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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Illumina Resource Report Resource Website 1000+ mentions |
Illumina (RRID:SCR_010233) | Illumina, Inc. | commercial organization | American company incorporated that develops, manufactures and markets integrated systems for the analysis of genetic variation and biological function. Provides a line of products and services that serve the sequencing, genotyping and gene expression and proteomics markets. Its headquarters are located in San Diego, California. | Commercial, organization, develope, manufacture, system, analysis, genetic, sequencing, genotyping, gene, expression, proteomic |
is related to: fermi-lite is related to: Illumina: NextSeq 2000 system is parent organization of: Strelka2 is parent organization of: Tk-GO is parent organization of: BaseSpace is parent organization of: Illumina: iSeq 100 Sequencing System |
nlx_156846, grid.185669.5, Wikidata: Q2068984, ISNI: 0000 0004 0507 3954 | https://ror.org/05k34t975 | SCR_010233 | Inc., Illumina | 2026-08-01 12:03:47 | 2340 | |||||||
|
Tk-GO Resource Report Resource Website |
Tk-GO (RRID:SCR_008855) | TkGO | software resource | Tk-GO is a GUI wrapping the basic functions of the GO AppHandle library from BDGP. GO terms are presented in an explorer-like browser, and behavior can be configured by altering Perl scripts. All available documentation is included in the download. Tk-GO uses the GO database (connects directly to the BDGP database by default) but is user-configurable. Platform: Windows compatible, Mac OS X compatible, Linux compatible, Unix compatible | browser, gene, ontology or annotation browser |
is listed by: Gene Ontology Tools is related to: Gene Ontology has parent organization: Illumina |
MIT License - Free for academic use | nlx_149133 | SCR_008855 | 2026-08-01 12:03:38 | 0 | ||||||||
|
Illumina: iSeq 100 Sequencing System Resource Report Resource Website 1+ mentions |
Illumina: iSeq 100 Sequencing System (RRID:SCR_016377) | instrument resource | Benchtop next-generation sequencer to sequence DNA and RNA. | Instrument, Equipment, Hardware, Sequencer, Illumina, Sequencing, RNA, DNA |
has parent organization: Illumina works with: SPAdes |
Restricted | https://drive.google.com/file/d/1U7-4WcU8rWYVYtkftlShvCofjPAeppR9/view?usp=drivesdk | Model_Number_iSeq 100, SCR_020125 | https://www.illumina.com/content/dam/illumina-marketing/documents/products/brochures/iseq-brochure-770-2017-038-web.pdf, https://www.illumina.com/content/dam/illumina/gcs/assembled-assets/marketing-literature/iseq-100-system-spec-sheet-m-gl-00456/iseq100-system-spec-sheet-m-gl-00456.pdf | SCR_016377 | iSeq 100, iSeq100 | 2026-08-01 12:05:38 | 4 | ||||||
|
fermi-lite Resource Report Resource Website 1+ mentions |
fermi-lite (RRID:SCR_016112) | alignment software, software application, standalone software, data processing software, algorithm resource, image analysis software, software resource | Standalone C library as well as a command-line tool for assembling Illumina short reads in small regions. It is an overlap-based assembler used in sequencing to retain heterozygous events and to assemble diploid regions for the purpose of variant calling. | assembling, short, read, small, region, sequencing, retain, heterozygous, event, diploid, variant, calling | is related to: Illumina | NHGRI U54 HG003037; NIGMS GM100233 |
PMID:26220959 | Free, Available for download | SCR_016112 | FermiKit, Fml-asm | 2026-08-03 09:36:16 | 4 | |||||||
|
BaseSpace Resource Report Resource Website 100+ mentions |
BaseSpace (RRID:SCR_011881) | BaseSpace | service resource | Cloud platform to be directly integrated in to the industry?s leading sequencing platforms, with no cumbersome and time consuming data transfer steps. | genomics, cloud computing |
is listed by: OMICtools has parent organization: Illumina |
OMICS_01213 | SCR_011881 | 2026-08-01 12:04:32 | 398 | |||||||||
|
Illumina: NextSeq 2000 system Resource Report Resource Website 10+ mentions |
Illumina: NextSeq 2000 system (RRID:SCR_023614) | instrument resource | Sequencing system supports range of methods such as exome sequencing, target enrichment, single-cell profiling. | Sequencing system, Illumina, instrument, equipment, USEDit | is related to: Illumina | Model_Number_NextSeq 2000 | SCR_023614 | 2026-08-01 12:08:10 | 22 | ||||||||||
|
Strelka2 Resource Report Resource Website 100+ mentions |
Strelka2 (RRID:SCR_005109) | software resource, source code | Software for somatic single nucleotide variant (SNV) and small indel detection from sequencing data of matched tumor-normal samples. Strelka2 germline and somatic small variant caller. | single nucleotide variant, indel, somatic snv, next-generation sequencing, bio.tools |
is listed by: Debian is listed by: bio.tools is listed by: SoftCite has parent organization: Illumina |
Cancer, Tumor, Normal | PMID:22581179 PMID:30013048 |
Free, Available for download, Freely available | biotools:strelka | https://bio.tools/strelka, https://sources.debian.org/src/strelka/ | http://bioinformatics.oxfordjournals.org/content/early/2012/05/10/bioinformatics.bts271.full.pdf | SCR_005109 | Strelka | 2026-08-03 09:32:47 | 261 |
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