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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Connectome Workbench Resource Report Resource Website 50+ mentions |
Connectome Workbench (RRID:SCR_008750) | CWB, wb_view, wb_command, wb_import | software resource, software toolkit, source code | Software brain visualization, analysis and discovery tool for fMRI and dMRI brain imaging data, including functional and structural connectivity data generated by the Human Connectome Project. Used to map brain imaging data. Allows for visualization of outputs from HCP pipelines from single subject, or average data from group of subjects and register that data onto standard brain atlas. | visualization, connectivity, brain, human, fMRI, dMRI, brain imaging data, map neuroimaging data, |
is used by: BRAIN Initiative Cell Atlas Network is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: FAIRsharing is related to: BALSA is related to: Washington University in St. Louis; Missouri; USA works with: ConnectomeDB works with: NIMP: Neuroanatomy-anchored Information Management Platform for Collaborative BICAN Data Generation |
NIH Blueprint for Neuroscience Research ; NIMH MH060974 |
Free, Available for download, Freely available | nlx_143924 | http://www.nitrc.org/projects/workbench, https://github.com/Washington-University/workbench, https://www.humanconnectome.org/software/workbench-command, https://www.humanconnectome.org/software/get-connectome-workbench, http://humanconnectome.org/connectome/connectome-workbench.html | SCR_008750 | 2026-08-29 11:23:11 | 95 | ||||||
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Human Connectome Coordination Facility Resource Report Resource Website 1000+ mentions |
Human Connectome Coordination Facility (RRID:SCR_008749) | WU-Minn HCP | data repository, image repository, service resource, storage service resource | Consortium to comprehensively map long-distance brain connections and their variability. It is acquiring data and developing analysis pipelines for several modalities of neuroimaging data plus behavioral and genetic data from healthy adults. | brain, connectivity, adult human, mri, resting-state fmri, functional mri assay, neuroimaging, surface rendering, time domain analysis, tractography, xnat pipeline |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: FSL is related to: Brain Connectivity Toolbox is related to: FieldTrip is related to: BALSA has parent organization: Washington University in St. Louis; Missouri; USA has parent organization: NIH Human Connectome Project has parent organization: University of Minnesota Twin Cities; Minnesota; USA is parent organization of: WU-Minn HCP 500 Subjects MR and MEG Release |
healthy, twin | NIH Blueprint for Neuroscience Research ; NIMH MH091657 |
PMID:23684880 PMID:23702419 PMID:23668970 PMID:23702415 PMID:23702418 PMID:23707591 PMID:23702417 PMID:23684877 |
Free, Freely available | nlx_143922 | http://www.nitrc.org/projects/hcp_wuminn, http://www.humanconnectome.org/documentation/S500/ | SCR_008749 | HCP WU-Minn Consortium, WU-Minn: Human Connectome Project, HUMAN CONNECTOME PROJECT WU-Minn Consortium, WU-Minn Consortium: Human Connectome Project, WU-Minn Consortium: HCP | 2026-08-29 11:23:33 | 1095 | |||
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Mount Sinai Alzheimer's Disease Research Center Resource Report Resource Website |
Mount Sinai Alzheimer's Disease Research Center (RRID:SCR_008780) | Mount Sinai ADRC | biomaterial supply resource, brain bank, material resource, tissue bank | A research facility and clinical program that is dedicated to the study and the treatment of both normal aging and Alzheimer's disease. This facility will accommodate requests for its resources (for example, data or tissue) from investigators that are not funded by the ADRC. Their team is composed of experts in geriatrics, geriatric psychiatry and psychology, neurology, pathology, and radiology. All team members work to provide services to those with memory disorders. This center sponsors educational programs for healthcare professionals and community groups. Data from the ADRC cores are available to all ADRC investigators after approval from the PI who collected the data. Data generated by the ADRC cores are communicated to the National Alzheimer's Coordinating Center (NACC) and can be available through them. Tissue can be distributed after approval of the Tissue Allocation Committee, and can be used for further research. | normal aging, alzheimer's disease, late adult human, memory disorder, memory, dementia, healthy, brain tissue, brain, tissue, paraffin embedded, block, stain, clinical |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Icahn School of Medicine at Mount Sinai; New York; USA |
Alzheimer's disease, Aging, Healthy | NIA | Public / Collaborator: The ADRC at Mount Sinai School of Medicine is receptive to requests of ADRC resources (data, Tissue, And so on). The ADRC welcomes requests for tissue from Investigators not currently funded by the ADRC. Tissues needed for conduct of ADRC projects are distributed directly to PIs. Distribution of tissue will be made on a collaborative basis only and determined on a case by case basis by the Tissue Allocation Committee. | nlx_144162 | SCR_008780 | Mount Sinai School of Medicine ADRC, Mount Sinai School of Medicine Alzheimer's Disease Research Center, Mount Sinai Alzheimer's Disease Research Center | 2026-08-29 11:23:25 | 0 | |||||
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3DBar Resource Report Resource Website 1+ mentions |
3DBar (RRID:SCR_008896) | 3dBAR | analysis service resource, atlas, data or information resource, production service resource, reference atlas, service resource, software resource | Software package for reconstructing three-dimensional models of brain structures from 2-D delineations using a customizable and reproducible workflow. 3dBAR also works as an on-line service (http://service.3dbar.org) offering a variety of functions for the hosted datasets: * downloading reconstructions of desired brain structures in predefined quality levels in various supported formats as well as created using customizable settings, * previewing models as bitmap thumbnails and (for webGL enabled browsers) interactive manipulation (zooming, rotating, etc.) of the structures, * downloading slides from available datasets as SVG drawings. 3dBAR service can also be used by other websites or applications to enhance their functionality. * Operating System: Linux * Programming Language: Python * Supported Data Format: NIfTI-1, Other Format, VRML | 3d, reconstruction, brain structure, brain, algorithm or reusable library, web service, atlas application, three dimensional display, spinal cord, sensory system, waxholm space |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: Scalable Brain Atlas is related to: Allen Mouse Brain Reference Atlas is related to: Waxholm Space is related to: Allen Institute for Brain Science has parent organization: Nencki Institute of Experimental Biology; Warsaw; Poland |
PMID:22227717 | GNU General Public License | nlx_151380 | http://www.nitrc.org/projects/bar3d, http://service.3dbar.org, http://www.3dbar.org:8080/, http://3dbar.org | SCR_008896 | 3D BAR, 3d Brain Atlas Reconstructor | 2026-08-29 11:23:35 | 5 | |||||
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Michigan Alzheimer's Disease Center Brain Bank Resource Report Resource Website |
Michigan Alzheimer's Disease Center Brain Bank (RRID:SCR_008774) | MADC | biomaterial supply resource, brain bank, material resource, tissue bank | An organization that provides scientists with human tissue from Alzheimer's patients and patients with related brain disorders. Brain tissue is collected from research studies at the University of Michigan, as well as other research centers, and are donated by the families of the patients or the participants themselves. Tissues that are present in the Brain Bank are pre-characterized by pathologists and can be provided to researchers upon request. | alzheimer's disease, dementia, late adult human, brain, tissue, brain tissue, autopsy, brain donation, clinical data |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Michigan Alzheimer's Disease Center |
Alzheimer's disease, Dementia, Aging | Available to research staff upon request | nlx_144107 | http://www.med.umich.edu/alzheimers/research/brain_bank.htm | SCR_008774 | MADC Brain Bank | 2026-08-29 11:23:12 | 0 | |||||
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Institute for Basic Research in Developmental Disabilities Resource Report Resource Website |
Institute for Basic Research in Developmental Disabilities (RRID:SCR_008806) | IBR, NYS IBR, NYS-OPWDD IBR | biomaterial supply resource, brain bank, material resource, tissue bank | A research arm of the New York State Office for People with Developmental Disabilities (OPWDD), which conducts basic and clinical research into the causes, treatment, and prevention of intellectual disabilities and other developmental disabilities. The goals of the IBR's research, services and education program are designed to provide prevention, earlier detection, and improved treatment of intellectual disabilities and other developmental disabilities. This research program has a total of 46 laboratories over 7 departments. These programs include the George A. Jervis Clinic (a tertiary-level diagnostic and research clinic), the Specialty Clinical Laboratories (conduct specialty testing for genetic, metabolic, neurodegenerative disorders), and the Comprehensive Genetic Disease Program at Richmond County (provides genetics and genetic counseling services). This institute provides educational activities in the graduate studies program, and the Programs in Developmental Neuroscience and Developmental Disabilities (PDNDD). The PDNDD collaborates with the faculty from the City University of New York and the State University of New York. The IBR staff regularly conducts public education workshops and professional seminars about developmental disabilities. | brain tissue, brain, tissue, developmental disability, late adult human, alzheimer's disease, autism, fragile x syndrome, taurine, fetal alcohol syndrome, batten disease, phenylketonuria, fetal development, down's syndrome, infant, development, biochemistry, neurobiology, genetics, molecular biology, neurochemistry, psychology, neuroscience |
is listed by: One Mind Biospecimen Bank Listing has parent organization: NYS Office for People With Developmental Disabilities |
Developmental disability, Aging | nlx_144385 | http://www.opwdd.ny.gov/ws/ws_ibr_resources.jsp | SCR_008806 | NYS-OPWDD: Institute for Basic Research in Developmental Disabilities, New York State Institute for Basic Research in Developmental Disabilities | 2026-08-29 11:23:13 | 0 | ||||||
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MUSC Center on Aging Campbell Neuropathology Laboratory Resource Report Resource Website 1+ mentions |
MUSC Center on Aging Campbell Neuropathology Laboratory (RRID:SCR_008826) | MUSC Center on Aging Neuropathology Lab | biomaterial supply resource, brain bank, material resource, tissue bank | A brain bank and biospecimen repository that provides research materials to clinicians, scientists and pathologists in South Carolina. The bank provides both control and diseased biospecimens and brain tissue needed for research in Alzheimer's disease, Parkinson's disease and other related neurological disorders. The Campbell Laboratory coordinates the brain tissue donation program, provides post-mortem confirmation of a patient having neurological disorders, and leads research trials. Any South Carolina resident can choose to sign up as a tissue donor and have their brain tissue donated post-mortem to be used for neurological disorder research. The tissue bank will process and analyze these tissue samples and send the results to the deceased person's family. | brain tissue, brain, tissue, alzheimer's disease, parkinson's disease, neurological disorder, stroke, dementia, normal control, late adult human, clinical trial |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Medical University of South Carolina Center on Aging |
Alzheimer's disease, Parkinson's disease, Neurological disorder, Stroke, Aging, Dementia | Account required | nlx_144505 | http://academicdepartments.musc.edu/brainbank/ | SCR_008826 | MUSC Center on Aging Carroll A. Campbell Jr. Neuropathology Laboratory, Carroll A. Campbell Jr. Neuropathology Laboratory (Brain Bank), Medical University of South Carolina Center on Aging Carroll A. Campbell Jr. Neuropathology Laboratory, Carroll A. Campbell Jr. Neuropathology Laboratory at MUSC, Carroll A. Campbell Jr. Neuropathology Laboratory | 2026-08-29 11:23:34 | 2 | |||||
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MassGeneral Institute for Neurodegenerative Disease Resource Report Resource Website 1+ mentions |
MassGeneral Institute for Neurodegenerative Disease (RRID:SCR_008746) | MIND | biomaterial supply resource, brain bank, material resource, tissue bank | An institute whose mission is to translate laboratory discoveries into prevention, treatment and cures for Alzheimer's, ALS, Huntington's, Parkinson's and other neurodegenerative diseases. MIND seeks to accelerate therapies that lessen the toll of disease on patients and families. Researchers of the institute collaborate, strategize, and share technology to find treatment for these diseases. As promising leads are developed in one area, they are tested in the other neurodegenerative disorders. | memory disorder, movement disorder, neuromuscular disease, alzheimer's disease, amyotrophic lateral sclerosis, huntington's disease, parkinson's disease, neurodegenerative disease, brain tissue, tissue, brain |
is listed by: One Mind Biospecimen Bank Listing has parent organization: Harvard Medical School; Massachusetts; USA |
Memory disorder, Movement disorder, Neuromuscular Disease, Alzheimer's disease, Amyotrophic Lateral Sclerosis, Huntington's disease, Parkinson's disease, Neurodegenerative disease, Aging | Available to the research community | nlx_144103 | http://www.massgeneral.org/mind/ | SCR_008746 | Massachusetts General Institute for Neurodegenerative Disease, Massachusetts General Hospital Institute for Neurodegenerative Disease | 2026-08-29 11:23:11 | 2 | |||||
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BrainPeps Resource Report Resource Website 1+ mentions |
BrainPeps (RRID:SCR_008851) | Brainpeps | data or information resource, data repository, database, service resource, storage service resource | Database of blood-brain barrier properties of peptides including structure, method, responses, physicochemical properties and related literature. The database is linked to a manuscript entitled Brainpeps: the blood-brain barrier peptide database, in which the BBB methods and responses are clarified and correlated to each other. Data may be submitted for addition to the database. | peptide, intravenous injection, efflux study, immortal cell line, brain slice, ultracentrifugation, bui method, capillary depletion, iam-hplc, indicator diffusion, bmec, shake flask, non-cerebral cell line, in vitro equilibrium dialysis, microdialysis, imaging techniques, quantitative autoradiography, antinociception, hplc, in situ brain perfusion, (co)-culture, mbua, ultrafiltration, cisternal puncture, bei method, gibbs adsorption isotherm, pampa, blood-brain barrier, brain, permeability, distribution, data set |
is listed by: 3DVC has parent organization: Ghent University; Ghent; Belgium |
Institute for the Promotion of Innovation through Science and Technology in Flanders IWT-Vlaanderen 73402 | PMID:22205159 | Acknowledgement requested, The community can contribute to this resource | nlx_149082 | SCR_008851 | Brain Peps | 2026-08-29 11:23:26 | 2 | |||||
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Roadmap Epigenomics Project Resource Report Resource Website 100+ mentions |
Roadmap Epigenomics Project (RRID:SCR_008924) | Roadmap Epigenomics Project | consortium, data or information resource, organization portal, portal, project portal | THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 11, 2022. Project for human epigenomic data from experimental pipelines built around next-generation sequencing technologies to map DNA methylation, histone modifications, chromatin accessibility and small RNA transcripts in stem cells and primary ex vivo tissues selected to represent normal counterparts of tissues and organ systems frequently involved in human disease. Consortium expects to deliver collection of normal epigenomes that will provide framework or reference for comparison and integration within broad array of future studies. Consortium is also committed to development, standardization and dissemination of protocols, reagents and analytical tools to enable research community to utilize, integrate and expand upon this body of data. | epigenomics, genome, genetic variation, gene regulation, genomics, stem cell, primary cell, tissue, blood, lung, heart, gastrointestinal tract, brain, embryonic stem cell, fetus, adult, cell, epigenome, methylome, chip-seq, rna, breast, muscle, connective, gastrointestinal, genitourinary, fat, hematopoietic stem cell, thymus, spleen, placenta, kidney, adrenal, induced pluripotent stem cell, skin, angular gyrus, anterior caudate, cingulate gyrus, hippocampus, inferior temporal lobe, mid frontal lobe, substantia nigra, dna methylation, histone modification, chromatin, rna transcript, dna, methylation, histone, data set |
is used by: NIF Data Federation is used by: VizHub is used by: Integrated Data Annotation is listed by: 3DVC is listed by: OMICtools is related to: NCBI Epigenomics is related to: Gene Expression Omnibus is related to: Spark is related to: Deep Blue Epigenomic Data Server has parent organization: NIH Common Fund is parent organization of: Human Epigenome Atlas is parent organization of: WashU Epigenome Browser is parent organization of: VizHub |
PMID:22690667 PMID:20944595 PMID:20944597 |
THIS RESOURCE IS NO LONGER IN SERVICE | nlx_151644, OMICS_01564 | SCR_008924 | Epigenomics Program, Common Fund Epigenomics, NIH Roadmap Epigenomics Program, NIH Roadmap Epigenomics Project, Common Fund Epigenomics Program, NIH Common Fund Epigenomics, NIH Common Fund Epigenomics Program, Common Fund Roadmap Epigenomics Program | 2026-08-29 11:23:15 | 323 | ||||||
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DOTS WM tract segmentation Resource Report Resource Website 100+ mentions |
DOTS WM tract segmentation (RRID:SCR_009459) | DOTS | data processing software, image analysis software, segmentation software, software application, software resource | A fast, scalable tool developed at the Johns Hopkins University to automatically segment the major anatomical fiber tracts within the human brain from clinical quality diffusion tensor MR imaging. With an atlas-based Markov Random Field representation, DOTS directly estimates the tract probabilities, bypassing tractography and associated issues. Overlapping and crossing fibers are modeled and DOTS can also handle white matter lesions. DOTS is released as a plug-in for the MIPAV software package and as a module for the JIST pipeline environment. They are therefore cross-platform and compatible with a wide variety of file formats. | magnetic resonance, diffusion tensor mr imaging, dti, fiber tract, brain |
is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is related to: MIPAV: Medical Image Processing and Visualization is related to: JIST: Java Image Science Toolkit has parent organization: Johns Hopkins University; Maryland; USA |
NIDA K25DA025356 | PMID:21718790 | Free | nlx_155605 | SCR_009459 | Diffusion-Oriented Tract Segmentation White Matter tract segmentation, Diffusion-Oriented Tract Segmentation | 2026-08-29 11:23:18 | 116 | |||||
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Baby Brain Toolkit Resource Report Resource Website |
Baby Brain Toolkit (RRID:SCR_009440) | BTK | data processing software, image analysis software, image processing software, software application, software resource, software toolkit | Software toolkit developed for the fbrain project that consists of several image processing tools: image reconstruction, image denoising, image segmentation, tractography etc., for a better understanding of fetal brain development. | computational neuroscience, magnetic resonance, fetus, brain, development, mri | is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) | ERC | PMID:23036854 | CeCILL license, v2 | nlx_155584 | SCR_009440 | BTK : Baby Brain Toolkit | 2026-08-29 11:23:36 | 0 | |||||
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Allen Institute Mouse Diversity Study Resource Report Resource Website 1+ mentions |
Allen Institute Mouse Diversity Study (RRID:SCR_008009) | Allen Mouse Diversity | atlas, data or information resource, database, expression atlas | A database, and associated atlas, that characterizes gene expression across genetic backgrounds and sex, expanding beyond the adult male C57BL/6J reference brain comprising the Allen Mouse Brain Atlas to include seven strains of male mice and female C57BL/6J mice. Gene expression was detected using colorimetric RNA in situ hybridization (ISH) that provides cellular level anatomic resolution. ISH data are searchable and organized by gene, strain, or sex. | drug target, gene expression, genetic background, adult, brain, developing, diversity, g protein-coupled receptor, ion channel, mouse, neurotransmitter, rna in situ hybridization, sex, molecular neuroanatomy resource, in situ hybridization, male, female, c57bl/6j, comparison |
is listed by: 3DVC has parent organization: Allen Institute for Brain Science |
Free | nif-0000-08695 | SCR_008009 | Mouse Diversity Study | 2026-08-29 11:22:57 | 1 | |||||||
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Animal Imaging Database Resource Report Resource Website |
Animal Imaging Database (RRID:SCR_008002) | AIDB | data or information resource, data repository, database, image repository, service resource, storage service resource |
THIS RESOURCE IS NO LONGER IN SERVICE, documented May 10, 2017. A pilot effort that has developed a centralized, web-based biospecimen locator that presents biospecimens collected and stored at participating Arizona hospitals and biospecimen banks, which are available for acquisition and use by researchers. Researchers may use this site to browse, search and request biospecimens to use in qualified studies. The development of the ABL was guided by the Arizona Biospecimen Consortium (ABC), a consortium of hospitals and medical centers in the Phoenix area, and is now being piloted by this Consortium under the direction of ABRC. You may browse by type (cells, fluid, molecular, tissue) or disease. Common data elements decided by the ABC Standards Committee, based on data elements on the National Cancer Institute''s (NCI''s) Common Biorepository Model (CBM), are displayed. These describe the minimum set of data elements that the NCI determined were most important for a researcher to see about a biospecimen. The ABL currently does not display information on whether or not clinical data is available to accompany the biospecimens. However, a requester has the ability to solicit clinical data in the request. Once a request is approved, the biospecimen provider will contact the requester to discuss the request (and the requester''s questions) before finalizing the invoice and shipment. The ABL is available to the public to browse. In order to request biospecimens from the ABL, the researcher will be required to submit the requested required information. Upon submission of the information, shipment of the requested biospecimen(s) will be dependent on the scientific and institutional review approval. Account required. Registration is open to everyone.. Documented October 4, 2017. A sub-project of the Cell Centered Database (http://ccdb.ucsd.edu) providing a public repository for animal imaging data sets from MRI and related techniques. The public AIDB website provides the ability for browsing, visualizing and downloading the animal subjected MRI data. The AIDB is a pilot project to serve the current need for public imaging repositories for animal imaging data. The Cell Centered Database (CCDB) is a web accessible database for high resolution 2D, 3D and 4D data from light and electron microscopy. The AIDB data model is modified from the basic model of the CCDB where microscopic images are combined to make 2D, 3D and 4D reconstructions. The CCDB has made available over 40 segmented datasets from high resolution magnetic resonance imaging of inbred mouse strains through the prototype AIDB. These data were acquired as part of the Mouse BIRN project by Drs. G. Allan Johnson and Robert Williams. More information about these data can be found in Badea et al. (2009) (Genetic dissection of the mouse CNS using magnetic resonance microscopy - Pubmed: 19542887) |
reconstruction, segmentation, mri, microscopy, brain, magnetic resonance microscopy |
is related to: Integrated Manually Extracted Annotation has parent organization: Cell Centered Database |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-07736 | SCR_008002 | 2026-08-29 11:23:21 | 0 | ||||||||
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Dana Foundation: BrainWeb Resource Report Resource Website |
Dana Foundation: BrainWeb (RRID:SCR_007996) | data or information resource, disease-related portal, patient-support portal, portal, topical portal | BrainWeb provides information and links to validated sites about brain diseases and disorders. These include outside resources reviewed by scientific advisers, as well as articles in Dana publications. Sites listed in BrainWeb detail common brain diseases and disorders, and include general neuroscience and health resources. They offer descriptions of conditions, frequently asked questions, organization contacts, and sources for more information. BrainWeb and its links are suitable for lay readers, including students and educators, as well as people with brain disorders, their families, and caregivers. | alzheimer’s, disease related portal, patient support portal, brain, human, brain disease, brain disorder, general neuroscience, health resource, lay man | has parent organization: Dana Foundation | Aging | Available to the research community, Available for students and educators, Available to patients and caregivers | nif-0000-07310 | SCR_007996 | BrainWeb, Dana Foundation: BrainWeb, The Dana Foundation: BrainWeb | 2026-08-29 11:23:05 | 0 | |||||||
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Connectionist Models of Cognitive, Affective, Brain, and Behavioral Disorders Resource Report Resource Website |
Connectionist Models of Cognitive, Affective, Brain, and Behavioral Disorders (RRID:SCR_008088) | community building portal, data or information resource, portal | THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. This site aims to provide a discussion and source list for connectionist and neural network models of disorders associated with mental or brain conditions. Recent connectionist and neural network models of behavior, information processing patterns, and brain activity present in people with cognitive, affective, brain, and behavioral disorders are reviewed on this web site. Ways that assumptions regarding normal and disordered behavior may be represented in connectionist models are discussed for features of various disorders. Similarities and differences between the models and criteria for their evaluation are presented, and suggestions for inclusion of information which may help to make these models more directly comparable in the future are considered. References to Connectionist Models of Cognitive, Affective, Brain, and Behavioral Disorders include: General Neural Network Information Reviews, General Introductions, and Calls for More Connectionist Models of Mental Disorders Models of Psychopathologies and Psychiatric Disorders Models of Cognitive, Affective, Brain, and Behavioral Disorders Not Associated with Psychopathology Additionally, Web Sites for Neural Network Modelers of Disorder are provided. | affective, articles, behavior, behavioral disorders, bibliographies, brain, brain activity, cognitive, connectionist, disordered, disorders, human, information processing, keywords: connectionist, mental, models, neural network, normal, psychopathologies, research labs | has parent organization: Carnegie Mellon University; Pennsylvania; USA | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-10775 | SCR_008088 | Brain, Connectionist Models of Cognitive, Affective, and Behavioral Disorders | 2026-08-29 11:23:07 | 0 | ||||||||
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Allen Human Brain Atlas: BrainSpan (Atlas of the Developing Brain) Resource Report Resource Website 100+ mentions |
Allen Human Brain Atlas: BrainSpan (Atlas of the Developing Brain) (RRID:SCR_008083) | BrainSpan | atlas, data or information resource, expression atlas, reference atlas | Atlas of developing human brain for studying transcriptional mechanisms involved in human brain development. Consists of RNA sequencing and exon microarray data profiling up to sixteen cortical and subcortical structures across full course of human brain development, high resolution neuroanatomical transcriptional profiles of about 300 distinct structures spanning entire brain for four midgestional prenatal specimens, in situ hybridization image data covering selected genes and brain regions in developing and adult human brain, reference atlas in full color with high resolution anatomic reference atlases of prenatal (two stages) and adult human brain along with supporting histology, magnetic resonance imaging (MRI) and diffusion weighted imaging (DWI) data. | anatomic, gene expression, molecular neuroanatomy, in situ hybridization, human, medial prefrontal cortex, primary visual cortex, hippocampus, amygdala, ventral striatum, postnatal, development, brain development, transcription, brain, rna sequencing, exon microarray, developmental stage, male, female, mrna transcript, developing human, adult human, fetal brain, fetus, histology, transcriptome, magnetic resonance imaging, diffusion tensor imaging, annotation, neuroanatomy, prenatal, development, fiber tract, microarray, mri, dti, methylation, microrna, mrf |
is used by: BICCN is related to: NIH Blueprint NHP Atlas is related to: Allen Developing Mouse Brain Atlas is related to: Developmental Human Brain Atlas Ontology (DHBA) is related to: Developing Human Brain Atlas version 2 (DHBAv2) has parent organization: Allen Institute for Brain Science is parent organization of: BrainSpan is parent organization of: BrainSpan |
Neurodevelopmental disorder, Neuropsychiatric disease, Schizophrenia, Epilepsy, Parkinson's disease, Alzheimer's disease, Neurological disease, Autism | NIMH RC2 MH089921; NIMH RC2 MH089929; NIMH RC2 MH090047 |
Free, Freely available | nif-0000-10626 | http://www.developinghumanbrain.org/ | SCR_008083 | BrainSpan - Atlas of the Developing Human Brain, BrainSpan: Atlas of the Developing Human Brain, NIMH Transcriptional Atlas of Human Brain Development | 2026-08-29 11:22:59 | 465 | ||||
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University of Southern California Brain Project Resource Report Resource Website 1+ mentions |
University of Southern California Brain Project (RRID:SCR_008044) | data or information resource, database, software resource | The USC Brain Project is engaged in the effort to develop new tools and methodologies for neuroinformatics in modeling neural mechanisms of visuomotor coordination and exploring the evolution of the human language-ready brain, as well as conducting work in both neural modeling and database construction in relation to rehabilitation after stroke. Sponsors: USCBP is funded by the University of Southern California. | brain, human, neural, neuroinformatics, stroke, visuomotor coordination, language | has parent organization: University of Southern California; Los Angeles; USA | nif-0000-10531 | http://neuroinformatics.usc.edu/mediawiki/index.php/Main_Page | SCR_008044 | USCBP | 2026-08-29 11:23:06 | 1 | ||||||||
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Integrative Neuroscience Initiative on Alcoholism Resource Report Resource Website |
Integrative Neuroscience Initiative on Alcoholism (RRID:SCR_008042) | INIA | bibliography, data or information resource, experimental protocol, narrative resource, portal, slide, topical portal | Consortium set out to identify the molecular, cellular, and behavioral neuroadaptations that occur in the brain reward circuits associated with the extended amygdala and its connections. It is hypothesized that genetic differences and/or neuroadaptations in this circuitry are responsible for the individual differences in vulnerability to the excessive consumption of alcohol. Chronic exposure to alcohol results in neuroadaptive phenomena, including tolerance, sensitization, dependence, withdrawal, loss of control of drinking, and relapse that contribute to the development of excessive alcohol consumption. The INIA has the following goals: 1) To establish animal models to study specific neurobiological targets for vulnerability that lead to excessive consumption of alcohol at the molecular, cellular and neural circuit level of analysis, 2) To identify specific clusters of genes whose expression is regulated by alcohol and which are responsible for any given model of excessive alcohol consumption using gene expression arrays, differential display, mutagenesis directed at specific brain areas, and the development of new informatics tools to analyze and interpret gene expression, cellular circuitry and brain circuitry data with the use of transgenic and knockout approaches, and 3) To attract new and innovative investigators to the field of alcohol research by recruiting individuals for development of U01 grants and pilot projects and by developing online interactive capacity among INIA scientists and others, and by making the neuroinformatics integrated data sets accessible, searchable and interactive with other databases for all scientists interested in alcoholism research. The structure of INIA is envisioned as two domains, Dependence-induced drinking and Binge drinking, comprised of multiple U01 research grants. The flow of information within each domain moves from molecular, to cellular, to neurocircuitry levels of analysis. These U01s share information with the core facilities, which act as data depositories. The Administrative Core coordinates the flow of information among the Domains and Cores and disseminates the information back to the U01s. A Pilot Project program will identify exciting new areas for research and the continual recruitment of new investigators to the alcohol field. The INIA program is directed by an Administrative Core in close cooperation with the Animal Models, Gene Array and Neurocircuitry Cores via a Steering Committee and with the continual advice of the Scientific Advisory Committee. | extended amygdala, gene array, gene expression, genes, genetic, alcoholism, alcohol research, animal models, binge drinking, brain, brain circuitry, cellular circuitry, dependence, dependence-induced drinking, drosophila, genotyping, grants, human, imaging, knockout, loss of control, mapping, methodologies, mouse, neural circuit, neuroadaptations, neurocircuitry, neuroinformatics, neuroscience, pilot, rat, relapse, reward circuits, rnai, sensitization, tolerance, transgenic, withdrawal |
has parent organization: Scripps Research Institute is parent organization of: INIA19 Primate Brain Atlas |
NIAAA | nif-0000-10258 | SCR_008042 | 2026-08-29 11:23:23 | 0 | ||||||||
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National Institute on Aging, Division of Neuroscience Resource Report Resource Website |
National Institute on Aging, Division of Neuroscience (RRID:SCR_008257) | data or information resource, funding resource, narrative resource, portal, topical portal | A funding resource that supports the research and training for understanding the structure and function of the aging nervous system, with an emphasis on studies involving Alzheimer's disease and age-related dementia. There is an emphasis on brain-behavior relationships. This program is composed of three branches: Neurobiology, Neuropsychology, and Dementias of Aging. The overall aim of this program is to understand the aging nervous system to minimize mental decline and improve the lives of older patients. This resource also includes links to sites for Alzheimer's disease (AD) studies that include: specimen repositories, genetic materials, bio-markers, data, policies on NIA and AD genetics sharing plans, and additional aging or other AD related links. | epidemiological, alzheimer's disease, brain, clinical, dementia, nervous system, neurobiology, neuropsychology, pathological, research, | Aging | R21-Exploratory/Development Grants ; NIH Neuroscience Blueprint initiatives |
nif-0000-22438 | http://www.nia.nih.gov/ResearchInformation/ExtramuralPrograms/NeuroscienceOfAging/ | SCR_008257 | NIA Division of Neuroscience, NIA DN, National Institute on Aging Division of Neuroscience, National Institute on Aging DN | 2026-08-29 11:23:11 | 0 |
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Welcome to the Neuroscience Information Framework Project, designed to serve the biomedical research community. NIF maintains the largest searchable collection of neuroscience data, the largest catalog of biomedical resources, and the largest ontology for neuroscience on the web. We welcome all feedback and suggestions and are actively looking for resource providers to make their resources accessible through NIF. Learn about the tools available to help you share your data and discover a dynamic inventory of Web-based neuroscience resources.
