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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Harvard University; Cambridge; United States Resource Report Resource Website 500+ mentions |
Harvard University; Cambridge; United States (RRID:SCR_011273) | Harvard | university | Institution of higher education in the United States. Private Ivy League research university in Cambridge, Massachusetts. | research, private, undergraduate, graduate, master's, doctoral, phD, institution, university |
uses: ShareLaTeX uses: Overleaf uses: ReadCube uses: DIRECT2experts uses: Benchling uses: Writefull uses: Paperpile uses: GenomeCompiler is affiliated with: Broad Institute is related to: Beta Cell Biology Consortium is related to: ShareLaTeX is related to: CalR is related to: dcmqi is related to: PROMIS 2 MY Health is parent organization of: EGO - Eukaryotic Gene Orthologs is parent organization of: Drosophila RNAi Screening Center is parent organization of: FAS Center For Systems Biology is parent organization of: DF/HCC Health Communication Core is parent organization of: DF/HCC Specialized Histopathology Services Core is parent organization of: Harvard HSCI iPS Cell Core Facility is parent organization of: Harvard Partners HealthCare Center for Personalized Genetic Medicine Bioinformatics Core Facility is parent organization of: Wyss Institute Imaging Core is parent organization of: Harvard FAS Bauer Core Laboratory is parent organization of: Harvard - Oxford Cortical Structural Atlas is parent organization of: Harvard Medical School, Department of Systems Biology: The Megason Lab - MegaCapture Software is parent organization of: Dataverse Network Project is parent organization of: edX is parent organization of: Authorea is parent organization of: BioNumbers is parent organization of: SNPHunter is parent organization of: NeuroImaging Tools and Resources Collaboratory (NITRC) is parent organization of: Digital Access to Scholarship at Harvard is parent organization of: Data Scientist Training for Librarians is parent organization of: Arnold Arboretum of Harvard University: Weld Hill Microscopy Lab is parent organization of: Arnold Arboretum of Harvard University: Weld Hill Molecular Lab is parent organization of: 3D Slicer is parent organization of: GeneMerge is parent organization of: High Resolution Mouse Brain Atlas is parent organization of: Journal of Comparative Neurology Antibody database is parent organization of: FlyBase is parent organization of: CardioGenomics is parent organization of: Harvard Medical School Division of Medical Sciences is parent organization of: DPInteract is parent organization of: Gene Ontology Partition Database is parent organization of: MHCPEP is parent organization of: SDR: Specificity-Determining Residues in Protein Families is parent organization of: Harvard Medical School, Department of Systems Biology: The Megason Lab -GoFigure Software is parent organization of: MedGene is parent organization of: New England Primate Research School is parent organization of: Boston Area Diabetes Endocrinology Research Center Metabolic Physiology and Energy Balance Core Facility is parent organization of: Harvard FAS Magnetic Resonance Laboratory is parent organization of: Cheng Li Lab of Computational Genomics is parent organization of: Motif Extractor is parent organization of: HIV Brain Sequence Database is parent organization of: Arnold Arboretum of Harvard University: Weld Hill Growth Facilities is parent organization of: HSDM Micro CT Core is parent organization of: DF/HCC Biostatistics Core Facility is parent organization of: DF/HCC Cancer Pharmacology Core is parent organization of: Dana Farber and Harvard Cancer Center Cancer Proteomics Center is parent organization of: DF/HCC Cell Manipulation Core Facility is parent organization of: DF/HCC Community Practice Research Core is parent organization of: DF/HCC High-Throughput Polymorphism Detection Core is parent organization of: DF/HCC Monoclonal Antibody Core is parent organization of: DF/HCC Pathology Specimen Locator is parent organization of: DF/HCC Rodent Histopathology Core Facility is parent organization of: DF/HCC Tissue Microarray and Imaging Core Facility is parent organization of: DF/HCC Tumor Imaging Metrics Core Facility is parent organization of: HMS Microfluidics Core Facility is parent organization of: HSCI Humanized Neonatal Mouse Center is parent organization of: Harvard Bioinformatics Core at Joslin Diabetes Center is parent organization of: Harvard CNS Imaging and Analysis Facility is parent organization of: Harvard CNS NNIN/C Computational Facility is parent organization of: Harvard CNS Nanofabrication Facility is parent organization of: Harvard CNS Nanomaterial Facility is parent organization of: Harvard Center for Biological Imaging is parent organization of: Harvard Digestive Diseases Center Biomedical CORE B: Microscopy and Histopathology is parent organization of: Harvard FAS Bauer Core: Mass Spectrometry and Proteomics Core Laboratory is parent organization of: Harvard FAS Center for Brain Science - Electron Microscopy Core Facility is parent organization of: Harvard PCMM Flow and Imaging Cytometry Resource is parent organization of: Harvard FAS Center for Brain Science - Imaging Core Facility is parent organization of: Harvard FAS Center for Brain Science - Neuroengineering Core Facility is parent organization of: Harvard FAS Center for Brain Science - Neuroimaging Core Facility is parent organization of: Harvard FAS Center for Crystallographic Studies is parent organization of: Harvard FAS Research Computing Core is parent organization of: Harvard FAS Small Molecule Mass Spectrometry Facility is parent organization of: Harvard PCPGM Genotyping Facility is parent organization of: Harvard Genome Modification Facility Harvard University is parent organization of: Harvard PCMM Optical Microscopy Core is parent organization of: Harvard PCPGM Biorepository for Medical Discovery is parent organization of: Harvard PCPGM Biosample Services Facility is parent organization of: Harvard PCPGM DNA Sequencing Facility is parent organization of: Harvard PCPGM Microarray Facility is parent organization of: Harvard Partners Research Computing Core is parent organization of: MGH HSCI-CRM Flow Cytometry Core Facility is parent organization of: Ragon Institute Biostatistics Core is parent organization of: Ragon Institute Imaging Core Flow Cytometry is parent organization of: Ragon Institute Imaging Core Microscopy is parent organization of: SERI Flow Cytometry Core Facility is parent organization of: Wyss Institute Machine Shop / 3D Prototyping Core is parent organization of: Wyss Institute Materials Characterization Core is parent organization of: Computational Biology and Functional Genomics Laboratory at Harvard is parent organization of: Harvard Medical School; Massachusetts; USA is parent organization of: Harvard T.H. Chan School of Public Health is parent organization of: Harvard Tumor Imaging Metrics Core Facility is parent organization of: Harvard SERI Graphic Services Core is parent organization of: Harvard Digestive Diseases Center Biomedical CORE D: Gnotobiotic Mice, Microbiology and Metagenomics is parent organization of: Harvard University Labs and Facilities is parent organization of: HNDC Drug Discovery in Neurodegeneration is parent organization of: Eagle I is parent organization of: PolyPhen: Polymorphism Phenotyping is parent organization of: PLINK/SEQ is parent organization of: FreeSurfer is parent organization of: Magnaporthe comparative Database is parent organization of: CTSAconnect is parent organization of: International Stroke Database is parent organization of: International Stroke Database/Software is parent organization of: ChemBank is parent organization of: EM-DECODER is parent organization of: Ruby NIfTI is parent organization of: CummeRbund is parent organization of: BINOCh is parent organization of: Harvard Digestive Disease Center is parent organization of: GraPhlAn is parent organization of: biobakery is parent organization of: DeepNeuro is parent organization of: Joslin Diabetes Center is parent organization of: PAGODA is parent organization of: Harvard School of Public Health Microbiome Analysis Core Facility is parent organization of: Diffusion Toolkit is parent organization of: Cistrome is parent organization of: ADMIXTOOLS is parent organization of: SARS-CoV-2 mutation effects and 3D structure prediction from sequence covariation is parent organization of: Harvard Medical School PCMM Microscopy Core Facility is parent organization of: PolicyModels is parent organization of: Cistrome is parent organization of: Biofactoid is parent organization of: Camera Control project is parent organization of: Harvard University Bauer Core Facility is parent organization of: Harvard Tissue Atlas is parent organization of: Harvard Medical School Center for Cancer Systems Pharmacology is parent organization of: SPRING is parent organization of: Minerva is parent organization of: scimap is parent organization of: moseq2-app is parent organization of: Keypoint MoSeq is parent organization of: Harvard University Chan School of Public Health Bioinformatics Core Facility is parent organization of: VenomView |
SCR_016676, Wikidata:Q13371, ISNI:000000041936754X, Crossref funder ID:100007229, nlx_90063, grid.38142.3c | https://ror.org/03vek6s52 | SCR_011273 | Harvard University | 2026-08-01 12:04:24 | 728 | |||||||
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Beta Cell Biology Consortium Resource Report Resource Website 50+ mentions |
Beta Cell Biology Consortium (RRID:SCR_005136) | BCBC | material resource, biomaterial supply resource, cell repository | THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone., documented on August 1, 2015. Consortium that aims to facilitate interdisciplinary collaborations to advance the understanding of pancreatic islet development and function, with the goal of developing innovative therapies to correct the loss of beta cell mass in diabetes, including cell reprogramming, regeneration and replacement. They are responsible for collaboratively generating the necessary reagents, mouse strains, antibodies, assays, protocols, technologies and validation assays that are beyond the scope of any single research effort. The scientific goals for the BCBC are to: * Use cues from pancreatic development to directly differentiate pancreatic beta cells and islets from stem / progenitor cells for use in cell-replacement therapies for diabetes, * Determine how to stimulate beta cell regeneration in the adult pancreas as a basis for improving beta cell mass in diabetic patients, * Determine how to reprogram progenitor / adult cells into pancreatic beta-cells both in-vitro and in-vivo as a mean for developing cell-replacement therapies for diabetes, and * Investigate the progression of human type-1 diabetes using patient-derived cells and tissues transplanted in humanized mouse models. Many of the BCBC investigator-initiated projects involve reagent-generating activities that will benefit the larger scientific community. The combination of programs and activities should accelerate the pace of major new discoveries and progress within the field of beta cell biology. | RIN, Resource Information Network, pancreatic islet, mouse, beta cell, pancreas, pancreatic development, embryonic stem cell, cell line, genomics, antibody, adenovirus, functional genomics, mouse embryonic stem cell line, mouse strain, protocol, embryonic stem cell line, data sharing, data set, gene expression, gene, pancreatic islet development, pancreatic islet function, basic science, basic research, cell reprogramming, cell regeneration, cell replacement, RRID Community Authority |
is used by: NIF Data Federation is used by: Integrated Animals is used by: NIDDK Information Network (dkNET) is listed by: One Mind Biospecimen Bank Listing is listed by: re3data.org is listed by: Consortia-pedia is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources is listed by: Resource Information Network is related to: dkCOIN is related to: Karolinska Institute; Stockholm; Sweden is related to: University of California at Los Angeles; California; USA is related to: Stanford University; Stanford; California is related to: University of Massachusetts Medical School; Massachusetts; USA is related to: Hebrew University Hadassah Medical School; Jerusalem; Israel is related to: Philipps-University Marburg; Marburg; Germany is related to: Imperial College London; London; United Kingdom is related to: Childrens Hospital of Philadelphia - Research Institute; Pennsylvania; USA is related to: Icahn School of Medicine at Mount Sinai; New York; USA is related to: University of California at San Francisco; California; USA is related to: Massachusetts Institute of Technology; Massachusetts; USA; is related to: Hadassah Medical Center; Jerusalem; Israel is related to: DanStem is related to: Oregon Health and Science University; Oregon; USA is related to: Vanderbilt University; Tennessee; USA is related to: University of Chicago; Illinois; USA is related to: University of Massachusetts; Massachusetts; USA is related to: University of Colorado Boulder; Colorado; USA is related to: Vrije Universiteit Brussel; Brussels; Belgium is related to: University of Geneva; Geneva; Switzerland is related to: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA is related to: McEwen Centre for Regenerative Medicine is related to: Seattle Childrens Research Institute; Washington; USA is related to: Columbia University; New York; USA is related to: University of Texas Southwestern Medical Center; Texas; USA is related to: Hagedorn Research Institute; Gentofte; Denmark is related to: Howard Hughes Medical Institute is related to: Northwestern University; Illinois; USA is related to: CAMRD is related to: French National Center for Scientific Research is related to: University of California at San Diego; California; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Copenhagen; Copenhagen; Denmark is related to: Jackson Laboratory is related to: Max Planck Institute for Heart and Lung Research; Bad Nauheim; Germany is related to: Indiana University; Indiana; USA is related to: University of Toronto; Ontario; Canada is related to: Harvard University; Cambridge; United States is related to: Harvard Medical School; Massachusetts; USA is related to: Integrated Manually Extracted Annotation has parent organization: Vanderbilt University; Tennessee; USA is parent organization of: Beta Cell Genomics Ontology |
Type 1 diabetes, Diabetes | NIDDK DK-01-014; NIDDK DK-01-17; NIDDK DK-01-18; NIDDK DK-09-011 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_144143 | SCR_005136 | 2026-08-03 09:32:50 | 59 | ||||||
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PROMIS 2 MY Health Resource Report Resource Website 1+ mentions |
PROMIS 2 MY Health (RRID:SCR_021215) | topical portal, data or information resource, portal, disease-related portal | Portal for cross sectional study where population based sample of adult cancer patients were recruited for mailed survey (with telephone follow-up of non-responders) to evaluate equivalence of PROMIS measures across socio-demographic and clinical sub-groups. | PROMIS, cross sectional study, adult cancer patients, mailed survey, |
is related to: Harvard University; Cambridge; United States is related to: Dataverse Network Project |
female breast cancer, uterine and cervical cancers, prostate cancer, colorectal cancer, non- small cell lung cancer (NSCLC) and non-Hodgkin’s Lymphoma, | Restricted | SCR_021215 | 2026-08-03 09:37:22 | 1 | |||||||||
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dcmqi Resource Report Resource Website 1+ mentions |
dcmqi (RRID:SCR_016933) | dcmqi | image processing software, software toolkit, software application, data processing software, software library, software resource | Software library to help with the conversion between imaging research formats and the standard DICOM representation for image analysis results. Used to implement conversion of the data stored in commonly used research formats into the standard DICOM representation. Available as a precompiled binary package for every major operating system, as a Docker image, and as an extension to 3D Slicer. | DICOM, converter, medical, image, computing, quantitative, analysis, clinical, data, metadata, radiology, standard, bio.tools |
is listed by: Debian is listed by: bio.tools is related to: Harvard University; Cambridge; United States |
NCI U24 CA180918; NIBIB P41 EB015902; NIBIB P41 EB01589; NIBIB R01 EB014955 |
PMID:29092948 | Free, Available for download, Freely available, Tutorial available | biotools:dcmqi | https://github.com/QIICR/dcmqi, https://bio.tools/dcmqi | SCR_016933 | DICOM for Quantitative Imaging, The Digital imaging and Communications in Medicine for Quantitative Imaging, Digital imaging and Communications in Medicine for Quantitative Imaging, DCMQI | 2026-08-03 09:36:58 | 3 | ||||
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CalR Resource Report Resource Website 100+ mentions |
CalR (RRID:SCR_015849) | software application, data processing software, web application, data analysis software, software resource, data visualization software | A Web-based Analysis Tool for Indirect Calorimetry Experiments which measure physiological energy balance. It is a web application for indirect calorimetry analysis which generates customizable time, bar and regression plots for calorimetry data using two-, three-, and four-group templates. | indirect, calorimerty, analysis, visualization, energy, balance, food intake, energy expenditure, metabolism, metabolic phenotyping, CLAMS, PhenoMaster, Prometheon, biostatistics, ANCOVA, reproducibility, Columbus Instruments, Sable Systems, TSE | is related to: Harvard University; Cambridge; United States | Mouse Metabolic Phenotyping Center ; Harvard Digestive Disease Center ; NIDDK |
DOI:10.1101/213967 | Freely available, Public | https://calrapp.org | SCR_015849 | A Web Application for Indirect Calorimetry Analysis | 2026-08-03 09:36:08 | 196 | ||||||
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ShareLaTeX Resource Report Resource Website 1+ mentions |
ShareLaTeX (RRID:SCR_002652) | ShareLaTeX | software resource, authoring tool, software application | An collaborative tool which allows users to edit LaTeX documents in their browser. Multiple users can simultaneously access and edit the same LaTeX document and see the changes in real time. The latest version is available online, and the built in chat helps communicate with others while editing. | collaboration tool, authoring, LaTex |
is used by: University of Toronto; Ontario; Canada is used by: Stanford University; Stanford; California is used by: Harvard University; Cambridge; United States is used by: University of Tokyo; Tokyo; Japan is used by: University of Liverpool; Liverpool; United Kingdom is used by: University of Cambridge; Cambridge; United Kingdom is used by: Imperial College London; London; United Kingdom is used by: Yale University; Connecticut; USA is used by: University of Oxford; Oxford; United Kingdom is used by: Massachusetts Institute of Technology; Massachusetts; USA; is listed by: FORCE11 is related to: FORCE11 is related to: University of Toronto; Ontario; Canada is related to: Stanford University; Stanford; California is related to: Harvard University; Cambridge; United States is related to: University of Tokyo; Tokyo; Japan is related to: University of Liverpool; Liverpool; United Kingdom is related to: University of Cambridge; Cambridge; United Kingdom is related to: Imperial College London; London; United Kingdom is related to: Yale University; Connecticut; USA is related to: University of Oxford; Oxford; United Kingdom is related to: Massachusetts Institute of Technology; Massachusetts; USA; |
Free, Available for download, Freely available | nlx_156080 | SCR_002652 | 2026-08-03 09:31:56 | 1 | ||||||||
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Harvard Medical School; Massachusetts; USA Resource Report Resource Website 1+ mentions |
Harvard Medical School; Massachusetts; USA (RRID:SCR_011267) | HMS | university | Graduate medical school of Harvard University and is located in the Longwood Medical Area of Boston, Massachusetts. |
uses: Scizzle is related to: LINCS Information Framework is related to: International AMD Genetics Consortium is related to: Beta Cell Biology Consortium is related to: Exemplar Microscopy Images of Tissues has parent organization: Harvard University; Cambridge; United States is parent organization of: Semantic Web Applications in Neuromedicine (SWAN) Ontology is parent organization of: HMS NERCE FACSCalibur Flow Cytometer Resource is parent organization of: Harvard NeuroDiscovery Center - Biomarker Study is parent organization of: National Resource for Imaging Mass Spectrometry is parent organization of: Internet Brain Segmentation Repository is parent organization of: Internet Brain Volume Database is parent organization of: Diffusion Tractography with Kalman Filter is parent organization of: STAPLE is parent organization of: Annotation Ontology is parent organization of: New England National Primate Research Center is parent organization of: DGAP is parent organization of: Dana-Farber Cancer Institute is parent organization of: Harvard Brain Tissue Resource Center is parent organization of: Harvard University Neurobiology is parent organization of: Structural Biology Grid is parent organization of: Hapmix is parent organization of: Ancestrymap is parent organization of: WHO World Health Mental Health Surveys is parent organization of: National Comorbidity Survey is parent organization of: National Temporal Bone Pathology Resource Registry is parent organization of: XP-CLR is parent organization of: Eigensoft is parent organization of: Whole Brain Atlas is parent organization of: Music and Neuroimaging Laboratory is parent organization of: Internet Analysis Tools Registry is parent organization of: SHRINE is parent organization of: HMS LINCS Database is parent organization of: It Takes 30 is parent organization of: PrimerBank is parent organization of: National Survey of Midlife Development in the United States is parent organization of: Neuroimage Analysis Center is parent organization of: HMS Flow Cytometry Facility is parent organization of: HMS BADERC Flow Cytometry Core is parent organization of: Harvard Medical School Electron Microscopy Core Facility is parent organization of: HMS Drosophila RNAi Screening Center is parent organization of: HMS East Quad NMR Core Facility is parent organization of: HMS Genetically Modified NOD Mouse Core Facility is parent organization of: HMS Human Sample Procurement Core Facility is parent organization of: Harvard Medical School ICCB-Longwood Screening Core Facility is parent organization of: HMS Image and Data Analysis Core is parent organization of: HMS Microbiology and Immunobiology Biological Chemistry Mass Spec Facility is parent organization of: HMS Molecular Electron Microscopy Facility is parent organization of: HMS NERCE Biomolecule Production Core Laboratory is parent organization of: HMS NERCE Confocal Microscope Resource is parent organization of: HMS NERCE Live-cell Imaging Core is parent organization of: HMS NERCE Microbiology and Animal Resources Core is parent organization of: Harvard Medical School Neurobiology Imaging Core Facility is parent organization of: HMS Nikon Imaging Center is parent organization of: HMS SBGrid Core is parent organization of: HMS Systems Biology Quad Machine Shop is parent organization of: HMS Taplin Mass Spectrometry Core Facility is parent organization of: HMS West Quad Computing Group is parent organization of: Harvard Gene Therapy Initiative Core is parent organization of: Harvard NeuroDiscovery Center - Biostatistics Consultation is parent organization of: Harvard NeuroDiscovery Center - Cell-based Assays Core is parent organization of: Harvard Medical School; Department of Neurobiology; Born Lab is parent organization of: CGHweb is parent organization of: HNDC Enhanced NeuroImaging Core is parent organization of: HMS East Quad NMR Facility is parent organization of: HMS Research Imaging Solutions is parent organization of: HNDC NeuroBehavior Laboratory Core is parent organization of: Childrens Hospital Boston Intellectual And Developmental Disabilities Research Center - Molecular Genetics Core is parent organization of: HMS Electron Microscopy Core Facility is parent organization of: HNDC Advanced Tissue Resource Center is parent organization of: DF/HCC DNA Resource Core is parent organization of: Harvard NeuroDiscovery Center Labs and Facilities is parent organization of: HMS Systems Biology Flow Cytometry Facility is parent organization of: TRACULA is parent organization of: CARDinal Plane VIEWing System is parent organization of: Center for Biomedical OCT Research is parent organization of: National Center for Image-Guided Therapy is parent organization of: Center for Functional Neuroimaging Technologies is parent organization of: MGH-USC Human Connectome Project is parent organization of: RLS Foundation Brain Bank is parent organization of: GoFish is parent organization of: Roth Laboratory is parent organization of: Segmentation of Hippocampus Subfields is parent organization of: WorfDB is parent organization of: 1000 Genomes: A Deep Catalog of Human Genetic Variation is parent organization of: MassGeneral Institute for Neurodegenerative Disease is parent organization of: Massachusetts Alzheimer's Disease Research Center is parent organization of: JIP Analysis Toolkit is parent organization of: Nutrition and Obesity Research Centers at Harvard Metabolic Phenotyping Core is parent organization of: Nutrition and Obesity Research Centers at Harvard Statistical Consultation is parent organization of: Nutrition and Obesity Research Centers at Harvard Genomics and Cell Biology Core is parent organization of: Nutrition and Obesity Research Centers at Harvard Metabolic Imaging Core is parent organization of: Nutrition and Obesity Research Centers at Harvard Administrative Core is parent organization of: Nutrition and Obesity Research Centers at Harvard is parent organization of: BioPlex is parent organization of: HMS LINCS Center is parent organization of: PopMedNet is parent organization of: Harvard Medical School Center for Macromolecular Interactions Core Facility is parent organization of: Harvard Medical School Biopolymers Core Facility is parent organization of: Harvard Medical School DNA Resource Core Facility is parent organization of: Two Armed Bandit Task project is parent organization of: DRSC/TRiP Functional Genomics Resources and DRSC-BTRR is parent organization of: Harvard Medical School Microscopy Resources On the North Quad Core Facility is parent organization of: Jekyll Tutorial is parent organization of: Laboratory of Systems Pharmacology program is parent organization of: Harvard Medical School Dana Farber Harvard Cancer Center Mouse Engineering Core Facility is parent organization of: Harvard Medical School Biomolecular Nuclear Magnetic Resonance Core Facility is parent organization of: Harvard Medical School Research Computing Core Facility is parent organization of: Beth Israel Deaconess Medical Center Precision RNA Medicine Detection Unit Core Facility, is parent organization of: Beth Israel Deaconess Medical Center Glycomics Core Facility is parent organization of: Beth Israel Deaconess Medical Center Translational MRI Research Core Facility is parent organization of: Beth Israel Deaconess Medical Center Functional Genomics and Bioinformatics Core Facility is parent organization of: Beth Israel Deaconess Medical Center Precision RNA Medicine Delivery Unit Core Facility is parent organization of: Beth Israel Deaconess Medical Center Mass Spectrometry Core Facility is parent organization of: Beth Israel Deaconess Medical Center Spatial Technologies Unit Core Facility is parent organization of: Beth Israel Deaconess Medical Center Confocal Imaging Core Facility is parent organization of: Beth Israel Deaconess Medical Center Genomics Proteomics Core Facility is parent organization of: Harvard Medical School Single Cell Core Facility is parent organization of: Harvard Medical School Mouse Behavior Core Facility is parent organization of: Harvard Medical School Harvard Cryo-Electron Microscopy Center for Structural Biology Core Facility is parent organization of: Harvard Medical School Nascent Transcriptomics Core Facility is parent organization of: Harvard Medical School Beth Israel Deaconess Medical Center Bioinformatics Core Facility is parent organization of: Boston Children's Hospital Molecular Genetics Core Facility is parent organization of: Beth Israel Deaconess Medical Center Flow Cytometry Core Facility is parent organization of: Boston Children's Hospital Cellular Imaging Core Facility is parent organization of: Harvard University School of Medicine BIDMC HIV-1 Neutralizing Antibody Core Facility is parent organization of: Beth Israel Deaconess Medical Center Biomarker and Metabolism Research Core Facility is parent organization of: Beth Israel Deaconess Medical Center Small Animal Imaging Core Facility is parent organization of: Beth Israel Deaconess Medical Center Preclinical Murine Pharmacogenetics Core Facility is parent organization of: Beth Israel Deaconess Medical Center Preclinical MRI Core Facility is parent organization of: Beth Israel Deaconess Medical Center Histology Core Facility is parent organization of: Beth Israel Deaconess Medical Center Electron Microscopy Core Facility is parent organization of: Beth Israel Deaconess Medical Center BIDMC Tissue Technologies Unit Core Facility is parent organization of: Beth Israel Deaconess Medical Center BIDMC Clinical Research Coordinator Core Facility is parent organization of: Beth Israel Deaconess Medical Center X-ray Crystallography Core Facility is parent organization of: Brigham and Women’s Hospital NeuroTechnology Studio Core Facility is parent organization of: Beth Israel Deaconess Medical Center BIDMC Zebrafish Research Core Facility is parent organization of: Beth Israel Deaconess Medical Center BILH/BIDMC REDCap Core Facility is parent organization of: BIDMC Clinical Research Center Clinical Services Core Facility is parent organization of: BIDMC Berenson-Allen Center for Noninvasive Brain Stimulation Clinical and Research Core Facility is parent organization of: BIDMC Division of Digital Psychiatry LAMP platform Core Facility is parent organization of: Harvard Medical School Beth Israel Deaconess Medical Center BIDMC Center for Patient-derived Models for Personalized Medicine Core Facility |
nlx_29403, ISNI:0000 0004 0378 0882, grid.471403.5, Wikidata:Q49121 | https://ror.org/03wevmz92 | SCR_011267 | Harvard Med School, Harvard Medical School | 2026-08-01 12:04:24 | 1 | ||||||||
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MedGene Resource Report Resource Website 1+ mentions |
MedGene (RRID:SCR_008122) | software resource | An algorithm that generates lists of genes associated with a gene or one or more disorders. The algorithm can be used in high-throughput screening experiments, can create disease-specific micro-arrays, and can sort the results of gene profiling data. Based on the co-citations of all Medline records, MedGene can retrieve the following relationships: 1. A list of human genes associated with a particular human disease in ranking order 2. A list of human genes associated with multiple human diseases in ranking order 3. A list of human diseases associated with a particular human gene in ranking order 4. A list of human genes associated with a particular human gene in ranking order 5. The sorted gene list from other disease related high-throughput experiments, such as micro-array 6. The sorted gene list from other gene related high-throughput experiments, such as micro-array | gene, disease, human order, microarray | has parent organization: Harvard University; Cambridge; United States | nif-0000-20869 | SCR_008122 | MedGene | 2026-08-01 12:03:27 | 4 | |||||||||
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Motif Extractor Resource Report Resource Website 100+ mentions |
Motif Extractor (RRID:SCR_008628) | software resource | motif-x (short for motif extractor) is a software tool designed to extract overrepresented patterns from any sequence data set. The algorithm is an iterative strategy which builds successive motifs through comparison to a dynamic statistical background. | has parent organization: Harvard University; Cambridge; United States | nif-0000-32002 | SCR_008628 | Motif-X | 2026-08-01 12:03:34 | 148 | ||||||||||
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BINOCh Resource Report Resource Website 1+ mentions |
BINOCh (RRID:SCR_002778) | BINOCh | software resource | Software that infers the identity of transcription factors used to regulate cell response to stimulus or determine a program of differentiation. It uses genome wide information on enhancer proximal nucleosome occupancy, acquired using ChIP-seq targeting enhancer related histone modifications., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 15,2026. | proximal nucleosome occupancy data, transcription factor determination, differentiation |
is listed by: OMICtools has parent organization: Dana-Farber Cancer Institute has parent organization: Harvard University; Cambridge; United States |
PMID:21551136 | THIS RESOURCE IS NO LONGER IN SERVICE | OMICS_00500 | SCR_002778 | Binding Inference from Nucleosome Occupancy Changes (BINOCh), BINOCh - Binding Inference from Nucleosome Occupancy Changes, Binding Inference from Nucleosome Occupancy Changes | 2026-08-01 12:01:55 | 3 | ||||||
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Broad Institute Resource Report Resource Website 1000+ mentions |
Broad Institute (RRID:SCR_007073) | Broad | institution | Biomedical and genomic research center located in Cambridge, Massachusetts, United States. Nonprofit research organization under the name Broad Institute Inc., and is partners with Massachusetts Institute of Technology, Harvard University, and the five Harvard teaching hospitals. Dedicated to advance understanding of biology and treatment of human disease to improve human health. | biomedical, genomic, research, center, nonprofit, organization, human, biology, disease |
is affiliated with: Massachusetts Institute of Technology; Massachusetts; USA; is affiliated with: Harvard University; Cambridge; United States is affiliated with: Integrative Human Microbiome Project is affiliated with: MIT; Cambridge; Massachusetts; United States is related to: LINCS Information Framework is related to: HMS LINCS Database is related to: Cancer Cell Line Encyclopedia is related to: GO2MSIG is parent organization of: ARACHNE is parent organization of: MuTect is parent organization of: SiPhy is parent organization of: ContEst is parent organization of: Broad Minded is parent organization of: JBrowse is parent organization of: Birdseed is parent organization of: VAAL is parent organization of: SomaticCall is parent organization of: BIRDSUITE is parent organization of: GATK is parent organization of: SNAP - SNP Annotation and Proxy Search is parent organization of: SYZYGY is parent organization of: Genetic Maps of the Rat Genome is parent organization of: LINCS Connectivity Map is parent organization of: Classification of Human Lung Carcinomas by mRNA Expression Profiling Reveals Distinct Adenocarcinoma Sub-classes is parent organization of: Haploview is parent organization of: Magnaporthe comparative Database is parent organization of: GeneCruiser is parent organization of: Fungal Genome Initiative is parent organization of: Gene Set Enrichment Analysis is parent organization of: GenePattern is parent organization of: MAGENTA is parent organization of: Multiple Myeloma Genomics Portal is parent organization of: ExAc is parent organization of: Ricopili is parent organization of: UnifiedGenotyper is parent organization of: SomaticIndelDetector is parent organization of: RNA-SeQC is parent organization of: Oncotator is parent organization of: ABSOLUTE is parent organization of: PathSeq is parent organization of: V-Phaser 2 is parent organization of: Indelocator is parent organization of: Scripture is parent organization of: VICUNA is parent organization of: Tuberculosis Database is parent organization of: HaploReg is parent organization of: CellProfiler Image Analysis Software is parent organization of: National Institute of Mental Health (NIMH) Human Genetics Initiative is parent organization of: ChemBank is parent organization of: GeneCluster 2: An Advanced Toolset for Bioarray Analysis is parent organization of: Ultrasome is parent organization of: Diabetes Genetics Initiative is parent organization of: Dog Genome Project is parent organization of: Gene Relationships Across Implicated Loci is parent organization of: InVEx is parent organization of: Broad Genetic Analysis Platform is parent organization of: CellProfiler Analyst is parent organization of: ALLPATHS-LG is parent organization of: MutSig is parent organization of: SegSeq is parent organization of: Argo Genome Browser is parent organization of: Integrative Genomics Viewer is parent organization of: MEDEA is parent organization of: Pathline is parent organization of: ASPGD is parent organization of: DGAP is parent organization of: BARD is parent organization of: 1000 Genomes: A Deep Catalog of Human Genetic Variation is parent organization of: Trinity is parent organization of: Genome Aggregation Database is parent organization of: GenomeSpace is parent organization of: Picard is parent organization of: Connectivity Map 02 is parent organization of: CMap is parent organization of: IndelGenotyper is parent organization of: Discovar assembler is parent organization of: Molecular Signatures Database is parent organization of: GSEA is parent organization of: Eagle is parent organization of: Morpheus by Broad Institute is parent organization of: Cancer Dependency Map Portal is parent organization of: LIGER is parent organization of: Drop-seq tools is parent organization of: scATAC Pipeline is parent organization of: Guide Design Resources is parent organization of: Smart-seq2 Single Sample Pipeline is parent organization of: Smart-seq2 Single Nucleus Multi Sample Pipeline is parent organization of: Broad Terra cloud commons for pathogen surveillance is parent organization of: Single Cell Portal is parent organization of: CEMBA MethylC Seq Pipeline is parent organization of: Pegasus is parent organization of: Cumulus is parent organization of: Cirrocumulus is parent organization of: BICCN Anatomy and Morphology Project is parent organization of: Terra is parent organization of: JUMP Cell Painting Consortium is parent organization of: Spectrum Mill is parent organization of: Polysolver is parent organization of: Brain Cell Data Viewer is parent organization of: Eagle is parent organization of: Broad Institute Imaging Platform Core Facility is parent organization of: ATAC Pipeline is parent organization of: ichorCNA is parent organization of: CRISPick is parent organization of: FireBrowse is parent organization of: Cellarium is parent organization of: multiVIB is parent organization of: SlideTags.wdl is parent organization of: Slide-seq Pipeline is parent organization of: BuildIndices is parent organization of: Broad Institute Genomics Platform has organization facet: GATK HaplotypeCaller has organization facet: GATK VariantFiltration |
Eli and Edythe Broad ; individual donors |
nif-0000-31438, grid.66859.34, Wikidata: Q4971893 | https://ror.org/05a0ya142 | SCR_007073 | Broad Institute of MIT and Harvard, Broad Institute Inc. | 2026-08-01 12:03:27 | 1897 | ||||||
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Computational Biology and Functional Genomics Laboratory at Harvard Resource Report Resource Website 100+ mentions |
Computational Biology and Functional Genomics Laboratory at Harvard (RRID:SCR_010240) | software resource | A computational biology laboratory that builds and redistributes genetic software tools. |
has parent organization: Harvard University; Cambridge; United States is parent organization of: GeneSigDB |
nlx_156871 | SCR_010240 | Quackenbush Lab | 2026-08-01 12:04:06 | 221 | ||||||||||
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FAS Center For Systems Biology Resource Report Resource Website 1+ mentions |
FAS Center For Systems Biology (RRID:SCR_000789) | group | A group dedicated to combining a variety of experimental and theoretical approaches to find general principles that explain the structure, behavior and evolution of cells and organisms. The center hosts a variety of fellows and faculty from various backgrounds such as biology, physics, chemistry, mathematics, computer science and engineering. | cell, organism, evolution, biology, physics, chemistry, mathematics, computer science, engineering, hybridization | has parent organization: Harvard University; Cambridge; United States | National Science Foundation DEB 0415718; National Science Foundation DEB 0640512 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30555 | SCR_000789 | FAS Center | 2026-08-01 12:01:25 | 2 | |||||||
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Writefull Resource Report Resource Website 1+ mentions |
Writefull (RRID:SCR_014006) | software resource, software application | A software application which provides feedback on writing, wording, and frequency of text by checking against databases of correct language. Users can highlight a chunk of text and use Writefull to see how often the specific text appears in different language databases. Writefull can also offer synonyms and suggestions for wording. Writefull is supported by numerous writing tools which include MS Word and Gmail. | software application, editing tool, language tool |
uses: Google Scholar is used by: Harvard University; Cambridge; United States is used by: University College London; London; United Kingdom is used by: University of Oxford; Oxford; United Kingdom is used by: Columbia University; New York; USA is used by: Cornell University; New York; USA is used by: University of Toronto; Ontario; Canada is used by: University of Melbourne; Victoria; Australia is used by: Australian National University; Acton; Australia is listed by: Connected Researchers is related to: Connected Researchers |
Account required, Fee (for different packages) | SCR_014006 | 2026-08-01 12:11:04 | 1 | ||||||||||
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EM-DECODER Resource Report Resource Website 1+ mentions |
EM-DECODER (RRID:SCR_000023) | EM-DECODER | software resource, software application | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. A haplotype inference program. | gene, genetic, genomic |
is listed by: Genetic Analysis Software has parent organization: Harvard University; Cambridge; United States |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_154297 | SCR_000023 | 2026-08-01 12:10:28 | 1 | ||||||||
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Harvard Medical School Center for Cancer Systems Pharmacology Resource Report Resource Website |
Harvard Medical School Center for Cancer Systems Pharmacology (RRID:SCR_022831) | CCSP | organization portal, data or information resource, portal | Center includes studies for responsiveness and resistance to anti cancer drugs. Committed to training students and postdocs, promoting junior faculty and ensuring that data and software are reproducible, reliable and publicly accessible. Member of National Cancer Institute’s Cancer Systems Biology Consortium. | anti cancer drugs, responsiveness and resistance, National Cancer Institute, Systems Biology Consortium. | has parent organization: Harvard University; Cambridge; United States | Cancer, Melanoma, Triple negative breast cancer (TNBC), Glioblastoma multiforme (GBM) | NCI U54 CA225088 | Free, Freely available | SCR_022831 | Center for Cancer Systems Pharmacology | 2026-08-02 09:08:32 | 0 | ||||||
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Ruby NIfTI Resource Report Resource Website |
Ruby NIfTI (RRID:SCR_014164) | software library, software toolkit, software resource | A library for handling NIfTI data in the Ruby programming language. Ruby NIfTI supports basic read and write access to NIfTI files, including basic and extended header information and image information. It doesn't attempt to touch the image data but it does provide access to qform and sform orientation matrices. It also provides a nice interface to get at NIfTI info from within Ruby. | nifti library, ruby, nifti |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) has parent organization: Harvard University; Cambridge; United States |
https://github.com/brainmap/nifti | SCR_014164 | 2026-08-02 09:06:27 | 0 | ||||||||||
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DeepNeuro Resource Report Resource Website 1+ mentions |
DeepNeuro (RRID:SCR_016911) | software toolkit, software resource | Software Python package for neuroimaging data. Framework to design and train neural network architectures. Used in medical imaging community to ensure consistent performance of networks across variable users, institutions, and scanners. | Design and train neural network architectures, medical imaging, neuroimaging data, neuroimaging |
uses: Python Programming Language is related to: Massachusetts General Hospital has parent organization: Harvard University; Cambridge; United States |
NIDA T90 DA022759; NIDA R90 DA023427; NIH Blueprint for Neuroscience Research ; NIBI ; NIBIB T32 EB1680; NCI U01 CA154601; NCI U24 CA180927; NCI U24 CA180918; NIBIB P41 EB015896 |
PMID:32578020 | Free, Available for download, Freely available | SCR_016911 | 2026-08-02 09:07:34 | 2 | ||||||||
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ADMIXTOOLS Resource Report Resource Website 100+ mentions |
ADMIXTOOLS (RRID:SCR_018495) | software toolkit, software resource | Software package that supports formal tests of whether admixture occurred, and makes it possible to infer admixture proportions and dates. | Formal test support, admixture, infer admixture proportion, infer admixture date, bio.tools |
is listed by: bio.tools is listed by: Debian has parent organization: Harvard University; Cambridge; United States |
U.S. National Science Foundation HOMINID ; NIGMS GM100233 |
PMID:22960212 | Free, Available for download, Freely available | biotools:admixtools | http://genetics.med.harvard.edu/reich/Reich_Lab/Software.html., https://bio.tools/admixtools | SCR_018495 | 2026-08-02 09:07:48 | 205 | ||||||
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PLINK/SEQ Resource Report Resource Website 50+ mentions |
PLINK/SEQ (RRID:SCR_013193) | software library, software toolkit, software resource, software application | An open-source C/C++ library for working with human genetic variation data. The specific focus is to provide a platform for analytic tool development for variation data from large-scale resequencing projects, particularly whole-exome and whole-genome studies. However, the library could in principle be applied to other types of genetic studies, including whole-genome association studies of common SNPs. (entry from Genetic Analysis Software) | gene, genetic, genomic, c/c++, r, macos, linux, bio.tools |
is listed by: Genetic Analysis Software is listed by: bio.tools is listed by: Debian is related to: PLINK has parent organization: Harvard University; Cambridge; United States |
Open unspecified license | nlx_154213, biotools:plink-seq | https://bio.tools/plink-seq | SCR_013193 | 2026-08-03 09:35:20 | 77 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
