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| Resource Name | Proper Citation | Abbreviations | Resource Type |
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Swartz Center for Computational Neuroscience Resource Report Resource Website 10+ mentions |
Swartz Center for Computational Neuroscience (RRID:SCR_001933) | SCCN | data or information resource, portal, topical portal | Computational neuroscience center that observes and models how functional activities in multiple brain areas interact dynamically to support human cognition, creativity and social interaction. Center research involves development computational methods and software, experimental methods and equipment, collection and analysis of human cognitive experiments, and collaborations to analyze data collected by other groups in such experiments. The Center has a 72-channel EEG recording system customized for use in the fMRI environment, and a very-high density Biosemi Active Two active-electrode EEG system, rapidly configurable either as a 256-channel system for a single subject or as two 136-channel systems for recording from two subjects simultaneously. In addition, UCSD now has a 306-channel MEG plus 128-channel EEG system (Neuromag/Elektra). Projects in the Center include studies of human cognitive processes including attention and memory, role of the anterior/posterior cingulate, time perception and emotional expression. Data acquisition includes high-density EEG, concurrent EEG and fMRI recording and analysis, and face video processing. Current analysis approaches include independent component and time-frequency analysis. | emotional expression, fmri, anterior cingulate, attention, brain, cognition, computational neuroscience, concurrent eeg, high-density eeg, human, memory, posterior cingulate, social interaction, software, time perception, video procession, job, eeg, cognitive process, creativity, independent component analysis, time-frequency analysis |
has parent organization: University of California at San Diego; California; USA is parent organization of: Measure Projection Toolbox is parent organization of: NFT is parent organization of: Source Information Flow Toolbox is parent organization of: FMRLAB is parent organization of: BCILAB is parent organization of: EEGLAB |
Swartz Foundation | nif-0000-10509 | SCR_001933 | Swartz Center for Computational Neuroscience | 2026-09-12 12:55:34 | 34 | |||||||
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University of California at San Diego; California; USA Resource Report Resource Website 10+ mentions |
University of California at San Diego; California; USA (RRID:SCR_011625) | UCSD | university | The University of California, San Diego, also known as UC San Diego, is public research university located in the La Jolla neighborhood of San Diego, California, in the United States. Established in 1960, UCSD has 6 different campuses. | undergraduate, graduate, master's, doctoral, phD, institution, university |
is listed by: DataCite is affiliated with: Diabetes Research Centers is affiliated with: mysamplesize is related to: Alzheimers Disease Genetics Consortium is related to: International AMD Genetics Consortium is related to: Beta Cell Biology Consortium is related to: Clinical and Translational Science Awards Consortium is related to: Collaboratory of AIDS Researchers for Eradciation (CARE) is related to: redcap-to-nda is related to: auto-scoring is related to: FIONASITE is related to: Minimally-Processed-Image-Sharing is related to: timeline-followback is related to: little-man-task is related to: redcap-completion is related to: eprime-data-clean is related to: Fast-Track-Image-Sharing is related to: simple-t1-motion-detection is related to: tick-tock is related to: FIONA-QC-PHANTOM is related to: numerical-fitting is related to: aux-file-upload is related to: FIONA-protocol-compliance is related to: redcap-hook-framework is related to: nih-ipad-app-end-point is related to: ABCDreport is related to: delay-discounting is related to: redcap-importer is related to: pearson-central-end-point is related to: abcd-dev is related to: LungMap is related to: Lung Genome Browser is related to: Common Metabolic Disease Genome Atlas has parent organization: University of California; California; USA is parent organization of: MPScope is parent organization of: University of California at San Diego Cognitive Science Graduate Student Fellowship Opportunities is parent organization of: BindingDB is parent organization of: OntoMorph Tab is parent organization of: Digital Asset Management System is parent organization of: CARTA is parent organization of: MitoProteome is parent organization of: 3DVC is parent organization of: UCSD Center for NMR Spectroscopy and Imaging of Proteins is parent organization of: Kawasaki Disease Dataset is parent organization of: San Diego Supercomputer Center is parent organization of: UCSD Cognitive Science: The Future of Cognitive Science is parent organization of: Shiley-Marcos Alzheimer's Disease Research Center is parent organization of: University of California at San Diego Department of Psychiatry is parent organization of: Swartz Center for Computational Neuroscience is parent organization of: Cell Centered Database is parent organization of: National Center for Microscopy and Imaging Research is parent organization of: National Biomedical Computation Resource is parent organization of: Center for Research in Biological Systems is parent organization of: Community Cyberinfrastructure for Advanced Marine Microbial Ecology Research and Analysis is parent organization of: La Jolla Interdisciplinary Neurosciences Center is parent organization of: Neuroscience Information Framework is parent organization of: Brainscape is parent organization of: SciCrunch is parent organization of: MAGI is parent organization of: iDASH is parent organization of: UCSD-TV is parent organization of: Network Data Exchange (NDEx) is parent organization of: bioCADDIE is parent organization of: UC San Diego Biorepository is parent organization of: National Resource for Network Biology is parent organization of: Lifesharing Tissue Services is parent organization of: Velvet-SC is parent organization of: Transporter Classification Database is parent organization of: Arnaud Delormes Programs Overview is parent organization of: IntegromeDB is parent organization of: SciVee is parent organization of: EEG / ERP Data Set is parent organization of: UCSD Experimental Neuropath Laboratory is parent organization of: FORCE11 is parent organization of: HIV Neurobehavioral Research Center is parent organization of: cd-hit-454 is parent organization of: OneLab is parent organization of: Systems Transcriptional Activity Reconstruction is parent organization of: HeadIT is parent organization of: BiGG Database is parent organization of: Research Accelerator is parent organization of: Rosalind is parent organization of: Divvy is parent organization of: AbsCN-seq is parent organization of: LIPID Metabolites And Pathways Strategy is parent organization of: UCSD-Nature Signaling Gateway Molecule Pages is parent organization of: Whole Brain Catalog is parent organization of: CCHDO is parent organization of: CD-HIT is parent organization of: SDSC Biology Workbench is parent organization of: Swami: The Next Generation Biology Workbench is parent organization of: Booly: A Resource for Biological Data Integration is parent organization of: Molecule pages in neurobiology is parent organization of: University of California, San Diego, Department of Pharmacology is parent organization of: Combinatorial Extension (CE) is parent organization of: Homophila is parent organization of: University of California San Diego Department of Neurosciences is parent organization of: Archives of General Psychiatry is parent organization of: Cal-IT2: Immersive Visualization Laboratory is parent organization of: Institute for Neural Computation is parent organization of: CHARTER - CNS HIV Antiretroviral Therapy Effects Research is parent organization of: Multimodal Imaging Laboratory is parent organization of: Center for Computational Mass Spectrometry is parent organization of: Joint Center for Structural Genomics is parent organization of: Alzheimer's Disease Cooperative Study is parent organization of: Ion Simulator Interface is parent organization of: BioLit is parent organization of: Conical: The Computational Neuroscience Class Library is parent organization of: Digital Fish Library is parent organization of: UCSD Center for AIDS Research Molecular Biology Core is parent organization of: Grid Enabled Molecular Science Through Online Networked Environments is parent organization of: Finite Element Toolkit is parent organization of: Disease Phenotype Ontology is parent organization of: PTSD-TBI INTRuST is parent organization of: Kawasaki Disease Dataset2 is parent organization of: Pediatric Imaging Neurocognition and Genetics is parent organization of: Cerebral Blood Flow Database and Analysis Pipeline is parent organization of: CBFBIRN is parent organization of: UCSD Digital Collections is parent organization of: SIGnAL Salk Institute Genomic Analysis Laboratory is parent organization of: Datamonkey is parent organization of: EULER-SR is parent organization of: Omics Discovery Index is parent organization of: Dangerous Ideas is parent organization of: University of California San Diego School of Medicine; California; USA is parent organization of: ICA (Independent Component Analysis) for dummies is parent organization of: SpikeNET is parent organization of: HOMER is parent organization of: Hammer is parent organization of: CAMERA is parent organization of: RAMMCAP is parent organization of: WebMGA is parent organization of: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) is parent organization of: Alliance for Cellular Signaling Molecule Pages Database is parent organization of: Unys is parent organization of: Mass spectrometry Interactive Virtual Environment (MassIVE) is parent organization of: UCSD Human Milk Biorepository is parent organization of: Reprever is parent organization of: NIDDK Information Network (dkNET) is parent organization of: Cytoscape is parent organization of: BrainInfo is parent organization of: Kepler is parent organization of: TOPSAN is parent organization of: Virmid is parent organization of: neurospy is parent organization of: LAMHDI: The Initiative to Link Animal Models to Human DIsease is parent organization of: HED Tags is parent organization of: Molecular Dynamics Workflow (BioKepler) is parent organization of: Drug Design Data Resource is parent organization of: RepeatScout is parent organization of: GenomeSpace is parent organization of: geocoding is parent organization of: enroll is parent organization of: findMotif.pl is parent organization of: Diabetes Epigenome Atlas is parent organization of: Diabetes Epigenome Atlas is parent organization of: Lab Streaming Layer is parent organization of: Brainome portal is parent organization of: SPARC Anatomy Working Group is parent organization of: Open Science Chain is parent organization of: GNPS is parent organization of: COVID-19 Data Discovery from Clinical Records is parent organization of: FAIR Data Informatics Laboratory is parent organization of: Smart-seq2 Single Nucleus Multi Sample Pipeline is parent organization of: Cocaine Biobank is parent organization of: C-GORD is parent organization of: University of California at San Diego Electron Microscopy Core Facility is parent organization of: University of California at San Diego Institute for Genomic Medicine Genomics Center Core Facilitiy is parent organization of: Flye is parent organization of: Open Data Commons for Spinal Cord Injury is parent organization of: MetGENE is parent organization of: ReDU is parent organization of: Cell Image Library (CIL) is parent organization of: Open Data Commons for Traumatic Brain Injury has organization facet: Taiji |
Crossref Funder ID 100007911, ISNI 0000 0001 2107 4242, Wikidata Q622664, nlx_71933, GRID grid.266100.3, SCR_016626 | https://api.datacite.org/dois?prefix=10.6075, https://ror.org/0168r3w48 | SCR_011625 | University of California San Diego, University of California San Diego; California; USA, UC San Diego, UC San Diego; California; USA | 2026-09-12 12:57:37 | 11 | |||||||
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BCILAB Resource Report Resource Website 10+ mentions |
BCILAB (RRID:SCR_007013) | BCILAB | software resource, source code | Open Source MATLAB toolbox and EEGLAB plugin for the design, prototyping, testing, experimentation with, and evaluation of Brain-Computer Interfaces (BCIs), and other systems in the same computational framework. It facilitates the design and development of new methods for cognitive state estimation and their use in both offline data analysis and real-time applications. BCILAB includes an easily extensible collection of currently over 100 methods from the literature (covering signal processing, machine learning and BCI-specific methods). Aside from supporting advanced BCI research, a special aim of BCILAB is to facilitate the adoption of machine learning and advanced statistical modeling for functional neuroimaging purposes in tandem with the EEGLAB platform. The toolbox offers multiple different interfaces which link to the same backend functionality, including a GUI, scripting support (MATLAB-based), APIs for real-time processing, and a variety of extension component interfaces. MATLAB programming is not strictly necessary, as most BCILAB features can be accessed from the GUI, although it is required for batch scripting and custom extensions. The strength of MATLAB-based software lies in its resources for leading-edge scientific computing, as well as in the good support for rapid prototyping, but BCI systems developed in it can be used for real-time out-of-lab experimentation, and can in principle be deployed without the need for a MATLAB license. However, due to the complexity and overhead of the MATLAB environment, the system is best used as a research platform, and not as a product development environment -- end-user software is ideally re-implemented in a compiled language, after a suitable approach has been identified and extensively tested. The process of identifying and testing an approach involves more than just computation, but also data exploration and investigation - an area which is helped by the deep integration with the EEGLAB platform. In the future, this integration will be further strengthened, bringing rich statistical learning and signal processing into routine EEG analysis workflows. The toolbox has been developed by C. Kothe at the Swartz Center, inspired by the preceding PhyPA BCI toolbox created by C. Kothe and T. Zander at the Chair for Human-Machine Systems, Berlin Institute of Technology. | brain-computer interface, discriminant analysis, temporal integration, matlab, eeg, meg, electrocorticography, statistical operation, temporal transformation, signal processing, machine learning |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB is related to: Neural Maestro has parent organization: Swartz Center for Computational Neuroscience |
GNU General Public License | nlx_153810 | http://www.nitrc.org/projects/bcilab | SCR_007013 | 2026-09-12 01:03:16 | 22 | |||||||
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Measure Projection Toolbox Resource Report Resource Website 1+ mentions |
Measure Projection Toolbox (RRID:SCR_002429) | MPT | software resource, software toolkit | This toolbox is an EEGLAB plugin for performing Measure Projection Analysis. Measure Projection Analysis (MPA) is a novel probabilistic multi-subject inference method that overcomes EEG Independent Component (IC) clustering issues by abandoning the notion of distinct IC clusters. Instead, it searches voxel by voxel for brain regions having event-related IC process dynamics that exhibit statistically significant consistency across subjects and/or sessions as quantified by the values of various EEG measures. Local-mean EEG measure values are then assigned to all such locations based on a probabilistic model of IC localization error and inter-subject anatomical and functional differences. | reusable library, eeg, meg, electrocorticography, matlab, statistical operation, surrogate data analysis, visualization, measure projection analysis |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB has parent organization: Swartz Center for Computational Neuroscience |
Free, Available for download, Freely available | nlx_155809 | http://www.nitrc.org/projects/measure_project | SCR_002429 | Measure Projection Toolbox (MPT) | 2026-09-12 01:02:28 | 3 | ||||||
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NFT Resource Report Resource Website 1+ mentions |
NFT (RRID:SCR_002450) | NFT | data processing software, image analysis software, segmentation software, software application, software resource, software toolkit | A MATLAB Toolbox for generating realistic head models from available data (MRI and/or electrode locations), for computing numerical solutions for the forward problem of electromagnetic source imaging and for single dipole source localization. The NFT includes tools for segmenting scalp, skull, cerebrospinal fluid (CSF) and brain tissues from T1-weighted magnetic resonance (MR) images. The Boundary Element Method (BEM) and Finite Element Method (FEM) are used for the numerical solution of the forward problem. When a subject MR image is not available a template head model can be warped to measured electrode locations to obtain an individualized head model. Toolbox functions may be called either from a graphic user interface compatible with EEGLAB or from the MATLAB command line. | eeg, meg, electrocorticography, eeg modeling, forward - inverse, modeling, matlab, mri, electrode |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB has parent organization: Swartz Center for Computational Neuroscience |
PMID:20457183 | Free, Available for download, Freely available | nlx_155823 | http://www.nitrc.org/projects/nft | SCR_002450 | NFT: Neuroelectromag Forward Modeling, Neuroelectromagnetic Forward Modeling Toolbox, Neuroelectromagnetic Forward Head Modeling Toolbox | 2026-09-12 12:55:41 | 1 | |||||
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Source Information Flow Toolbox Resource Report Resource Website 1+ mentions |
Source Information Flow Toolbox (RRID:SCR_002561) | SIFT | data processing software, data visualization software, image analysis software, segmentation software, software application, software resource, software toolkit | A GUI-enabled EEGLAB plugin for modeling and visualizing dynamical interactions between electrophysiological signals (EEG, ECoG, MEG, etc), preferably after transforming signals into the source domain. The toolbox consists of four modules: (1) Data Preprocessing, (2) Model Fitting and Connectivity Estimation, (3) Statistical Analysis, (4) Visualization, with a fifth Group Analysis module in development. Module 2 currently includes several adaptive multivariate autoregressive modeling (AMVAR) algorithms, including segmentation AMVAR and Kalman filtering. This subsequently allows the user to validate the model and estimate (in the time-frequency domain) a wide range of multivariate Granger-causal and coherence measures published to date. Module 3 includes routines for parametric and non-parametric significance testing. Module 4 contains routines for interactive visualization of dynamical interactions across time, frequency and anatomical source location. | connectivity analysis, directed transfer analysis, eeg, meg, electrocorticography, granger causality, partial directed coherence |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: EEGLAB has parent organization: Swartz Center for Computational Neuroscience |
Free, Available for download, Freely available | nlx_155967 | http://www.nitrc.org/projects/sift | SCR_002561 | 2026-09-12 12:55:42 | 3 | |||||||
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FMRLAB Resource Report Resource Website 1+ mentions |
FMRLAB (RRID:SCR_005164) | FMRLAB | data processing software, software application, software resource | A Matlab toolbox for fMRI data analysis using Independent Component Analysis (ICA). It provides an integrated environment to manage, process and analyze fMRI data in a single framework so that users can complete the analysis without switching between software. In addition, it provides an interactive Matlab graphic user interface (GUI). All the necessary processes to apply ICA to fMRI data and review its results can be run from the graphic interface. The FMRLAB processing flow is straightforward. Custom analyses can be performed with Matlab scripts using the FMRLAB functions and data structure. Since fMRI data analysis is a complex enterprise, including digital image processing, statistical analysis and data visualization, an integrated framework combining processing elements is desired eagerly by users in the neuroimaging community. Recently, large number of software tools for data analysis and visualization have been developed for this purpose. However, most of these tools use model-based statistical methods which assume that the users know the hemodynamic response (HR) for their paradigm in advance and can specify a reasonable HR model. Often, however, accurate or reasonable response HR models are unavailable. An alternative data-driven method, infomax ICA (McKeown et al., 1998), does not require that an a priori HR model, instead deriving HRs of spatially independent components of the entire data set from the higher-order statistics of the data themselves. FMRLAB is a toolbox running under Matlab containing necessary components for data-driven fMRI data analysis using the highly reliable infomax ICA algorithm (Bell & Sejnowski, 1995), normalized (Amari, 1999), extended (Lee, Girolami and Sejnowski, 1999) and automated by Makeig et al. FMRLAB has been developed under Matlab 6.1 running on Red Hat Linux. FMRLAB Features * Graphic user interface * Flexible data importing * Interactive data plotting * Computationally efficient * Defined FMRI data structure * Independent component browser * Smooth, transparent component exporting and spatial normalization process * Interface with other software for further analysis or visualization. * SPM-style component plots (MIP, 2-D slice overlay and 3-D) | fmri, fmr lab, anatomy, brain mapping, data analysis, independent component analysis, neuroimaging, image processing, statistical analysis, data visualization, matlab |
is related to: FreeSurfer has parent organization: Swartz Center for Computational Neuroscience |
NIMH 5RO1MHO61619-03 | nif-0000-00077 | SCR_005164 | 2026-09-12 01:00:55 | 3 | ||||||||
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EEGLAB Resource Report Resource Website 5000+ mentions |
EEGLAB (RRID:SCR_007292) | EEGLAB | data processing software, software application, software resource, software toolkit | Interactive Matlab toolbox for processing continuous and event-related EEG, MEG and other electrophysiological data incorporating independent component analysis (ICA), time/frequency analysis, artifact rejection, event-related statistics, and several useful modes of visualization of the averaged and single-trial data. First developed on Matlab 5.3 under Linux, EEGLAB runs on Matlab v5 and higher under Linux, Unix, Windows, and Mac OS X (Matlab 7+ recommended). EEGLAB provides an interactive graphic user interface (GUI) allowing users to flexibly and interactively process their high-density EEG and other dynamic brain data using independent component analysis (ICA) and/or time/frequency analysis (TFA), as well as standard averaging methods. EEGLAB also incorporates extensive tutorial and help windows, plus a command history function that eases users'' transition from GUI-based data exploration to building and running batch or custom data analysis scripts. EEGLAB offers a wealth of methods for visualizing and modeling event-related brain dynamics, both at the level of individual EEGLAB ''datasets'' and/or across a collection of datasets brought together in an EEGLAB ''studyset.'' For experienced Matlab users, EEGLAB offers a structured programming environment for storing, accessing, measuring, manipulating and visualizing event-related EEG data. For creative research programmers and methods developers, EEGLAB offers an extensible, open-source platform through which they can share new methods with the world research community by publishing EEGLAB ''plug-in'' functions that appear automatically in the EEGLAB menu of users who download them. For example, novel EEGLAB plug-ins might be built and released to ''pick peaks'' in ERP or time/frequency results, or to perform specialized import/export, data visualization, or inverse source modeling of EEG, MEG, and/or ECOG data. EEGLAB Features * Graphic user interface * Multiformat data importing * High-density data scrolling * Defined EEG data structure * Open source plug-in facility * Interactive plotting functions * Semi-automated artifact removal * ICA & time/frequency transforms * Many advanced plug-in toolboxes * Event & channel location handling * Forward/inverse head/source modeling | visualization, eeg modeling, independent component analysis, meg modeling, eeg, erp, spectral decomposition, single-trial, matlab, meg, electrophysiology, format conversion, source separation analysis, fourier time-domain analysis, spectral analysis, temporal wavelet analysis, anova, event related potential, three dimensional display, two dimensional display |
uses: ERPwavelab is used by: PeriodAmplitudeAnalysis is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps is listed by: SoftCite is related to: Neural Maestro is related to: Measure Projection Toolbox is related to: NFT is related to: Source Information Flow Toolbox is related to: HeadIT is related to: BCILAB is related to: EEGVIS is related to: EYE-EEG (combined eye-tracking & EEG) is related to: Libeep EEGLAB plugin is related to: The Bergen fMRI Toolbox Plugin for EEGLab is related to: BVA import/export EEGLAB plugin has parent organization: Swartz Center for Computational Neuroscience has plug in: Dusk2Dawn works with: FieldTrip |
NINDS | PMID:15102499 | Free, Available for download, Freely available | nif-0000-00076 | https://eeglab.org/others/EEGLAB_References.html | http://www.nitrc.org/projects/incf_eeglab/, http://sccn.ucsd.edu/eeglab/index.html | SCR_007292 | 2026-09-12 01:00:57 | 7215 |
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