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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.

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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
GBIF - Global Biodiversity Information Facility
 
Resource Report
Resource Website
1000+ mentions
GBIF - Global Biodiversity Information Facility (RRID:SCR_005904) GBIF data set, portal, organization portal, data or information resource The Global Biodiversity Information Facility (GBIF) was established by governments in 2001 to encourage free and open access to biodiversity data, via the Internet. Through a global network of countries and organizations, GBIF promotes and facilitates the mobilization, access, discovery and use of information about the occurrence of organisms over time and across the planet. GBIF provides three core services and products: # An information infrastructure an Internet-based index of a globally distributed network of interoperable databases that contain primary biodiversity data information on museum specimens, field observations of plants and animals in nature, and results from experiments so that data holders across the world can access and share them # Community-developed tools, standards and protocols the tools data providers need to format and share their data # Capacity-building the training, access to international experts and mentoring programs that national and regional institutions need to become part of a decentralized network of biodiversity information facilities. GBIF and its many partners work to mobilize the data, and to improve search mechanisms, data and metadata standards, web services, and the other components of an Internet-based information infrastructure for biodiversity. GBIF makes available data that are shared by hundreds of data publishers from around the world. These data are shared according to the GBIF Data Use Agreement, which includes the provision that users of any data accessed through or retrieved via the GBIF Portal will always give credit to the original data publishers. * Explore Species: Find data for a species or other group of organisms. Information on species and other groups of plants, animals, fungi and micro-organisms, including species occurrence records, as well as classifications and scientific and common names. * Explore Countries: Find data on the species recorded in a particular country, territory or island. Information on the species recorded in each country, including records shared by publishers from throughout the GBIF network. * Explore Datasets: Find data from a data publisher, dataset or data network. Information on the data publishers, datasets and data networks that share data through GBIF, including summary information on 10028 datasets from 419 data publishers. biodiversity, organism, species, country, FASEB list is listed by: DataCite
is listed by: re3data.org
is listed by: FAIRsharing
is related to: Pensoft
is related to: Australian Antarctic Data Centre
is parent organization of: Atlas of Living Australia
Free and open access - users of any data accessed through or retrieved via the GBIF Portal will always give credit to the original data publishers. DOI:10.15469, DOI:10.26161, DOI:10.17616/R3J014, DOI:10.15468, DOI:10.35035, nlx_149475, DOI:10.25504/FAIRsharing.zv11j3 https://doi.org/10.17616/R3J014, https://doi.org/10.17616/r3J014, https://doi.org/10.15469/, https://doi.org/10.15468/, https://doi.org/10.26161/, https://doi.org/10.35035/, https://dx.doi.org/10.15469/, https://dx.doi.org/10.15468/, https://doi.org/10.26161, https://dx.doi.org/10.35035/, https://fairsharing.org/10.25504/FAIRsharing.zv11j3 SCR_005904 GBIF Data Portal, Global Biodiversity Information Facility 2026-08-04 09:41:28 1723
Atlas of Living Australia
 
Resource Report
Resource Website
100+ mentions
Atlas of Living Australia (RRID:SCR_006467) ALA database, data or information resource Online repository of information about Australian plants, animals, and fungi. Development started in 2006. The Commonwealth Scientific and Industrial Research Organisation is organisation significantly involved in development of ALA. data sharing, biodiversity, image, photograph, dna, conservation, natural resource, literature, nomenclature, australia, morphology, life stage, stage, behavior, reproduction, habitat, genetic, region, species, portal, data set, data analysis service, metadata standard, web service, image collection, FASEB list is listed by: re3data.org
is listed by: DataCite
is listed by: FAIRsharing
has parent organization: CSIRO
has parent organization: GBIF - Global Biodiversity Information Facility
Creative Commons Attribution License, v3 Australia License, Provider content may be covered by other Terms of Use, Http://www.ala.org.au/about-the-atlas/terms-of-use/ nlx_152016, DOI:10.26197, DOI:10.25504/FAIRsharing.2f66da, r3d100010918, DOI:10.17616/R3VG9S https://doi.org/10.26197, https://dx.doi.org/10.26197, http://doi.org/10.17616/R3VG9S, https://fairsharing.org/10.25504/FAIRsharing.2f66da, https://doi.org/10.17616/R3VG9S SCR_006467 2026-08-04 09:41:37 147
Australian Antarctic Data Centre
 
Resource Report
Resource Website
10+ mentions
Australian Antarctic Data Centre (RRID:SCR_006320) AADC portal, organization portal, data or information resource Centre is committed to free and open exchange of scientific data and is working collaboratively with international centres, networks and scientists to build sustainable polar data commons. Delivers professional data management and analysis services to Antarctic scientists and environmental managers. Supports logistical operations of Australian Antarctic Program. Data held in AADC data stores are qualified with metadata and discoverable through Catalogue of Australian Antarctic and Sub-antarctic Metadata (CAASM http://data.aad.gov.au/aadc/metadata) or through customized applications accessible via the website. All data is archived in AADC to permit its re-use. AADC has capability to create DOIs for datasets. Australian Antarctic Program, exchange of scientific data, polar data commons, Catalogue of Australian Antarctic and Sub-antarctic Metadata, DOIs for datasets is listed by: DataCite
is listed by: re3data.org
is related to: GBIF - Global Biodiversity Information Facility
nlx_152019 SCR_006320 Australian Antarctic Data Center 2026-08-04 09:41:34 12
re3data.org
 
Resource Report
Resource Website
50+ mentions
re3data.org (RRID:SCR_006782) re3data.org registry, database, data or information resource Global registry of research data repositories from all academic disciplines that allows the easy identification of appropriate research data repositories, both for data producers and users. Information icons display principal attributes of a repository that can be used for multi-faceted searches. Repository operators can suggest their infrastructures to be listed via a simple application form. A repository is indexed when the minimum requirements are met, i.e. mode of access to the data and repository, as well as the terms of use. vocabulary, registry, metadata standard, data sharing, FASEB list lists: Academic Seismic Portal at UTIG
lists: National Addiction and HIV Data Archive Program (NAHDAP)
lists: Alaska Climate Research Center
lists: MINT
lists: Internet Archive
lists: MatrixDB
lists: Animal QTLdb
lists: MPIDB
lists: BeetleBase
lists: Conserved Domain Database
lists: NeuroMorpho.Org
lists: Marine Geoscience Data System
lists: Cell Centered Database
lists: dbMHC
lists: Human Mortality Database
lists: UniProt
lists: Ligand-Gated Ion Channel Database
lists: EcoGene
lists: NCBI Genome
lists: ESTHER
lists: Genomes Online Database
lists: Gramene
lists: American FactFinder
lists: Human Proteinpedia
lists: IMGT/HLA
lists: Influenza Virus Resource
lists: DOE Joint Genome Institute
lists: MetaCrop
lists: ISPS Data Archive
lists: MorphBank
lists: miRBase
lists: Inter-university Consortium for Political and Social Research (ICPSR)
lists: Mouse Phenome Database (MPD)
lists: MorphoBank
lists: dbVar
lists: Open Science Framework
lists: TalkBank
lists: Nucleic Acid Database
lists: NCBI Taxonomy
lists: NCBI Protein Database
lists: PHI-base
lists: Alberta Geological Survey
lists: Protein Clusters
lists: Reactome
lists: Cell Image Library (CIL)
lists: eyeMoviePedia
lists: ALLBUS - German General Social Survey
lists: TPA
lists: Agency for Healthcare Research and Quality
lists: Alaska Satellite Facility
lists: Current German Weather Stations
lists: NCBI Structure
lists: BOLD
lists: PDBe - Protein Data Bank in Europe
lists: FishBase
lists: Nucleotide database
lists: NCBI BioSystems Database
lists: SGD
lists: Data.gov
lists: RHEA
lists: European Bioinformatics Institute
lists: NCBI Probe
lists: NCBI Nucleotide
lists: Database of Genomic Variants Archive (DGVa)
lists: NCBI Popset
lists: Whole Brain Atlas
lists: EMAGE Gene Expression Database
lists: Limited Access Datasets From NIMH Clinical Trials
lists: Tree of Life Web Project
lists: TreeBASE
lists: UCSC Genome Browser
lists: UniPROBE
lists: Crystallography Open Database (COD)
lists: National Archive of Computerized Data on Aging (NACDA)
lists: EOL - Encyclopedia of Life
lists: VectorBase
lists: caArray
lists: NCBI Epigenomics
lists: GWAS Central
lists: QTL Archive
lists: Proteome Commons
lists: XNAT Central
lists: 4TU.Datacentrum
lists: Amazon Web Services Public Data Sets
lists: ChemSpider
lists: DataStaR
lists: Rat Genome Database (RGD)
lists: Atlas of Living Australia
lists: Electron Microscopy Data Bank at PDBe (MSD-EBI)
lists: Phytozome
lists: FlyBase
lists: MaizeGDB
lists: Tuberculosis Database
lists: InterPro
lists: UNAVCO
lists: The Human Protein Atlas
lists: InnateDB
lists: UniSTS
lists: Launchpad
lists: Surveillance Epidemiology and End Results
lists: FAOSTAT
lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database
lists: HIstome: The Histone Infobase
lists: HPRD - Human Protein Reference Database
lists: Biological General Repository for Interaction Datasets (BioGRID)
lists: INFEVERS
lists: Reciprocal Net
lists: Africa Centre for Health and Population Studies
lists: BeeBase
lists: Biodiversity Heritage Library
lists: Databrary
lists: ACADIS Gateway
lists: ACEpepDB
lists: AIMS Data Centre
lists: ALADDIN
lists: ASTER
lists: Access to Archival Databases
lists: AidData
lists: Alaska Ocean Observing System
lists: J. Craig Venter Institute
lists: Wellcome Trust Sanger Institute; Hinxton; United Kingdom
lists: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
lists: myExperiment
lists: BioModels
lists: Addgene
lists: Antarctic and Southern Ocean Data Portal
lists: OpenTopography
lists: National Snow and Ice Data Center
lists: Biological Magnetic Resonance Data Bank (BMRB)
lists: dbSNP
lists: Ensembl
lists: DNA DataBank of Japan (DDBJ)
lists: Entrez Gene
lists: Zebrafish Information Network (ZFIN)
lists: GitHub
lists: DrugBank
lists: NCBI database of Genotypes and Phenotypes (dbGap)
lists: Gene Expression Nervous System Atlas
lists: SumsDB
lists: GenBank
lists: GermOnline
lists: HGNC
lists: Greengenes
lists: Neuroscience Information Framework
lists: HomoloGene
lists: ArrayExpress
lists: JASPAR
lists: WormBase
lists: Database of Interacting Proteins (DIP)
lists: EMDataResource.org
lists: ResearchCompendia
lists: Proteomics Identifications (PRIDE)
lists: RefSeq
lists: FAIRsharing
lists: PubChem
lists: FigShare
lists: UniGene
lists: NIMH Data Archive
lists: TAIR
lists: NCBI BioProject
lists: SMD
lists: OpenNeuro
lists: SoyBase
lists: Beta Cell Biology Consortium
lists: Biomedical Informatics Research Network
lists: Dryad Digital Repository
lists: Atlantic Canada Conservation Data Centre
lists: Agri-environmental Research Data Repository
lists: Australian Antarctic Data Centre
lists: Antibody Registry
lists: Mouse Genome Informatics (MGI)
lists: European Nucleotide Archive (ENA)
lists: NIDDK Central Repository
lists: GigaScience
lists: PeptideAtlas
lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation
lists: IntAct
lists: fMRI Data Center
lists: Gene Expression Omnibus
lists: Data and Specimen Hub (NICHD DASH)
lists: NIDA Data Share
lists: The NINDS Human Cell and Data Repository (NHCDR)
lists: Microphysiology Systems Database
lists: Dataverse Network Project
lists: Mendeley
lists: Vivli
lists: Metabolomics Workbench
lists: Qualitative Data Repository
lists: Protocols.io
lists: ZENODO
lists: STRENDA
lists: Code Ocean
lists: Brain Image Library
lists: German Collection of Microorganisms and Cell Cultures
lists: INPTDAT
lists: DataONE
lists: GBIF - Global Biodiversity Information Facility
lists: Lamont-Doherty Core Repository
lists: CaltechDATA
lists: Synapse
lists: Incorporated Research Institutions for Seismology
lists: Cancer Imaging Archive (TCIA)
lists: Mendeley Data
lists: UK Data Archive
lists: GigaDB
lists: PhysioNet
lists: Project Data Sphere
lists: Influenza Research Database (IRD)
lists: Simtk.org
lists: ResearchGate
lists: Virus Pathogen Resource (ViPR)
lists: Cambridge Structural Data Base
lists: 4TU.ResearchData
lists: Aperta Turkey Open Archive
lists: Polar Data Catalogue
lists: Arch
lists: Australian Data Archive
lists: Australian Ocean Data Network
lists: Barbara A. Mikulski Archive for Space Telescopes
lists: Aston Data Explorer
lists: Birkbeck Research Data
lists: B2SHARE Eudat
lists: BioHeritage National Science Challenge Data Repository
lists: Bolin Centre Database
lists: Brown Digital Repository
is listed by: FORCE11
is related to: U.S. Census Bureau
is related to: Rat Genome Database (RGD)
is related to: ResearchCompendia
has parent organization: Humboldt University of Berlin; Berlin; Germany
has parent organization: Karlsruhe Institute of Technology; Karlsruhe; Germany
DFG The community can contribute to this resource nlx_152589 SCR_006782 Registry of Research Data Repositories, re3data.org: Registry of Research Data Repositories, re3data 2026-08-04 09:41:40 76
DataCite
 
Resource Report
Resource Website
50+ mentions
DataCite (RRID:SCR_004139) nonprofit organization Platform for storing, finding and accessing data that provides a service for data centres to mint DOIs and store associated metadata. Their goals are to establish easier access to scientific research data on the Internet, increase acceptance of research data as legitimate, citable contributions to the scientific record and support data archiving that will permit results to be verified and re-purposed for future study. DataCite is global, with member institutions offering services and advice directly where they are needed by the researchers. While datasets are shared and accessed globally, researchers work within national funding and organizational frameworks. It therefore operates globally, with national representation. The DataCite Metadata Scheme is a list of core metadata properties chosen for the accurate and consistent identification of data for citation and retrieval purposes, along with recommended use instructions. data citation, data archiving is used by: California Digital Library
is used by: Office of Scientific and Technical Information
is used by: BGI; Shenzhen; China
is used by: ETH Zurich; Zurich; Switzerland
is used by: French National Center for Scientific Research
is used by: Inter-university Consortium for Political and Social Research (ICPSR)
is used by: University of Tartu; Tartu; Estonia
is used by: Open Data Commons for Traumatic Brain Injury
is used by: SPARC Portal
is used by: Pacific Northwest National Laboratory DataHub: Scientific Data Repository
is used by: COVID-19 Data Repository
is used by: NIDDK Central Repository
is used by: Marine Geoscience Data System
is used by: National Addiction and HIV Data Archive Program (NAHDAP)
is used by: Coherent X-Ray Imaging Data Bank (CXIDB)
lists: Biological Magnetic Resonance Data Bank (BMRB)
lists: ArrayExpress
lists: GigaDB
lists: Atlantic Canada Conservation Data Centre
lists: Agri-environmental Research Data Repository
lists: Australian Antarctic Data Centre
lists: TARDIS
lists: BioModels
lists: Addgene
lists: BOLD
lists: FigShare
lists: Standards-based Infrastructure with Distributed Resources
lists: TAIR
lists: Biomedical Informatics Research Network
lists: 4TU.Datacentrum
lists: Amazon Web Services Public Data Sets
lists: Atlas of Living Australia
lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database
lists: Biological General Repository for Interaction Datasets (BioGRID)
lists: Africa Centre for Health and Population Studies
lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC)
lists: STRENDA
lists: Brain Image Library
lists: CaltechDATA
lists: Code Ocean
lists: CoMSES Net
lists: DataONE
lists: DANS
lists: GBIF - Global Biodiversity Information Facility
lists: German Collection of Microorganisms and Cell Cultures
lists: Distributed Archives for Neurophysiology Data Integration
lists: INPTDAT
lists: Mendeley Data
lists: Lamont-Doherty Core Repository
lists: MorphoBank
lists: Incorporated Research Institutions for Seismology
lists: PhysioNet
lists: Open Science Framework
lists: Simtk.org
lists: Synapse
lists: OpenNeuro
lists: Vivli
lists: Cancer Imaging Archive (TCIA)
lists: UK Data Archive
lists: Dryad Digital Repository
lists: Influenza Research Database (IRD)
lists: ZENODO
lists: National Snow and Ice Data Center
lists: ResearchGate
lists: Project Data Sphere
lists: Qualitative Data Repository
lists: Virus Pathogen Resource (ViPR)
lists: Cambridge Structural Data Base
lists: 4TU.ResearchData
lists: Aperta Turkey Open Archive
lists: Arch
lists: Aston Data Explorer
lists: Antarctic Meteorological Research and Data Center Repository
lists: Polar Data Catalogue
lists: Aston Publications Explorer
lists: Astrobiology Habitable Environments Database
lists: Australian Ocean Data Network
lists: B2SHARE Eudat
lists: Barbara A. Mikulski Archive for Space Telescopes
lists: Australian Data Archive
lists: BioHeritage National Science Challenge Data Repository
lists: Abertay University Datasets
lists: Birkbeck Research Data
lists: BioData Management Portal
lists: Bolin Centre Database
lists: BRAIN Commons
lists: SCAR Antarctic Biodiversity Portal
lists: Brown Digital Repository
lists: Canadian Polar Data Network
lists: Berkeley Seismological Laboratory
lists: Biocode Commons
lists: DMPTool
lists: California Digital Library
lists: eScholarship
lists: Center for Research in Biological Systems
lists: CCHDO
lists: California Coastal Atlas
lists: Comprehensive Everglades Restoration Plan
lists: CRCNS
lists: DataMares
lists: Drug Design Data Resource
lists: EarthCube
lists: Geotechnical Extreme Events Reconnaissance
lists: iDASH
lists: Kavli Institute for Theoretical Physics Online Talks
lists: EarthRef
lists: Engineering Biology Research Consortium
lists: Lawrence Berkeley National Laboratory
lists: LBNL OpenMSI
lists: National Center for Ecological Analysis and Synthesis
lists: Nightingale Open Science
lists: Marine and Coastal Research Institute of Columbia; Santa Marta; Colombia
lists: Open Tree of Life
lists: Open Data Commons for Spinal Cord Injury
lists: Arctic Data Center
lists: Ocean Protection Council
lists: Open Context
lists: Partnership for Interdisciplinary Studies of Coastal Oceans
lists: Triton Shared Computing Cluster
lists: OpenTopography
lists: UC Berkeley Research IT
lists: Center for Effective Global Action
lists: SDSC Center for Applied Internet Data Analysis
lists: Project Production Systems Laboratory
lists: UC Davis eScholarship
lists: UC Davis Social Science Data Service
lists: University of California Press
lists: UC Natural Reserve System
lists: University of California at Riverside; California; USA
lists: University of California at San Diego; California; USA
lists: UC Medical Humanities Consortium
lists: Coastal Data Information Program
lists: UCSC Library
lists: University of California at Santa Barbara; California; USA
lists: University of California at Los Angeles; California; USA
lists: Center for Computational Mass Spectrometry
lists: Metabolomics Workbench
lists: UCSD WIFIRE
lists: UC Davis Library
lists: Network Data Exchange (NDEx)
is listed by: FORCE11
is affiliated with: RAiD
is related to: Redivis
is parent organization of: DataCite Ontology
is parent organization of: ODIN
Public grid.475826.a, nlx_16255, Wikidata: Q821542 https://ror.org/04wxnsj81 SCR_004139 datacite.org, Data Cite 2026-08-01 12:02:31 55
Pensoft
 
Resource Report
Resource Website
1+ mentions
Pensoft (RRID:SCR_005903) Pensoft publisher Publisher that specializes in academic and professional book and journal publishing, mostly in the field of biodiversity science and natural history. They are academic publishers based in Eastern Europe with more than 600 books and e-books published so far. They largely perform their activities in English, with only a minor fraction of publications being in French, German, Russian and Bulgarian. Pensoft is also involved as a publisher in several European Union Fp5, FP6 and FP7 projects where they have specialized in dissemination, communication and publishing; as well as in creating and maintaining websites and Internal Communication Platforms (ICP), designing of logos, flyers, leaflets and posters. Open-access journals include ZooKeys, BioRisk, and PhytoKeys. ZooKeys is a journal in biodiversity science and has implemented several innovations in digital publishing and dissemination including developing and implementing an XML-based submission, editorial, publication and dissemination workflow. The TRIADA platform, for publishing, disseminating and marketing of printed books, e-books and open access journals, provides a linked environment for content, authors, reviewers, editors and customers through four independent classifications (taxonomic, subject, geographical, and geological time scale) as well through tagging and semantic mark-up. TRIADA uses a one-time registration process which allows users to submit, review or edit manuscripts, to subscribe for E-mail and RSS alerts, and to purchase Pensoft''s products. Web services: Metadata and journal content can be harvested. biodiversity science, natural history, biodiversity, semantic enhancement, open access, publication, web service, journal is listed by: FORCE11
is related to: GBIF - Global Biodiversity Information Facility
is related to: EOL - Encyclopedia of Life
Creative Commons Attribution License, The community can contribute to this resource nlx_149474 SCR_005903 Pensoft Publishers 2026-08-01 12:03:03 4
FAIRsharing
 
Resource Report
Resource Website
50+ mentions
FAIRsharing (RRID:SCR_004177) database, data or information resource Web-based, searchable portal of three interlinked registries, containing both in-house and crowdsourced manually curated descriptions of standards, databases and data policies, combined with integrated view across all three types of resource. By registering your resource on FAIRsharing, you gain credit for your work, increase its visibility outside of your direct domain, reduce potential for unnecessary reinvention and proliferation of standards and databases. Metadata standard, ontology, data sharing, data policy, data standard is used by: Integrated Datasets
lists: Brain Imaging Data Structure (BIDs)
lists: EBRAINS
lists: Code Ocean
lists: Distributed Archives for Neurophysiology Data Integration
lists: CaltechDATA
lists: DataONE
lists: GBIF - Global Biodiversity Information Facility
lists: Incorporated Research Institutions for Seismology
lists: Mendeley Data
lists: Open Science Framework
lists: MorphoBank
lists: PhysioNet
lists: GigaDB
lists: INPTDAT
lists: OpenNeuro
lists: Cancer Imaging Archive (TCIA)
lists: Qualitative Data Repository
lists: UK Data Archive
lists: Dryad Digital Repository
lists: BOLD
lists: ZENODO
lists: Vivli
lists: FigShare
lists: Influenza Research Database (IRD)
lists: Cambridge Structural Data Base
lists: National Snow and Ice Data Center
lists: Virus Pathogen Resource (ViPR)
lists: 4TU.ResearchData
lists: Australian Data Archive
lists: Atlas of Living Australia
lists: Australian Ocean Data Network
lists: Arch
lists: Bolin Centre Database
lists: B2SHARE Eudat
lists: Connectome Workbench
is listed by: FORCE11
is listed by: re3data.org
is related to: bioDBcore
is related to: Standards-based Infrastructure with Distributed Resources
is related to: Genomic Standards Consortium
is related to: ELIXIR Tools and Data Services Registry
is related to: NCI Imaging Data Commons
is related to: Cancer Research Data Commons
is related to: SciLifeLab Data Platform
is related to: NiPoppy
has parent organization: University of Oxford; Oxford; United Kingdom
is parent organization of: Minimum Information for Biological and Biomedical Investigations
is parent organization of: FAIRSharing Catalogue of Standards
Free, freely available r3d100011250, nlx_143602, SCR_017615 http://www.force11.org/node/4701, https://fairsharing.org/, https://doi.org/10.17616/R3C621 http://www.biosharing.org/ SCR_004177 BioSharing 2026-08-04 09:41:04 50

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