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Resource Name Proper Citation Abbreviations Resource Type Description Keywords Resource Relationships Related Condition Funding Defining Citation Availability Specification URL Alternate IDs Alternate URLs Old URLs Parent Organization Resource ID Synonyms Record Last Update Mentions Count
GlyTorsion
 
Resource Report
Resource Website
1+ mentions
GlyTorsion (RRID:SCR_001568) GlyTorsion analysis service resource, data analysis service, data or information resource, data set, production service resource, service resource Service that performs a statistical analysis of carbohydrate torsion angles derived from the Protein Data Bank. Such as protein conformation can be described by the backbone torsion angles, a carbohydrate structure is mainly characterised by its linkage torsions. With the aid of pdb2linucs, a dataset of carbohydrate torsion angles was derived from from carbohydrate structures found in the PDB. This weekly updated dataset contains, besides linkage torsions, also ring torsions, omega torsions, N-acetyle group torsions and sidechain torsions of Asn residues involved in Glycan bonds. It can be queried by GlyTorsion. carbohydrate, torsion angle, torsion, angle, linkage torsion, ring torsion, omega torsion, n-acetyle group torsion, sidechain torsion, asn residue, glycan bond, statistical analysis is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: pdb2linucs
is related to: CARP
has parent organization: glycosciences.de
DFG PMID:15608187 THIS RESOURCE IS NO LONGER IN SERVICE nlx_152881 SCR_001568 GlyTorsion: Analysis of Carbohydrate Torsion Angles found in the Protein Data Bank (PDB) 2026-09-05 06:24:36 4
GlySeq
 
Resource Report
Resource Website
1+ mentions
GlySeq (RRID:SCR_001569) GlySeq analysis service resource, data analysis service, data or information resource, data set, production service resource, service resource Service dedicated to statistically analyze the sequences around glycosylation sites. Glycosylation belongs to the most common and most important co- and postranslational modifications of proteins. Since it is often difficult to determine which potential glycosylation sites are in fact glycosylated, there is only few data available about glycoproteins. Sources from which such data can be retrieved are SwissProt and the Protein Data Bank (PDB). Data from the PDB is obtained using pdb2linucs and updated weekly. GlySeq is dedicated to statistically analyze these sequences, especially the areas around glycosylation sites. sequence, glycosylation site, glycoprotein sequence, glycoprotein, carbohydrate is related to: Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB)
is related to: pdb2linucs
has parent organization: glycosciences.de
DFG PMID:15608187 THIS RESOURCE IS NO LONGER IN SERVICE nlx_152882 SCR_001569 GlySeq - Statistical Analysis of Glycoprotein Sequences 2026-09-05 06:24:36 1
The Biomedical Research Foundation - Current Research
 
Resource Report
Resource Website
The Biomedical Research Foundation - Current Research (RRID:SCR_001564) data or information resource, portal, topical portal THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. This laboratory facilities contain core research space for monoclonal antibody production, oligonucleotide and peptide synthesis, gene cloning, DNA sequencing, high performance liquid chromatography, tissue culture, positron emission tomography, magnetic resonance spectroscopy and electron microscopy. drug, electron microscopy, - flow cytometry, gene, abuse, alcohol, automated cell imaging, cancer, cloning, confocal and digital microscopy, dna, dna gene chip analysis, immunology, inflammation, ischemic disorder, liquid chromatography, magnetic resonance spectroscopy, mass spectrometry, monoclonal antibody production, neuroscience, oligonucleotide, peptide, polymerase chain reaction (pcr), positron emission tomography, sequencing, signal transduction, synthesis, tissue culture THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-10446 http://www.biomed.org/home http://www.biomed.org/bio_med_research.cfm SCR_001564 BRI Research 2026-09-05 06:24:36 0
Neural Maestro
 
Resource Report
Resource Website
Neural Maestro (RRID:SCR_001563) Neural Maestro data access protocol, software application, software library, software resource, software toolkit, web service THIS RESOURCE IS NO LONGER IN SERVICE, documented August 17, 2016. A C#.NET/C++.NET 4.0 API multi-threaded, parallel class library with CUDA kernels for EEG predictive analytics gleaned from the ModelMaker 2 application. This web service and component library offers functionality to do univariate and multivariate nonlinear time series and frequency based predictive analysis for EEG / Ecog / MEG signals for gaming applications. Neural Maestro works with both EEGLab / BCILab and eConnectome as well as other MATLAB and R packages. It enables one to build highly sophisticated neuroscience applications with little effort in Windows applications. univariate, multivariate, nonlinear time series, time series, frequency, predictive analysis, eeg, ecog, meg, gaming application, neuroscience, computer gaming, modeling, forecasting, matlab, r, artificial intelligence, analytics, neural assessment is related to: EEGLAB
is related to: Neural Cipher
is related to: BCILAB
is related to: ModelMaker
is related to: iBIOFind
has parent organization: The Cromwell Workshop
THIS RESOURCE IS NO LONGER IN SERVICE nlx_153440 SCR_001563 2026-09-05 06:24:36 0
Type 1 Diabetes Genetics Consortium
 
Resource Report
Resource Website
1+ mentions
Type 1 Diabetes Genetics Consortium (RRID:SCR_001557) T1DGC data or information resource, disease-related portal, portal, research forum portal, resource, topical portal Data and biological samples were collected by this consortium organizing international efforts to identify genes that determine an individual risk of type 1 diabetes. It originally focused on recruiting families with at least two siblings (brothers and/or sisters) who have type 1 diabetes (affected sibling pair or ASP families). The T1DGC completed enrollment for these families in August 2009. They completed enrollment of trios (father, mother, and a child with type 1 diabetes), as well as cases (people with type 1 diabetes) and controls (people with no history of type 1 diabetes) from populations with a low prevalence of this disease in January 2010. T1DGC Data and Samples: Phenotypic and genotypic data as well as biological samples (DNA, serum and plasma) for T1DGC participants have been deposited in the NIDDKCentral Repositories for future research. gene, genetics, genotyping, analytic, dna, serum, plasma, data set, biomaterial supply resource, phenotypic, genotypic, autoantibody, hla, phenotype, genotype is listed by: One Mind Biospecimen Bank Listing
is listed by: NIDDK Information Network (dkNET)
is listed by: NIDDK Central Repository
Type 1 diabetes, Diabetes NIDDK ;
NIAID ;
NHGRI ;
JDRF
PMID:17130525 Free, Freely available nlx_152867 SCR_001557 Type 1 Diabetes Genetics Consortium (T1DGC) 2026-09-05 06:24:36 2
CisGenome
 
Resource Report
Resource Website
50+ mentions
CisGenome (RRID:SCR_001558) data analysis tool Integrated software tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis. sequencing software, chip seq, downstream analysis, chip analysis, bio.tools is listed by: OMICtools
is listed by: bio.tools
is listed by: Debian
works with: TileMap
PMID:18978777 Free, Available for download, Freely available OMICS_00423, biotools:cisgenome https://bio.tools/cisgenome http://biogibbs.stanford.edu/~jihk/CisGenome/index.htm SCR_001558 CisGenome v2.0 2026-09-05 06:24:36 83
Intestinal Stem Cell Consortium
 
Resource Report
Resource Website
10+ mentions
Intestinal Stem Cell Consortium (RRID:SCR_001555) ISCC consortium, data or information resource, organization portal, portal THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23,2022. Consortium to advance the understanding of intestinal epithelial stem cell biology during development, homeostasis, regeneration and disease. Its immediate goals are to isolate, characterize, culture and validate populations of intestinal stem cells; answer major questions in stem cell biology of the intestinal epithelium; and accelerate research by making information and resources available to the research community. Resources include data sets, protocols, and a resource catalog. Long-term goals include: 1) laying the ground work for therapeutic manipulation of the intestinal epithelium 2) contributing to the greater understanding of stem cell biology through knowledge of the intestine as a model stem cell-driven system. Research Projects are housed at 8 institutions across the nation: Oregon Health & Science University, Stanford University, Stowers Institute for Medical Research, University of California, Los Angeles School of Medicine (UCLA) (partnered with the VA Greater Los Angeles), University of North Carolina, Chapel Hill (UNC), University of Oklahoma, University of Pennsylvania, and University of Pittsburgh. intestinal, epithelial stem cell, development, homeostasis, regeneration, disease, intestine, stem cell, intestinal stem cell, intestinal epithelium, stem cell, antibody, epithelium, data set is used by: NIF Data Federation
is used by: NIDDK Information Network (dkNET)
is listed by: NIDDK Information Network (dkNET)
is listed by: NIDDK Research Resources
NIDDK U01DK085532 THIS RESOURCE IS NO LONGER IN SERVICE nlx_152862 SCR_001555 ISCC - Intestinal Stem Cell Consortium 2026-09-05 06:24:36 19
NRF Contacts
 
Resource Report
Resource Website
NRF Contacts (RRID:SCR_001473) NRF Contacts data or information resource, data set, people resource This resource provides a list of federal program officials in the neurosciences. An informal compendium of names and contact information for nearly 300 research grant and scientific review administrators in 21 organizational units. director, military, neurodegenerative disease, program officer, 2008, neuroscience has parent organization: Society for Neuroscience NIH ;
NIMH ;
U.S. Department of Health and Human Services
nif-0000-09488 http://www.sfn.org/nrfcontacts SCR_001473 Neuroscience Research Funding Contacts in the Federal Government, Neuroscience Research Funding Contacts 2026-09-05 06:24:35 0
Human Brain Connectivity Database
 
Resource Report
Resource Website
Human Brain Connectivity Database (RRID:SCR_001594) Human Brain Connectivity Database bibliography, data or information resource, data set Preliminary database of neuroanatomical connectivity reports specifically for the human brain, which have been manually curated. It includes details (based on manual literature curation) of tract tracing or related connectivity studies conducted in human brain tissue. This database and user interface will be expanded and improved in the near future. neuroanatomy, brain, tract tracing, connectivity has parent organization: Brain Architecture Project THIS RESOURCE IS NO LONGER IN SERVICE nlx_153841 SCR_001594 2026-09-05 06:24:36 0
Waxholm Space
 
Resource Report
Resource Website
10+ mentions
Waxholm Space (RRID:SCR_001592) WHS, WSA, WSS atlas, data or information resource, narrative resource, standard specification, waxholm atlas THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 1st, 2023. Coordinate based reference space for the mapping and registration of neuroanatomical data. Users can download image volumes representing the canonical Waxholm Space (WHS) adult C57BL/6J mouse brain, which include T1-, T2*-, and T2-Weighted MR volumes (generated at the Duke Center for In-Vivo Microscopy), Nissl-stained optical histology (acquired at Drexel University), and a volume of labels. All volumes are represented at 21.5μ isotropic resolution. Datasets are provided as gzipped NIFTI files. mouse WHS atlas, neuroanatomy, mapping, atlas, digital, brain, reference, registration, neuroanatomical, data, mri is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC)
is related to: Waxholm Space
is related to: Duke University; North Carolina; USA
is related to: PMOD Software
is related to: ITK-SNAP
has parent organization: International Neuroinformatics Coordinating Facility
has parent organization: University of Oslo; Oslo; Norway
works with: MeshView
works with: VisuAlign
PMID:20600960
PMID:21304938
THIS RESOURCE IS NO LONGER IN SERVICE SCR_009594, nlx_153838, nlx_155839 http://software.incf.org/software/waxholm-space/home, http://www.nitrc.org/projects/incf_waxholm-sp SCR_001592 Waxholm Space Atlas, Waxholm Space, Waxholm Standard Space, Mouse WHS atlas 2026-09-05 06:24:36 16
Neurologychannel
 
Resource Report
Resource Website
1+ mentions
Neurologychannel (RRID:SCR_001597) data or information resource, portal, topical portal A topical portal which provides information about conditions that affect the nervous system (brain, spinal cord, nerves, and muscles), such as stroke (brain attack), Alzheimer's disease, and back pain. It is a physician developed and monitored source of neurology information for consumers. Additionally, it contains comprehensive condition and treatment information, as well as interactive tools. alzheimer's disease, back pain, brain, developed, disease, information, monitored, muscle, nerve, nervous system, neurology, physician, spinal cord, stroke Alzheimer's Disease THIS RESOURCE IS NO LONGER IN SERVICE nif-0000-10380 SCR_001597 neurologychannel 2026-09-05 06:24:36 1
Ensembl Variation
 
Resource Report
Resource Website
1+ mentions
Ensembl Variation (RRID:SCR_001630) Ensembl Variation analysis service resource, data analysis service, data or information resource, database, production service resource, service resource Public database that stores areas of genome that differ between individual genomes (variants) and, where available, associated disease and phenotype information. Different types of variants for several species: single nucleotide polymorphisms (SNPs), short nucleotide insertions and/or deletions, and longer variants classified as structural variants (including CNVs). Effects of variants on the Ensembl transcripts and regulatory features for each species are predicted. You can run same analysis on your own data using Variant Effect Predictor. These data are integrated with other data sources in Ensembl, and can be accessed using the API or website. For several different species in Ensembl, they import variation data (SNPs, CNVs, allele frequencies, genotypes, etc) from a variety of sources (e.g. dbSNP). Imported variants and alleles are subjected to quality control process to flag suspect data. In human, they calculate linkage disequilibrium for each variant, by population. genome, disease, phenotype, genomic variant, single nucleotide polymorphism nucleotide, insertion, deletion, structural variant, copy number variation, inversion, translocation, somatic variant, allele frequency, genotype, disease phenotype, inherited disease is used by: MONARCH Initiative
is related to: dbSNP
is related to: Database of Genomic Variants Archive (DGVa)
is related to: PubMed
is related to: Animal QTLdb
is related to: OMIA - Online Mendelian Inheritance in Animals
has parent organization: Ensembl
PMID:23203987
PMID:20562413
PMID:20459810
PMID:20459805
Free, Available for download, Freely available nlx_153897 SCR_001630 ensembl variation 2026-09-05 06:24:37 6
BLASTN
 
Resource Report
Resource Website
10000+ mentions
BLASTN (RRID:SCR_001598) BLASTn analysis service resource, data analysis service, data or information resource, database, production service resource, service resource Web application to search nucleotide databases using a nucleotide query. Algorithms: blastn, megablast, discontiguous megablast. nucleotide, alignment, compare, sequence, genome, blast, transcript, dna sequence is listed by: OMICtools
is listed by: SoftCite
has parent organization: NCBI
works with: Seek and Blastn
works with: RMBlast
PMID:17666756
PMID:18567917
Free, Freely available nlx_153932, OMICS_00990 http://blast.ncbi.nlm.nih.gov/Blast.cgi?PROGRAM=blastn&PAGE_TYPE=BlastSearch&LINK_LOC=blasthome SCR_001598 NCBI BLASTN, Nucleotide Blast, Standard Nucleotide BLAST 2026-09-05 06:24:36 21160
Bilkent University; Ankara; Turkey
 
Resource Report
Resource Website
Bilkent University; Ankara; Turkey (RRID:SCR_001474) university Private university located in Ankara, Turkey that offers undergraduate and graduate programs in fields that include economics, art and architecture, languages, and neuroscience. private, education, university, ankara, economics, art, architecture, languages, neuroscience Free, Freely Available nlx_95218 SCR_001474 Bilkent University 2026-09-05 06:24:35 0
Type 1 Diabetes Resource
 
Resource Report
Resource Website
1+ mentions
Type 1 Diabetes Resource (RRID:SCR_001475) T1DR biomaterial supply resource, material resource, organism supplier International repository for importation, curation, genotypic and phenotypic validation, cryopreservation, and distribution of mouse stocks of value to the type 1 diabetes scientific community holding over 250 genetically modified or congenic mouse stocks that are being used to dissect genetic and biologic features of T1D. They provide extensive genotypic and phenotypic quality control and genetic stabilization for these strains, as well as incidence studies when available. An added value of T1DR stocks is their ability to propel advances in related areas of science, including research in non-T1D autoimmunity and infectious diseases. The staff provides information and technical assistance regarding selection and use of existing T1DR models, and will provide limited support for development of new models considered to be of high-value for the T1D community. The resource includes strains generated at the Jackson Laboratory as well as strains donated by external scientists. Investigators are highly encouraged to donate a strain to ensure its preservation and availability to other researchers. genotype, phenotype, animal model is listed by: One Mind Biospecimen Bank Listing
is listed by: NIDDK Information Network (dkNET)
has parent organization: Jackson Laboratory
Type 1 diabetes, Diabetes NIDDK UC4DK097610 Free, Freely Available nlx_152730 SCR_001475 2026-09-05 06:24:35 1
Type 1 Diabetes TrialNet
 
Resource Report
Resource Website
10+ mentions
Type 1 Diabetes TrialNet (RRID:SCR_001508) TrialNet clinical trial, data or information resource, database, disease-related portal, portal, resource, topical portal International network of researchers who are exploring ways to prevent, delay and reverse the progression of type 1 diabetes. It is conducting clinical trials with researchers from 18 Clinical Centers in the United States, Canada, Finland, United Kingdom, Italy, Germany, Australia and New Zealand. In addition, more than 150 medical centers and physician offices are participating in the TrialNet network. Studies are available for people newly diagnosed with type 1 diabetes, as well as for relatives of people with type 1 diabetes who are at greater risk of developing the disease. This NIH-sponsored clinical trials network conducts studies designed to evaluate new approaches to prevent or ameliorate type 1 diabetes specifically by interdicting the type 1 diabetes disease process. These include interventions designed to decrease beta-cell destruction and/or enhance beta-cell survival. Studies are conducted in non-diabetic persons at risk of type 1 diabetes in an effort to delay the development of type 1 diabetes as a clinical disease; or (if initiated prior to appearance of autoimmunity) in an effort to delay the appearance of autoimmunity; or in individuals with type 1 diabetes who are either newly diagnosed or have evidence of sustained beta cell function. Studies include long-term follow-up of subjects developing type 1 diabetes. The TrialNet network also supports natural history and genetics studies in populations screened for or enrolled in studies conducted by the TrialNet study group. In addition, TrialNet will evaluate methodologies that enhance the conduct of clinical trials interdicting the type 1 diabetes disease process. intervention, beta-cell, clinical, child, young human, natural history, genetics, prevention, delay is listed by: NIDDK Information Network (dkNET)
is listed by: NIDDK Central Repository
has parent organization: University of South Florida; Florida; USA
is parent organization of: Living Biobank
Diabetes, Type 1 diabetes NIDDK U01DK061058 Available to the research community nlx_152812 SCR_001508 2026-09-05 06:24:35 22
Anatomy of the Laboratory Mouse
 
Resource Report
Resource Website
1+ mentions
Anatomy of the Laboratory Mouse (RRID:SCR_001509) Anatomy of the Laboratory Mouse book, data or information resource, narrative resource A book adapted for the Web on the anatomy of the laboratory mouse by Margaret J. Cook, 143 pages, M.R.C. Laboratory Animals Centre, Carshalton, Surrey, England. Academic Press 1965. Mouse Externals, Skeleton, Viscera and Circulatory System are covered. anatomy, image collection has parent organization: Mouse Genome Informatics (MGI) Free, Freely available nlx_153862 SCR_001509 The Anatomy of the Laboratory Mouse 2026-09-05 06:24:35 1
Ancora
 
Resource Report
Resource Website
10+ mentions
Ancora (RRID:SCR_001623) Ancora analysis service resource, data analysis service, data or information resource, database, production service resource, service resource Web resource that provides data and tools for exploring genomic organization of highly conserved noncoding elements (HCNEs) for multiple genomes. It includes a genome browser that shows HCNE locations and features novel HCNE density plots as a powerful tool to discover developmental regulatory genes and distinguish their regulatory elements and domains. They identify HCNEs as non-exonic regions of high similarity between genome sequences from distantly related organisms, such as human and fish, and provide tools for studying the distribution of HCNEs along chromosomes. Major peaks of HCNE density along chromosomes most often coincide with developmental regulatory genes. Their aim with this site is to aid discovery of developmental regulatory genes, their regulatory domains and their fundamental regulatory elements. genome, highly conserved noncoding element, noncoding element, regulatory gene, regulatory domain, regulatory element, developmental regulatory gene, evolution, enhancer is related to: MONARCH Initiative
has parent organization: University of Bergen; Bergen; Norway
Research Council of Norway ;
Bergen Research Foundation ;
Sars Centre
PMID:18279518 Free, Freely available nlx_153891 SCR_001623 Atlas of Noncoding Conserved Regions in Animals 2026-09-05 06:24:36 20
CKID A Prospective Cohort Study of Kidney Disease in Children
 
Resource Report
Resource Website
10+ mentions
CKID A Prospective Cohort Study of Kidney Disease in Children (RRID:SCR_001500) CKID bibliography, data or information resource, disease-related portal, portal, research forum portal, resource, topical portal Prospective, observational cohort study of children with mild to moderate chronic kidney disease (CKD) to: (1) determine risk factors for progression of pediatric chronic kidney disease (CKD); (2) examine the impact of CKD on neurocognitive development; (3) examine the impact of CKD on risk factors for cardiovascular disease, and; (4) examine the impact of CKD on growth. The CKiD study population will include a cohort of 540 children, age 1 16 years, expected to be enrolled over a 24-month period. child, young human, pediatric, risk factor, kidney function, neurodevelopment, cognitive ability, behavior, kidney, urologic problem, glomerular disease, adverse effect, cognition, growth, adolescent, infant, clinical is listed by: NIDDK Information Network (dkNET)
has parent organization: Johns Hopkins University; Maryland; USA
Chronic kidney disease, Renal disease, Cardiovascular disease NIDDK U01DK066174;
NCRR M01RR000052
Free, Freely available nlx_152790 SCR_001500 CKID: A Prospective Cohort Study of Kidney Disease in Children, Chronic Kidney Disease in Children 2026-09-05 06:24:35 10
The Cromwell Workshop
 
Resource Report
Resource Website
The Cromwell Workshop (RRID:SCR_001588) TCW service resource THIS RESOURCE IS NO LONGER IN SERVICE, documented August 17, 2016. Statistical and biomedical informatics software studio that develops neuroscience applications and brain computer interface games. They are dedicated to the integration of medical research, neuroscience, time series analysis, computer programming, statistics, sensor technologies, graphics design, artificial intelligence and entertainment to build gaming systems for neuroscientific research and intelligent tutoring in the classroom and lab. The current focus of The Cromwell Workshop/Neuronal Architects is on theoretical neuroscience and experimental modeling of psychological and neural processes that involve attention, emotion, motivation and executive functions that are impaired by neurological diseases. The outcome of this work is to use these results in the design of multiple genre brain computer interface gaming systems that can be used in both clinical and at home settings. If you would like to explore any collaborative opportunities to use their software or enhance your existing statistical products with their .NET, Java, R and Matlab code bases, let them know. statistical software, web design, medical research, neuroscience, time series analysis, computer programming, statistics, sensor technology, graphics design, artificial intelligence, entertainment, gaming system, modeling, psychological process, neural process, attention, emotion, motivation, executive function, neurological disease, brain computer interface, .net, java, r, matlab, computational neuroscience, time series, gaming is parent organization of: Neural Maestro
is parent organization of: Neural Cipher
is parent organization of: iBIOFind
is parent organization of: eNeoTutor
is parent organization of: ModelMaker
THIS RESOURCE IS NO LONGER IN SERVICE nlx_153830 SCR_001588 Cromwell Workshop 2026-09-05 06:24:36 0

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