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SciCrunch Registry is a curated repository of scientific resources, with a focus on biomedical resources, including tools, databases, and core facilities - visit SciCrunch to register your resource.
| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Mendeley Resource Report Resource Website 1000+ mentions |
Mendeley (RRID:SCR_002750) | Mendeley | data access protocol, data or information resource, database, software resource, web service | Web application as free reference manager and academic social network to organize your research, collaborate with others online, and discover the latest research. Automatically generate bibliographies, Collaborate easily with other researchers online, Easily import papers from other research software, Find relevant papers based on what you're reading, Access your papers from anywhere online, Read papers on the go with the iPhone app. The software, Mendeley Desktop, offers: * Automatic extraction of document details * Efficient management of your papers * Sharing and synchronization of your library (or parts of it) * Additional features: A plug-in for citing your articles in Microsoft Word, OCR (image-to-text conversion, so you can full-text search all your scanned PDFs), etc The website, Mendeley Web, complements Mendeley Desktop by offering these features: * An online back up of your library * Statistics of all things interesting * A research network that allows you to keep track of your colleagues' publications, conference participations, awards etc * A recommendation engine for papers that might interest you. | journal, collaborate, organize, bibliography, mac, windows, linux |
uses: Citation Style Language is used by: Nowomics is used by: NIH Heal Project is listed by: FORCE11 is listed by: re3data.org is related to: Paper Critic is related to: ImpactStory is related to: Overleaf is parent organization of: CitationStyles is parent organization of: Mendeley Data |
Free | nif-0000-24120 | SCR_002750 | , Mendeley Data, Mendeley Research Network, Mendeley | 2026-08-21 12:36:48 | 2439 | |||||||
|
Nowomics Resource Report Resource Website 1+ mentions |
Nowomics (RRID:SCR_013766) | software resource | A web application that allows users to track new biomedical papers from the PubMed database. Users can search for articles concerning genes, species, disease, techniques, and other related topics and create a personalized Newsfeed related to bookmarked papers. New articles are also displayed in Newsfeed format. | web application, research, PubMed, articles |
uses: PubMed uses: Mendeley uses: Entrez Gene uses: HGNC uses: MeSH uses: HomoloGene is listed by: Connected Researchers is related to: Connected Researchers |
free, public | SCR_013766 | 2026-08-15 11:24:42 | 1 | ||||||||||
|
FORCE11 Resource Report Resource Website 10+ mentions |
FORCE11 (RRID:SCR_005334) | FORCE11 | blog, community building portal, data or information resource, knowledge environment, narrative resource, portal | A collaboration which works to transform scholarly communications through advanced use of computers and the Web. FORCE11 advocates the digital publishing of papers in order to enable more effective scholarly communication. The virtual community also advocates the publication of software tools and research communication by means of social media channels. As such, FORCE11 provides access to information and tools for the wider scientific community. | scholarly communication, scholarship, dissemination, data sharing, knowledge, information technology, semantics, digital publishing, information gathering, research communication, e-scholarship, digital object, scientific communication |
lists: Scholarly Ontologies Project lists: Academia.edu lists: StratML lists: Evernote lists: NPG publishing format lists: Fiduswriter lists: Altmetric Bookmarklet lists: Altmetric Explorer lists: Epistemio lists: Hypothes.is lists: Bio-Formats lists: iSpyBio.com lists: BioLexicon lists: Craig Mod lists: KLEIO lists: aTag Generator lists: Knowledge Engineering from Experimental Design lists: Utopia Docs lists: Zebrafish - SCORE Imaging: Specimen in a Corrected Optical Rotational Enclosure lists: Semantic Measures Library lists: Open Education Database lists: Brainspell lists: IPython lists: Adobe FormsCentral lists: Altmetric API lists: myExperiment lists: ISA Infrastructure for Managing Experimental Metadata lists: Minimum Information for Biological and Biomedical Investigations lists: A modular structure for scientific articles in an electronic environment lists: Liquid Publications: Scientific Publications meet the Web lists: AQnowledge Bookmarklet lists: Authorea lists: Bamboo DiRT lists: Altmetric Badges lists: ESIP Data Management Short Course for Scientists lists: Etherpad lists: Commons In A Box lists: CKAN lists: DMPTool lists: eScholarship lists: Git2PROV lists: OMERO lists: GitHub lists: GROTOAP lists: ImpactStory lists: JCB DataViewer lists: Memento lists: OME-TIFF Format lists: OpenDOAR lists: Open Journal Systems lists: Paper Rejection Repository lists: PLoS Impact Explorer lists: RDFaCE lists: Scholarly Open Access lists: ShareLaTeX lists: Mendeley lists: W3C Provenance Incubator Group Wiki lists: A.nnotate lists: Annotation Ontology lists: Support-of-PDF-annotations lists: Neuroscience Information Framework lists: AlzSWAN Knowledge Base lists: ResearchCompendia lists: resExomeDB lists: SobekCM lists: W3C Open Annotation Community Group lists: Webmaker lists: Wikispaces lists: Mobile Assay lists: WorkingWiki lists: Overleaf lists: Xournal lists: Citation Style Language lists: EnablingOpenScholarship lists: JournalGuide lists: Mindtouch DekiWiki lists: Knowledge Blog lists: DataCite lists: FAIRsharing lists: FigShare lists: CiTO - the Citation Typing Ontology lists: DOAJ - Directory of Open Access Journals lists: Code4Lib Journal WordPress Customizations lists: U-Compare lists: SciCrunch Registry lists: Google Docs lists: CSIBS lists: Europe PubMed Central lists: ORNL DAAC Data Product Citation Policy lists: Pensoft lists: OpenCalais lists: Universal Numerical Fingerprint lists: FAIRSharing Catalogue of Standards lists: Nanopub.org lists: JISC Open Citations lists: W3C Provenance Working Group lists: Workflow4Ever lists: Scholarly Electronic Publishing Bibliography lists: ROARMAP: Registry of Open Access Repositories Mandatory Archiving Policies lists: ROAR lists: total impact.org lists: Publish or perish lists: Scalar lists: PDFX lists: lapdftext lists: Cohere lists: Data Citation Awareness lists: DataCite Ontology lists: Semantic MediaWiki lists: Rubriq lists: VisTrails lists: RSC Prospect lists: HyBrow (Hypothesis Browser) lists: Biotea lists: crowdLabs lists: Argumentative Zoning: Information Extraction from Scientific Articles lists: Synapse lists: BioCreative lists: EZID lists: ResearchGate lists: F1000: Faculty of 1000 Post-Publication Peer Review lists: Acumen Consortium lists: DOI lists: GREC Corpus lists: National Centre for Text Mining lists: SPAR - Semantic Publishing and Referencing Ontologies lists: re3data.org lists: DataUp lists: Open Archives Initiative - Object Reuse and Exchange Initiative lists: Sapienta lists: OBO lists: GENIA Project: Mining literature for knowledge in molecular biology lists: ORCID - Open Researcher and Contributor ID lists: Wikibooks lists: CERMINE lists: CiteAb lists: iAnnotate lists: Eagle I lists: AcroMine lists: FACTA+. lists: Open Provenance Model lists: RightField lists: SEEK lists: BioPortal lists: Reflect lists: Ontology Development and Information Extraction lists: PubMed lists: Open PHACTS lists: NIFSTD lists: Open Provenance Model Vocabulary lists: MEDIE lists: Ontology for Biomedical Investigations lists: Antibody Registry lists: Semantic Web Applications in Neuromedicine (SWAN) Ontology is related to: ShareLaTeX is related to: ResearchCompendia is related to: Overleaf has parent organization: University of California at San Diego; California; USA |
Gordon and Betty Moore Foundation | Free, Public, The community can contribute to this resource, Acknowledgement requested | nlx_149434 | SCR_005334 | FORCE11 - the Future of Research Communications and e-Scholarship, Force 11 | 2026-08-21 12:37:37 | 15 | ||||||
|
Overleaf Resource Report Resource Website 1+ mentions |
Overleaf (RRID:SCR_003232) | authoring tool, commercial organization, software application, software resource | A collaboration tool which allows users to edit and publish scientific articles and papers. Overleaf utilizes the convenience of an easy-to-use WYSIWYG manuscript editor with real-time collaboration and structured, fully typeset output produced automatically. Authors can publish immediately and directly to their journal of choice while publishers can reduce their editorial and review turnaround times with powerful change tracking, commenting, and project lifecycle management features. It was formerly known as writeLaTex but changed its name to Overleaf in 2015. | collaboration tool, authoring, LaTex, writeLaTex |
is used by: University of Oxford; Oxford; United Kingdom is used by: Massachusetts Institute of Technology; Massachusetts; USA; is used by: University of Cambridge; Cambridge; United Kingdom is used by: Harvard University; Cambridge; United States is used by: Ecole Polytechnique Federale de Lausanne; Lausanne; Switzerland is listed by: FORCE11 is related to: Sweave is related to: FigShare is related to: Zotero is related to: CiteULike is related to: Mendeley is related to: bioRxiv is related to: F1000: Faculty of 1000 Post-Publication Peer Review is related to: Rubriq is related to: FORCE11 |
Free, Freely available | nlx_157271 | SCR_003232 | writeLaTex | 2026-08-21 12:36:56 | 1 | ||||||||
|
NIH Heal Project Resource Report Resource Website 10+ mentions |
NIH Heal Project (RRID:SCR_022808) | data or information resource, funding resource, organization portal, portal | Project to help to end opioid addiction. Addiction Long-term Initiative or NIH HEAL Initiative, to speed scientific solutions to stem national opioid public health crisis. Initiative is funding hundreds of projects nationwide. Researchers are taking variety of approaches to tackle opioid epidemic through understanding, managing, and treating pain, and also through improving prevention and treatment for opioid misuse and addiction. | Opioid addiction, end opioid addiction, national opioid public health crisis, prevention and treatment, opioid misuse and addiction, |
uses: NIMH Data Archive uses: Data and Specimen Hub (NICHD DASH) uses: National Addiction and HIV Data Archive Program (NAHDAP) uses: NIDA Data Share uses: The NINDS Human Cell and Data Repository (NHCDR) uses: NIDDK Central Repository uses: Microphysiology Systems Database uses: Vivli uses: FigShare uses: Dryad Digital Repository uses: Dataverse Network Project uses: Mendeley uses: NCBI database of Genotypes and Phenotypes (dbGap) uses: Open Science Framework uses: OpenNeuro uses: Qualitative Data Repository uses: Mouse Phenome Database (MPD) uses: Mouse Genome Informatics (MGI) uses: Zebrafish Information Network (ZFIN) uses: Rat Genome Database (RGD) uses: ZENODO uses: Metabolomics Workbench uses: PubMed Central uses: Protocols.io uses: SPARC Portal uses: GitHub is related to: RE-JOIN HEAL Consortium |
Free, Freely available | SCR_022808 | NIH HEAL Initiative, Addiction Long-term Initiative | 2026-08-21 12:42:31 | 43 | |||||||||
|
ImpactStory Resource Report Resource Website 1+ mentions |
ImpactStory (RRID:SCR_002632) | production service resource, service resource, software resource, source code | A web application which provides altmetrics to help researchers measure and share the impacts of their research outputs. After making a profile, scientists can track which of their publications are most popular through number of citations, frequency of PDF downloads, etc. Information from research outputs such as journal articles, blog posts, datasets, and software contribute to a user's impact, which is viewable in their profile. | altmetrics, metric, citeulike, crossref, scienceseeker, scopus, slideshare, topsy, twitter, vimeo, wordpress.com, plos, youtube |
is used by: Publons is listed by: FORCE11 is listed by: Connected Researchers is listed by: PLOS Article-Level Metrics is related to: PubMed is related to: GitHub is related to: FigShare is related to: Dryad Digital Repository is related to: Wikipedia is related to: Mendeley |
Alfred P. Sloan Foundation ; NSF ; Open Society Foundation |
Free, Freely available | nlx_156056 | SCR_002632 | ImpactStory | 2026-08-21 12:36:46 | 8 | |||||||
|
Mendeley Data Resource Report Resource Website 100+ mentions |
Mendeley Data (RRID:SCR_015671) | data or information resource, data repository, service resource, storage service resource | Cloud-based data repository for storing, publishing and accessing scientific data. Mendeley Data creates a permanent location and issues Force 11 compliant citations for uploaded data. | data repository, published data, citation, force 11, doi, dans, dans (data archiving and networking services) |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing has parent organization: Mendeley works with: DANS |
Free, Public, The research community can contribute to this resource, Account required | DOI:10.25504/FAIRsharing.3epmpp, DOI:10.17616/R3DD11, r3d100011868, DOI:10.17632 | https://doi.org/10.17616/R3DD11, https://doi.org/10.17616/r3dd11, https://doi.org/10.17632/, https://dx.doi.org/10.17632/, https://fairsharing.org/10.25504/FAIRsharing.3epmpp, https://doi.org/10.17616/R3DD11 | SCR_015671 | 2026-08-21 12:40:57 | 239 | ||||||||
|
CitationStyles Resource Report Resource Website |
CitationStyles (RRID:SCR_014000) | data or information resource, database | A database that contains different CSL citation styles. Styles can be searched by name, journal title, or by example and then viewed or installed. Users can also edit current styles and save them. | database, CSL, CSL editor, CSL styles |
is listed by: Connected Researchers is related to: Citation Style Language is related to: Connected Researchers has parent organization: Mendeley |
Public, The community can contribute to this resource | SCR_014000 | 2026-08-21 12:40:14 | 0 | ||||||||||
|
Citation Style Language Resource Report Resource Website 1+ mentions |
Citation Style Language (RRID:SCR_003234) | CSL | data or information resource, interchange format, markup language, narrative resource, standard specification | An open XML-based language used to describe the formatting of citations and bibliographies. CSL has become the standard way to add citation support to software. | annotation, markup, language |
is used by: Mendeley is used by: BibSonomy is used by: ReadCube is used by: Zotero is used by: Colwiz is listed by: FORCE11 is related to: CitationStyles |
Zotero ; Papers ; Mendeley |
Free, Freely available | nlx_157273 | https://www.force11.org/node/5067 | SCR_003234 | Citation Styles | 2026-08-21 12:37:03 | 1 | |||||
|
re3data.org Resource Report Resource Website 50+ mentions |
re3data.org (RRID:SCR_006782) | re3data.org | data or information resource, database, registry | Global registry of research data repositories from all academic disciplines that allows the easy identification of appropriate research data repositories, both for data producers and users. Information icons display principal attributes of a repository that can be used for multi-faceted searches. Repository operators can suggest their infrastructures to be listed via a simple application form. A repository is indexed when the minimum requirements are met, i.e. mode of access to the data and repository, as well as the terms of use. | vocabulary, registry, metadata standard, data sharing, FASEB list |
lists: Academic Seismic Portal at UTIG lists: National Addiction and HIV Data Archive Program (NAHDAP) lists: Alaska Climate Research Center lists: MINT lists: Internet Archive lists: MatrixDB lists: Animal QTLdb lists: MPIDB lists: BeetleBase lists: Conserved Domain Database lists: NeuroMorpho.Org lists: Marine Geoscience Data System lists: Cell Centered Database lists: dbMHC lists: Human Mortality Database lists: UniProt lists: Ligand-Gated Ion Channel Database lists: EcoGene lists: NCBI Genome lists: ESTHER lists: Genomes Online Database lists: Gramene lists: American FactFinder lists: Human Proteinpedia lists: IMGT/HLA lists: Influenza Virus Resource lists: DOE Joint Genome Institute lists: MetaCrop lists: ISPS Data Archive lists: MorphBank lists: miRBase lists: Inter-university Consortium for Political and Social Research (ICPSR) lists: Mouse Phenome Database (MPD) lists: MorphoBank lists: dbVar lists: Open Science Framework lists: TalkBank lists: Nucleic Acid Database lists: NCBI Taxonomy lists: NCBI Protein Database lists: PHI-base lists: Alberta Geological Survey lists: Protein Clusters lists: Reactome lists: Cell Image Library (CIL) lists: eyeMoviePedia lists: ALLBUS - German General Social Survey lists: TPA lists: Agency for Healthcare Research and Quality lists: Alaska Satellite Facility lists: Current German Weather Stations lists: NCBI Structure lists: BOLD lists: PDBe - Protein Data Bank in Europe lists: FishBase lists: Nucleotide database lists: NCBI BioSystems Database lists: SGD lists: Data.gov lists: RHEA lists: European Bioinformatics Institute lists: NCBI Probe lists: NCBI Nucleotide lists: Database of Genomic Variants Archive (DGVa) lists: NCBI Popset lists: Whole Brain Atlas lists: EMAGE Gene Expression Database lists: Limited Access Datasets From NIMH Clinical Trials lists: Tree of Life Web Project lists: TreeBASE lists: UCSC Genome Browser lists: UniPROBE lists: Crystallography Open Database (COD) lists: National Archive of Computerized Data on Aging (NACDA) lists: EOL - Encyclopedia of Life lists: VectorBase lists: caArray lists: NCBI Epigenomics lists: GWAS Central lists: QTL Archive lists: Proteome Commons lists: XNAT Central lists: 4TU.Datacentrum lists: Amazon Web Services Public Data Sets lists: ChemSpider lists: DataStaR lists: Rat Genome Database (RGD) lists: Atlas of Living Australia lists: Electron Microscopy Data Bank at PDBe (MSD-EBI) lists: Phytozome lists: FlyBase lists: MaizeGDB lists: Tuberculosis Database lists: InterPro lists: UNAVCO lists: The Human Protein Atlas lists: InnateDB lists: UniSTS lists: Launchpad lists: Surveillance Epidemiology and End Results lists: FAOSTAT lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database lists: HIstome: The Histone Infobase lists: HPRD - Human Protein Reference Database lists: Biological General Repository for Interaction Datasets (BioGRID) lists: INFEVERS lists: Reciprocal Net lists: Africa Centre for Health and Population Studies lists: BeeBase lists: Biodiversity Heritage Library lists: Databrary lists: ACADIS Gateway lists: ACEpepDB lists: AIMS Data Centre lists: ALADDIN lists: ASTER lists: Access to Archival Databases lists: AidData lists: Alaska Ocean Observing System lists: J. Craig Venter Institute lists: Wellcome Trust Sanger Institute; Hinxton; United Kingdom lists: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) lists: myExperiment lists: BioModels lists: Addgene lists: Antarctic and Southern Ocean Data Portal lists: OpenTopography lists: National Snow and Ice Data Center lists: Biological Magnetic Resonance Data Bank (BMRB) lists: dbSNP lists: Ensembl lists: DNA DataBank of Japan (DDBJ) lists: Entrez Gene lists: Zebrafish Information Network (ZFIN) lists: GitHub lists: DrugBank lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: Gene Expression Nervous System Atlas lists: SumsDB lists: GenBank lists: GermOnline lists: HGNC lists: Greengenes lists: Neuroscience Information Framework lists: HomoloGene lists: ArrayExpress lists: JASPAR lists: WormBase lists: Database of Interacting Proteins (DIP) lists: EMDataResource.org lists: ResearchCompendia lists: Proteomics Identifications (PRIDE) lists: RefSeq lists: FAIRsharing lists: PubChem lists: FigShare lists: UniGene lists: NIMH Data Archive lists: TAIR lists: NCBI BioProject lists: SMD lists: OpenNeuro lists: SoyBase lists: Beta Cell Biology Consortium lists: Biomedical Informatics Research Network lists: Dryad Digital Repository lists: Atlantic Canada Conservation Data Centre lists: Agri-environmental Research Data Repository lists: Australian Antarctic Data Centre lists: Antibody Registry lists: Mouse Genome Informatics (MGI) lists: European Nucleotide Archive (ENA) lists: NIDDK Central Repository lists: GigaScience lists: PeptideAtlas lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation lists: IntAct lists: fMRI Data Center lists: Gene Expression Omnibus lists: Data and Specimen Hub (NICHD DASH) lists: NIDA Data Share lists: The NINDS Human Cell and Data Repository (NHCDR) lists: Microphysiology Systems Database lists: Dataverse Network Project lists: Mendeley lists: Vivli lists: Metabolomics Workbench lists: Qualitative Data Repository lists: Protocols.io lists: ZENODO lists: STRENDA lists: Code Ocean lists: Brain Image Library lists: German Collection of Microorganisms and Cell Cultures lists: INPTDAT lists: DataONE lists: GBIF - Global Biodiversity Information Facility lists: Lamont-Doherty Core Repository lists: CaltechDATA lists: Synapse lists: Incorporated Research Institutions for Seismology lists: Cancer Imaging Archive (TCIA) lists: Mendeley Data lists: UK Data Archive lists: GigaDB lists: PhysioNet lists: Project Data Sphere lists: Influenza Research Database (IRD) lists: Simtk.org lists: ResearchGate lists: Virus Pathogen Resource (ViPR) lists: Cambridge Structural Data Base lists: 4TU.ResearchData lists: Aperta Turkey Open Archive lists: Polar Data Catalogue lists: Arch lists: Australian Data Archive lists: Australian Ocean Data Network lists: Barbara A. Mikulski Archive for Space Telescopes lists: Aston Data Explorer lists: Birkbeck Research Data lists: B2SHARE Eudat lists: BioHeritage National Science Challenge Data Repository lists: Bolin Centre Database lists: Brown Digital Repository is listed by: FORCE11 is related to: U.S. Census Bureau is related to: Rat Genome Database (RGD) is related to: ResearchCompendia has parent organization: Humboldt University of Berlin; Berlin; Germany has parent organization: Karlsruhe Institute of Technology; Karlsruhe; Germany |
DFG | The community can contribute to this resource | nlx_152589 | SCR_006782 | Registry of Research Data Repositories, re3data.org: Registry of Research Data Repositories, re3data | 2026-08-21 12:38:03 | 89 | ||||||
|
Paper Critic Resource Report Resource Website |
Paper Critic (RRID:SCR_014019) | data or information resource, database | A database that archives publications and allows users to review and critique them. Users can write comments for and rate submitted publications for references, originality, argumentation, and reliability. Papercritic also collects tweets and blog posts about published papers to add as reviews and comments. Researchers who submit their published work to PaperCritic can keep track of multiple types of feedback. All reviews must be submitted with full identity disclosure. | database, authoring, evaluation, peer review |
is listed by: Connected Researchers is related to: Mendeley is related to: Connected Researchers |
The community can contribute to this resource | SCR_014019 | 2026-08-21 12:40:10 | 0 |
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