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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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SnapATAC2 Resource Report Resource Website 1+ mentions |
SnapATAC2 (RRID:SCR_026622) | software resource, software toolkit, source code | Software Python/Rust package for single-cell epigenomics analysis. | Single-cell epigenomics analysis, | NEI R01EY031663; NHGRI U01HG012059; NHGRI UM1HG011585; NIA R24AG073198; NIA R56AG069107; NIA U54AG079758; NIMH RF1MH128838; NIMH U01MH114828; NIMH U01MH121282; NIMH U19MH114831; NIMH UM1MH130994 |
PMID:38191932 | Free, Available for download, Freely available | SCR_026622 | 2026-09-03 05:10:45 | 4 | |||||||||
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TEProf3 Resource Report Resource Website 1+ mentions |
TEProf3 (RRID:SCR_027288) | software resource, software toolkit, source code | Software pipeline to detect Transposable Elements transcripts. Used to identify TE-derived promoters and transcripts using transcriptomic data from multiple sources, including short-read RNA-seq data, long-read RNA-seq data and single cell RNA-seq data. | Transposable Elements, Transposable Elements transcripts, detect TE transcripts, transcriptomic data, short-read RNA-seq data, long-read RNA-seq data, single cell RNA-seq data, | NHGRI R01HG007175; NHGRI U01HG013227; NIA R01AG078958; NINDS U24NS132103 |
PMID:40360186 | Free, Available for download, Freely available, | SCR_027288 | , TE-derived Promoter Finder 3 | 2026-09-03 05:11:04 | 1 | ||||||||
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hdWGCNA Resource Report Resource Website 10+ mentions |
hdWGCNA (RRID:SCR_027496) | software resource, software toolkit, source code | Software R package for performing weighted gene co-expression network analysis in high dimensional transcriptomics data such as single-cell RNA-seq or spatial transcriptomics. | weighted gene co-expression network, high dimensional transcriptomics data, single-cell RNA-seq, transcriptomics | NIA 1RF1AG071683; NIA 3U19AG068054; NIA U54 AG054349; NIDA 1U01DA053826; NINDS P01NS084974 |
PMID:37426759 | Free, Available for download, Freely available | SCR_027496 | hd Weighted Gene Co-expression Network Analysis | 2026-09-03 05:12:04 | 10 | ||||||||
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CIPR-Package Resource Report Resource Website 1+ mentions |
CIPR-Package (RRID:SCR_027697) | software resource, software toolkit, source code | Software R package for annotating cell clusters in scRNAseq data. | annotating cell clusters in scRNAseq data, annotating cell clusters, scRNAseq data, single cell RNA sequencing experiments, | NIA R01 AG047956; NIA R01 AI123106 |
PMID:32414321 | Free, Available for download, Freely available | SCR_027697 | Cluster Identity PRedictor Package, Cluster Identity PRedictor (CIPR) | 2026-09-03 05:12:11 | 1 | ||||||||
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Alzheimers Disease Genetics Consortium Resource Report Resource Website 10+ mentions |
Alzheimers Disease Genetics Consortium (RRID:SCR_004004) | ADGC | consortium, data or information resource, data set, organization portal, portal | Consortium to conduct genome-wide association studies (GWAS) to identify genes associated with an increased risk of developing late-onset Alzheimer''''s disease (LOAD). The goal of the ADGC is to identify genetic variants associated with risk for AD. It plans to do this through the following collaborative goals: # Identify genes responsible for AD susceptibility # Identify AD sub-phenotype genes rate-of-progression plaque / tangle load / distribution biomarker variability # Generate a genetic data resource for the AD research community Data generated by ADGC is available at the following website: https://www.niagads.org/content/alzheimers-disease-genetics-consortium-adgc-collection | genome-wide association study, gene, biomarker, basic science, genetic variant, genetics, african-american, caucasian |
is listed by: Consortia-pedia is related to: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA is related to: Icahn School of Medicine at Mount Sinai; New York; USA is related to: University of Washington; Seattle; USA is related to: Boston University; Massachusetts; USA is related to: Washington University in St. Louis; Missouri; USA is related to: Vanderbilt University; Tennessee; USA is related to: Oregon Health and Science University; Oregon; USA is related to: Columbia University; New York; USA is related to: University of Miami; Florida; USA is related to: Banner Alzheimer's Institute; Arizona; USA is related to: Indiana University; Indiana; USA is related to: University of Toronto; Ontario; Canada is related to: Mayo Clinic Florida; Florida; USA is related to: Johns Hopkins University; Maryland; USA is related to: Albert Einstein College of Medicine; New York; USA is related to: Genentech is related to: University of Gothenburg; Gothenburg; Sweden is related to: University of North Texas; Texas; USA is related to: University of Kentucky; Kentucky; USA is related to: University of Chicago; Illinois; USA is related to: University of Michigan; Ann Arbor; USA is related to: University of Virginia; Virginia; USA is related to: Florida Alzheimer's Disease Research Center is related to: Mayo Clinic is related to: Emory University; Georgia; USA is related to: New York University; New York; USA is related to: Stanford University; Stanford; California is related to: Northwestern University Feinberg School of Medicine; Illinois; USA is related to: University of Alabama; Alabama; USA is related to: University of Arkansas for Medical Sciences; Arkansas; USA is related to: University of San Diego; California; USA is related to: University of California at Irvine; California; USA is related to: University of California at Los Angeles; California; USA is related to: University of California at San Diego; California; USA is related to: University of California at San Francisco; California; USA is related to: University of Pittsburgh; Pennsylvania; USA is related to: University of Southern California; Los Angeles; USA is related to: University of Texas Southwestern Medical Center; Texas; USA is related to: National Alzheimer's Coordinating Center is related to: Childrens Hospital of Philadelphia - Research Institute; Pennsylvania; USA is related to: National Institute on Aging is related to: University of California at Davis; California; USA is related to: Mayo Clinic College of Medicine is related to: Wake Forest University; North Carolina; USA is related to: National Cell Repository for Alzheimer's Disease is related to: International Genomics of Alzheimers Project is related to: National Alzheimer's Coordinating Center has parent organization: University of Pennsylvania Perelman School of Medicine; Pennsylvania; USA |
NIA UO1AG032984 | nlx_158415 | SCR_004004 | Alzheimer''''s Disease Genetics Consortium (ADGC), Alzheimer''''s Disease Genetics Consortium | 2026-09-03 04:47:00 | 12 | |||||||
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UAB Alzheimer's Disease Center Resource Report Resource Website |
UAB Alzheimer's Disease Center (RRID:SCR_004305) | ADC, UAB ADC | biomaterial supply resource, brain bank, material resource, tissue bank | The UAB Alzheimer's Disease Center provides comprehensive treatment for Alzheimer's patients while also promoting research for the prevention and cure of Alzheimer's disease and related disorders. The ADC is an interdisciplinary program of scientists working in areas including neurology, psychiatry, genetics, and psychology. The Center provides comprehensive treatment and promotes research for the prevention and/or cure of Alzheimer's disease and other related disorders with memory loss and impaired cognition. A major emphasis of research is the maintenance of a clinical research database comprised of neurological, medical, and neuropsychological test data from participants seen in the ADRC Clinical study since 1999, many of whom have been followed for several years in the study. | brain, alzheimer's disease, mild cognitive impairment, brain donation, clinical research database |
is listed by: One Mind Biospecimen Bank Listing has parent organization: University of Alabama at Birmingham; Alabama; USA |
Alzheimer's disease, Mild Cognitive Impairment, Aging | NIA 1P50 AG16582 | Researchers interested in Alzheimer's disease may access the clinical research data | nlx_143674 | http://main.uab.edu/adc/ http://www.uab.edu/medicine/neurology/alzheimers-disease-center | SCR_004305 | UAB Alzheimer's Disease Center, University of Alabama at Birmingham Alzheimer's Disease Center | 2026-09-03 04:47:08 | 0 | ||||
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LONI Visualization Tool Resource Report Resource Website |
LONI Visualization Tool (RRID:SCR_000765) | LONI Viz, LONI_Viz, LOVE | data processing software, data visualization software, software application, software resource | A versatile 1D, 2D and 3D data viewer geared for cross-platform visualization of stereotactic brain data. It is a 3-D viewer that allows volumetric data display and manipulation of axial, sagittal and coronal views. It reads Analyze, Raw-binary and NetCDF volumetric data, as well as, Multi-Contour Files (MCF), LWO/LWS surfaces, atlas hierarchical brain-region labelings ( Brain Trees). It is a portable Java-based software, which only requires a Java interpreter and a 64 MB of RAM memory to run on any computer architecture. LONI_Viz allows the user to interactively overlay and browse through several data volumes, zoom in and out in the axial, sagittal and coronal views, and reports the intensities and the stereo-tactic voxel and world coordinates of the data. Expert users can use LONI_Viz to delineate structures of interest, e.g., sulcal curves, on the 3 cardinal projections of the data. These curves then may be use to reconstruct surfaces representing the topological boundaries of cortical and sub-cortical regions of interest. The 3D features of the package include a SurfaceViewer and a full real-time VolumeRenderer. These allow the user to view the relative positions of different anatomical or functional regions which are not co-planar in any of the axial, sagittal or coronal 2D projection planes. The interactive part of LONI_Viz features a region drawing module used for manual delineation of regions of interest. A series of 2D contours describing the boundary of a region in projection planes (axial, sagittal or coronal) could be used to reconstruct the surface-representation of the 3D outer shell of the region. The latter could then be resliced in directions complementary to the drawing-direction and these complementary contours could be loaded in all tree cardinal views. In addition the surface object could be displayed using the SurfaceViewer. A pre-loading data crop and sub-sampling module allows the user to load and view practically data of any size. This is especially important when viewing cryotome, histological or stained data-sets which may reach 1GB (109 bytes) in size. The user could overlay several pre-registered volumes, change intensity colors and ranges and the inter-volume opacities to visually inspect similarities and differences between the different subjects/modalities. Several image-processing aids provide histogram plotting, image-smoothing, etc. Specific Features: * Region description DataBase * Moleculo-genetic database * Brain anatomical data viewer * BrainMapper tool * Surface (LightWave objects/scenes) and Volume rendering tools * Interactive Contour Drawing tool Implementation Issues: * Applet vs. Application - the software is available as both an applet and a standalone application. The former could be used to browse data from within the LONI database, however, it imposes restrictions on file-size, Internet connection and network-bandwidth and client/server file access. The later requires a local install and configuration of the LONI_Viz software * Extendable object-oriented code (Java), computer architecture independent * Complete online software documentation is available at http://www.loni.ucla.edu/LONI_Viz and a Java-Class documentation is available at http://www.loni.ucla.edu/~dinov/LONI_Vis.dir/doc/LONI_Viz_Java_Docs.html | brain, atlas, visualization, gene mapping, atlas application, magnetic resonance, surface analysis |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: Biositemaps has parent organization: Laboratory of Neuro Imaging |
Aging | NIA P50 AG16570; NLM 2R01 LM05639-06; NIA K08 AG100784; NCRR 2 P41 RR13642; NIMH 5 P01 MN52176; NSF DUE 0442992; NCRR U52 RR021813 |
PMID:16598642 | Free, Available for download, Freely available | nif-0000-23313 | http://www.nitrc.org/projects/incf_loni-viz | http://www.loni.ucla.edu/Software/LOVE | SCR_000765 | LONI Visualization Environment, LONI Viz environment, LOVE | 2026-09-03 04:43:59 | 0 | ||
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Cognitive and Emotional Health Project: The Healthy Brain Resource Report Resource Website |
Cognitive and Emotional Health Project: The Healthy Brain (RRID:SCR_007390) | CEHP | data or information resource, database, portal, topical portal | Trans-NIH project to assess the state of longitudinal and epidemiological research on demographic, social and biologic determinants of cognitive and emotional health in aging adults and the pathways by which cognitive and emotional health may reciprocally influence each other. A database of large scale longitudinal study relevant to healthy aging in 4 domains was created based on responses of investigators conducting these studies and is available for query. The four domains are: * Cognitive Health * Emotional Health * Demographic and Social Factors * Biomedical and Physiologic Factors | healthy aging, cognitive health, demographics, longitudinal study, aging study, late adult human, cognition, emotion, adult human, longitudinal, epidemiology, psychosocial, questionnaire, social factor, physiologic factor | has parent organization: National Institutes of Health | Cognitive impairment, Emotional disorder, Aging | NIA ; NIMH ; NINDS |
nif-0000-00421 | SCR_007390 | Cognitive and Emotional Health Project (CEHP), Cognitive Emotional Health Project: The Healthy Brain, Cognitive Emotional Health Project, Cognitive and Emotional Health Project | 2026-09-03 04:49:21 | 0 | ||||||
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NIA Mutant Mouse Aging Colony Handbook Resource Report Resource Website |
NIA Mutant Mouse Aging Colony Handbook (RRID:SCR_007328) | NIA Mutant Mouse Aging Colony | biomaterial supply resource, material resource, organism supplier | THIS RESOURCE IS NO LONGER IN SERVICE, documented on September 09, 2013. Supply aged mutant and transgenic mice for NIH-supported research directly related to the biology of aging. The mice are raised by the NIA's contractor, Taconic Farms, in Specific Pathogen-Free (SPF) barrier facilities. The strains in the mutant mouse aging colony have been donated by the investigators who developed the models, and those investigators are still the legally recognized owners of the intellectual property. A Material Transfer Agreement (MTA) is required to purchase the mice (a one-time requirement per strain). There are restrictions to the use of this colony as described in the MTA. These restrictions include a prohibition against breeding the mice purchased from the NIA Mutant Mouse Aging Colony, agreement that the mice will not be used for commercial purposes, and agreement that the mice and all derivatives will not be transferred to third parties. The restrictions are further spelled out in the MTA. Animals are sold by age, not weight, and ages are stated in 1 month intervals only; all animals born within a calendar month are considered to be the same age, so date of birth (DOB) is given as month/year. All mice are virgins. The mutant mouse aging colony is slated to end in September 2013. Old mice will be available until September 2013 but the availability of young mice will end earlier. Entries of different strains into the mutant mouse aging colony will end at different times, dependent on the lifespan and pattern of use of the strain. Mouse models include: * Snell Dwarf (3623) ??????????????? last entry will be the November 2011 DOB (date of birth) * Ames Dwarf (324) ??????????????? last entry will be the October 2012 DOB * A53T ???????????????????????-synuclein Transgenic (322) ??????????????? last entry will be the December 2012 DOB * GFP Transgenic (317) ??????????????? last entry will be the January 2013 DOB | mouse, elderly, mus, mutant mouse strain, old mouse, mouse model |
is listed by: One Mind Biospecimen Bank Listing is related to: One Mind Biospecimen Bank Listing has parent organization: NIA Scientific Resources |
Aging | NIA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-00207 | http://www.nia.nih.gov/ResearchInformation/ScientificResources/NIAMutantMouseAgingColony/ | SCR_007328 | Mutant Mouse Aging Colony | 2026-09-03 04:49:32 | 0 | ||||
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Mouse Atlas Project Resource Report Resource Website 10+ mentions |
Mouse Atlas Project (RRID:SCR_007281) | MAP, EMAP | data or information resource, database, atlas | Detailed multidimensional digital multimodal atlas of the C57BL/6J mouse nervous system with a high-throughput data and informatics pipeline that can automatically register, annotate, and visualize large scale neuroanatomical and connectivity data produced in commonly used methodologies including histology, neuronal tract tracing, MR imaging, and genetic labeling. Using multimodal imaging methods on adult mouse brains, this high-resolution atlas forms the basis of a useful interchange reference system for the mouse. MAP2.0 interoperates with commonly used publicly available databases to bring together brain architecture, gene expression, and imaging information into a single, simple interface. The project enables scientists to leverage the results of brain atlasing efforts in their investigations of gene function, connectomics, and detailed mouse neuroanatomy. The MAP atlas is comprised of a magnetic resonance microscopy (MRM) and an anatomic delineation volume, and a set of software tools for visualization, navigation, and registration of image volumes. The software tools bundled with the atlas volumes are SHIVA (visualization and analysis), BrainGraph (navigation and connectivity), and GEMporter (registration and importation). A database of ancillary volumes is available online, a supplement to the Mouse Atlas Project core volumes. They represent different developmental time points and methods of preparation. To facilitate the process of selecting and analyzing image data from this collection, we have developed a relational database application to manage and catalog the images and related data. Attributes of the subject such as age, strain, weight and anatomical structure are recorded, as are image volume properties such as modality, resolution and anatomical structure. The ongoing partnership with the Brain Architecture Center has led to the development of a robust and flexible nomenclature and anatomical ontology for MAP2.0. This collaboration extends both Mouse Atlas Project and the Brain Architecture Management System. | molecular neuroanatomy resource, adult mouse, mouse, brain, c57bl/6j, magnetic resonance microscopy, diffusion-weighted image, blockface imaging, immunohistochemistry, in situ hybridization, neuroanatomy, mri, dti, brain architecture, gene expression, neuroimaging, ontology, connectivity, histology, neuronal tract tracing, genetic labeling, newborn mouse, experimental protocol, bio.tools, bio.tools |
is listed by: bio.tools is listed by: Debian is related to: Synchronized Histological Image Viewing Architecture is related to: LONI Image and Data Archive is related to: University of Southern California LONI Software |
Aging | NINDS ; NIBIB ; NIDA ; NIDCD ; NIA |
nif-0000-00038, biotools:emap, biotools:ma | https://bio.tools/emap, https://bio.tools/ma | http://www.loni.ucla.edu/MAP/ | SCR_007281 | 2026-09-03 04:49:31 | 17 | |||||
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Olfactory Receptor DataBase Resource Report Resource Website 1+ mentions |
Olfactory Receptor DataBase (RRID:SCR_007830) | ORDB | analysis service resource, data analysis service, data or information resource, data repository, database, production service resource, service resource, storage service resource | Database of vertebrate olfactory receptors genes and proteins. It supports sequencing and analysis of these receptors by providing a comprehensive archive with search tools for this expanding family. The database also incorporates a broad range of chemosensory genes and proteins, including the taste papilla receptors (TPRs), vomeronasal organ receptors (VNRs), insect olfaction receptors (IORs), Caenorhabditis elegans chemosensory receptors (CeCRs), and fungal pheromone receptors (FPRs). ORDB currently houses chemosensory receptors for more than 50 organisms. ORDB contains public and private sections which provide tools for investigators to analyze the functions of these very large gene families of G protein-coupled receptors. It also provides links to a local cluster of databases of related information in SenseLab, and to other relevant databases worldwide. The database aims to house all of the known olfactory receptor and chemoreceptor sequences in both nucleotide and amino acid form and serves four main purposes: * It is a repository of olfactory receptor sequences. * It provides tools for sequence analysis. * It supports similarity searches (screens) which reduces duplicate work. * It provides links to other types of receptor information, e.g. 3D models. The database is accessible to two classes of users: * General public www users have full access to all the public sequences, models and resources in the database. * Source laboratories are the laboratories that clone olfactory receptors and submit sequences in the private or public database. They can search any sequence they deposited to the database against any private or public sequence in the database. This user level is suited for laboratories that are actively cloning olfactory receptors. | fungal, pheromone receptor, gene, chemosensory, chemosensory receptor, g protein-coupled receptor, olfaction receptor, protein, receptor, taste papilla receptor, vomeronasal organ receptor, olfactory receptor, nucleotide, amino acid, chemoreceptor sequence, olfactory receptor sequence, chemoreceptor, sequence |
is used by: NIF Data Federation is listed by: 3DVC is related to: Odor Molecules DataBase is related to: Integrated Manually Extracted Annotation has parent organization: Yale School of Medicine; Connecticut; USA |
Aging | Human Brain Project ; NIMH ; NIA ; NICD ; NINDS ; Multidisciplinary University Research Initiative ; National Aeronautics and Space Administration ; NIDCD RO1 DC 009977; NIDCD P01 DC 04732; NLM G08 LM05583 |
PMID:11752336 PMID:9847223 PMID:9218144 |
Public, Private, Acknowledgement requested, The community can contribute to this resource | nif-0000-03213 | SCR_007830 | Olfactory Receptors Database | 2026-09-03 04:49:27 | 4 | ||||
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University of Pittsburgh Alzheimer Disease Research Center Resource Report Resource Website 100+ mentions |
University of Pittsburgh Alzheimer Disease Research Center (RRID:SCR_008084) | ADRC | data or information resource, disease-related portal, portal, topical portal | A research center associated with the University of Pittsburgh that specializes in the diagnosis of Alzheimer's disease and related disorders. The overall objective of the ADRC is to study the pathophysiology of Alzheimer's disease, with the aim of improving the reliability of diagnosis of Alzheimer's and developing effective treatment strategies. Current research foci emphasize neuropsychiatry and neuropsychology, molecular genetics and epidemiology, basic neuroscience, and structural and functional imaging that aid in the diagnosis and treatment of Alzheimer's disease. Specific services at the ADRC include: comprehensive diagnostic evaluation of patients with suspected Alzheimer's disease and other forms of dementia; evaluation of memory, language, judgment, and other cognitive abilities; and education and counseling for patients and families. | african american, alzheimer's disease, assessment, clinical, cognitive, dementia, diagnosis, diagnostic evaluation, human, medical, mild cognitive impairment, neurological, pathophysiology, psychiatric | has parent organization: University of Pittsburgh; Pennsylvania; USA | Alzheimer's disease, Mild Cognitive Impairment, Dementia, Aging | NIA | Public | nif-0000-10750 | SCR_008084 | University of Pittsburgh Alzheimer's Disease Research Center | 2026-09-03 04:49:27 | 494 | |||||
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NIA Scientific Resources Resource Report Resource Website |
NIA Scientific Resources (RRID:SCR_008269) | NIA Scientific Resources | biomaterial supply resource, material resource, organism supplier | A resource that provides information on the vast number of resources available from the National Institute of Aging. NIA maintains approximately 150 primates (Macaca mulatta) at four regional primate centers where aging-related research is conducted. NIA also maintains colonies of aged rats and mice that are used for age-related disease research. This resource supports a multi-institutional study, the Interventions Testing Program (ITP), that investigates diets and dietary supplements that extend lifespan, delay disease and avoid dysfunction. NIA is also in charge of a microarray facility which provides filter arrays of 17,000 mouse cDNA clone sets that were developed at the NIA Intramural Research Program Laboratory of Genetics. NIA supports studies that provide biospecimens that can be shared for later research. This resource also helps the C. elegans Genetic Center at the University of Minnesota, which contains 1,000 strains of C. elegans that can be used for aging studies. This resource also provides a searchable database for epidemiological research on aging. There is access to social and behavioral research materials, including books on aging and health, from the research was conducted and supported by NIA. There are links to federal web sites that are further resources for aging research that were supported by NIA. | macaca mulatta, rodent, epidemiological, fibroblast, genetics, alzheimer's disease, animal, array, behavioral, caenorhabditis elegans, cdna, cell, colony, culture, disease, dna, human, hutchinson-guilford, intervention, microarray, mouse, mutation, non-human primate, premature, primate, progeria, rat, repository, scientific, skin, social, supplement, syndrome, werner, diet, dietary supplement, longitudinal, health |
has parent organization: National Institute on Aging is parent organization of: NIA Aged Rodent Colonies is parent organization of: NIA Nonhuman Primate Tissue Bank is parent organization of: NIA Mutant Mouse Aging Colony Handbook is parent organization of: Database for Sharing Aging Research Models |
Aging | NIA | nif-0000-23759 | http://www.nia.nih.gov/ResearchInformation/ScientificResources/ | SCR_008269 | NIA Non-Human Primate Centers and Tissue Banks | 2026-09-03 04:49:40 | 0 | |||||
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BRAID Resource Report Resource Website 10+ mentions |
BRAID (RRID:SCR_008702) | BRAID | data or information resource, database, image, software resource, source code | Large-scale archive of normalized digital spatial and functional data with an analytical query mechanism. One of its many applications is the elucidation of brain structure-function relationships. BRAID stores spatially defined data from digital brain images which have been mapped into normalized Cartesian coordinates, allowing image data from large populations of patients to be combined and compared. The database also contains neurological data from each patient and a query mechanism that can perform statistical structure-function correlations. The project is developing database technology for the manipulation and analysis of 3-dimensional brain images derived from MRI, PET, CT, etc. BRAID is based on the PostgreSQL server, an object/relational DBMS, which allows a standard relational DBMS to be augmented with application-specific datatypes and operators. The BRAID project is adding operations and datatypes to support querying, manipulation and analysis of 3D medical images, including: * Image Datatypes: BRAID supports a family of 3D image datatypes, each having an abstract type and an implementation type. Abstract types include boolean (for regions of interest), integer, float, vector (for representing morphological changes), tensor (for representing derivatives and standard deviations of vector images) and color. Implementation types at present include line-segment format and voxel array. * Image Operators: BRAID supports addition of images, multiplication (which is interpreted as intersection for boolean images), coercion of an image''s abstract or implementation type to another value, and determination of volumes of regions of interest. * Statistical Operators: A chi-squared test has been added to SQL as an aggregate operator on pairs of boolean values. * Web Interface: A general-purpose Web gateway allows the results of queries that return computed images to be displayed. You can download the BRAID source code 2.0. This version is developed under postgreSQL 7.3.4., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025. | brain image, data mining, brain, magnetic resonance, analysis, image display, mri, pet, ct, structure, function, brain | has parent organization: University of Pennsylvania; Philadelphia; USA | Aging | NIA R01 AG13743 | PMID:18467275 PMID:11191696 PMID:9874539 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_143545, r3d100010227 | https://doi.org/10.17616/R3F88M | SCR_008702 | BRAID: Brain Image Database, Brain Image Database | 2026-09-03 04:49:54 | 11 | |||
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Emory Alzheimer's Disease Research Center Resource Report Resource Website |
Emory Alzheimer's Disease Research Center (RRID:SCR_008761) | data or information resource, disease-related portal, portal, topical portal | An Alzheimer's research center which focuses on mild cognitive impairment and early diagnosis and treatment of memory disorders. The Center hosts clinical trials in which the public can participate. Its resources for scientists include a tissue and biospecimen banking facility, the Emory neurology database, and research seminars. | memory loss, mild cognitive impairment, alzheimer's disease, clinical evaluation, clinical trial, memory disorder, neurodegenerative disease, meeting, seminar |
is affiliated with: Emory ADRC Tissue and Biospecimen Banking Facility is affiliated with: Emory Neurology Database has parent organization: Emory University School of Medicine; Atlanta; Georgia; USA |
Aging, Alzheimer's disease | NIA 2P50AG025688-06 | Public, Available to the research community | nlx_144034 | SCR_008761 | Emory Alzheimer's Disease Research Center, Emory ADRC | 2026-09-03 04:49:57 | 0 | ||||||
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Johns Hopkins Alzheimer's Disease Research Center Resource Report Resource Website |
Johns Hopkins Alzheimer's Disease Research Center (RRID:SCR_008757) | biomaterial supply resource, brain bank, material resource, tissue bank | A Alzheimer's Disease Research Center (ADRC) whose goal is to conduct basic and clinical research aimed at understanding Alzheimer's disease. The Center enrolls a variety of individuals for clinical trials, evaluation and follow-up, including: normal control subjects, individuals with mild memory problems, and patients diagnosed with Alzheimer's Disease or related dementias. Researchers can request data and specimens obtained from ADRC subjects. These include blood or DNA, brain specimens, and cross-sectional or longitudinal clinical and cognitive data, all from ADRC subjects. | alzheimer's disease, mild memory problem, dementia, clinical data, cognitive data, blood, dna, brain, tissue, human, clinical trial, memory |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Johns Hopkins University School of Medicine; Baltimore, Maryland; USA |
Alzheimer's disease, Normal control, Mild memory problem, Dementia, Aging | NIA | Public, Researchers can request data and specimens obtained from ADRC subjects | nlx_144105 | SCR_008757 | Johns Hopkins ADRC, Johns Hopkins Alzheimer's Disease Research Center | 2026-09-03 04:49:57 | 0 | ||||||
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Brain Research Institute Biobank Resources Resource Report Resource Website |
Brain Research Institute Biobank Resources (RRID:SCR_008756) | biomaterial supply resource, brain bank, material resource, tissue bank | Brain bank resources which include postmortem human frozen brain tissue and matched cerebrospinal fluid (CSF) and blood available for scientists to search for etiopathogeneses of human disease. The National Neurological Research Specimen Bank and the Multiple Sclerosis Human Neurospecimen Bank maintains a collection of quick frozen and formalin fixed postmortem human brain tissue and frozen cerebrospinal fluid from patients with neurological diseases, including Alzheimer's Disease, amyotrophic lateral sclerosis, depressive disorder/suicide, and epilepsy, among others. Diagnoses are documented by clinical medical records and gross/microscopic neuropathology. The Neuropathology Laboratory at the UCLA Medical Center maintains a bank of frozen, formalin and paraformaldehyde-fixed and paraffin-embedded postmortem human brain tissues and frozen cerebrospinal fluid (CSF) from patients who die with Alzheimer's disease and other dementing and degenerative illnesses, as well as control materials removed in a similar fashion from patients who are neurologically normal. | postmortem, brain, coronal, brain tissue, cerebral spinal fluid, blood, cerebral spinal fluid cell, cell-free cerebral spinal fluid, serum, plasma, buffy coat, frozen, formalin fixed, paraformaldehyde-fixed, paraffin-embedded, neurological disease, alzheimer's disease, amyotrophic lateral sclerosis, depressive disorder, suicide, epilepsy, huntington's disease, multiple sclerosis, parkinson's disease, progressive supranuclear palsy, schizophrenia, stroke, cerebrovascular accident, fronto-temporal dementia, neurologically normal, coronal section, control, clinical data |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Brain Research Institute |
Neurological disease, Alzheimer's disease, Amyotrophic Lateral Sclerosis, Depressive Disorder, Suicide, Epilepsy, Huntington's disease, Multiple Sclerosis, Parkinson's disease, Progressive Supranuclear Palsy, Schizophrenia, Stroke, Cerebrovascular Accident, Fronto-temporal dementia, Aging | NINDS ; NIMH ; National MS Society ; United States Department of Veterans Affairs ; Veterans Affairs West Los Angeles Healthcare Center ; NIA |
Public, Available to the research community | nlx_143996 | http://www.bri.ucla.edu/bri_research/research_resources.asp | SCR_008756 | Brain Research Institute Research Resources, Brain Research Institute Biobanks, BRI Research Resources, BRI Biobanks, BRI Biobank Resources | 2026-09-03 04:49:56 | 0 | |||||
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Mayo Clinic Jacksonville: Neuropathology and Microscopy Resource Report Resource Website 1+ mentions |
Mayo Clinic Jacksonville: Neuropathology and Microscopy (RRID:SCR_008753) | biomaterial supply resource, brain bank, material resource, tissue bank | A brain bank and laboratory focused on memory and motor disorders. Brains are sent to the laboratory for diagnosis and research for the State of Florida Alzheimer Disease Initiative and for the Society for Progressive Supranuclear Palsy. As part of this brain banking function, fixed and frozen brain samples are obtained at autopsy and sent to the laboratory for diagnostic evaluation and for various types of research studies. The major types of analyses performed on the brain samples include neuro-histology, immunohistochemistry, confocal microscopy, electron microscopy and image analysis, as well as immunoassays. The latter are based upon Western blotting and enzyme linked immunoassays. The laboratory has a specific interest in the interface between normal aging and Alzheimer's disease, as well as in non-Alzheimer's degenerative disorders such as Lewy body dementia, corticobasal degeneration, progressive supranuclear palsy and frontotemporal dementia. The primary focus of research on aging is neuropathologic characterization of brains of individuals who had been prospectively and longitudinally evaluated during life. These studies aim to determine differences in a range of biologic parameters in brains of people with normal cognitive, mild cognitive impairment and dementia. Their focus on Parkinson's disease is to identify preclinical Parkinson's disease in order to develop means for early diagnosis. | tissue, brain, fixed, frozen, alzheimer's disease, normal aging, memory disorder, motor disorder, parkinson's disease, progressive supranuclear palsy, lewy body disease, corticobasal degeneration, frontotemporal dementia, dementia, mild cognitive impairment, mouse, neurofibrillary degeneration, postmortem, normal control, autopsy |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Mayo Clinic Florida; Florida; USA has parent organization: Mayo Alzheimer's Disease Research Center has parent organization: Florida Alzheimer's Disease Research Center |
Alzheimer's disease, Aging, Memory disorder, Motor disorder, Parkinson's disease, Progressive Supranuclear Palsy, Lewy Body Disease, Corticobasal Degeneration, Frontotemporal dementia, Dementia, Mild Cognitive Impairment | NIA P50-AG16574; NIA P50-AG25711; NINDS P50-40256 |
nlx_143952 | SCR_008753 | Mayo Clinic Jacksonville: Neuropathology Microscopy, Mayo Clinic Florida: Neuropathology and Microscopy, Neuropathology and Microscopy - Dennis W. Dickson, Mayo Clinic Florida: Neuropathology and Microscopy - Dennis W. Dickson | 2026-09-03 04:50:13 | 1 | |||||||
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Mount Sinai Alzheimer's Disease Research Center Resource Report Resource Website |
Mount Sinai Alzheimer's Disease Research Center (RRID:SCR_008780) | Mount Sinai ADRC | biomaterial supply resource, brain bank, material resource, tissue bank | A research facility and clinical program that is dedicated to the study and the treatment of both normal aging and Alzheimer's disease. This facility will accommodate requests for its resources (for example, data or tissue) from investigators that are not funded by the ADRC. Their team is composed of experts in geriatrics, geriatric psychiatry and psychology, neurology, pathology, and radiology. All team members work to provide services to those with memory disorders. This center sponsors educational programs for healthcare professionals and community groups. Data from the ADRC cores are available to all ADRC investigators after approval from the PI who collected the data. Data generated by the ADRC cores are communicated to the National Alzheimer's Coordinating Center (NACC) and can be available through them. Tissue can be distributed after approval of the Tissue Allocation Committee, and can be used for further research. | normal aging, alzheimer's disease, late adult human, memory disorder, memory, dementia, healthy, brain tissue, brain, tissue, paraffin embedded, block, stain, clinical |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
Alzheimer's disease, Aging, Healthy | NIA | Public / Collaborator: The ADRC at Mount Sinai School of Medicine is receptive to requests of ADRC resources (data, Tissue, And so on). The ADRC welcomes requests for tissue from Investigators not currently funded by the ADRC. Tissues needed for conduct of ADRC projects are distributed directly to PIs. Distribution of tissue will be made on a collaborative basis only and determined on a case by case basis by the Tissue Allocation Committee. | nlx_144162 | SCR_008780 | Mount Sinai School of Medicine ADRC, Mount Sinai School of Medicine Alzheimer's Disease Research Center, Mount Sinai Alzheimer's Disease Research Center | 2026-09-03 04:49:45 | 0 | |||||
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University of Washington Alzheimers Disease Research Center Resource Report Resource Website 1+ mentions |
University of Washington Alzheimers Disease Research Center (RRID:SCR_008814) | UW ADRC | data or information resource, disease-related portal, portal, topical portal | Research center investigating the basic mechanisms underlying the development of Alzheimer's disease and related disorders, directing particular attention to biomarkers and experimental new treatments. They also continue to search for genetic risk factors underlying Alzheimer's disease (AD). Their main priorities are to find causes, effective treatments, and prevention strategies. Their investigators also are partnering with other Alzheimer's Centers across the country to evaluate promising new medications and other treatments for AD. The ultimate goal of their basic and clinical studies is to improve patient care and function, and improve the quality of life for both the patient and the caregiver. ADRC Cores: * Administration * Clinical Core * Satellite Core * Data Management & Biostatistics * Neuropathology Core * Education & Information Transfer * Genetics | late adult human, clinical, genetic, treatment, human, prevention, cause, genetic risk factor | has parent organization: University of Washington; Seattle; USA | Alzheimer's disease, Aging | NIA | Public | nlx_144418 | SCR_008814 | UW Alzheimer's Disease Research Center, Alzheimer's Disease Research Center at University of Washington, University of Washington ADRC | 2026-09-03 04:50:15 | 2 |
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