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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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German Collection of Microorganisms and Cell Cultures Resource Report Resource Website 100+ mentions |
German Collection of Microorganisms and Cell Cultures (RRID:SCR_001711) | DSMZ | data or information resource, database | The DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (German Collection of Microorganisms and Cell Cultures) is the most comprehensive biological resource center in Europe. With more than 18.000 microorganisms, 1.200 plant viruses, 600 human and animal cell lines, 770 plant cell cultures and more than 7.100 cultures deposited for the purposes of patenting, DSMZ has demonstrated their obligation to serve science for decades. Main functions of DSMZ are: - to collect, maintain and store microorganisms and cell lines, as well as other biological material of relevance for applied biology, biotechnology, microbiology, teaching and other areas of research and general application; - to keep the scientific and industrial community informed on the contents of the collections by the means of catalogs, special lists, databases or electronic media; - to supply scientists and institutions with DSMZ cultures, in accordance with national and international laws such as the Infektionsschutzgesetz (Act dealing with protection against infection), the Genetic Engineering Act, the Foreign Trade Laws, the Convention on Biological Diversity as well as the DSMZ terms of supply; - to function as an internationally recognized collection center for the deposit of microorganisms, cell lines, and other biological material which have been cited in scientific literature or which are used in national or international test procedures (e.g. type strains, reference strains for national and international quality control regulations or susceptibility tests, strains with special properties, such as the production of enzymes, degradation of pollutants, host strains for plasmids, etc.); - to act as an International Depositary Authority (IDA) for the deposit of biological material for patent purposes according to the Budapest Treaty; - to act, in a confidential manner, as a center for the safe deposit of biological material; - to act as an advisory center for the scientific community and to offer teaching and service facilities. The DSMZ collections contain over 26 000 cultures (including 6500 patent deposits) representing more than 16 000 cultures of microorganisms (Archaea, Bacteria, plasmids, phages, yeasts, fungi), 750 plant cell cultures, 600 plant viruses, 700 antisera and 580 human and animal cell lines. Unique subcollections are held in the prokaryotes groups of acidophiles, alkaliphiles, halophiles, methanogens, phototrophs, thermophiles, and sulfate reducers. The research is focused on collection related fields which include: - Taxonomy - Evolution - Phylogeny - Microbial diversity and molecular assessment of diversity - Molecular systematics - Research on pathobiological aspects of leukemia-lymphoma cell lines applying classical and molecular genetics, immunological and cell biological methods * Development of cultivation and preservation methods for biological material * Characterization and identification of biological material | enzyme, europe, evolution, fungus, genetic, acidophile, alkaliphile, animal, antisera, archaea, bacteria, biological, biology, biotechnology, cell, cell culture, culture, degradation, diversity, halophile, host, human, human cell line, immunological, leukemia, literature, lymphoma, methanogen, microbial, microbiology, microorganism, molecular, pathobiological, phage, phototroph, phylogeny, plant, plant virus, plasmid, pollutant, prokaryote, reducer, research, science, scientific, strain, sulfate, systematic, taxonomy, thermophile, virus, yeast, FASEB list |
is listed by: DataCite is listed by: re3data.org is parent organization of: SILVA works with: Cellosaurus |
PMID:18080463 | Free, Freely Available | DOI:10.17616/R3G88X, nif-0000-10209, r3d100010219, DOI:10.13145 | https://doi.org/10.17616/R3G88X, https://doi.org/10.17616/r3G88X, https://doi.org/10.13145/, https://dx.doi.org/10.13145/, https://doi.org/10.17616/R3G88X | SCR_001711 | SciCrunch Registry | Leibniz Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures | 2026-09-26 02:18:11 | 424 | |||||
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Cellosaurus Resource Report Resource Website 100+ mentions |
Cellosaurus (RRID:SCR_013869) | data or information resource, database | Database of all cell lines used in biomedical research which include immortalized cell lines, naturally immortal cell lines (stem cells), widely used and distributed finite life cell lines, vertebrate cell lines (majority being human, mouse, and rat), and invertebrate (insects and ticks) cell lines, as well as cell line synonyms. Each cell line is provided with the following information: the recommended name (the name which appears in the original publication), a list of synonyms, a unique accession number, comments on a number of topics including misspellings and gene transfection, information on the tissue/organ origin with the UBERON code, the NCI Thesaurus or Orphanet ORDO code for the disease(s) the individual suffered from (for cancer and human genetic disease lines only), the species of origin, the parent cell line, cross-references of sister cell lines, the sex of the individual, the category in which the cell line belongs (Adult stem cell; Cancer cell line; Embryonic stem cell; Factor-dependent cell line; Finite cell line; Hybrid cell line; Hybridoma; Induced pluripotent stem cell; Spontaneously immortalized cell line; Stromal cell line; Telomerase immortalized cell line; Transformed cell line; Undefined cell line type), web links, publication references, and/or cross-references to cell line catalogs/collections, ontologies, cell lines databases/resources, and to databases that list cell lines as samples. | RIN, Resource Information Network, cell lines, thesaurus, controlled vocabularies, ontologies, RRID Community Authority, |
is used by: ExPASy Bioinformatics Resource Portal is listed by: Resource Information Network is related to: CLASTR has parent organization: SIB Swiss Institute of Bioinformatics works with: ATCC works with: Taiwan Bioresource Collection and Research Center works with: Rio de Janeiro Cell Bank works with: CellBank Australia works with: Collection of Cell Lines in Veterinary Medicine works with: Cell Lines Service works with: Coriell Cell Repositories works with: Drosophila Genomics Resource Center works with: German Collection of Microorganisms and Cell Cultures works with: EBiSC works with: European Collection of Cell Cultures works with: Interlab Cell Line Collection works with: IZSLER Biobank works with: Japanese Collection of Research Bioresources Cell Bank works with: Kunming Wild Animal Cell Bank works with: Korean Cell Line Bank works with: Millipore works with: National Cancer Institute Developmental Therapeutics Program works with: The NINDS Human Cell and Data Repository (NHCDR) works with: NIH AIDS Reagent Program works with: RIKEN BioResource Center works with: Tohoku University Cell Resource Center for Biomedical Research Cell Bank works with: Ximbio |
Swiss Institute of Bioinformatics | PMID:29805321 | Free, Freely available | nif-0000-30108, r3d100010875 | https://doi.org/10.17616/R31906 | SCR_013869 | SciCrunch Registry | 2026-09-26 02:19:23 | 178 | ||||||
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re3data.org Resource Report Resource Website 50+ mentions |
re3data.org (RRID:SCR_006782) | re3data.org | data or information resource, database, registry | Global registry of research data repositories from all academic disciplines that allows the easy identification of appropriate research data repositories, both for data producers and users. Information icons display principal attributes of a repository that can be used for multi-faceted searches. Repository operators can suggest their infrastructures to be listed via a simple application form. A repository is indexed when the minimum requirements are met, i.e. mode of access to the data and repository, as well as the terms of use. | vocabulary, registry, metadata standard, data sharing, FASEB list |
lists: Academic Seismic Portal at UTIG lists: National Addiction and HIV Data Archive Program (NAHDAP) lists: Alaska Climate Research Center lists: MINT lists: Internet Archive lists: MatrixDB lists: Animal QTLdb lists: MPIDB lists: BeetleBase lists: Conserved Domain Database lists: NeuroMorpho.Org lists: Marine Geoscience Data System lists: Cell Centered Database lists: dbMHC lists: Human Mortality Database lists: UniProt lists: Ligand-Gated Ion Channel Database lists: EcoGene lists: NCBI Genome lists: ESTHER lists: Genomes Online Database lists: Gramene lists: American FactFinder lists: Human Proteinpedia lists: IMGT/HLA lists: Influenza Virus Resource lists: DOE Joint Genome Institute lists: MetaCrop lists: ISPS Data Archive lists: MorphBank lists: miRBase lists: Inter-university Consortium for Political and Social Research (ICPSR) lists: Mouse Phenome Database (MPD) lists: MorphoBank lists: dbVar lists: Open Science Framework lists: TalkBank lists: Nucleic Acid Database lists: NCBI Taxonomy lists: NCBI Protein Database lists: PHI-base lists: Alberta Geological Survey lists: Protein Clusters lists: Reactome lists: Cell Image Library (CIL) lists: eyeMoviePedia lists: ALLBUS - German General Social Survey lists: TPA lists: Agency for Healthcare Research and Quality lists: Alaska Satellite Facility lists: Current German Weather Stations lists: NCBI Structure lists: BOLD lists: PDBe - Protein Data Bank in Europe lists: FishBase lists: Nucleotide database lists: NCBI BioSystems Database lists: SGD lists: Data.gov lists: RHEA lists: European Bioinformatics Institute lists: NCBI Probe lists: NCBI Nucleotide lists: Database of Genomic Variants Archive (DGVa) lists: NCBI Popset lists: Whole Brain Atlas lists: EMAGE Gene Expression Database lists: Limited Access Datasets From NIMH Clinical Trials lists: Tree of Life Web Project lists: TreeBASE lists: UCSC Genome Browser lists: UniPROBE lists: Crystallography Open Database (COD) lists: National Archive of Computerized Data on Aging (NACDA) lists: EOL - Encyclopedia of Life lists: VectorBase lists: caArray lists: NCBI Epigenomics lists: GWAS Central lists: QTL Archive lists: Proteome Commons lists: XNAT Central lists: 4TU.Datacentrum lists: Amazon Web Services Public Data Sets lists: ChemSpider lists: DataStaR lists: Rat Genome Database (RGD) lists: Atlas of Living Australia lists: Electron Microscopy Data Bank at PDBe (MSD-EBI) lists: Phytozome lists: FlyBase lists: MaizeGDB lists: Tuberculosis Database lists: InterPro lists: UNAVCO lists: The Human Protein Atlas lists: InnateDB lists: UniSTS lists: Launchpad lists: Surveillance Epidemiology and End Results lists: FAOSTAT lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database lists: HIstome: The Histone Infobase lists: HPRD - Human Protein Reference Database lists: Biological General Repository for Interaction Datasets (BioGRID) lists: INFEVERS lists: Reciprocal Net lists: Africa Centre for Health and Population Studies lists: BeeBase lists: Biodiversity Heritage Library lists: Databrary lists: ACADIS Gateway lists: ACEpepDB lists: AIMS Data Centre lists: ALADDIN lists: ASTER lists: Access to Archival Databases lists: AidData lists: Alaska Ocean Observing System lists: J. Craig Venter Institute lists: Wellcome Trust Sanger Institute; Hinxton; United Kingdom lists: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) lists: myExperiment lists: BioModels lists: Addgene lists: Antarctic and Southern Ocean Data Portal lists: OpenTopography lists: National Snow and Ice Data Center lists: Biological Magnetic Resonance Data Bank (BMRB) lists: dbSNP lists: Ensembl lists: DNA DataBank of Japan (DDBJ) lists: Entrez Gene lists: Zebrafish Information Network (ZFIN) lists: GitHub lists: DrugBank lists: NCBI database of Genotypes and Phenotypes (dbGap) lists: Gene Expression Nervous System Atlas lists: SumsDB lists: GenBank lists: GermOnline lists: HGNC lists: Greengenes lists: Neuroscience Information Framework lists: HomoloGene lists: ArrayExpress lists: JASPAR lists: WormBase lists: Database of Interacting Proteins (DIP) lists: EMDataResource.org lists: ResearchCompendia lists: Proteomics Identifications (PRIDE) lists: RefSeq lists: FAIRsharing lists: PubChem lists: FigShare lists: UniGene lists: NIMH Data Archive lists: TAIR lists: NCBI BioProject lists: SMD lists: OpenNeuro lists: SoyBase lists: Beta Cell Biology Consortium lists: Biomedical Informatics Research Network lists: Dryad Digital Repository lists: Atlantic Canada Conservation Data Centre lists: Agri-environmental Research Data Repository lists: Australian Antarctic Data Centre lists: Antibody Registry lists: Mouse Genome Informatics (MGI) lists: European Nucleotide Archive (ENA) lists: NIDDK Central Repository lists: GigaScience lists: PeptideAtlas lists: 1000 Genomes: A Deep Catalog of Human Genetic Variation lists: IntAct lists: fMRI Data Center lists: Gene Expression Omnibus lists: Data and Specimen Hub (NICHD DASH) lists: NIDA Data Share lists: The NINDS Human Cell and Data Repository (NHCDR) lists: Microphysiology Systems Database lists: Dataverse Network Project lists: Mendeley lists: Vivli lists: Metabolomics Workbench lists: Qualitative Data Repository lists: Protocols.io lists: ZENODO lists: STRENDA lists: Code Ocean lists: Brain Image Library lists: German Collection of Microorganisms and Cell Cultures lists: INPTDAT lists: DataONE lists: GBIF - Global Biodiversity Information Facility lists: Lamont-Doherty Core Repository lists: CaltechDATA lists: Synapse lists: Incorporated Research Institutions for Seismology lists: Cancer Imaging Archive (TCIA) lists: Mendeley Data lists: UK Data Archive lists: GigaDB lists: PhysioNet lists: Project Data Sphere lists: Influenza Research Database (IRD) lists: Simtk.org lists: ResearchGate lists: Virus Pathogen Resource (ViPR) lists: Cambridge Structural Data Base lists: 4TU.ResearchData lists: Aperta Turkey Open Archive lists: Polar Data Catalogue lists: Arch lists: Australian Data Archive lists: Australian Ocean Data Network lists: Barbara A. Mikulski Archive for Space Telescopes lists: Aston Data Explorer lists: Birkbeck Research Data lists: B2SHARE Eudat lists: BioHeritage National Science Challenge Data Repository lists: Bolin Centre Database lists: Brown Digital Repository is listed by: FORCE11 is related to: U.S. Census Bureau is related to: Rat Genome Database (RGD) is related to: ResearchCompendia has parent organization: Humboldt University of Berlin; Berlin; Germany has parent organization: Karlsruhe Institute of Technology; Karlsruhe; Germany |
DFG | The community can contribute to this resource | nlx_152589 | SCR_006782 | SciCrunch Registry | Registry of Research Data Repositories, re3data.org: Registry of Research Data Repositories, re3data | 2026-09-26 02:18:30 | 89 | ||||||
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DataCite Resource Report Resource Website 50+ mentions |
DataCite (RRID:SCR_004139) | nonprofit organization | Platform for storing, finding and accessing data that provides a service for data centres to mint DOIs and store associated metadata. Their goals are to establish easier access to scientific research data on the Internet, increase acceptance of research data as legitimate, citable contributions to the scientific record and support data archiving that will permit results to be verified and re-purposed for future study. DataCite is global, with member institutions offering services and advice directly where they are needed by the researchers. While datasets are shared and accessed globally, researchers work within national funding and organizational frameworks. It therefore operates globally, with national representation. The DataCite Metadata Scheme is a list of core metadata properties chosen for the accurate and consistent identification of data for citation and retrieval purposes, along with recommended use instructions. | data citation, data archiving |
is used by: California Digital Library is used by: Office of Scientific and Technical Information is used by: BGI; Shenzhen; China is used by: ETH Zurich; Zurich; Switzerland is used by: French National Center for Scientific Research is used by: Inter-university Consortium for Political and Social Research (ICPSR) is used by: University of Tartu; Tartu; Estonia is used by: Open Data Commons for Traumatic Brain Injury is used by: SPARC Portal is used by: Pacific Northwest National Laboratory DataHub: Scientific Data Repository is used by: COVID-19 Data Repository is used by: NIDDK Central Repository is used by: Marine Geoscience Data System is used by: National Addiction and HIV Data Archive Program (NAHDAP) is used by: Coherent X-Ray Imaging Data Bank (CXIDB) lists: Biological Magnetic Resonance Data Bank (BMRB) lists: ArrayExpress lists: GigaDB lists: Atlantic Canada Conservation Data Centre lists: Agri-environmental Research Data Repository lists: Australian Antarctic Data Centre lists: TARDIS lists: BioModels lists: Addgene lists: BOLD lists: FigShare lists: Standards-based Infrastructure with Distributed Resources lists: TAIR lists: Biomedical Informatics Research Network lists: 4TU.Datacentrum lists: Amazon Web Services Public Data Sets lists: Atlas of Living Australia lists: Adult Blood Lead Epidemiology and Surveillance Interactive Database lists: Biological General Repository for Interaction Datasets (BioGRID) lists: Africa Centre for Health and Population Studies lists: Biologic Specimen and Data Repository Information Coordinating Center (BioLINCC) lists: STRENDA lists: Brain Image Library lists: CaltechDATA lists: Code Ocean lists: CoMSES Net lists: DataONE lists: DANS lists: GBIF - Global Biodiversity Information Facility lists: German Collection of Microorganisms and Cell Cultures lists: Distributed Archives for Neurophysiology Data Integration lists: INPTDAT lists: Mendeley Data lists: Lamont-Doherty Core Repository lists: MorphoBank lists: Incorporated Research Institutions for Seismology lists: PhysioNet lists: Open Science Framework lists: Simtk.org lists: Synapse lists: OpenNeuro lists: Vivli lists: Cancer Imaging Archive (TCIA) lists: UK Data Archive lists: Dryad Digital Repository lists: Influenza Research Database (IRD) lists: ZENODO lists: National Snow and Ice Data Center lists: ResearchGate lists: Project Data Sphere lists: Qualitative Data Repository lists: Virus Pathogen Resource (ViPR) lists: Cambridge Structural Data Base lists: 4TU.ResearchData lists: Aperta Turkey Open Archive lists: Arch lists: Aston Data Explorer lists: Antarctic Meteorological Research and Data Center Repository lists: Polar Data Catalogue lists: Aston Publications Explorer lists: Astrobiology Habitable Environments Database lists: Australian Ocean Data Network lists: B2SHARE Eudat lists: Barbara A. Mikulski Archive for Space Telescopes lists: Australian Data Archive lists: BioHeritage National Science Challenge Data Repository lists: Abertay University Datasets lists: Birkbeck Research Data lists: BioData Management Portal lists: Bolin Centre Database lists: BRAIN Commons lists: SCAR Antarctic Biodiversity Portal lists: Brown Digital Repository lists: Canadian Polar Data Network lists: Berkeley Seismological Laboratory lists: Biocode Commons lists: DMPTool lists: California Digital Library lists: eScholarship lists: Center for Research in Biological Systems lists: CCHDO lists: California Coastal Atlas lists: Comprehensive Everglades Restoration Plan lists: CRCNS lists: DataMares lists: Drug Design Data Resource lists: EarthCube lists: Geotechnical Extreme Events Reconnaissance lists: iDASH lists: Kavli Institute for Theoretical Physics Online Talks lists: EarthRef lists: Engineering Biology Research Consortium lists: Lawrence Berkeley National Laboratory lists: LBNL OpenMSI lists: National Center for Ecological Analysis and Synthesis lists: Nightingale Open Science lists: Marine and Coastal Research Institute of Columbia; Santa Marta; Colombia lists: Open Tree of Life lists: Open Data Commons for Spinal Cord Injury lists: Arctic Data Center lists: Ocean Protection Council lists: Open Context lists: Partnership for Interdisciplinary Studies of Coastal Oceans lists: Triton Shared Computing Cluster lists: OpenTopography lists: UC Berkeley Research IT lists: Center for Effective Global Action lists: SDSC Center for Applied Internet Data Analysis lists: Project Production Systems Laboratory lists: UC Davis eScholarship lists: UC Davis Social Science Data Service lists: University of California Press lists: UC Natural Reserve System lists: University of California at Riverside; California; USA lists: University of California at San Diego; California; USA lists: UC Medical Humanities Consortium lists: Coastal Data Information Program lists: UCSC Library lists: University of California at Santa Barbara; California; USA lists: University of California at Los Angeles; California; USA lists: Center for Computational Mass Spectrometry lists: Metabolomics Workbench lists: UCSD WIFIRE lists: UC Davis Library lists: Network Data Exchange (NDEx) is listed by: FORCE11 is affiliated with: RAiD is related to: Redivis is parent organization of: DataCite Ontology is parent organization of: ODIN |
Public | grid.475826.a, nlx_16255, Wikidata: Q821542 | https://ror.org/04wxnsj81 | SCR_004139 | SciCrunch Registry | datacite.org, Data Cite | 2026-09-26 02:13:40 | 64 | |||||||
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SILVA Resource Report Resource Website 10000+ mentions |
SILVA (RRID:SCR_006423) | data or information resource, database | High quality ribosomal RNA databases providing comprehensive, quality checked and regularly updated datasets of aligned small (16S/18S, SSU) and large subunit (23S/28S, LSU) ribosomal RNA (rRNA) sequences for all three domains of life (Bacteria, Archaea and Eukarya). Supplementary services include a rRNA gene aligner, online tools for probe and primer evaluation and optimized browsing, searching and downloading on the website. The extensively curated SILVA taxonomy and the new non-redundant SILVA datasets provide an ideal reference for high-throughput classification of data from next-generation sequencing approaches. Alignment tool, SINA, is available for download as well as available for use online. | ribosomal rna, gene sequence, gene, sequence, alignment, taxonomy, 16s, 18s, 23s, 28s, phylogeny, probe, primer, alignment service, fish, arb, ribocon, geoblast, bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian is affiliated with: RNAcentral is related to: ARB project is related to: SINA is related to: European ribosomal RNA database has parent organization: German Collection of Microorganisms and Cell Cultures |
German Collection of Microorganisms and Cell Cultures | PMID:23193283 PMID:24293649 PMID:17947321 |
biotools:silva, OMICS_01514, nif-0000-03464, r3d100011323, rid_000103 | https://bio.tools/silva, https://doi.org/10.17616/R3FP60 | SCR_006423 | SciCrunch Registry | SILVA rRNA database, SILVA - high quality ribosomal RNA databases | 2026-09-26 02:18:30 | 15971 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
