Searching the RRID Resource Information Network
Are you sure you want to leave this community? Leaving the community will revoke any permissions you have been granted in this community.
SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
ModelDB Resource Report Resource Website 100+ mentions |
ModelDB (RRID:SCR_007271) | ModelDB | data or information resource, data repository, database, service resource, storage service resource | Curated database of published models so that they can be openly accessed, downloaded, and tested to support computational neuroscience. Provides accessible location for storing and efficiently retrieving computational neuroscience models.Coupled with NeuronDB. Models can be coded in any language for any environment. Model code can be viewed before downloading and browsers can be set to auto-launch the models. The model source code has to be available from publicly accessible online repository or WWW site. Original source code is used to generate simulation results from which authors derived their published insights and conclusions. | repository, collection, network, neuron, computational, neuroscience, model, simulation, neural, data |
is used by: NIF Data Federation lists: ModelRun is listed by: 3DVC is listed by: Biositemaps is listed by: Integrated Models is related to: SimToolDB is related to: NeuronDB is related to: NeuronVisio is related to: Integrated Manually Extracted Annotation is related to: Allen Institute for Brain Science has parent organization: Yale University; Connecticut; USA works with: MicrocircuitDB |
Human Brain Project ; NCI ; NIDCD P01 DC004732; NIDCD R01 DC009977; NIMH ; NINDS |
PMID:15218350 PMID:15055399 PMID:8930855 |
Free, Freely available, Acknowledgement requested | nif-0000-00004, r3d100011330 | https://doi.org/10.17616/R3P61F | SCR_007271 | SciCrunch Registry | Model_DB, Model Database, Model DB, Model-DB | 2026-10-17 01:26:49 | 312 | ||||
|
Caenorhabditis Genetics Center Resource Report Resource Website 1000+ mentions |
Caenorhabditis Genetics Center (RRID:SCR_007341) | CGC | biomaterial supply resource, cell repository, material resource, organism supplier | Center that acquires, maintains, and distributes genetic stocks and information about stocks of the small free-living nematode Caenorhabditis elegans for use by investigators initiating or continuing research on this genetic model organism. A searchable strain database, general information about C. elegans, and links to key Web sites of use to scientists, including WormBase, WormAtlas, and WormBook are available. | non-human animal, caenorhabditis elegans, chromosome, database, model, mutant, nematode, nomenclature, model organism, protein, transgenic, web accessible database, genetic stock, germplasm, genotype, FASEB list |
is used by: NIF Data Federation is listed by: One Mind Biospecimen Bank Listing is related to: C. elegans Gene Knockout Consortium is related to: Expression Patterns for C. elegans promoter GFP fusions has parent organization: University of Minnesota Twin Cities; Minnesota; USA |
NIH OD010440 | nif-0000-00240 | https://orip.nih.gov/comparative-medicine/programs/invertebrate-models, http://www.cbs.umn.edu/research/resources/cgc | http://biosci.umn.edu/CGC/, http://www.cgc.cbs.umn.edu | SCR_007341 | SciCrunch Registry | 2026-10-17 01:26:50 | 3907 | ||||||
|
RanchoBiosciences Resource Report Resource Website |
RanchoBiosciences (RRID:SCR_007252) | Rancho BioSciences | commercial organization | Company offers Data Curation, Data Governance and Models, Bioinformatics Analysis, Workflows and Pipelines, Knowledge Mining, Target Profiles, Building Databases with content, Business Analyst services to clients in Pharmaceutical and Biotech companies, Foundations, Government and Hospitals. | Data Curation, Data Governance and Models, Bioinformatics Analysis, Workflows and Pipelines, Knowledge Mining, Target Profiles, Building Databases with content, Business Analyst services |
uses: tranSMART uses: Gene Expression Omnibus is used by: NIF Data Federation is used by: Integrated Data Annotation is used by: Integrated Datasets is parent organization of: GSE4922 is parent organization of: GSE1456 is parent organization of: GSE4271 is parent organization of: GSE4698 is parent organization of: GSE20194 is parent organization of: GSE27831 is parent organization of: GSE8650 is parent organization of: GSE13732 is parent organization of: GSE24060 is parent organization of: GSE17755 is parent organization of: GSE13168 |
nlx_157710 | http://ranchobiosciences.com/free-downloads/ | SCR_007252 | SciCrunch Registry | 2026-10-17 01:26:55 | 0 | ||||||||
|
Olfactory Receptor DataBase Resource Report Resource Website 1+ mentions |
Olfactory Receptor DataBase (RRID:SCR_007830) | ORDB | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | Database of vertebrate olfactory receptors genes and proteins. It supports sequencing and analysis of these receptors by providing a comprehensive archive with search tools for this expanding family. The database also incorporates a broad range of chemosensory genes and proteins, including the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfaction receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), and fungal pheromone receptors (FPRs). ORDB currently houses chemosensory receptors for more than 50 organisms. ORDB contains public and private sections which provide tools for investigators to analyze the functions of these very large gene families of G protein-coupled receptors. It also provides links to a local cluster of databases of related information in SenseLab, and to other relevant databases worldwide. The database aims to house all of the known olfactory receptor and chemoreceptor sequences in both nucleotide and amino acid form and serves four main purposes: * It is a repository of olfactory receptor sequences. * It provides tools for sequence analysis. * It supports similarity searches (screens) which reduces duplicate work. * It provides links to other types of receptor information, e.g. 3D models. The database is accessible to two classes of users: * General public www users have full access to all the public sequences, models and resources in the database. * Source laboratories are the laboratories that clone olfactory receptors and submit sequences in the private or public database. They can search any sequence they deposited to the database against any private or public sequence in the database. This user level is suited for laboratories that are actively cloning olfactory receptors. | fungal, pheromone receptor, gene, chemosensory, chemosensory receptor, g protein-coupled receptor, olfaction receptor, protein, receptor, taste papilla receptor, vomeronasal organ receptor, olfactory receptor, nucleotide, amino acid, chemoreceptor sequence, olfactory receptor sequence, chemoreceptor, sequence |
is used by: NIF Data Federation is listed by: 3DVC is related to: Odor Molecules DataBase is related to: Integrated Manually Extracted Annotation has parent organization: Yale School of Medicine; Connecticut; USA |
Aging | Human Brain Project ; NIMH ; NIA ; NICD ; NINDS ; Multidisciplinary University Research Initiative ; National Aeronautics and Space Administration ; NIDCD RO1 DC 009977; NIDCD P01 DC 04732; NLM G08 LM05583 |
PMID:11752336 PMID:9847223 PMID:9218144 |
Public, Private, Acknowledgement requested, The community can contribute to this resource | nif-0000-03213 | SCR_007830 | SciCrunch Registry | Olfactory Receptors Database | 2026-10-17 01:26:56 | 4 | ||||
|
CellML Model Repository Resource Report Resource Website 1+ mentions |
CellML Model Repository (RRID:SCR_008113) | CellML Repository | data repository, service resource, software repository, software resource, storage service resource | Repository of biological models created using CellML, a free, open-source, eXtensible markup language based standard for defining mathematical models of cellular function. Models may be browsed by category, which include: Calcium Dynamics, Cardiovascular Circulation, Cell Cycle, Cell Migration, Circadian Rhythms, Electrophysiology, Endocrine, Excitation-Contraction Coupling, Gene Regulation, Hepatology, Immunology, Ion Transport, Mechanical Constitutive Laws, Metabolism, Myofilament Mechanics, Neurobiology, pH Regulation, PKPD, Signal Transduction, Synthetic Biology. The community can contribute their models to this resource. | cell function, cell model, model, cell, calcium dynamics, cardiovascularc circulation, cell cycle, cell migration, circadian rhythm, electrophysiology, endocrine, excitation-contraction coupling, gene regulation, hepatology, immunology, ion transport, mechanical constitutive law, metabolism, myofilament mechanics, neurobiology, ph regulation, pkpd, signal transduction, synthetic biology, image, exposure |
is used by: NIF Data Federation is listed by: 3DVC is listed by: Integrated Models is related to: Integrated Manually Extracted Annotation has parent organization: CellML |
Wellcome Trust ; Royal Society of New Zealand ; Maurice Wilkins Centre for Molecular Biodiscovery |
PMID:21216774 PMID:18658182 PMID:17947072 PMID:19162720 PMID:19380315 |
The community can contribute to this resource | nif-0000-20828 | SCR_008113 | SciCrunch Registry | 2026-10-17 01:26:59 | 6 | ||||||
|
Biocompare Resource Report Resource Website 100+ mentions |
Biocompare (RRID:SCR_008336) | commercial organization | A web catalog of over 1M antibodies from hundreds of different companies and other research supplies. Biocompare has made large quantities of data available to the antibodyregistry.org facilitating tagging important research reagents to literature and continues to work with the antibodyregistry. |
is used by: NIF Data Federation is parent organization of: Biocompare Antibody Search Tool |
nif-0000-24919 | SCR_008336 | SciCrunch Registry | Compare netowrks | 2026-10-17 01:27:02 | 204 | ||||||||||
|
IXI dataset Resource Report Resource Website 10+ mentions |
IXI dataset (RRID:SCR_005839) | IXI dataset | data or information resource, data set, portal, project portal | Data set of nearly 600 MR images from normal, healthy subjects, along with demographic characteristics, collected as part of the Information eXtraction from Images (IXI) project available for download. Tar files containing T1, T2, PD, MRA and DTI (15 directions) scans from these subjects are available. The data has been collected at three different hospitals in London: * Hammersmith Hospital using a Philips 3T system * Guy''s Hospital using a Philips 1.5T system * Institute of Psychiatry using a GE 1.5T system | neuroimaging, structural mri assay, magnetic resonance angiography, nifti, t1, t2, pd, dti, demographic, normal, healthy, adult, mri, brain, image collection |
is used by: NIF Data Federation has parent organization: Imperial College London; London; United Kingdom |
Normal, Healthy | EPSRC GR/S21533/02 | Acknowledgement requested | nlx_149360 | http://brain-development.org/ | SCR_005839 | SciCrunch Registry | Information eXtraction from Images dataset | 2026-10-17 01:26:21 | 38 | ||||
|
Human Phenotype Ontology Resource Report Resource Website 50+ mentions |
Human Phenotype Ontology (RRID:SCR_006016) | HPO, HP | controlled vocabulary, data or information resource, ontology | Provides standardized vocabulary of phenotypic abnormalities encountered in human disease. Structured and controlled vocabulary for phenotypic features encountered in human hereditary and other disease. HPO is being developed in collaboration with members of OBO Foundry (Open Biological and Biomedical Ontologies), and logical definitions for HPO terms are being developed using PATO and a number of other ontologies including FMA, GO, ChEBI, and MPATH. | phenotype, genetics, disease, phenomizer, obo, clinical, phenome, pathological, organismal, FASEB list |
uses: OMIM uses: Phenexplorer is used by: DisGeNET is used by: HmtPhenome is used by: MONARCH Initiative is used by: NIF Data Federation is listed by: BioPortal is listed by: OBO is related to: Phenexplorer is related to: Phenomizer is related to: PhenoTips is related to: Neurocarta is related to: GWASdb is related to: Phenomizer has parent organization: Charite - Universitatsmedizin Berlin; Berlin; Germany works with: Human Mouse Disease Connection |
Monogenic disease, Hereditary disease | PMID:20412080 | Free, Freely available | SCR_006219, nlx_151406, nlx_151835 | http://purl.bioontology.org/ontology/HP, http://compbio.charite.de/svn/hpo/trunk/src/ontology/human-phenotype-ontology.obo | SCR_006016 | SciCrunch Registry | Human Phenotype Ontology (HPO), Human Phenotype Ontology | 2026-10-17 01:26:30 | 76 | ||||
|
Psychoactive Drug Screening Program Ki Database Resource Report Resource Website 10+ mentions |
Psychoactive Drug Screening Program Ki Database (RRID:SCR_003281) | Ki DB | data or information resource, data repository, database, service resource, storage service resource | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 5, 2023. Database of information on the abilities of drugs to interact with an expanding number of molecular targets. It serves as a data warehouse for published and internally-derived Ki, or affinity, values for a large number of drugs and drug candidates at an expanding number of G-protein coupled receptors, ion channels, transporters and enzymes. The query interface is designed to let you search by any field, or combination of them to refine your search criteria. The flexible user interface also provides for customized data mining. The database is regularly updated. If you know of Ki data you would like to add, you can select Direct Ki Entry at the grey panel. If you would like, however, your own data (published or not) added, Send them a Reference at the grey panel, or send an email to Dr. Bryan Roth or Estela Lopez. Most common targets: 5-HT2A, DOPAMINE D1, DOPAMINE D2, 5-HT2C, 5-HT1A, Cholinergic, muscarinic M1, 5-HT Transporter, HISTAMINE H1, 5-HT2B, OPIOID Mu, 5-HT6, adrenergic Beta2, 5-HT7, OPIATE Delta, adrenergic Alpha1A, OPIOID Kappa, 5-HT3, m-AChR, adrenergic Beta1, adrenergic Alpha2A, 5-HT1, Acetylcholinesterase, AChE, Thromboxane A2, n-AChR, Opiate non-selective, CANNABINOID CB1, HERG, Dopamine, cocaine site, adrenergic Alpha2C, M3, Norepinephrine Uptake, Monoamine Oxidase A, Monoamine Oxidase B, 5-HT4, adrenergic Alpha1, 5-HT1E, B1 BRADYKININ, 5-HT2, 5-HT2C-INI, DOPAMINE D4, ANGIOTENSIN AT1, Neurokinin NK1, HISTAMINE H3, Sigma-1, VIP, Dopamine2-like, metabotropic glutamate 5, 5-HT2c VGI, Carbonic Anhydrase Isozymes, CA I, DOPAMINE D2 Long, adrenergic Alpha2, adrenergic Alpha2B, adrenergic Alpha2D, GABA A alpha1, CANNABINOID CB2, adrenergic Alpha1B, 5-HT5a, Melatonin, HISTAMINE H4, NMDA, 5-HT4a, Glucocorticoid, Interleukin 1-beta, Sodium Channel, Benzodiazepine central, Cholinergic, muscarinic M5, Neuropeptide Y1, GABA A alpha5, Galanin R2, Neurokinin NK3, 5-HT1B, M2, DOPAMINE D3, Angiotensin, Dopamine1-like, Neurokinin NK2, adrenergic Beta, Dopamine D1 high, Dopamine D1A, MAP kinase, ADENOSINE A2a, 5-HT7b, Nitrogen oxide synthase - neuronal, Sigma-2, CDK2, Neurotensin 2, DOPAMINE D2 Short, Multidrug Resistance Transporter MDR 1, GABA A Benzodiazepine, VEGF-R2, OPIATE Mu 2, Angiotensin II AT1, HISTAMINE H2, Angiotensin-converting enzyme, ACE, Sigma, beta-amyloid, ADENOSINE, ADENOSINE A2B, Adrenaline, Neurotensin 1 | gpcr, ki, 5-ht transporter, 5-ht2a, dopamine d2, dopamine d1, 5-ht1a, m1, dopamine transporter, opiate mu, histamine h1, adrenergic alpha1, 5-ht7, m2, 5-ht2c, cannabinoid cb1, adrenergic alpha2a, net, 5-ht3, 5-ht2b, adrenergic alpha1a, adrenergic beta1 |
is used by: NIF Data Federation has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
NIMH ; Heffter Research Institute |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-01866 | SCR_003281 | SciCrunch Registry | Ki Database, PDSP Ki Database | 2026-10-17 01:25:28 | 19 | ||||||
|
NeuroImaging Tools and Resources Collaboratory (NITRC) Resource Report Resource Website 100+ mentions |
NeuroImaging Tools and Resources Collaboratory (NITRC) (RRID:SCR_003430) | NITRC | community building portal, data or information resource, data repository, portal, service resource, software repository, software resource, storage service resource | Software repository for comparing structural (MRI) and functional neuroimaging (fMRI, PET, EEG, MEG) software tools and resources. NITRC collects and points to standardized information about structural or functional neuroimaging tool or resource. | collaboration, information, resource, structural, functional, neuroimaging, MRI, fMRI, EEG, MEG, PET |
is used by: NIF Data Federation is used by: Consortium for Reliability and Reproducibility is used by: DataLad is recommended by: National Library of Medicine lists: Dipy lists: 3DMeshMetric lists: MPScope lists: VectorValuedHistogramNormalizer lists: Faceted Search Based Ontology Visualizer lists: Morphometry BIRN lists: Colin 3T/7T High-resolution Atlas lists: CMFreg lists: BrainFX lists: dinifti lists: Center for Computational Biology at UCLA lists: Convert MNI coordinates to or from XYZ lists: Licensing issues in software and data lists: Local Binary Pattern Analysis Tools for MR Brain Images lists: MIView lists: uManager lists: Penn Hippocampus Atlas lists: RapidArt lists: Scribe lists: ShapeWorks lists: Vervet Probabilistic Atlas lists: Talairach Daemon lists: ADHD-200 Preprocessed Data lists: LORIS - Longitudinal Online Research and Imaging System lists: NVM lists: Maps4Mipav (Exploratory JIST) lists: Autism Tissue Program lists: MEG Tools lists: PyNIfTI lists: LONI Visualization Tool lists: Mind Research Network - COINS lists: OpenElectrophy lists: CIFTI Connectivity File Format lists: 3DSlicerLupusLesionModule lists: BrainNetworkConstructionAnalysisPlatform lists: COMPARE lists: Data Format Tools lists: GesTr lists: I/OWA lists: MINC Example files lists: cbiNifti: Matlab/Octave Nifti library lists: BRAINSCut lists: C-PAC lists: Connectir lists: DicomBrowser lists: Hitachi Optical Topography System lists: Net Station API lists: imcalc: SPM batch image calculator lists: BRAINSCortex lists: Insight Segmentation and Registration Toolkit lists: LONI Debabeler lists: LONI Pipeline Processing Environment lists: NiLearn lists: MRI Studio lists: BraVa lists: Brede Wiki lists: Center for Functional Neuroimaging Technologies lists: Philips Users Community lists: medInria lists: Beijing: Eyes Open Eyes Closed Study lists: vIST/e lists: Camino lists: Diffusion Tensor Imaging ToolKit lists: TORTOISE lists: NIDAG: Neuroimaging Data Access Group lists: MRI CVPR lists: vuTools lists: Medical Image Processing and Visualization in Virtual Environments lists: Brainstorm lists: Atlas3D lists: FMRISTAT - A general statistical analysis for fMRI data lists: FreeSurfer lists: Rosetta Bit lists: Laboratory of Neuro Imaging lists: Group ICA of fMRI Toolbox lists: Hierarchical Attribute Matching Mechanism for Elastic Registration lists: Internet Brain Segmentation Repository lists: Neural ElectroMagnetic Ontologies (NEMO) Project lists: Wavelet-based Image Fusion lists: ITK-SNAP lists: Internet Brain Volume Database lists: Statistical non-Parametric Mapping lists: VoxBo lists: NITRC Computational Environment lists: Spatially Constrained Parcellation lists: Cluster reporter lists: Cluster Extent Correction lists: 4D Atlases Construction lists: CIGAL lists: CleanLine lists: Computational Morphometry Toolkit lists: Cognitive Paradigm Ontology lists: aBEAT lists: MR Connectome Automated Pipeline lists: International Neuroinformatics Coordinating Facility lists: Functional Regression Analysis of DTI Tract Statistics lists: MCIC lists: MGDM: Multi Geometric Deformable Model lists: MIAS Registration Toolkit lists: Medical Image Visualization and Analysis lists: Microstructural correlation toolbox lists: MisterI lists: MriWatcher lists: Multiple Correlation Function Tool lists: NITRC Community Conferences Workshops and Meetings lists: BRAINSFit lists: INCF Software Center lists: BrainVision Analyzer lists: COGNISION lists: DPARSF lists: GLIRT lists: MINC lists: Group Level Imputation of Statistic Maps lists: MRIcron lists: Inter-Group Registration Toolbox lists: MCML and CONV lists: MEGSIM lists: MIRIAD lists: MRI Defacer lists: MS lesion segmentation challenge 2008 lists: Measure Projection Toolbox lists: Mindboggle lists: Mindboggle-101 atlases lists: ModelGUI lists: Multi-Modal MRI Reproducibility Resource lists: MultiTracer lists: Multicomponent T2 estimation with stimulated echo correction lists: NCANDA: Data Integration Component lists: NFT lists: Net Station EEG Software lists: Network Based Statistic Toolbox lists: NeuroScope lists: Numerical Fibre Generator lists: PSTNet: MRI Simulator lists: cortex lists: iBEAT lists: M3 lists: Group ICA Of EEG Toolbox lists: 4D-PARSeR Pathological Anatomy Regression via Segmentation and Registration lists: Automatic Segmentation Tool Adapter lists: DTI-TEMPLATE-RHESUS-MACAQUES lists: LONI Provenance Editor lists: MNI N3 lists: MRI Digital Projection System lists: NIDB - Neuroinformatics Database lists: NIPY lists: NIRAL Utilities lists: NIRx NIRS Neuroimaging lists: NIRx2nirs: A NIRx to .nirs data converter lists: NITRC Enhanced Services lists: NITRC GForge Extensions lists: NPTK lists: NeuroImaging Analysis Kit (NIAK) lists: NiBabel lists: NiftyRec lists: Nipype lists: Nirfast lists: Nitime lists: Non-Rigid Image Registration Evaluation Project lists: Normative Independent Component Analysis lists: OEI: fMRI compatible olfactometer lists: ORS Visual SI lists: OpenMEEG lists: PANDA lists: PESTICA fMRI Physio Detection/Correction lists: PHYCAA+: adaptive physiological noise correction for BOLD fMRI lists: ParaView lists: Parkinson’s Disease Biomarkers Program Data Management Resource (PDBP DMR) lists: Presentation lists: PySurfer lists: Pythagorean Displacement and Motion Regressors lists: Quantitative Diffusion Tools lists: R-package for adaptive DWI analysis lists: R-package for adaptive fMRI analysis lists: REX lists: RFT FDR lists: ROBEX lists: RT Image lists: Resource Ontology Discussion Group lists: Rodent Brain Extraction Tool lists: Rodent Cortical Thickness Analysis lists: S-rep Fitting Statistics and Segmentation lists: SCIRun lists: SCRalyze lists: SOCK lists: SPHARM-MAT lists: SPHARM-PDM Toolbox lists: SRI24 Atlas: Normal Adult Brain Anatomy lists: Seg3D lists: ShapeComplexAtlas lists: Signed Differential Mapping lists: Sleuth lists: Slice:Drop lists: Slicer3 Example Modules lists: Source Information Flow Toolbox lists: Spanish Resting State Network lists: Spatial Analysis 3D lists: Stereoscopic Atlas of Intrinsic Brain Networks lists: UNC Infant 0-1-2 Atlases lists: UNC Primate Brain Atlas lists: XCEDE Schema lists: peak nii lists: pydicom lists: pyxnat lists: scikit-learn lists: shapeAnalysisMANCOVA - SPHARM tools lists: VMTK in 3D Slicer lists: 3D Interactive Chemical Shift Imaging lists: BRAINSSurfaceStats lists: Brain lesion segmentation tool using SVM lists: Diffusion Tractography with Kalman Filter lists: Fast Nonlocal Means for MRI denoising lists: Monte Carlo Simulation Software: tMCimg lists: Web Interfaces for Multiscale Images lists: STAPLE lists: Segmentation Validation Engine lists: Spatial Statistical Parametric Mapping lists: SpineSegmentation module for 3DSlicer lists: Stochastic Tractography System lists: Subject Library lists: TAPIR lists: TARQUIN lists: Template Image Processing Library lists: TetraMetrix lists: TractoR: Tractography with R lists: Triangle BioSystems lists: TumorSim lists: TurtleSeg lists: UNC Human Brain Atlas lists: VR Worlds 2 lists: Vaa3D lists: ValMap: simple statistical mapping tool lists: WFU Biological Parametric Mapping Toolbox lists: WFU Pipeline lists: Working Memory Trainer lists: vis: SPM Visualized Statistics toolbox lists: Synchronized Histological Image Viewing Architecture lists: LONI ShapeViewer lists: LONI ShapeTools lists: FFT Library lists: Automated recognition of brain region mentions in neuroscience literature. lists: NUTMEG lists: Cognitive Atlas lists: Mouse BIRN Atlasing Toolkit lists: Temporal-Lobe: Hippocampal - Parahippocampal Neuroanatomy of the Rat lists: FSL lists: LEAD-DBS lists: Brainscape lists: EONS lists: BioImage Suite lists: ADNI - Alzheimer's Disease Neuroimaging Initiative lists: MindSeer lists: XNAT - The Extensible Neuroimaging Archive Toolkit lists: brainmap.org lists: ImageJ lists: Neuroimaging Informatics Technology Initiative lists: IMOD lists: Statistics Online Computational Resource lists: signalml.org lists: Mouse Biomedical Informatics Research Network lists: NIH MRI Study of Normal Brain Development lists: MGH-USC Human Connectome Project lists: Fusion ICA Toolbox lists: Corpus Callosum Thickness Profile Analysis Pipeline lists: ABIDE lists: Mouse Connectome Project lists: NITRC-IR lists: Open Connectome Project lists: neurodebian lists: NIMH Data Archive lists: ANTS - Advanced Normalization ToolS lists: XNAT Extras lists: TrackVis lists: Brain Connectivity Toolbox lists: FieldTrip lists: LONI Inspector lists: BrainLiner lists: OpenNeuro lists: Biomedical Informatics Research Network lists: McConnell Brain Imaging Center MNI Macaque Atlas lists: SINOMO lists: DONE: Detection of Outlier NEurons lists: Neuro Bureau lists: ADHD-200 Sample lists: 1000 Functional Connectomes Project lists: PubBrain lists: CBRAIN lists: ENIGMA: Enhancing Neuro Imaging Genetics Through Meta-Analysis lists: Bisque lists: 3D Slicer lists: Internet Analysis Tools Registry lists: Neuromorphometrics lists: Analysis of Functional NeuroImages lists: Automated Image Registration lists: BASH4RfMRI lists: MNE software lists: Object-Oriented Development Interface for NMR lists: NYU CSC TestRetest lists: Optseq - fMRI Event Scheduler lists: TOADS-CRUISE Brain Segmentation Tools lists: MouseTracker lists: Hammer And WML Modules for 3D Slicer lists: ABC (Atlas Based Classification) lists: Allen Brain Atlas API lists: Viking Viewer for Connectomics lists: ARCTIC lists: ArtRepair for robust fMRI lists: Automatic Registration Toolbox lists: Artifact Detection Tools lists: Segmentation of Hippocampus Subfields lists: ASL data processing tool box lists: Bioelectromagnetism Matlab Toolbox lists: PyMVPA lists: Human Imaging Database lists: BrainImage Software lists: Brede Toolbox lists: Computerized Anatomical Reconstruction and Editing Toolkit lists: BrainColor: Collaborative Open Labeling Online Resource lists: Registry Builder Data Harmonization and Aggregation Tool lists: PsychoPy lists: NiftySim lists: NiftyReg lists: Neurobiological Image Management System lists: BRAINSTools lists: MeshValmet: Validation Metric for Meshes lists: BrainSuite lists: DW-MRI Random Walk Simulator lists: Web Game for Collaborative Labeling lists: BrainVoyager Brain Tutor lists: POLGUI - Matlab Polhemus Interface lists: BrainVoyager Brain Viewer lists: NeuroPub Visualizer lists: NODDI Matlab Toolbox lists: MITK Diffusion lists: Federal Interagency Traumatic Brain Injury Research Informatics System lists: BrainMaps.org lists: PRoNTo lists: Scalable Brain Atlas lists: NIH Human Connectome Project lists: Mesh-based Monte Carlo (MMC) lists: Matlab Neuroshare Library lists: MRtrix lists: MABMIS: Multi-Atlas Based Multi-Image Segmentation lists: Monte Carlo eXtreme lists: Whole Brain Catalog lists: BCILAB lists: ABSORB: Atlas Building by Self-Organized Registration and Bundling lists: VAMCA lists: SPM lists: Low Resolution Electromagnetic Tomography lists: SurfStat lists: Cambridge Brain Activation lists: CLEAVE lists: CoCoMac lists: fMRI Data Center lists: Function BIRN lists: EEGLAB lists: BrainVISA / Anatomist lists: MIPAV: Medical Image Processing and Visualization lists: NeuroLens lists: WFU PickAtlas lists: Open Access Series of Imaging Studies lists: BioSig: An Imaging Bioinformatics System for Phenotypic Analysis lists: xjView: A Viewing Program For SPM lists: Human Connectome Coordination Facility lists: ASL spm8 lists: Integrated Manually Extracted Annotation lists: JIST: Java Image Science Toolkit lists: Functional Analysis of Diffusion Tensor lists: AHEAD lists: ANTsR lists: 3DBar lists: Cancer Imaging Archive (TCIA) lists: Pediatric Imaging Neurocognition and Genetics lists: Atlasing of the basal ganglia lists: cmrep lists: 3D DTI Atlas of the Rat Brain In Postnatal Day 5 14 and Adulthood lists: AutoSeg lists: BXH/XCEDE Tools lists: Baby Brain Toolkit lists: Best Practices for Software Development lists: Brain Catalogue lists: Draw3D and Meshinator lists: Brain Segmentation Testing Protocol lists: BrainNet Viewer lists: BrainSolution lists: Brainvox lists: C8: Corpus Callosum Computations lists: CAMINO-TRACKVIS lists: CANDI Share: Schizophrenia Bulletin 2008 lists: CBS High-Res Brain Processing Tools lists: CCSeg - Corpus Callosum Segmentation lists: Cerebral Blood Flow Database and Analysis Pipeline lists: Create DWI Atlas lists: DFBIdb lists: DIAMOND lists: DICOM UploadGUI lists: DOTS WM tract segmentation lists: DTI Fiber Tract Statistics lists: DW-MRI registration in FSL lists: DbGaP Cleaner lists: DentalTools lists: Diffusion MRI - In-vivo and Phantom Data lists: Diffusion MRI at DKFZ Heidelberg lists: Diffusion Warp lists: Disease State Prediction lists: EEG human categorization data lists: Epsilon Radial Networks lists: FBIRN Image Processing Scripts lists: FSL extensions lists: False Discovery Rate Weighted lists: Fiber Tracking Tool lists: Fiber-tracking based on Finsler distance lists: FiberViewerLight lists: Finsler tractography module for Slicer lists: Fluid Registration and Atlas Toolkit lists: Framework for Open Programmatic Access lists: Functional Connectivity Community lists: Functional ROI Atlas lists: Functional and Structural Neuroimaging Journals Listing lists: GAMBIT lists: GAMMA lists: BRAINSMush lists: GPU based affine registration lists: GRETNA lists: Generalized Covariance Analysis lists: Generalized PPI Toolbox lists: Group Information Guided ICA lists: Groupwise Image Registration Toolbox lists: HD Neuro-Informatics lists: Hitachi2nirs lists: IDeA Lab brain image processing suite lists: INCF Neuroimaging Data Sharing lists: INIA19 Primate Brain Atlas lists: JHU Proj. in Applied Medical Imaging lists: JIST Resources for Algorithm Development lists: BRAINSROIAuto lists: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI lists: Landman NeuroImaging Tools lists: Local Label Learning Segmentation lists: MASI Label Fusion lists: MASIMatlab lists: MATLAB Tutorial on Diffusion Tensor MRI lists: Multi-Echo Independent Component Regression Group-Level Connectivity Dataset lists: Multi-fiber Reconstruction from DW-MRI lists: NITRC Books lists: Network Modification Tool Lite lists: Non-rigid groupwise registration method lists: Rockland Download Link Script lists: Subject Order-Independent Group ICA lists: Task Independent Fluctuations Discussion lists: UNC Human DTI Brain Atlas lists: BRAINSTestData lists: cPPI Toolbox for fMRI lists: fMRI Classification in R lists: fMRI-CPCA lists: fNIRS Data Analysis Environment lists: factory t1 dti lists: BRAINSDemonWarp lists: AMILab lists: ADJUST lists: ALVIN lists: Age Related Atrophy Dataset lists: B0 and eddy current correction for DTI lists: BESA lists: BSMac lists: BVQXtools lists: BioMesh3D lists: BrainBrowser lists: BrainGraph Editor lists: BrainMagix SPM Viewer lists: BrainMask Volume Processing Tool lists: Brainsight lists: Brainwaver lists: CANDI Neuroimaging Access Point lists: CBFBIRN lists: CDF-HC PointSetReg lists: GIMIAS lists: CURRY lists: CalaTK lists: CoCoMac-Paxinos3D viewer lists: INVIZIAN lists: CONN lists: Connectome File Format lists: Connectome Viewer lists: Cytoseg lists: DICCCOL predictor lists: DRAMMS lists: DSI Studio lists: Level-set Segmentation for Slicer3 lists: DTI BrainImageScope lists: DTI-Reg lists: DTIProcess ToolKit lists: DWI/DTI Quality Control Tool: DTIPrep lists: Diffusional Kurtosis Estimator lists: Distributome lists: ImageVis3D lists: E-Prime lists: E-Prime Extensions for fMRI lists: EEGVIS lists: EEProbe lists: EMSE Suite lists: LONI Brain Parser lists: EPILAB lists: ERPLAB lists: FIV lists: FMRIpower lists: Fiber Optic Button Response System lists: Free-D lists: GIFTI lists: GMAC: A Matlab toolbox for spectral Granger causality analysis of fMRI data lists: HAMMER Suite lists: HERMES lists: HI-SPEED Software Packets lists: Homer2 lists: IIT Human Brain Atlas lists: JIP Analysis Toolkit lists: Jim lists: LDDMM lists: LIBEEP lists: LIMO EEG lists: LONI De-identification Debablet lists: Waxholm Space lists: Lipsia lists: Lumina LP- 400 Response System lists: MRI Dataset for Hippocampus Segmentation lists: MaCH-Admix lists: Mach2dat lists: Mag Design and Engineering lists: MagVenture: MagPro Magnetic Stimulator lists: SR Research EyeLink Eye Trackers lists: Mango lists: Manually Labeled MRI Brain Scan Database lists: MarsBaR region of interest toolbox for SPM lists: MazeSuite lists: MoTrak Head Motion Tracking System lists: NCIGT Fast Imaging Library lists: NeuroWeb - NeuroImaging Database lists: Neuroimaging Made Easy Blog lists: Neurophysiological Biomarker Toolbox lists: SVV lists: Slicer3 Module Rician noise filter lists: UNC/Utah NAMIC DTI Fiber Analysis Framework lists: caGWAS lists: eConnectome lists: elastix lists: fMRI Artefact rejection and Sleep Scoring Toolbox lists: MACH lists: fMRI Grocer lists: fNIR Devices lists: fanDTasia Java Applet: DT-MRI Processing lists: g.BSanalyze lists: iTools lists: iView X MRI-LR - Eye Tracking for fMRI lists: map3d lists: NICE-SIGN lists: NIRS-SPM lists: NITRC Community lists: NordicNeuroLab lists: PICSL Multi-Atlas Segmentation Tool lists: Paradigm lists: Pipeline Neuroimaging VirtualEnvironment lists: Pipeline System for Octave and Matlab lists: ProbabilisticBiasCorrection lists: Program for optimal design of blocked fMRI experiments lists: QCQP lists: REST: a toolkit for resting-state fMRI lists: Robust Biological Parametric Mapping lists: SPM SS - fMRI functional localizers lists: Solar Eclipse Imaging Genetics tools lists: VPixx: VIEWPixx /3D lists: resting-state pediatric imaging template lists: DATAPixx lists: GTRACT lists: Wisconsin White Matter Hyperintensities Segmentation Toolbox lists: COBRE lists: AngioCalc Cerebral Aneurysm Calculator lists: USC Multimodal Connectivity Database lists: BRAINSConstellationDetector lists: ASA - Advanced Source Analysis lists: BRAINSTracer lists: EYE-EEG (combined eye-tracking & EEG) lists: BrainVoyager lists: Mean Machine lists: ERP PCA Toolkit lists: LiverSegm lists: GSA-SNP lists: FastICA lists: DTI Atlas Builder lists: Neuroimaging in Python lists: Brain Decoder Toolbox lists: iso2mesh lists: CUDA-SPHERE-FWD-MEEG lists: BrainCSI lists: BrainVisa Morphology extensions lists: VPixx: VIEWPixx lists: VPixx: PROPixx lists: GenGen lists: MACH 1.0 lists: PennCNV lists: SumsDB lists: Integrated Software lists: NeuroLex lists: Parkinson's Progression Markers Initiative lists: NeuroSynth lists: Textpresso lists: ANNOVAR lists: Graphtools lists: Grantees Meeting for NITRC lists: FP-CIT SPECT brain template in MNI space lists: Brain Computer Interface 2000 Software Package lists: BEAST lists: Brian Simulator lists: Connectome Workbench lists: ConnectomeDB lists: DIAN - Dominantly Inherited Alzheimer Network lists: NKI-RS Enhanced Sample lists: EPILEPSIE database lists: GEneral NEural SImulation System: The Neurospaces Project lists: Hippocampome.org lists: Kitware lists: Kymata Atlas lists: L-Measure lists: MDR lists: neuroConstruct lists: Neurolucida lists: NeuroMorpho.Org lists: NEURON lists: NeuronJ: An ImageJ Plugin for Neurite Tracing and Quantification lists: NeuroVault lists: National Institute on Aging Genetics of Alzheimer’s Disease Data Storage Site (NIAGADS) lists: NINDS Repository lists: NKI/Rockland Sample lists: ODIN lists: OBART lists: Open Science Framework lists: PLINK lists: MBF BioScience: Stereo Investigator lists: studyforrest.org lists: Virtual brain lists: TREES toolbox lists: APERTURE lists: 3dsvm lists: 7T Structural MRI scans ATAG lists: Atlases of amygdala and hippocampus for pediatric populations lists: BetA-Series COrrelation lists: bic-mni-models lists: BiofilmQuant lists: Biomag Discussion Group on Yahoo lists: Brain Entropy in space and time (BEst) lists: Brainnetome Atlas Viewer lists: Brainnetome fMRI toolkit lists: BROCCOLI lists: C-MIND Database lists: CARLsim: a GPU-accelerated SNN Simulator lists: Clinical Toolbox for SPM lists: CMIND PY lists: COST lists: dcm2nii lists: DICOMConvert lists: Displacement Field Viewer lists: DTI denoising lists: Efficient Longitudinal Upload of Depression in the Elderly (ELUDE) lists: Efficient Permutation Testing lists: DTI-TK lists: ERPwavelab lists: ExPosition Packages lists: Fast T2 relaxation data analysis with stimulated echo correction and non-local spatial regularisation lists: Forward: Accurate finite element electromagnetic head models lists: freesurfR lists: Functional Connectivity Analysis Tool for near-infrared spectroscopy data lists: GazeReader lists: gCCA lists: Generation R Pediatric MRI Resources lists: GIMME lists: GLMdenoise: a fast, automated technique for denoising task-based fMRI data lists: GraphVar: A toolbox for comprehensive graph analyses of functional brain connectivity lists: HAMMER: Deformable Registration lists: HBM Hackathon lists: HDBIG lists: High-quality diffusion-weighted imaging of Parkinsons disease lists: MGA - Multimodal Glioma Analysis lists: Image Synthesis Tools lists: Imeka Tractography Service lists: International Imaging Genetics Conference lists: Intrinsic Unscented Kalman Filter (IUKF) Tractography Software v1.0 lists: Iterative dual-regression with sparse prior lists: Joint Anisotropic LMMSE Filter for Stationary Rician noise removal in DWI lists: KWScene: MRML-based Atlas and Scene Builder/Reader/Writer lists: L-Neuron lists: Laplace Beltrami Filter on QuadEdge Meshes lists: libSBML lists: Lightweight Data Pipeline lists: Longitudinal MS Lesion Imaging Archive lists: MARS (Multi-Atlas Robust Segmentation) lists: minc-toolkit lists: minc-toolkit-testsuite lists: MISST - Microstructure Imaging Sequence Simulation ToolBox lists: MRI Neuroanatomy Labeling Services lists: MRIcroS lists: Multivariate General Linear Models (MGLM) on Riemannian Manifolds lists: Neoseg lists: NeoSegPipeline lists: NeuriteTracer lists: NeuroElf lists: Neuron-C lists: NIH Pediatric MRI Data Repository lists: NIH-CIDI Lung Segmentation Tool lists: NiiStat lists: Northwestern University Schizophrenia Data and Software Tool (NUSDAST) lists: Notion ResearchPACS lists: NTU-DSI-122: a DSI template in ICBM-152 space lists: OpenViBE lists: OpenWalnut lists: Orientation Distribution Function in Constant Solid Angle (CSA-ODF) lists: Parkinsons Disease Discovery Database lists: Prediction and Diagnosis for Depression and Schizophrenia lists: Preprocessed Connectomes Project lists: Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data lists: Ruby NIfTI lists: SCORE lists: SFMProject lists: ShapePopulationViewer lists: Simulated DW-MRI Brain Data Sets for Quantitative Evaluation of Estimated Fiber Orientations lists: SPIKECOR: fMRI tool for automated correction of head motion spikes lists: Spinal Cord Toolbox lists: Stark Cross-Sectional Aging lists: Brain Coactivation Map lists: Multiscale Object Orientation Simulation Environment lists: Striatal Subregional VOImap lists: Topographica lists: Turbo-BrainVoyager lists: CRL Unbiased and Deformable Spatiotemporal Atlas of the Fetal Brain lists: UNC-Wisconsin Neurodevelopment Rhesus MRI Database lists: Virtual Electrode Recording Tool for EXtracellular potentials (VERTEX) lists: VMTK in 3D Slicer lists: Wisconsin Cortical Thickness Analysis (CTA) Toolbox lists: XFSL: An FSL toolbox lists: XNBC lists: YMDTI: Diffusion Tensor Images of Healthy Young Males lists: BraTumIA (Brain Tumor Image Analysis) lists: CAWorks lists: Functional Real-time Interactive Endogenous Neuromodulation and Decoding (FRIEND) lists: Graph Theory GLM (GTG) MATLAB Toolbox lists: Functional Mixed Processes Models lists: Papaya lists: Parallel Stochastic Ion Channel Simulator lists: Advanced Connectivity Analysis (ACA) lists: International Imaging Genetics Conference lists: Analyze Software System lists: Optseq lists: ENIGMA-DTI Pipeline lists: Umea Brain Arteries lists: MetaSearch lists: BrainBox lists: BluePyOpt lists: MultiXplore lists: Automatic Tractography-based Parcellation Pipeline lists: Epilepsy T1 and Hippocampal Segmentation Datasets lists: Mixed Effect Model of Genetic-Set and Environment Interaction lists: masked ICA (mICA) Toolbox lists: Altered States Database lists: User Friendly Functional Connectivity - UF²C lists: Intra- and inter-scanner reliability of RS-fMRI BOLD and ASL with eyes closed vs. eyes open lists: Region to Region lists: Waxholm Space Atlas of the Sprague Dawley Rat Brain lists: Nutil - Neuroimaging utilities lists: MeshView lists: vini: A viewer for fMRI data lists: brainGraph lists: Diffusion Toolkit lists: Neurodocker lists: HeuDiConv: a heuristic-centric DICOM converter lists: Knowing what you know (kwyk) - Bayesian Brain Parcellation lists: Rhesus Macaque Brain Atlases lists: MIITRA atlas lists: MonkeyCBP lists: ReproNim/containers lists: ReproMan lists: ABCD-ReproNim Course lists: Ventricular Morphometry Analysis System lists: ONPRC18 Multimodal MRI Atlas lists: volBrain lists: Waxholm Space is affiliated with: Manual Align RTS2000 is related to: University of California; San Diego;National Center for Microscopy and Imaging Research - NCMIR has parent organization: Harvard University; Cambridge; United States has parent organization: NIH Blueprint for Neuroscience Research is parent organization of: Licensing issues in software and data is parent organization of: NITRC Enhanced Services is parent organization of: Resource Ontology Discussion Group is parent organization of: NITRC-IR is parent organization of: 1000 Functional Connectomes Project is parent organization of: NYU CSC TestRetest is parent organization of: NITRC Books is parent organization of: NITRC Community is parent organization of: ABIDE is parent organization of: COBRE is parent organization of: Group Sparse Canonical Correlation Analysis is parent organization of: Challenge Competitions Collection is parent organization of: 1000 Functional Connectomes Project |
NIBIB U24 EB023398; NIDA ; NIH Blueprint for Neuroscience Research ; NIMH ; NINDS R44 NS074540 |
PMID:26044860 PMID:18999128 |
Free, Freely available | nif-0000-00202, r3d100010784, r3d100011515 | https://doi.org/10.17616/R3W32N | SCR_003430 | SciCrunch Registry | Neuroimaging Informatics Tools and Resources Clearinghouse, , NeuroImaging Tools and Resources Collaboratory, Neuroimaging Informatics Tools Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools and Resources Clearinghouse, NITRC - Neuroimaging Informatics Tools Resources Clearinghouse | 2026-10-17 01:25:32 | 374 | ||||
|
elements of morphology Resource Report Resource Website 1+ mentions |
elements of morphology (RRID:SCR_003707) | data or information resource, data set, international standard specification, narrative resource, standard specification | Data set of standardized terms used to describe human morphology including definitions of terms for the craniofacies in general, the major components of the face, and the hands and feet. This provides a uniform and internationally accepted terms to describe the human phenotype. | dysmorphology, morphology, malformation, face, hand, foot, facial feature, phenotype, nose, philtrum, ear, lip, mouth, oral region, head, face, periorbital, terminology, vocabulary |
is used by: NIF Data Federation has parent organization: National Human Genome Research Institute |
NIH | PMID:19127575 PMID:19125436 PMID:19125433 PMID:19125428 PMID:19152422 PMID:19152421 |
Public domain, Acknowledgement requested | nlx_157874 | SCR_003707 | SciCrunch Registry | Human Malformation Terminology, Elements of Morphology: Human Malformation Terminology | 2026-10-17 01:25:38 | 7 | ||||||
|
Synapse Web Resource Report Resource Website 50+ mentions |
Synapse Web (RRID:SCR_003577) | atlas, data or information resource, image collection, narrative resource, training material | A portal into the 3D ultrastructure of the brain providing: Anatomy of astrocytes, axons, dendrites, hippocampus, organelles, synapses; procedures of 3D reconstruction and tissue preparation; as well as an atlas of ultrastructural neurocytology (by Josef Spacek), online aligned images, and reconstructed dendrites. Synapse Web hosts an ultrastructural atlas containing more than 500 electron micrographs (added to regularly) that identify unique ultrastructural and cellular components throughout the brain. Additionally, Synapse Web has raw images, reconstructions, and quantitative data along with tutorial instructions and numerous tools for investigating the functional structure of objects that have been serial thin sectioned for electron microscopy. | electron microscopy, 3d reconstruction, neuroanatomy, astrocyte, axon, brain, cellular, dendrite, hippocampus, micrograph, microscopy, neurocytology, organelle, structure, synapse, tissue, ultrastructural, light microscopy, neuron, rat, experimental protocol, synapse structure |
is used by: NIF Data Federation has parent organization: University of Texas at Austin; Texas; USA |
The Human Brain Project ; NIDA R01 MH/DA 57351; NIMH R01 MH/DA 57351; NIBIB EB002170 |
Copyrighted, Acknowledgement required | nif-0000-00026 | SCR_003577 | SciCrunch Registry | SynapseWeb | 2026-10-17 01:26:00 | 73 | |||||||
|
NeuroVault Resource Report Resource Website 100+ mentions |
NeuroVault (RRID:SCR_003806) | data repository, service resource, storage service resource | Data repository where researchers can publicly store and share unthresholded statistical brain activation maps produced by MRI and PET studies. | neuroimaging, fmri, mri, functional mri assay, pet, brain activation map, brain, statistical map, neuroimaging repository |
uses: NeuroSynth is used by: NIF Data Federation is used by: Integrated Datasets is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Stanford Center for Reproducible Neuroscience |
International Neuroinformatics Coordinating Facility ; Max-Planck-Gesellschaft ; Max Planck Institute for Human Cognitive and Brain Sciences; Leipzig; Germany |
Creative Commons Zero License | nlx_158106, r3d100012842 | http://neurovault.org/api, https://doi.org/10.17616/R31NJMEI | SCR_003806 | SciCrunch Registry | NeuroVault - A public repository of unthresholded brain activation maps | 2026-10-17 01:26:05 | 363 | ||||||
|
PubChem Resource Report Resource Website 10000+ mentions |
PubChem (RRID:SCR_004284) | data or information resource, data repository, database, service resource, storage service resource | Collection of information about chemical structures and biological properties of small molecules and siRNA reagents hosted by the National Center for Biotechnology Information (NCBI). | collection, information, data, chemical, structure, biological, property, small, molecule, siRNA reagent, bio.tools |
uses: ChEMBL is used by: NIF Data Federation is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition is used by: GEROprotectors is listed by: OMICtools is listed by: re3data.org is listed by: NIH Data Sharing Repositories is listed by: bio.tools is listed by: Debian is related to: NCBI Structure is related to: Molecular Libraries Program is related to: NIH Data Sharing Repositories is related to: PubChem BioAssay has parent organization: NCBI is parent organization of: PubChem Substance works with: MiMeDB |
NLM | PMID:21418625 PMID:21272340 PMID:20970519 PMID:20298522 PMID:19825798 |
Free, Freely Available | biotools:pubchem, nlx_42691, nlx_29861, r3d100010538, OMICS_01587 | https://bio.tools/pubchem, https://doi.org/10.17616/R3GW37 | SCR_004284 | SciCrunch Registry | 2026-10-17 01:26:10 | 15598 | ||||||
|
NITRC-IR Resource Report Resource Website 1+ mentions |
NITRC-IR (RRID:SCR_004162) | NITRC IR | catalog, data or information resource, data repository, database, image database, image repository, service resource, storage service resource | Data repository for neuroimaging data in DlCOM and NIFTI formats. It allows users to search for and freely download publicly available data sets relating to normal subjects and those with diagnoses such as: schizophrenia, ADHD, autism, and Parkinson's disease.XNAT-based image registry that supports both NIfTI and DICOM images to promote re-use and integration of NIH funded data. | database, neuroimaging, magnetic resonance, mri, image collection, nifti, dicom |
uses: XNAT Central is used by: NIF Data Federation lists: 1000 Functional Connectomes Project lists: studyforrest.org is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: 1000 Functional Connectomes Project is related to: NITRC Enhanced Services has parent organization: NeuroImaging Tools and Resources Collaboratory (NITRC) |
Bipolar Disorder, Schizophrenia, Parkinson's disease, ADHD | NIBIB U24 EB023398; NINDS R44 NS074540 |
PMID:26044860 | Free, Available for download, Freely available | nlx_18447, SCR_015623 | SCR_004162 | SciCrunch Registry | NeuroImaging Tools and Resources Collaboratory Image Repository, NITRC Image Repository | 2026-10-17 01:26:01 | 8 | ||||
|
NeuroPod Resource Report Resource Website |
NeuroPod (RRID:SCR_004329) | NeuroPod | data or information resource, narrative resource, podcast | NeuroPod is the neuroscience podcast from Nature, produced in association with the Dana Foundation. Each month, join us as we delve into the latest research on the brain, from its molecular makings to the mysteries of the mind. We''ll also be bringing you the latest news from neuroscience conferences around the globe, along with special reports on hot areas in neuroscience. |
is used by: NIF Data Federation is related to: Integrated Podcasts |
The Dana Foundation | nlx_34737 | SCR_004329 | SciCrunch Registry | NeuroPod Podcasts | 2026-10-17 01:26:11 | 0 | ||||||||
|
Gray Matters Resource Report Resource Website |
Gray Matters (RRID:SCR_004433) | data or information resource, narrative resource, podcast | THIS RESOURCE IS NO LONGER IN SERVICE, documented on September 06, 2013. Gray Matters is a radio series on brain topics that has been produced since 1994 by Public Radio International in association with the Dana Alliance. More than 25 programs have been created on topics ranging from stress, neuroethics, learning throughout life and sports, fitness and the Brain. Dana Alliance members serve as advisers to Gray Matters programming and are interviewed during the programs. The transcripts are also available. |
is used by: NIF Data Federation is related to: Integrated Podcasts |
The Dana Foundation | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_54435 | SCR_004433 | SciCrunch Registry | Gray Matters Radio Series | 2026-10-17 01:25:56 | 0 | ||||||||
|
Health.Data.gov Resource Report Resource Website 10+ mentions |
Health.Data.gov (RRID:SCR_004386) | data or information resource, database, software resource | Public, high-value federal datasets, tools, and applications using data about health and health care gathered from agencies across the U.S. government. | health, medicare, medicaid, epidemiology, treatment, population statistics, biomedical research, safety, administrative, health care cost, quality measurement, health care provider, children's health, child, health care, data set |
is used by: NIF Data Federation is used by: Integrated Datasets has parent organization: Data.gov |
Public, Acknowledgement requested | r3d100010593, nlx_143714 | https://doi.org/10.17616/R3589H | http://www.data.gov/communities/node/81/data_tools | SCR_004386 | SciCrunch Registry | US HealthData Gov, Health Data and Tools, Health.Data.gov Data Tools, Health Data and Tools Available on Data.gov | 2026-10-17 01:26:11 | 20 | ||||||
|
TAIR Resource Report Resource Website 5000+ mentions |
TAIR (RRID:SCR_004618) | TAIR, AGI LocusCode | data or information resource, database | Database of genetic and molecular biology data for the model higher plant Arabidopsis thaliana. Data available includes the complete genome sequence along with gene structure, gene product information, metabolism, gene expression, DNA and seed stocks, genome maps, genetic and physical markers, publications, and information about the Arabidopsis research community. Gene product function data is updated every two weeks from the latest published research literature and community data submissions. Gene structures are updated 1-2 times per year using computational and manual methods as well as community submissions of new and updated genes. TAIR also provides extensive linkouts from data pages to other Arabidopsis resources. The data can be searched, viewed and analyzed. Datasets can also be downloaded. Pages on news, job postings, conference announcements, Arabidopsis lab protocols, and useful links are provided. | genetic, molecular biology, gene, genome, structure, product, metabolism, gene expression, dna, seed stock, genome map, genetic marker, physical marker, genome sequence, gene product, blast, experimental protocol, gold standard |
is used by: NIF Data Federation is listed by: OMICtools is listed by: re3data.org is listed by: DataCite is related to: AmiGO is related to: Saskatoon Arabidopsis T-DNA mutant population SK Collection is related to: CLENCH has parent organization: Carnegie Institution for Science is parent organization of: TAIR Keyword Browser is parent organization of: PubSearch |
NSF DBI-0850219; corporate and nonprofit organizations |
PMID:22140109 PMID:17986450 PMID:12444417 PMID:12519987 PMID:18287693 |
r3d100010185, nlx_61477, OMICS_01662 | https://doi.org/10.17616/R3QW21 | SCR_004618 | SciCrunch Registry | AGI LocusCode, The Arabidopsis Information Resource | 2026-10-17 01:26:06 | 9170 | |||||
|
GeneDB Lmajor Resource Report Resource Website 1+ mentions |
GeneDB Lmajor (RRID:SCR_004613) | GeneDB_Lmajor, GeneDB Lmajor, GeneDB L. major, | analysis service resource, data analysis service, data or information resource, database, production service resource, service resource | Database of the most recent sequence updates and annotations for the L. major genome. New annotations are constantly being added to keep up with published manuscripts and feedback from the Trypanosomatid research community. You may search by Protein Length, Molecular Mass, Gene Type, Date, Location, Protein Targeting, Transmembrane Helices, Product, GO, EC, Pfam ID, Curation and Comments, and Dbxrefs. BLAST and other tools are available. Leishmania species cause a spectrum of human diseases in tropical and subtropical regions of the world. We have sequenced the 36 chromosomes of the 32.8-megabase haploid genome of Leishmania major (Friedlin strain) and predict 911 RNA genes, 39 pseudogenes, and 8272 protein-coding genes, of which 36% can be ascribed a putative function. These include genes involved in host-pathogen interactions, such as proteolytic enzymes, and extensive machinery for synthesis of complex surface glycoconjugates. The Pathogen Genomics group at the Wellcome Trust Sanger Institute played a major role in sequencing the genome of Leishmania major (see Ivens et al.) Details of the centres involved and which chromosomes they sequenced, are given. The sequence data were obtained by adopting several parallel approaches, including complete cosmid sequencing, whole chromosome shotguns and/or BAC sequencing/skimming. The Leishmania parasite is an intracellular pathogen of the immune system targeting macrophages and dendritic cells. The disease Leishmaniasis affects the populations of 88 counties worldwide with symptoms ranging from disfiguring cutaneous and muco-cutaneous lesions that can cause widespread destruction of mucous membranes to visceral disease affecting the haemopoetic organs. In collaboration with GeneDB, the EuPathDB genomic sequence data and annotations are regularly deposited on TriTrypDB where they can be integrated with other datasets and queried using customized queries. | genome, gene, rna gene, rna, pseudogene, protein-coding, function, host-pathogen interaction, interaction, proteolytic enzyme, glycoconjugate, sequence annotation |
is used by: NIF Data Federation is related to: AmiGO is related to: TriTrypDB has parent organization: GeneDB |
Wellcome Trust | PMID:16020728 | nlx_60997 | SCR_004613 | SciCrunch Registry | Leishmania major strain Friedlin, Leishmania major strain Friedlin homepage on GeneDB, GeneDB Leishmania major, Leishmania major strain Friedlin on GeneDB | 2026-10-17 01:25:55 | 7 |
Can't find your Tool?
We recommend that you click next to the search bar to check some helpful tips on searches and refine your search firstly. Alternatively, please register your tool with the SciCrunch Registry by adding a little information to a web form, logging in will enable users to create a provisional RRID, but it not required to submit.
Welcome to the NIF Resources search. From here you can search through a compilation of resources used by NIF and see how data is organized within our community.
You are currently on the Community Resources tab looking through categories and sources that NIF has compiled. You can navigate through those categories from here or change to a different tab to execute your search through. Each tab gives a different perspective on data.
If you have an account on NIF then you can log in from here to get additional features in NIF such as Collections, Saved Searches, and managing Resources.
Here is the search term that is being executed, you can type in anything you want to search for. Some tips to help searching:
If you are logged into NIF you can add data records to your collections to create custom spreadsheets across multiple sources of data.
Here are the facets that you can filter the data by.
If you have any further questions please check out our FAQs Page to ask questions and see our tutorials. Click this button to view this tutorial again.
Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
