Nonlocal Means for MRI denoising
lists: Monte Carlo Simulation Software: tMCimg
lists: Web Interfaces for Multiscale Images
lists: STAPLE
lists: Segmentation Validation Engine
lists: Spatial Statistical Parametric Mapping
lists: SpineSegmentation module for 3DSlicer
lists: Stochastic Tractography System
lists: Subject Library
lists: TAPIR
lists: TARQUIN
lists: Template Image Processing Library
lists: TetraMetrix
lists: TractoR: Tractography with R
lists: Triangle BioSystems
lists: TumorSim
lists: TurtleSeg
lists: UNC Human Brain Atlas
lists: VR Worlds 2
lists: Vaa3D
lists: ValMap: simple statistical mapping tool
lists: WFU Biological Parametric Mapping Toolbox
lists: WFU Pipeline
lists: Working Memory Trainer
lists: vis: SPM Visualized Statistics toolbox
lists: Synchronized Histological Image Viewing Architecture
lists: LONI ShapeViewer
lists: LONI ShapeTools
lists: FFT Library
lists: Automated recognition of brain region mentions in neuroscience literature.
lists: NUTMEG
lists: Cognitive Atlas
lists: Mouse BIRN Atlasing Toolkit
lists: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat
lists: FSL
lists: LEAD-DBS
lists: Brainscape
lists: EONS
lists: BioImage Suite
lists: ADNI - Alzheimer's Disease Neuroimaging Initiative
lists: MindSeer
lists: XNAT - The Extensible Neuroimaging Archive Toolkit
lists: brainmap.org
lists: ImageJ
lists: Neuroimaging Informatics Technology Initiative
lists: IMOD
lists: Statistics Online Computational Resource
lists: signalml.org
lists: Mouse Biomedical Informatics Research Network
lists: NIH MRI Study of Normal Brain Development
lists: MGH-USC Human Connectome Project
lists: Fusion ICA Toolbox
lists: Corpus Callosum Thickness Profile Analysis Pipeline
lists: ABIDE
lists: Mouse Connectome Project
lists: NITRC-IR
lists: Open Connectome Project
lists: neurodebian
lists: NIMH Data Archive
lists: ANTS - Advanced Normalization ToolS
lists: XNAT Extras
lists: TrackVis
lists: Brain Connectivity Toolbox
lists: FieldTrip
lists: LONI Inspector
lists: BrainLiner
lists: OpenNeuro
lists: Biomedical Informatics Research Network
lists: McConnell Brain Imaging Center MNI Macaque Atlas
lists: SINOMO
lists: DONE: Detection of Outlier NEurons
lists: Neuro Bureau
lists: ADHD-200 Sample
lists: 1000 Functional Connectomes Project
lists: PubBrain
lists: CBRAIN
lists: ENIGMA: Enhancing Neuro Imaging Genetics Through Meta-Analysis
lists: Bisque
lists: 3D Slicer
lists: Internet Analysis Tools Registry
lists: Neuromorphometrics
lists: Analysis of Functional NeuroImages
lists: Automated Image Registration
lists: BASH4RfMRI
lists: MNE software
lists: Object-Oriented Development Interface for NMR
lists: NYU CSC TestRetest
lists: Optseq - fMRI Event Scheduler
lists: TOADS-CRUISE Brain Segmentation Tools
lists: MouseTracker
lists: Hammer And WML Modules for 3D Slicer
lists: ABC (Atlas Based Classification)
lists: Allen Brain Atlas API
lists: Viking Viewer for Connectomics
lists: ARCTIC
lists: ArtRepair for robust fMRI
lists: Automatic Registration Toolbox
lists: Artifact Detection Tools
lists: Segmentation of Hippocampus Subfields
lists: ASL data processing tool box
lists: Bioelectromagnetism Matlab Toolbox
lists: PyMVPA
lists: Human Imaging Database
lists: BrainImage Software
lists: Brede Toolbox
lists: Computerized Anatomical Reconstruction and Editing Toolkit
lists: BrainColor: Collaborative Open Labeling Online Resource
lists: Registry Builder Data Harmonization and Aggregation Tool
lists: PsychoPy
lists: NiftySim
lists: NiftyReg
lists: Neurobiological Image Management System
lists: BRAINSTools
lists: MeshValmet: Validation Metric for Meshes
lists: BrainSuite
lists: DW-MRI Random Walk Simulator
lists: Web Game for Collaborative Labeling
lists: BrainVoyager Brain Tutor
lists: POLGUI - Matlab Polhemus Interface
lists: BrainVoyager Brain Viewer
lists: NeuroPub Visualizer
lists: NODDI Matlab Toolbox
lists: MITK Diffusion
lists: Federal Interagency Traumatic Brain Injury Research Informatics System
lists: BrainMaps.org
lists: PRoNTo
lists: Scalable Brain Atlas
lists: NIH Human Connectome Project
lists: Mesh-based Monte Carlo (MMC)
lists: Matlab Neuroshare Library
lists: MRtrix
lists: MABMIS: Multi-Atlas Based Multi-Image Segmentation
lists: Monte Carlo eXtreme
lists: Whole Brain Catalog
lists: BCILAB
lists: ABSORB: Atlas Building by Self-Organized Registration and Bundling
lists: VAMCA
lists: SPM
lists: Low Resolution Electromagnetic Tomography
lists: SurfStat
lists: Cambridge Brain Activation
lists: CLEAVE
lists: CoCoMac
lists: fMRI Data Center
lists: Function BIRN
lists: EEGLAB
lists: BrainVISA / Anatomist
lists: MIPAV: Medical Image Processing and Visualization
lists: NeuroLens
lists: WFU PickAtlas
lists: Open Access Series of Imaging Studies
lists: BioSig: An Imaging Bioinformatics System for Phenotypic Analysis
lists: xjView: A Viewing Program For SPM
lists: Human Connectome Coordination Facility
lists: ASL spm8
lists: Integrated Manually Extracted Annotation
lists: JIST: Java Image Science Toolkit
lists: Functional Analysis of Diffusion Tensor
lists: AHEAD
lists: ANTsR
lists: 3DBar
lists: Cancer Imaging Archive (TCIA)
lists: Pediatric Imaging Neurocognition and Genetics
lists: Atlasing of the basal ganglia
lists: cmrep
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lists: AutoSeg
lists: BXH/XCEDE Tools
lists: Baby Brain Toolkit
lists: Best Practices for Software Development
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lists: C8: Corpus Callosum Computations
lists: CAMINO-TRACKVIS
lists: CANDI Share: Schizophrenia Bulletin 2008
lists: CBS High-Res Brain Processing Tools
lists: CCSeg - Corpus Callosum Segmentation
lists: Cerebral Blood Flow Database and Analysis Pipeline
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lists: Landman NeuroImaging Tools
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lists: Cytoseg
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lists: DRAMMS
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lists: DTI BrainImageScope
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lists: DWI/DTI Quality Control Tool: DTIPrep
lists: Diffusional Kurtosis Estimator
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lists: E-Prime
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lists: EEGVIS
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lists: Fiber Optic Button Response System
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lists: GIFTI
lists: GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data
lists: HAMMER Suite
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lists: Mango
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lists: MarsBaR region of interest toolbox for SPM
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lists: MoTrak Head Motion Tracking System
lists: NCIGT Fast Imaging Library
lists: NeuroWeb - NeuroImaging Database
lists: Neuroimaging Made Easy Blog
lists: Neurophysiological Biomarker Toolbox
lists: SVV
lists: Slicer3 Module Rician noise filter
lists: UNC/Utah NAMIC DTI Fiber Analysis Framework
lists: caGWAS
lists: eConnectome
lists: elastix
lists: fMRI Artefact rejection and Sleep Scoring Toolbox
lists: MACH
lists: fMRI Grocer
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lists: fanDTasia Java Applet: DT-MRI Processing
lists: g.BSanalyze
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lists: ProbabilisticBiasCorrection
lists: Program for optimal design of blocked fMRI experiments
lists: QCQP
lists: REST: a toolkit for resting-state fMRI
lists: Robust Biological Parametric Mapping
lists: SPM SS - fMRI functional localizers
lists: Solar Eclipse Imaging Genetics tools
lists: VPixx: VIEWPixx /3D
lists: resting-state pediatric imaging template
lists: DATAPixx
lists: GTRACT
lists: Wisconsin White Matter Hyperintensities Segmentation Toolbox
lists: COBRE
lists: AngioCalc Cerebral Aneurysm Calculator
lists: USC Multimodal Connectivity Database
lists: BRAINSConstellationDetector
lists: ASA - Advanced Source Analysis
lists: BRAINSTracer
lists: EYE-EEG (combined eye-tracking & EEG)
lists: BrainVoyager
lists: Mean Machine
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lists: Neuroimaging in Python
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lists: VPixx: VIEWPixx
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lists: DIAN - Dominantly Inherited Alzheimer Network
lists: NKI-RS Enhanced Sample
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lists: GEneral NEural SImulation System: The Neurospaces Project
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lists: NeuronJ: An ImageJ Plugin for Neurite Tracing and Quantification
lists: NeuroVault
lists: National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS)
lists: NINDS Repository
lists: NKI/Rockland Sample
lists: ODIN
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lists: Open Science Framework
lists: PLINK
lists: MBF BioScience: Stereo Investigator
lists: studyforrest.org
lists: Virtual brain
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lists: 3dsvm
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lists: Atlases of amygdala and hippocampus for pediatric populations
lists: BetA-Series COrrelation
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lists: BiofilmQuant
lists: Biomag Discussion Group on Yahoo
lists: Brain Entropy in space and time (BEst)
lists: Brainnetome Atlas Viewer
lists: Brainnetome fMRI toolkit
lists: BROCCOLI
lists: C-MIND Database
lists: CARLsim: a GPU-accelerated SNN Simulator
lists: Clinical Toolbox for SPM
lists: CMIND PY
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lists: dcm2nii
lists: DICOMConvert
lists: Displacement Field Viewer
lists: DTI denoising
lists: Efficient Longitudinal Upload of Depression in the Elderly (ELUDE)
lists: Efficient Permutation Testing
lists: DTI-TK
lists: ERPwavelab
lists: ExPosition Packages
lists: Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation
lists: Forward: Accurate finite element electromagnetic head models
lists: freesurfR
lists: Functional Connectivity Analysis Tool for near-infrared spectroscopy data
lists: GazeReader
lists: gCCA
lists: Generation R Pediatric MRI Resources
lists: GIMME
lists: GLMdenoise: a fast, automated technique for denoising task-based fMRI data
lists: GraphVar: A toolbox for comprehensive graph analyses of functional brain connectivity
lists: HAMMER: Deformable Registration
lists: HBM Hackathon
lists: HDBIG
lists: High-quality diffusion-weighted imaging of Parkinsons disease
lists: MGA - Multimodal Glioma Analysis
lists: Image Synthesis Tools
lists: Imeka Tractography Service
lists: International Imaging Genetics Conference
lists: Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.0
lists: Iterative dual-regression with sparse prior
lists: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI
lists: KWScene: MRML-based Atlas and Scene Builder/Reader/Writer
lists: L-Neuron
lists: Laplace Beltrami Filter on QuadEdge Meshes
lists: libSBML
lists: Lightweight Data Pipeline
lists: Longitudinal MS Lesion Imaging Archive
lists: MARS (Multi-Atlas Robust Segmentation)
lists: minc-toolkit
lists: minc-toolkit-testsuite
lists: MISST - Microstructure Imaging Sequence Simulation ToolBox
lists: MRI Neuroanatomy Labeling Services
lists: MRIcroS
lists: Multivariate General Linear Models (MGLM) on Riemannian Manifolds
lists: Neoseg
lists: NeoSegPipeline
lists: NeuriteTracer
lists: NeuroElf
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lists: NIH Pediatric MRI Data Repository
lists: NIH-CIDI Lung Segmentation Tool
lists: NiiStat
lists: Northwestern University Schizophrenia Data and Software Tool (NUSDAST)
lists: Notion ResearchPACS
lists: NTU-DSI-122: a DSI template in ICBM-152 space
lists: OpenViBE
lists: OpenWalnut
lists: Orientation Distribution Function in Constant Solid Angle (CSA-ODF)
lists: Parkinsons Disease Discovery Database
lists: Prediction and Diagnosis for Depression and Schizophrenia
lists: Preprocessed Connectomes Project
lists: Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data
lists: Ruby NIfTI
lists: SCORE
lists: SFMProject
lists: ShapePopulationViewer
lists: Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations
lists: SPIKECOR: fMRI tool for automated correction of head motion spikes
lists: Spinal Cord Toolbox
lists: Stark Cross-Sectional Aging
lists: Brain Coactivation Map
lists: Multiscale Object Orientation Simulation Environment
lists: Striatal Subregional VOImap
lists: Topographica
lists: Turbo-BrainVoyager
lists: CRL Unbiased and Deformable Spatiotemporal Atlas of the Fetal Brain
lists: UNC-Wisconsin Neurodevelopment Rhesus MRI Database
lists: Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX)
lists: VMTK in 3D Slicer
lists: Wisconsin Cortical Thickness Analysis (CTA) Toolbox
lists: XFSL: An FSL toolbox
lists: XNBC
lists: YMDTI: Diffusion Tensor Images of Healthy Young Males
lists: BraTumIA (Brain Tumor Image Analysis)
lists: CAWorks
lists: Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND)
lists: Graph Theory GLM (GTG) MATLAB Toolbox
lists: Functional Mixed Processes Models
lists: Papaya
lists: Parallel Stochastic Ion Channel Simulator
lists: Advanced Connectivity Analysis (ACA)
lists: International Imaging Genetics Conference
lists: Analyze Software System
lists: Optseq
lists: ENIGMA-DTI Pipeline
lists: Umea Brain Arteries
lists: MetaSearch
lists: BrainBox
lists: BluePyOpt
lists: MultiXplore
lists: Automatic Tractography-based Parcellation Pipeline
lists: Epilepsy T1 and Hippocampal Segmentation Datasets
lists: Mixed Effect Model of Genetic-Set and Environment Interaction
lists: masked ICA (mICA) Toolbox
lists: Altered States Database
lists: User Friendly Functional Connectivity - UF²C
lists: Intra- and inter-scanner reliability of RS-fMRI BOLD and ASL with eyes closed vs. eyes open
lists: Region to Region
lists: Waxholm Space Atlas of the Sprague Dawley Rat Brain
lists: Nutil - Neuroimaging utilities
lists: MeshView
lists: vini: A viewer for fMRI data
lists: brainGraph
lists: Diffusion Toolkit
lists: Neurodocker
lists: HeuDiConv: a heuristic-centric DICOM converter
lists: Knowing what you know (kwyk) - Bayesian Brain Parcellation
lists: Rhesus Macaque Brain Atlases
lists: MIITRA atlas
lists: MonkeyCBP
lists: ReproNim/containers
lists: ReproMan
lists: ABCD-ReproNim Course
lists: Ventricular Morphometry Analysis System
lists: ONPRC18 Multimodal MRI Atlas
lists: volBrain
lists: Waxholm Space
is affiliated with: Manual Align RTS2000
is related to: University of California; San Diego;National Center for Microscopy and Imaging Research - NCMIR
has parent organization: Harvard University; Cambridge; United States
has parent organization: NIH Blueprint for Neuroscience Research
is parent organization of: Licensing issues in software and data
is parent organization of: NITRC Enhanced Services
is parent organization of: Resource Ontology Discussion Group
is parent organization of: NITRC-IR
is parent organization of: 1000 Functional Connectomes Project
is parent organization of: NYU CSC TestRetest
is parent organization of: NITRC Books
is parent organization of: NITRC Community
is parent organization of: ABIDE
is parent organization of: COBRE
is parent organization of: Group Sparse Canonical Correlation Analysis
is parent organization of: Challenge Competitions Collection
is parent organization of: 1000 Functional Connectomes Project
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NIH Blueprint for Neuroscience Research ;
NIMH ;
NIDA ;
NIBIB U24 EB023398;
NINDS R44 NS074540 |
PMID:26044860
PMID:18999128 |
Free, Freely available |
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nif-0000-00202, r3d100010784, r3d100011515 |
https://doi.org/10.17616/R3W32N |
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SCR_003430 |
Neuroimaging Informatics Tools and Resources Clearinghouse, , NeuroImaging Tools and Resources Collaboratory, Neuroimaging Informatics Tools Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools and Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools Resources Clearinghouse |
2026-08-03 09:32:07 |
338 |
CoSMoMVPA
Resource Report
Resource Website
100+ mentions
|
CoSMoMVPA (RRID:SCR_014519)
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software toolkit, software application, data processing software, data analysis software, software resource
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A multi-modal multivariate pattern analysis of neuroimaging data in Matlab / GNU Octave. Links to examples, exercises, and information for developers are available on the main page.
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functional magnetic resonance imaging, magnetoencephalography, multivariate pattern analysis, neuroscience, weill cornell, software toolkit, data analysis software
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is related to: PyMVPA
works with: MATLAB
works with: GNU Octave
works with: FieldTrip
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Autonomous Province of Trento ;
Call Grandi Progetti 2012 ;
project Characterizing and improving brain mechanisms of attention - ATTEND |
DOI:10.1101/047118 |
Available for download |
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https://github.com/CoSMoMVPA/CoSMoMVPA |
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SCR_014519 |
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2026-08-03 09:35:46 |
179 |
Human Connectome Coordination Facility
Resource Report
Resource Website
500+ mentions
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Human Connectome Coordination Facility (RRID:SCR_008749)
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WU-Minn HCP
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image repository, service resource, data repository, storage service resource
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Consortium to comprehensively map long-distance brain connections and their variability. It is acquiring data and developing analysis pipelines for several modalities of neuroimaging data plus behavioral and genetic data from healthy adults.
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brain, connectivity, adult human, mri, resting-state fmri, functional mri assay, neuroimaging, surface rendering, time domain analysis, tractography, xnat pipeline
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is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: FSL
is related to: Brain Connectivity Toolbox
is related to: FieldTrip
is related to: BALSA
has parent organization: Washington University in St. Louis; Missouri; USA
has parent organization: NIH Human Connectome Project
has parent organization: University of Minnesota Twin Cities; Minnesota; USA
is parent organization of: WU-Minn HCP 500 Subjects MR and MEG Release
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healthy, twin |
NIMH MH091657;
NIH Blueprint for Neuroscience Research |
PMID:23684880
PMID:23702419
PMID:23668970
PMID:23702415
PMID:23702418
PMID:23707591
PMID:23702417
PMID:23684877 |
Free, Freely available |
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nlx_143922 |
http://www.nitrc.org/projects/hcp_wuminn, http://www.humanconnectome.org/documentation/S500/ |
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SCR_008749 |
HCP WU-Minn Consortium, WU-Minn: Human Connectome Project, HUMAN CONNECTOME PROJECT WU-Minn Consortium, WU-Minn Consortium: Human Connectome Project, WU-Minn Consortium: HCP |
2026-08-03 09:33:55 |
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