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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Cold Spring Harbor Laboratory Resource Report Resource Website 1000+ mentions |
Cold Spring Harbor Laboratory (RRID:SCR_008326) | CSHL | nonprofit organization | Non profit, private research and education institution that performs molecular and genetic research used to generate methods for better diagnostics and treatments for cancer and neurological diseases. Research of cancer causing genes and their respective signaling pathways, mutations and structural variations of the human genome that could cause neurodevelopmental and neurodegenerative illnesses such as autism, schizophrenia, and Alzheimer's and Parkinson's diseases and also research in plant genetics and quantitative biology. | institution, education, genetic, alzheimer's, autism, biological, biotechnology, cancer, diagnostic, dna, genome, molecular, biology, neurodegenerative, neurodevelopmental, neurological, schizophrenia, signaling, structure |
is affiliated with: CyVerse is related to: GenomeScope is parent organization of: RMAP is parent organization of: Cold Spring Harbor Protocols: Collected Resources - Behavioral Assays is parent organization of: Genes to Cognition Online is parent organization of: Gramene is parent organization of: Exonic Splicing Enhancer Finder is parent organization of: bioRxiv is parent organization of: Brain Architecture Project is parent organization of: SCPD - Saccharomyces cerevisiae promoter database is parent organization of: AtProbe is parent organization of: FASTX-Toolkit is parent organization of: Chronux is parent organization of: Learn about SMA website is parent organization of: Transcriptional Regulatory Element Database is parent organization of: CSHL - Hannon Lab is parent organization of: Zebra Finch Song Learning Consortium is parent organization of: SpliceTrap is parent organization of: ESEfinder 3.0 is parent organization of: DNA From The Beginning: AN Animated Primer on the Basics of DNA, Genes, and Heredity is parent organization of: 3D Brain is parent organization of: Alta-Cyclic is parent organization of: WormBase is parent organization of: Reactome is parent organization of: ScanImage is parent organization of: FASTX-Toolkit is parent organization of: Cold Spring Harbor Laboratory Microscopy Shared Resource Core Facility |
nif-0000-24690, grid.225279.9, ISNI: 0000 0004 0387 3667, Wikidata: Q609768 | https://ror.org/02qz8b764 | SCR_008326 | CSHL | 2026-08-01 12:03:50 | 3333 | |||||||
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GenomeScope Resource Report Resource Website 500+ mentions |
GenomeScope (RRID:SCR_017014) | Genomescope | data processing software, software application, data analysis software, software resource, service resource | Open source software package for fast genome analysis from unassembled short reads. Used to estimate genome heterozygosity, repeat content, and size from sequencing reads using a kmer-based statistical approach. | genome, unassembled, sequenced, data, short, read, analysis, heterozygosity, repeat, content, size, kmer | is related to: Cold Spring Harbor Laboratory | NSF DBI 1350041; NSF IOS 1237880; NHGRI R01 HG006677 |
PMID:28369201 | Free, Freely available, | http://qb.cshl.edu/genomescope/ | SCR_017014 | 2026-08-05 10:46:48 | 651 | ||||||
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SpliceTrap Resource Report Resource Website 10+ mentions |
SpliceTrap (RRID:SCR_006728) | SpliceTrap | software resource | A statistic tool for quantifying exon inclusion ratios in paired-end RNA-seq data, with broad applications for the study of alternative splicing. SpliceTrap approaches to exon inclusion level estimation as a Bayesian inference problem. For every exon it quantifies the extent to which it is included, skipped or subjected to size variations due to alternative 3?/5? splice sites or Intron Retention. In addition, SpliceTrap can quantify alternative splicing within a single cellular condition, with no need of a background set of reads. | bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools is related to: Galaxy has parent organization: Cold Spring Harbor Laboratory |
PMID:21896509 | biotools:splicetrap, OMICS_01292 | https://bio.tools/splicetrap | SCR_006728 | 2026-08-01 12:03:18 | 16 | |||||||
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RMAP Resource Report Resource Website 1+ mentions |
RMAP (RRID:SCR_000695) | RMAP | software resource | Software for short-read mapping to accurately map reads from the next-generation sequencing technology. It can map reads with or without error probability information (quality scores) and supports paired-end reads or bisulfite-treated reads mapping. There is no limitaions on read widths or number of mismatches. RMAP can now map more than 8 million reads in an hour at full sensitivity to 2 mismatches. | next-generation sequencing, solexa |
is listed by: OMICtools has parent organization: Cold Spring Harbor Laboratory |
PMID:19736251 | OMICS_00681 | SCR_000695 | 2026-08-01 12:01:24 | 2 | ||||||||
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Cold Spring Harbor Protocols: Collected Resources - Behavioral Assays Resource Report Resource Website 100+ mentions |
Cold Spring Harbor Protocols: Collected Resources - Behavioral Assays (RRID:SCR_001697) | CSH Protocols - Behavioral Assays | data or information resource, bibliography | A bibliography of published Behavioral Assays by Cold Spring Harbor Protocols. Cold Spring Harbor Protocols is an interdisciplinary journal providing a definitive source of research methods in cell, developmental and molecular biology, genetics, bioinformatics, protein science, computational biology, immunology, neuroscience and imaging. Each monthly issue details multiple essential methods - a mix of cutting-edge and well-established techniques. Newly commissioned protocols and unsolicited submissions are supplemented with articles based on Cold Spring Harbor Laboratorys renowned courses and manuals. All protocols are up-to-date and presented in a consistent, easy-to-follow format. | genetics, bioinformatics, cell, computational biology, development, imaging, immunology, journal, molecular, neuroscience, protein, research, behavioral assay, behavior, ant, honeybee, learning, courtship, larvae, adult, stress, olfactory, aggression, sleep, movement, locomotor, circadian, feeding | has parent organization: Cold Spring Harbor Laboratory | Free, Freely Available | nif-0000-10198 | SCR_001697 | Cold Spring Harbor Protocols - Behavioral Assays | 2026-08-03 09:31:28 | 108 | |||||||
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Reactome Resource Report Resource Website 1000+ mentions |
Reactome (RRID:SCR_003485) | data or information resource, database, data analysis service, production service resource, service resource, analysis service resource | Collection of pathways and pathway annotations. The core unit of the Reactome data model is the reaction. Entities (nucleic acids, proteins, complexes and small molecules) participating in reactions form a network of biological interactions and are grouped into pathways (signaling, innate and acquired immune function, transcriptional regulation, translation, apoptosis and classical intermediary metabolism) . Provides website to navigate pathway knowledge and a suite of data analysis tools to support the pathway-based analysis of complex experimental and computational data sets. | pathway, interaction, reaction, nucleic acid, protein, complex, small molecule, signaling pathway, immune function, transcriptional regulation, translation, apoptosis, metabolism, ortholog, visualization, protein-protein interaction, web service, book, biomart, gold standard, bio.tools, FASEB list |
is used by: NIF Data Federation is used by: DisGeNET is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: WikiPathways is related to: Pathway Commons is related to: ConsensusPathDB is related to: FlyMine is related to: AmiGO is related to: PSICQUIC Registry is related to: Integrated Molecular Interaction Database is related to: NCBI BioSystems Database is related to: MOPED - Model Organism Protein Expression Database is related to: KOBAS is related to: PSICQUIC Registry is related to: Pathway Interaction Database is related to: hiPathDB - human integrated Pathway DB with facile visualization is related to: Algal Functional Annotation Tool has parent organization: Ontario Institute for Cancer Research has parent organization: Cold Spring Harbor Laboratory has parent organization: European Bioinformatics Institute has parent organization: New York University School of Medicine; New York; USA works with: PathwayMatcher |
Ontario Research Fund ; European Molecular Biology Laboratory ; NHGRI P41 HG003751; European Union FP6 ENFIN LSHG-CT-2005-518254; NIGMS GM080223; NIGMS R01 GM100039 |
PMID:21082427 PMID:21067998 |
Open source, Public, Freely available | r3d100010285, nif-0000-03390, biotools:reactome | https://bio.tools/reactome, https://doi.org/10.17616/R3V59P | SCR_003485 | Reactome Functional Interaction Network | 2026-08-05 10:43:51 | 4282 | |||||
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Brain Architecture Project Resource Report Resource Website 10+ mentions |
Brain Architecture Project (RRID:SCR_004283) | data or information resource, topical portal, portal | Evolving portal that will provide interactive tools and resources to allow researchers, clinicians, and students to discover, analyze, and visualize what is known about the brain's organization, and what the evidence is for that knowledge. This project has a current experimental focus: creating the first brainwide mesoscopic connectivity diagram in the mouse. Related efforts for the human brain currently focus on literature mining and an Online Brain Atlas Reconciliation Tool. The primary goal of the Brain Architecture Project is to assemble available knowledge about the structure of the nervous system, with an ultimate emphasis on the human CNS. Such information is currently scattered in research articles, textbooks, electronic databases and datasets, and even as samples on laboratory shelves. Pooling the knowledge across these heterogeneous materials - even simply getting to know what we know - is a complex challenge that requires an interdisciplinary approach and the contributions and support of the greater community. Their approach can be divided into 4 major thrusts: * Literature Curation and Text Mining * Computational Analysis * Resource Development * Experimental Efforts | central nervous system, connectivity, mapping, model, neuroanatomy, organism, post-mortem, structure, nervous system, structure, human, mouse, brain, zebra finch, addiction gene, addiction |
is used by: BICCN lists: Allen Institute for Brain Science lists: University of California at Los Angeles; California; USA is related to: Mouse Brain Architecture Project is related to: BICCN Anatomy and Morphology Project is related to: Allen Institute for Brain Science has parent organization: Cold Spring Harbor Laboratory is parent organization of: Human Brain Connectivity Database is parent organization of: OBART is parent organization of: Zebrafinch Brain Architecture Project is parent organization of: Mouse Brain Architecture Project |
W. M. Keck Foundation ; NIMH ; NIDA ; Crick-Clay Professorship in Biomathematics at CSHL ; Mathers Foundation ; Simons Foundation |
Free, Public | nlx_143664 | SCR_004283 | BrainArchitecture.org, BrainArchitecture | 2026-08-05 10:44:00 | 14 | |||||||
|
Zebra Finch Song Learning Consortium Resource Report Resource Website 1+ mentions |
Zebra Finch Song Learning Consortium (RRID:SCR_006356) | Zebra Finch Song Learning Consortium | data or information resource, topical portal, portal | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 29, 2016. Project to advance understanding of the neural mechanisms of vocal learning by providing a quantitative description of the relationship between physiological variables and vocal performance over the course of development in a songbird, the zebra finch. They propose to study vocal learning dynamically across neuronal and peripheral subsystems, using a novel collaborative approach that will harness the combined expertise of several investigators. Their proposed research model will 1) provide simultaneous measurements of acoustic, articulatory and electrophysiological data that will document the detailed dynamics of the vocal imitation process in a standardized learning paradigm; and 2) incorporate these measurements into a theoretical/computational framework that simultaneously provides a phenomenological description and attempts to elucidate the mechanistic basis of the learning process. | model organism, vocal learning, development, learning, brain, song |
is related to: Chronux has parent organization: Cold Spring Harbor Laboratory is parent organization of: Zebra Finch Brain Atlas |
NIH | THIS RESOURCE IS NO LONGER IN SERVICE | nlx_152090 | SCR_006356 | 2026-08-05 10:44:28 | 1 | |||||||
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3D Brain Resource Report Resource Website |
3D Brain (RRID:SCR_013138) | 3D Brain | data or information resource, training material, narrative resource, software application, software resource, mobile app | iPhone and iPad app that provides a good overview of the brain and its structures allowing you to rotate and zoom around 29 interactive structures with your touch screen. Discover how each brain region functions, what happens when it is injured, and how it is involved in mental illness. Each detailed structure comes with information on functions, disorders, brain damage, case studies, and links to modern research. Compatible with iPhone, iPod touch and iPad. Requires iOS 3.0 or later. | neuroanatomy, brain, gross neuroanatomy |
is related to: Genes to Cognition Online has parent organization: Cold Spring Harbor Laboratory |
The Dana Foundation ; Hewlett Foundation |
Free | nlx_152078 | SCR_013138 | 2026-08-05 10:45:52 | 0 | |||||||
|
ScanImage Resource Report Resource Website 500+ mentions |
ScanImage (RRID:SCR_014307) | data processing software, signal processing software, data acquisition software, software application, software resource | Open source software application for laser scanning microscopy, electrophysiology, laser scanning photostimulation, and other physiological methods focused on neurobiology. Used to control laser scanning microscopes without need for custom data acquisition hardware. Standard data acquisition boards are used to acquire data and control laser scanning. The tasks of signal integration and image processing are placed on the computer CPU. Multiple versions of ScanImage are available, each with their own features. | Laser, scanning, microscopy, electrophysiology, photostimulation, neurobiology, control, data, acquisition, BRAIN Initiative |
is recommended by: BRAIN Initiative has parent organization: Cold Spring Harbor Laboratory has parent organization: Northwestern University; Illinois; USA |
PMID:12801419 | Restricted | http://scanimage.vidriotechnologies.com/display/SIH/ScanImage+Home | SCR_014307 | Scan Image, ScanImage | 2026-08-05 10:46:08 | 810 | |||||||
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AtProbe Resource Report Resource Website |
AtProbe (RRID:SCR_005412) | AtProbe | data or information resource, database | Arabidopsis thaliana promoter binding element database that focuses on specific binding elements on known genes, found with experimental methods. | gene, binding element |
is listed by: OMICtools has parent organization: Cold Spring Harbor Laboratory |
Free | OMICS_00550 | SCR_005412 | AtProbe: Arabidopsis thaliana Promoter Binding Element Database, Arabidopsis thaliana Promoter Binding Element Database | 2026-08-05 10:44:16 | 0 | |||||||
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Alta-Cyclic Resource Report Resource Website |
Alta-Cyclic (RRID:SCR_013373) | Alta-Cyclic | software resource | An Illumina Genome-Analyzer (Solexa) base caller. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian has parent organization: Cold Spring Harbor Laboratory |
OMICS_01149, biotools:alta-cyclic | https://bio.tools/alta-cyclic | SCR_013373 | 2026-08-01 12:04:47 | 0 | ||||||||
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Learn about SMA website Resource Report Resource Website 1+ mentions |
Learn about SMA website (RRID:SCR_005592) | Learn About SMA | data or information resource, portal, video resource, disease-related portal, topical portal | Learn About SMA is a resource for spinal muscular atrophy (SMA) patients, families and researchers. The site includes stories of living with SMA and recent advances in the understanding and potential treatment of SMA. Learn About SMA is divided into five sections with video interviews, animations, and narrative. What is SMA? includes interviews with doctors and patients, plus an animation explaining the cause, inheritance and diagnosis of SMA. SMA Science provides an introduction to the genes and mechanisms involved with SMA, including 2-D and 3-D animations and interviews with Nobel Laureates. * In SMA Therapies doctors discuss current and potential treatments for SMA and a father describes the daily routine of physical therapies for his daughter, who has SMA. Antisense Therapy for SMA includes videos and animations to explain antisense therapy for SMA. In Living with SMA four SMA families describe daily routines, disease progression, children''s understanding of SMA, and grieving. | animation, rna splicing, spinal muscular atrophy | has parent organization: Cold Spring Harbor Laboratory | SMA Foundation ; Centers for Disease Control and Prevention 1H75DD000732-01 |
nlx_146217 | SCR_005592 | Learn About Spinal Muscular Atrophy | 2026-08-05 10:44:17 | 2 | |||||||
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CSHL - Hannon Lab Resource Report Resource Website 50+ mentions |
CSHL - Hannon Lab (RRID:SCR_005982) | Hannon Lab | data or information resource, portal, laboratory portal, organization portal | The Hannon laboratory comprises a broad spectrum of programs in small RNA biology, mammalian genetics and genomics. We study RNAi and related pathways in a wide variety of organisms to extract common themes that define both the mechanisms by which small RNAs act and the biological processes which they impact. Currently, we focus on microRNAs, endogenous siRNAs and piRNAs and their roles in gene regulation, cancer biology, stem cell biology and in defense of the genome against transposons. In collaboration with Steve Elledge (Harvard) and Scott Lowe (CSHL), we develop genome-wide shRNA tools for RNAi-based genetics in mammalian cells, and we are now producing similar collections of artificial microRNAs for Arabidopsis with Detlef Weigel (MPI), Dick McCombie (CSHL) and Rob Martienssen (CSHL) as part of the 2010 project (see 2010.cshl.edu). Our genomic efforts include the application of RNAi-based genetic screens to cancer biology and stem cells. We also make heavy use of next generation sequencing methodologies for probing small RNA populations, in part as a member of the ENCODE consortium (with Tom Gingeras, CSHL). Finally, we develop (with Dick McCombie) and apply focal re-sequencing methods for identifying disease relevant mutations, for probing the epigenetic landscape and for the study of human evolution. | rnai, rna, mammal, genetics, genomics, microrna, sirna, pirna, gene regulation, cancer biology, stem cell biology, defense, genome, transposon, cancer, stem cell | has parent organization: Cold Spring Harbor Laboratory | nlx_151354 | SCR_005982 | Cold Spring Harbor Laboratory - Hannon Lab | 2026-08-05 10:44:21 | 66 | ||||||||
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DNA From The Beginning: AN Animated Primer on the Basics of DNA, Genes, and Heredity Resource Report Resource Website |
DNA From The Beginning: AN Animated Primer on the Basics of DNA, Genes, and Heredity (RRID:SCR_008028) | DNAftB | data or information resource, training material, narrative resource, portal, video resource, topical portal, image collection | An animated primer on the basics of DNA, genes, and heredity organized around three key concepts: Classical Genetics, Molecules of Genetics, and Genetic Organization and Control. The science behind each concept is explained by: animation, image gallery, video interviews, problem, biographies, and links. | gene, genetic, chromosome, dna, heredity, human, protein, reverse transcriptase, transcription, translation, transposon, genetics, virus, rna, mutation | has parent organization: Cold Spring Harbor Laboratory | Josiah Macy Jr. Foundation | nif-0000-10208 | SCR_008028 | DNA from the Beginning | 2026-08-05 10:44:52 | 0 | |||||||
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bioRxiv Resource Report Resource Website 1000+ mentions |
bioRxiv (RRID:SCR_003933) | bioRxiv | community building portal, data or information resource, portal, database | A free archive and distribution service for unpublished preprints in the life sciences allowing authors to make their findings immediately available to the scientific community and receive feedback on draft manuscripts before they are submitted to journals. An article may be posted prior to, or concurrently with, submission to a journal but should not be posted if it has already been published. Once an article is published in a journal, bioRxiv will update the preprint with a link to the published version. | preprint, life science, bio.tools, FASEB list |
is used by: PrePubMed is listed by: LabWorm is listed by: bio.tools is listed by: Debian is related to: Overleaf has parent organization: Cold Spring Harbor Laboratory |
Free, Acknowledgement requested, The community can contribute to this resource | nlx_158302, biotools:bioRxiv | https://bio.tools/bioRxiv | SCR_003933 | bioRxiv - the preprint server for biology | 2026-08-05 10:43:57 | 1246 | ||||||
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SCPD - Saccharomyces cerevisiae promoter database Resource Report Resource Website 10+ mentions |
SCPD - Saccharomyces cerevisiae promoter database (RRID:SCR_004412) | SCPD | data or information resource, data repository, data analysis service, database, storage service resource, production service resource, service resource, analysis service resource | A promoter database of Saccharomyces cerevisiae. Users can explore the promoter regions of ~6000 genes and ORFs in yeast genome, annotate putative regulatory sites of all genes and ORFs, locate intergenic regions, and retrieve sequence of the promoter region. In regards to regulatory elements and transcription factors, users can provide information on transcriptionally related genes, browse matrix and consensus sequences, view the correlation between elements, observe binding affinity and expression, and look at genomewise distribution. SCPD also provides some simple but useful tools for promoter sequence analysis. Gene, consensus and matrix records may be submitted. | promoter, gene, genome, orf, transcription factor binding site, transcriptional start site, transcription factor |
is listed by: OMICtools has parent organization: Cold Spring Harbor Laboratory |
PMID:10487868 | OMICS_01867, nif-0000-03445 | SCR_004412 | SCPD - The Promoter Database of Saccharomyces cerevisiae | 2026-08-05 10:44:02 | 20 | |||||||
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Genes to Cognition Online Resource Report Resource Website 1+ mentions |
Genes to Cognition Online (RRID:SCR_002746) | G2C | data or information resource, training material, narrative resource, portal, software application, topical portal, software resource, blog | Genes to Cognition (G2C) Online is about modern neuroscience. It focuses on cognitive disorders, cognitive processes, and research approaches. Use the dynamic network maps to explore our library of 750+ unique items. Or, use the linear Selected Items menu on top of each map to tour selected content. Read the G2C blog, use simple mapper, or the 3-D brain, an interactive model of the brain. Disorders included in this site: ADHD, Alzheimer's Disease, Autism, Bipolar Disorder, Depression, Schizophrenia Cognitive Processes include: Attention, Language, Learning and Memory, Perception, and Thinking Research Approaches include: Bioinformatics, Ethics, Gene Finding, Model systems, Neuroimaging, Psychology. Navigation: Interact with the dynamic Networks Maps to explore the full catalog of content. Roll-over a node on the map for a preview and click to open the content. Move on to other content by returning to the network map. Each node you visit on the map gets flagged. Follow the Selected Items Subway Line for an overview of a topic. Roll-over a subway node for a preview and click to open the content. Other Features: Most content items include links to Related Items, which allow you to explore further. The Glossary includes over 300 neuroscience keywords. Search for content using keywords or id number. Select a preferred network map to view the content in context. Open/close the History at the lower left to view visited content. Your history is stored until you clear it. Simple Mapper - We developed Simple Mapper to power this web site on the brain. Now, you can use it to organize what comes out of yours! With Simple Mapper create and save concept maps, network diagrams, or flowcharts for personal use or to share with others. 3-D Brain - The G2C Brain is an interactive 3-D model of the brain, with 29 structures that can be rotated in three-dimensional space. Each structure has information on brain disorders, brain damage, case studies, and links to modern neuroscience research. Ideal for students, researchers, and educators in psychology and biology. Also available for download: 3D Brain App for iPhone and iPod Touch! | gene, cognition, cognitive, disorder, map, network, neuroscience, process, research, biochemical, cell, brain anatomy, environment, k-12 |
is related to: 3D Brain has parent organization: Cold Spring Harbor Laboratory |
The Dana Foundation ; William and Flora Hewlett Foundation |
Free, Freely available | nif-0000-25051 | SCR_002746 | G2C Online | 2026-08-05 10:43:40 | 6 | ||||||
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Gramene Resource Report Resource Website 500+ mentions |
Gramene (RRID:SCR_002829) | GR | data or information resource, database | Curated, open-source, integrated data resource for comparative functional genomics in crops and model plant species to facilitate the study of cross-species comparisons using information generated from projects supported by public funds. It currently hosts annotated whole genomes in over two dozen plant species and partial assemblies for almost a dozen wild rice species in the Ensembl browser, genetic and physical maps with genes, ESTs and QTLs locations, genetic diversity data sets, structure-function analysis of proteins, plant pathways databases (BioCyc and Plant Reactome platforms), and descriptions of phenotypic traits and mutations. The web-based displays for phenotypes include the Genes and Quantitative Trait Loci (QTL) modules. Sequence based relationships are displayed in the Genomes module using the genome browser adapted from Ensembl, in the Maps module using the comparative map viewer (CMap) from GMOD, and in the Proteins module displays. BLAST is used to search for similar sequences. Literature supporting all the above data is organized in the Literature database. In addition, Gramene now hosts a variety of web services including a Distributed Annotation Server (DAS), BLAST and a public MySQL database. Twice a year, Gramene releases a major build of the database and makes interim releases to correct errors or to make important updates to software and/or data. Additionally you can access Gramene through an FTP site. | crop, plant genome, genetic, blast, gene, genome, genetic diversity, pathway, protein, marker, quantitative trait locus, comparative map, phenotype, genomics, physiology, comparative, grain, expressed sequence tag, trait, mutation, environment, taxonomy, web service, bio.tools, FASEB list |
is used by: NIF Data Federation is listed by: re3data.org is listed by: bio.tools is listed by: Debian is related to: AmiGO is related to: Gene Ontology is related to: Plant Ontology is related to: Trait Ontology is related to: EnvO is related to: BioCyc has parent organization: Cold Spring Harbor Laboratory has parent organization: Cornell University; New York; USA is parent organization of: Trait Ontology is parent organization of: Plant Environmental Conditions is parent organization of: Plant Trait Ontology is parent organization of: Cereal Plant Development Ontology is parent organization of: Cereal Plant Gross Anatomy Ontology |
USDA IFAFS 00-52100-9622; USDA 58-1907-0-041; USDA 1907-21000-030; NSF 0321685; NSF 0703908; NSF 0851652 |
PMID:21076153 PMID:17984077 PMID:16381966 |
Free, Freely available | r3d100010856, nif-0000-02926, nlx_65829, biotools:gramene | https://bio.tools/gramene, https://doi.org/10.17616/R3GG7M | SCR_002829 | GR PROTEIN, RiceGenes, GR REF, GR GENE, Gramene: A Resource for Comparative Grass Genomics, GR QTL | 2026-08-05 10:43:42 | 778 | ||||
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WormBase Resource Report Resource Website 1000+ mentions |
WormBase (RRID:SCR_003098) | WB, WB REF, WP | data or information resource, data repository, database, storage service resource, service resource | Central data repository for nematode biology including complete genomic sequence, gene predictions and orthology assignments from range of related nematodes.Data concerning genetics, genomics and biology of C. elegans and related nematodes. Derived from initial ACeDB database of C. elegans genetic and sequence information, WormBase includes genomic, anatomical and functional information of C. elegans, other Caenorhabditis species and other nematodes. Maintains public FTP site where researchers can find many commonly requested files and datasets, WormBase software and prepackaged databases. | RIN, Resource Information Network, catalog, database, blast, genomic sequence, gene prediction, orthology assignment, gene function, ortholog, roundworm, geneotype, phenotype, gene mapping, genomics, gene expression, transposon family, c elegans, wormmart, FASEB list, RRID Community Authority |
uses: InterMOD is used by: NIF Data Federation is used by: Resource Identification Portal is used by: PhenoGO is used by: Integrated Animals is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: OMICtools is listed by: re3data.org is listed by: InterMOD is listed by: Resource Information Network is affiliated with: InterMOD is related to: AmiGO is related to: GBrowse is related to: Textpresso is related to: Expression Patterns for C. elegans promoter GFP fusions is related to: C. elegans Gene Knockout Consortium is related to: NIH Data Sharing Repositories is related to: UniParc at the EBI is related to: UniParc is related to: Integrated Manually Extracted Annotation is related to: PhenoGO has parent organization: Cold Spring Harbor Laboratory has parent organization: Washington University in St. Louis; Missouri; USA has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom is parent organization of: C. elegans Development Vocabulary is parent organization of: C. elegans Gross Anatomy Vocabulary is parent organization of: C. elegans Phenotype Vocabulary is parent organization of: OpenWorm works with: A plasmid Editor is organization facet of: Alliance of Genome Resources |
NHGRI ; NIH Blueprint for Neuroscience Research ; MRC ; BBSRC ; NHGRI U41 HG002223; NIHGRI P41 HG02223 |
PMID:24194605 PMID:19910365 PMID:17991679 PMID:15608221 |
nif-0000-00053, OMICS_01664, r3d100010424 | http://www.wormbase.org/#01-23-6, https://doi.org/10.17616/R3089Z | SCR_003098 | , WB, Worm Base, WB REF, WP | 2026-08-05 10:43:46 | 1825 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
