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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
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Urologic Diseases in America Resource Report Resource Website |
Urologic Diseases in America (RRID:SCR_006644) | UDA | human subject report | A report incorporating current and retrospective data on all aspects of the epidemiology, practice patterns, costs, and impact of urologic diseases in the United States and is intended for use by public officials, nongovernment organizations, the media, academic researchers, health professionals, and the public. The UDA compendium consists of data tables annotated in chapters that amplify the data analyses. The objectives of the UDA project include: secondary data analyses of: changes in the overall healthcare burden for individual urologic diseases, in physician practice patterns for each urologic disease, and in demographics of persons with urologic disease, the impact of specific urologic diseases, especially diseases of the prostate, on the minority populations of the U.S., and documentation of new and evolving therapies for urologic disease and their cost. | epidemiology, urology, diagnosis, risk factor, prevalence, treatment, urological disease, report, practice pattern, data table, data analysis, prostate |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources has parent organization: National Kidney and Urologic Diseases Information Clearinghouse |
Urologic disease | National Institute of Diabetes and Digestive and Kidney Diseases | Public, Acknowledgement requested | nlx_152720 | SCR_006644 | Urologic Diseases in America Compendium, UDA Compendium | 2026-09-12 12:56:43 | 0 | |||||
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National Diabetes Information Clearinghouse Resource Report Resource Website |
National Diabetes Information Clearinghouse (RRID:SCR_006702) | NDIC | data or information resource, narrative resource, resource, service resource, training material | Information dissemination service of the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) established to increase knowledge and understanding about diabetes among patients, health care professionals, and the general public: online, in booklets and fact sheets, by email, and over the phone. To carry out this mission, NDIC works closely with NIDDK''''s Diabetes Research and Training Centers; the National Diabetes Education Program (NDEP); professional, patient, and voluntary associations; Government agencies; and State health departments to identify and respond to informational needs about diabetes and its management. NDIC provides the following informational products and services: * Response to inquiries about diabetes, ranging from information about available patient and professional education materials to statistical data. By phone (8:30 a.m. to 5 p.m. eastern time, M-F), fax, mail, and email. * Publications about diabetes, provided free of copyright, in varying reading levels. Available online or as booklets and brochures. NDIC also sends publications to health fairs and community events. * Referrals to health professionals through the National Library of Medicine''''s MEDLINEplus includes a consumer-friendly listing of organizations that will assist you in your search for physicians and other health professionals. * Exhibits at professional meetings specific to diabetes, as well as cross-cutting professional meetings. NDIC exhibits at 12 professional meetings, each year, including American Diabetes Association Postgraduate Course, American College of Physicians, CDC Diabetes Translation Conference, American Academy of Physician Assistants, American Diabetes Association, American Association of Diabetes Educators, and American Dietetic Association. | medical, nutrition, disease-related portal, statistics, digestive, kidney, urologic, publication, medicine, health, treatment |
is related to: NIDDK Information Network (dkNET) has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is parent organization of: Diabetes in America is parent organization of: Diabetes Control and Complications Trial |
Diabetes | NIDDK | Public, Free | nlx_152709 | SCR_006702 | National Diabetes Information Clearinghouse (NDIC) | 2026-09-12 12:56:44 | 0 | |||||
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National Endocrine and Metabolic Diseases Information Service Resource Report Resource Website |
National Endocrine and Metabolic Diseases Information Service (RRID:SCR_006681) | NEMDIS | data or information resource, narrative resource, resource, service resource, training material | Information dissemination service of the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) providing information about endocrine and metabolic diseases in easy-to-understand language: online, in booklets and fact sheets, by email, and over the phone to patients, health professionals and the public. The NEMDIS provides the following informational products and services: * Response to inquiries about endocrine and metabolic diseases, ranging from information about available patient and professional education materials to referrals to patient support organizations. Assistance is available by phone (8:30 a.m. to 5 p.m. eastern time, M-F), fax, mail, and email. * Publications about endocrine and metabolic diseases, provided free of copyright, in varying reading levels. Available online or in hard copy. NEMDIS also sends publications to health fairs and community events. * Referrals to health professionals through the National Library of Medicine''''s MEDLINEplus, which includes a consumer-friendly listing of organizations to assist in the search for physicians and other health professionals. | endocrine, metabolic, statistics, publication |
is related to: NIDDK Information Network (dkNET) has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Endocrine disease, Metabolic disease | NIDDK | Free, Public | nlx_152713 | SCR_006681 | 2026-09-12 12:56:43 | 0 | ||||||
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Gastroparesis Clinical Research Consortium Resource Report Resource Website |
Gastroparesis Clinical Research Consortium (RRID:SCR_006673) | GpCRC | clinical trial, data or information resource, disease-related portal, portal, research forum portal, resource, topical portal | Perform clinical, epidemiological, and therapeutic research in gastroparesis and provide an infrastructure that can rapidly and efficiently design and conduct clinical trials for effective medical, surgical, or other interventions to improve treatment of patients with gastroparesis. The GpCRC studies comprise well characterized individuals with diabetic, surgical, and idiopathic gastroparesis. | etiology, natural history, therapy, treatment |
is listed by: ClinicalTrials.gov is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources has parent organization: Johns Hopkins University; Maryland; USA |
Gastroparesis | NIDDK | nlx_152831 | SCR_006673 | Gastroparesis Clinical Research Consortium (GpCRC) | 2026-09-12 12:56:43 | 0 | ||||||
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National Hematologic Diseases Information Service Resource Report Resource Website |
National Hematologic Diseases Information Service (RRID:SCR_006817) | NHDIS | data or information resource, narrative resource, resource, service resource, training material | Information dissemination service of the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) providing information about certain hematologic diseases in easy-to-understand language: online, in booklets and fact sheets, by email, and over the phone to patients, health professionals and the public. The NHDIS provides the following informational products and services: * Response to inquiries about hematologic diseases, ranging from information about available patient and professional education materials to referrals to patient support organizations. Assistance is available by phone (8:30 a.m. to 5 p.m. eastern time, M-F), fax, mail, and email. * Publications about hematologic diseases, provided free of copyright, in varying reading levels. Available online or in hard copy. NHDIS also sends publications to health fairs and community events. * Referrals to health professionals through the National Library of Medicine''''s MEDLINEplus, which includes a consumer-friendly listing of organizations to assist in the search for physicians and other health professionals. | hematology, statistics, publication, medical, nutrition |
is related to: NIDDK Information Network (dkNET) has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Hematologic disease | NIDDK | Free, Public | nlx_152714 | SCR_006817 | 2026-09-12 12:56:46 | 0 | ||||||
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AASK Clinical Trial and Cohort Study Resource Report Resource Website |
AASK Clinical Trial and Cohort Study (RRID:SCR_006985) | AASK Cohort Study | clinical trial, data or information resource, disease-related portal, portal, research forum portal, resource, topical portal | Clinical trial investigating whether a specific class of antihypertensive drugs (beta-adrenergic blockers, calcium channel blockers, or angiotensin converting enzyme inhibitors) and/or the level of blood pressure would influence progression of hypertensive kidney disease in African Americans. The initiative consisting of 21 clinical centers and a data-coordinating center is followed by a Continuation of AASK Cohort Study to investigate the environmental, socio-economic, genetic, physiologic, and other co-morbid factors that influence progression of kidney disease in a well-characterized cohort of African Americans with hypertensive kidney disease. Only patients who were previously in the randomized trial are eligible for the cohort study. A significant discovery was made in the treatment strategy for slowing kidney disease caused by hypertension. Angiotensin-converting enzyme (ACE) inhibitors, compared with calcium channel blockers, were found to slow kidney disease progression by 36 percent, and they drastically reduced the risk of kidney failure by 48 percent in patients who had at least one gram of protein in the urine, a sign of kidney failure. ACE inhibitors have been the preferred treatment for hypertension caused by diabetes since 1994; however, calcium channel blockers have been particularly effective in controlling blood pressure in African Americans. The AASK study now recommends ACE inhibitors to protect the kidneys from the damaging effects of hypertension. The Continuation of AASK Cohort Study will be followed at the clinical centers. The patients will be provided with the usual clinical care given to all such patients at the respective centers. Baseline demographic information, selected laboratory tests, and other studies are being obtained at the initiation of the Continuation Study. The patients will be seen quarterly at the centers, and some selected studies done at these visits. Samples will be obtained and stored for additional studies and analyses at a later date. | african american, blood pressure, beta-adrenergic blocker, calcium channel blocker, angiotensin converting enzyme inhibitor, environment, socio-economic, genetic, physiology, co-morbid factor, gene, adult human, antihypertensive drug, clinical, treatment, longitudinal, demographics, laboratory test, biospecimen, biomaterial supply resource |
is listed by: One Mind Biospecimen Bank Listing is related to: NIDDK Information Network (dkNET) is related to: Chronic Renal Insufficiency Cohort Study |
End-stage renal disease, Kidney failure, Kidney disease, Hypertension, Hypertensive kidney disease | NIDDK | nlx_152750 | SCR_006985 | African American Study of Kidney Disease and Hypertension (AASK) Clinical Trial and Cohort Study, African American Study of Kidney Disease and Hypertension Clinical Trial and Cohort Study, Continuation of AASK Cohort Study, African American Study of Kidney Disease and Hypertension | 2026-09-12 12:56:48 | 0 | ||||||
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IntAct Resource Report Resource Website 1000+ mentions |
IntAct (RRID:SCR_006944) | IntAct | data or information resource, data repository, database, service resource, storage service resource | Open source database system and analysis tools for molecular interaction data. All interactions are derived from literature curation or direct user submissions. Direct user submissions of molecular interaction data are encouraged, which may be deposited prior to publication in a peer-reviewed journal. The IntAct Database contains (Jun. 2014): * 447368 Interactions * 33021 experiments * 12698 publications * 82745 Interactors IntAct provides a two-tiered view of the interaction data. The search interface allows the user to iteratively develop complex queries, exploiting the detailed annotation with hierarchical controlled vocabularies. Results are provided at any stage in a simplified, tabular view. Specialized views then allows "zooming in" on the full annotation of interactions, interactors and their properties. IntAct source code and data are freely available. | protein domain, motif, protein interaction, molecular interaction, interaction, protein, binary interaction, complex, data set, protein-protein interaction, pathway, small molecule-protein, nucleic acid-protein, small molecule, nucleic acid, protein binding, chromatin, cancer, apoptosis, molecular biology, virus, source code, isoform, gold standard |
is used by: ChannelPedia is used by: MINT is used by: Pathway Analysis Tool for Integration and Knowledge Acquisition is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: 3DVC is listed by: re3data.org is listed by: OMICtools is related to: 3D-Interologs is related to: IMEx - The International Molecular Exchange Consortium is related to: MPIDB is related to: TissueNet - The Database of Human Tissue Protein-Protein Interactions is related to: InteroPorc is related to: Interaction Reference Index is related to: Pathway Commons is related to: ConsensusPathDB is related to: FlyMine is related to: IMEx - The International Molecular Exchange Consortium is related to: Integrated Molecular Interaction Database is related to: VirHostNet: Virus-Host Network is related to: PSICQUIC Registry is related to: UniProt is related to: SIB Swiss Institute of Bioinformatics is related to: I2D is related to: InnateDB is related to: MatrixDB is related to: MBInfo is related to: AgBase is related to: Cardiovascular Gene Ontology Annotation Initiative is related to: PSI-MI is related to: Agile Protein Interactomes DataServer has parent organization: European Bioinformatics Institute works with: IMEx - The International Molecular Exchange Consortium |
European Union contract FP7-HEALTH-2007-223411; European Union contract FP7-HEALTH-2007-200767 |
PMID:24234451 PMID:22121220 PMID:19850723 PMID:17145710 PMID:14681455 |
Apache License, v2, (software), Creative Commons Attribution License, (data), The community can contribute to this resource | OMICS_01918, r3d100010671, nif-0000-03026 | https://doi.org/10.17616/R3QS4R | SCR_006944 | IntAct | 2026-09-12 12:56:48 | 1955 | ||||
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Boston Area Community Health Survey Resource Report Resource Website |
Boston Area Community Health Survey (RRID:SCR_007115) | BACH Survey, BACH | data or information resource, disease-related portal, portal, research forum portal, resource, topical portal | An epidemiologic study being conducted in the Boston metropolitan area to examine the prevalence of symptoms for health problems such as interstitial cystitis, urinary incontinence, benign prostatic hyperplasia, prostatitis, hypogonadism, and sexual function. Of interest to the survey are health disparities and inequalities. BACH is especially concerned with lack of adequate health insurance, lack of access to adequate medical care, and how these problems influence patterns of disease. The study also focuses on social determinants of disease that are over and above the contribution of individual characteristics and risk factors. To achieve a randomly sampled population, four neighborhoods were divided into 12 strata and from them investigators selected census blocks. Households were then randomly selected from the census blocks and sampled to identify eligible study participants. Investigators conduct a two-hour, in-home, bilingual field interview of all eligible participants, looking at symptoms and asking questions about lifestyle, physical activity, alcohol use, nutrition, demographics, and morbidity. They also conduct a detailed inventory of medications, both prescribed and over-the-counter, and take two non-fasting blood samples for hormone, cholesterol, and lipid levels that will be stored for future studies. By the time the study ends, approximately 6,000 men and women, ages 30 to 79, from four Boston area neighborhoods that have density levels proportionate with minority populations will have been interviewed in their homes. One third of the randomly sampled population will be African American; one third, Hispanic; and one third, Caucasian. | prevalence, symptom, epidemiology, health problem, disparity, inequality, health insurance, medical care, disease, social determinant, risk factor, male, female, adult human, middle adult human, late adult human, interview, african-american, hispanic, caucasian, epidemiological study, lifestyle, physical activity, alcohol use, nutrition, demographics, morbidity, medication, blood, hormone, cholesterol, lipid level, biomaterial supply resource |
is listed by: One Mind Biospecimen Bank Listing is related to: NIDDK Information Network (dkNET) has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Urological problem, Interstitial cystitis, Urinary incontinence, Benign prostatic hyperplasia, Prostatitis, Hypogonadism, Sexual dysfunction | NIDDK | nlx_152753 | SCR_007115 | Boston Area Community Health (BACH) Survey | 2026-09-12 12:56:50 | 0 | ||||||
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Knockout Mouse Project Repository Resource Report Resource Website 100+ mentions |
Knockout Mouse Project Repository (RRID:SCR_007318) | KOMP Repository | biomaterial supply resource, material resource, organism supplier | Repository of mouse vectors, ES cells, mice, embryos, and sperm generated by NIH KOMP Mutagenesis Project. In addition, KOMP Repository offers services in support of KOMP products, including ES cell microinjection, vector cloning, post-insertional modification of cloned ES cells, cryopreservation, assisted reproduction techniques (IVF, ICSI) and mouse breeding, pathology services, phenotyping services, etc. KOMP Repository is final component of more than $50 million trans-NIH initiative to increase availability of genetically altered mice and related materials. The University of California, Davis (UC Davis) and Children''s Hospital Oakland Research Institute (CHORI) in Oakland, Calif., are collaborating to preserve, protect, and make available about 8,500 types of knockout mice and related products available to research community. Products are generated by two KOMP mutagenesis teams (CSD consortium and Regeneron Inc). All KOMP products generated by CSD consortium and Regeneron are available through KOMP Repository. Notice as of December 19, 2019: Materials from KOMP Repository have been deposited into MMRRC, including all mouse models and mouse embryonic stem cell lines. Eventually www.komp.org will be sunsetting, and IMSR will remove KOMP Repository listings, since they were double listed in MMRRC. MMRRC will contain the most accurate and up to date resource models. | vector, embryonic stem cell, embryo, sperm, germplasm, gene, breeding, mutagenesis, mutation, frozen, cryopreserved, knockout mouse, germline transmission testing, genotyping, in vitro fertilization, intracytoplasmic sperm injection, pathology, pathology service, phenotyping service, phenotype, phenotyping, FASEB list |
is listed by: One Mind Biospecimen Bank Listing is listed by: NIDDK Information Network (dkNET) has parent organization: University of California at Davis; California; USA has parent organization: Childrens Hospital Oakland Research Institute has parent organization: Knockout Mouse Project is provided by: International Mouse Phenotyping Consortium (IMPC) is provided by: Mutant Mouse Resource and Research Center is provided by: CMMR - Canadian Mouse Mutant Repository is provided by: Jackson Laboratory |
Knock out mouse | For research purposes only | nif-0000-00185 | SCR_007318 | UCDavis KOMP Repository Knockout Mouse Project, KOMP Repository Knockout Mouse Project, UC Davis KOMP Repository Knockout Mouse Project | 2026-09-12 12:56:53 | 302 | ||||||
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Cancer Imaging Archive (TCIA) Resource Report Resource Website 100+ mentions |
Cancer Imaging Archive (TCIA) (RRID:SCR_008927) | TCIA | catalog, data or information resource, data repository, data set, database, image repository, service resource, storage service resource | Archive of medical images of cancer accessible for public download. All images are stored in DICOM file format and organized as Collections, typically patients related by common disease (e.g. lung cancer), image modality (MRI, CT, etc) or research focus. Neuroimaging data sets include clinical outcomes, pathology, and genomics in addition to DICOM images. Submitting Data Proposals are welcomed. | dicom, imaging, ct, pet, pt, x-ray, mri, magnetic resonance, medical, clinical, research, clinical neuroinformatics, computed tomography, dicom, imaging genomics, magnetic resonance, pet, spect, test data, web service, image collection, image, FASEB list |
is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: NeuroImaging Tools and Resources Collaboratory (NITRC) is listed by: DataCite is listed by: re3data.org is listed by: FAIRsharing is affiliated with: BraTumIA (Brain Tumor Image Analysis) is related to: NIH Data Sharing Repositories is related to: NCI Imaging Data Commons has parent organization: Frederick National Laboratory for Cancer Research has parent organization: NCI-Frederick |
Cancer | NCI | Restricted | DOI:10.25504/FAIRsharing.jrfd8y, DOI:10.17616/R3NH0V, DOI:10.7937, nlx_151749, r3d100011559 | http://www.nitrc.org/projects/tcia, http://www.cancerimagingarchive.net/, http://www.cancerimagingarchive.net/primary-data/, https://wiki.cancerimagingarchive.net/display/Public/Collections, https://doi.org/10.17616/R3NH0V, https://doi.org/10.17616/r3NH0V, https://doi.org/10.7937/, https://dx.doi.org/10.7937/, https://fairsharing.org/10.25504/FAIRsharing.jrfd8y, https://doi.org/10.17616/R3NH0V, https://doi.org/10.17616/R3NH0V | SCR_008927 | TCIA, Cancer Imaging Archive, The Cancer Imaging Archive (TCIA), Cancer Imaging Archive (TCIA), The Cancer Imaging Archive | 2026-09-12 12:57:10 | 415 | ||||
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Joslin Diabetes Center Resource Report Resource Website 1+ mentions |
Joslin Diabetes Center (RRID:SCR_009019) | Joslin, JDC | access service resource, data or information resource, disease-related portal, portal, resource, service resource, topical portal | Diabetes research center which provides patient care and performs diabetes research. Its primary aim is to provide a facilitating framework for conducting multi-disciplinary basic and clinical research and to encourage the scientific development of young investigators. | diabetes, patient, clinical, care, research, investigate, disease |
is listed by: NIDDK Information Network (dkNET) is affiliated with: Diabetes Research Centers is related to: Harvard Bioinformatics Core at Joslin Diabetes Center has parent organization: Harvard University; Cambridge; United States is parent organization of: TINSAL-T2D is parent organization of: Joslin Diabetes Center Advanced Genomics and Genetics Core Facility is parent organization of: Joslin Diabetes Center Advanced Microscopy Core Facility is parent organization of: Joslin Diabetes Center Animal Physiology Core Facility is parent organization of: JDC Computer Resource is parent organization of: Joslin Diabetes Center Flow Cytometry Core Facility is parent organization of: JDC Genetics Core is parent organization of: JDC Media Core is parent organization of: Joslin Diabets Center Proteomics Core Facility is parent organization of: JDC Specialized Assay Core is parent organization of: Joslin Diabetes Center Islet Isolation Core is parent organization of: Joslin Diabetes Center Genomics Core is parent organization of: Joslin Diabetes Center Induced Pluripotent Stem Cell Core is parent organization of: Joslin Diabetes Center Enrichment Core is parent organization of: Joslin Diabetes Center Bioinformatics and Biostatistics Core is parent organization of: Joslin Diabetes Center Molecular Phenotyping and Genotyping Core has organization facet: Joslin Diabetes Center Advanced Genomics and Genetics Core Facility has organization facet: Joslin Diabetes Center Advanced Microscopy Core Facility has organization facet: Joslin Diabetes Center Animal Physiology Core Facility has organization facet: Joslin Diabetes Center Bioinformatics and Biostatistics Core has organization facet: Joslin Diabetes Center Enrichment Core has organization facet: Joslin Diabetes Center Flow Cytometry Core Facility has organization facet: Joslin Diabetes Center Induced Pluripotent Stem Cell Core is organization facet of: Diabetes Research Centers |
Diabetes | NIDDK P30 DK036836 | Available to the research community | nlx_152856 | SCR_009019 | Joslin Diabetes Cntr | 2026-09-12 12:57:11 | 2 | |||||
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PubChem BioAssay Resource Report Resource Website 100+ mentions |
PubChem BioAssay (RRID:SCR_010734) | PubChem BioAssay | data or information resource, data repository, database, service resource, storage service resource | Data and information collection and repository for biological activities of small molecules and small interfering RNAs (siRNAs) hosted by the US National Institutes of Health (NIH). Used to select and summarize the bioactivities of tested substances. | collection, compound, substance, bioassay, chemical, structure, biological, activity |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is affiliated with: Entrez is related to: PubChem has parent organization: NCBI |
Intramural Research program of the National Institutes of Health | PMID:19933261 PMID:22140110 |
nlx_93939 | http://pubchem.ncbi.nlm.nih.gov/, https://www.ncbi.nlm.nih.gov/pcassay | SCR_010734 | NCBI PubChem BioAssay, PubChem BioAssay Database | 2026-09-12 12:57:22 | 498 | |||||
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Nutrition and Obesity Research Centers Resource Report Resource Website 10+ mentions |
Nutrition and Obesity Research Centers (RRID:SCR_004131) | NORC | data or information resource, disease-related portal, organization portal, portal, resource, topical portal | Portal to research centers and core facilities specifically support obesity research and better understand the relationship between health and nutrition. | obesity core facility, obesity portal, obesity research center |
is listed by: NIDDK Information Network (dkNET) is listed by: Diabetes Research Centers is affiliated with: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases has organization facet: Boston Nutrition and Obesity Research Centers has organization facet: Nutrition and Obesity Research Centers at Harvard has organization facet: Mid-Atlantic Nutrition Obesity Research Center has organization facet: New York Obesity Nutrition Research Center has organization facet: Pennington Biomedical Research Center Nutrition and Obesity Research Center has organization facet: University of Alabama at Birmingham Nutrition and Obesity Research Center has organization facet: University of California San Francisco Nutrition and Obesity Research Center has organization facet: University of Colorado Anschutz Medical Campus Nutrition and Obesity Research Center has organization facet: University of Michigan Nutrition and Obesity Research Center has organization facet: University of North Carolina at Chapel Hill Nutrition and Obesity Research Center has organization facet: University of Washington Nutrition and Obesity Research Center has organization facet: Washington University St. Louis Nutrition Obesity Research Center |
Obesity, Nutrition-related disease, Eating disorder, Anorexia nervosa, AIDS, Cancer | NIDDK RFA-DK16-006 | Available to the research community | nlx_158684 | SCR_004131 | 2026-09-12 12:56:09 | 46 | ||||||
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Neuroscience Information Framework Resource Report Resource Website 100+ mentions |
Neuroscience Information Framework (RRID:SCR_002894) | NIF | data or information resource, data repository, database, portal, service resource, software application, software development tool, software resource, storage service resource, systems interoperability software | Framework for identifying, locating, relating, accessing, integrating, and analyzing information from neuroscience research. Users can search for and add neuroscience-related resources at NIF portal and receive and RRID to track and cite resources within scientific manuscripts. | neuroscience, bioinformatics, data sharing, metadata standard, ontology, resource, registry, literature, grant, service, software, neuinfo, cerebral circulation, neuron, antibody diversity, neuroanatomy, atlas, bio.tools, bio.tools |
uses: UBERON recommends: Resource Identification Portal is recommended by: National Library of Medicine is listed by: FORCE11 is listed by: OMICtools is listed by: re3data.org is listed by: National Institute of Mental Health is listed by: Debian is listed by: bio.tools is related to: NIDDK Information Network (dkNET) is related to: SciCrunch is related to: SenseLab is related to: Linked Neuron Data is related to: Whole Brain Catalog is related to: FAIR Data Informatics Laboratory is related to: Atlas Ontology Model has parent organization: University of California at San Diego; California; USA is parent organization of: ModelRun is parent organization of: NIF Web Services is parent organization of: NIF Blog is parent organization of: Integrated is parent organization of: Drug Related Gene Database is parent organization of: DISCO is parent organization of: NIF Data Federation is parent organization of: BioMarkers for SMA Data Portal is parent organization of: SciCrunch Registry is parent organization of: NIF Literature is parent organization of: NeuroLex is parent organization of: NIFSTD is parent organization of: Antibody Registry is parent organization of: ConceptMapper is parent organization of: NIF Dysfunction Ontlogy is parent organization of: NIF Subcellular Ontology is parent organization of: OntoQuest is parent organization of: One Mind Biospecimen Bank Listing is parent organization of: ResearchCrossroads is parent organization of: Neuroscience Gateway is parent organization of: NIF Registry Automated Crawl Data |
NIDA HHSN27120080035C; NIH Blueprint for Neuroscience Research |
PMID:18946742 PMID:22434839 |
Free, Freely available | nif-0000-25673, OMICS_01190, biotools:neuroscinfframework, r3d100010106 | https://www.force11.org/node/4695, https://bio.tools/neuroscinfframework, https://bio.tools/neuroscinfframework, https://doi.org/10.17616/R31P4H | SCR_002894 | neuinfo, NIF, neuinfo.org | 2026-09-12 12:55:48 | 129 | ||||
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HemBase Resource Report Resource Website 1+ mentions |
HemBase (RRID:SCR_002880) | data or information resource, database, resource | Database designed for web-based examination of the human erythroid transcriptome. The database is organized to provide a cytogenetic band position, a unique name as well as a concise annotation for each entry. Search queries may be performed by name, keyword or cytogenetic location. Search results are linked to primary sequence data and three major human genome browsers for access to information considered current at the time of each search. Hembase provides interested scientists and clinical hematologists with a genome-based approach toward the study of erythroid biology. Red blood cells in the circulation arise from hematopoietic stem cells that proliferate as erythroid progenitors and differentiate into erythroid precursor cells in response to the hormone erythropoietin. Messenger RNA was isolated from those cells and used to generate gene libraries. Sequencing several thousand expressed sequence tags (EST) from those libraries was then performed. Those EST and sequences encoding several hundred additional genes with known expression in erythroid cells are compiled here as a database of human erythroid gene activity. The database is organized and linked according to the location of these sequences within the human genome., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on January 15,2026. | erythroid, erythroid cell, erythroblast, expressed sequenced tag, transcriptome, gene, erythropoiesis, cytogenetic location, hematology, genome, red blood cell, progenitor cell, precursor cell, chromosome |
is listed by: NIDDK Information Network (dkNET) is listed by: NIDDK Research Resources has parent organization: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases |
Anemia, Erythroleukemia, Malaria, Erythroid cell related disease | NIDDK 1ZIADK025098 | PMID:14681483 PMID:10409428 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-02949 | SCR_002880 | Hembase | 2026-09-12 12:55:48 | 4 | |||||
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WormBase Resource Report Resource Website 1000+ mentions |
WormBase (RRID:SCR_003098) | WB, WB REF, WP | data or information resource, data repository, database, service resource, storage service resource | Central data repository for nematode biology including complete genomic sequence, gene predictions and orthology assignments from range of related nematodes.Data concerning genetics, genomics and biology of C. elegans and related nematodes. Derived from initial ACeDB database of C. elegans genetic and sequence information, WormBase includes genomic, anatomical and functional information of C. elegans, other Caenorhabditis species and other nematodes. Maintains public FTP site where researchers can find many commonly requested files and datasets, WormBase software and prepackaged databases. | RIN, Resource Information Network, catalog, database, blast, genomic sequence, gene prediction, orthology assignment, gene function, ortholog, roundworm, geneotype, phenotype, gene mapping, genomics, gene expression, transposon family, c elegans, wormmart, FASEB list, RRID Community Authority |
uses: InterMOD is used by: NIF Data Federation is used by: Resource Identification Portal is used by: PhenoGO is used by: Integrated Animals is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: OMICtools is listed by: re3data.org is listed by: InterMOD is listed by: Resource Information Network is affiliated with: InterMOD is related to: AmiGO is related to: GBrowse is related to: Textpresso is related to: Expression Patterns for C. elegans promoter GFP fusions is related to: C. elegans Gene Knockout Consortium is related to: NIH Data Sharing Repositories is related to: UniParc at the EBI is related to: UniParc is related to: Integrated Manually Extracted Annotation is related to: PhenoGO has parent organization: Cold Spring Harbor Laboratory has parent organization: Washington University in St. Louis; Missouri; USA has parent organization: Wellcome Trust Sanger Institute; Hinxton; United Kingdom is parent organization of: C. elegans Development Vocabulary is parent organization of: C. elegans Gross Anatomy Vocabulary is parent organization of: C. elegans Phenotype Vocabulary is parent organization of: OpenWorm works with: A plasmid Editor is organization facet of: Alliance of Genome Resources |
BBSRC ; MRC ; NHGRI ; NHGRI U41 HG002223; NIH Blueprint for Neuroscience Research ; NIHGRI P41 HG02223 |
PMID:24194605 PMID:19910365 PMID:17991679 PMID:15608221 |
nif-0000-00053, OMICS_01664, r3d100010424 | http://www.wormbase.org/#01-23-6, https://doi.org/10.17616/R3089Z | SCR_003098 | , WB, Worm Base, WB REF, WP | 2026-09-12 12:55:51 | 1911 | |||||
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DGAP Resource Report Resource Website 1+ mentions |
DGAP (RRID:SCR_003036) | DGAP | data or information resource, database, experimental protocol, narrative resource, resource | Produce resources to unravel the interface between insulin action, insulin resistance and the genetics of type 2 diabetes including an annotated public database, standardized protocols for gene expression and proteomic analysis, and ultimately diabetes-specific and insulin action-specific DNA chips for investigators in the field. The project aims to identify the sets of the genes involved in insulin action and the predisposition to type 2 diabetes, as well as the secondary changes in gene expression that occur in response to the metabolic abnormalities present in diabetes. There are five major and one pilot project involving human and rodent tissues that are designed to: * Create a database of the genes expressed in insulin-responsive tissues, as well as accessible tissues, that are regulated by insulin, insulin resistance and diabetes. * Assess levels and patterns of gene expression in each tissue before and after insulin stimulation in normal and genetically-modified rodents; normal, insulin resistant and diabetic humans, and in cultured and freshly isolated cell models. * Correlate the level and patterns of expression at the mRNA and/or protein level with the genetic and metabolic phenotype of the animal or cell. * Generate genomic sequence from a panel of humans with type 2 diabetes focusing on the genes most highly regulated by insulin and diabetes to determine the range of sequence and expression variation in these genes and the proteins they encode, which might affect the risk of diabetes or insulin resistance. The DGAP project will define: * the normal anatomy of gene expression, i.e. basal levels of expression and response to insulin. * the morbid anatomy of gene expression, i.e., the impact of diabetes on expression patterns and the insulin response. * the extent to which genetic variability might contribute to the alterations in expression or to diabetes itself. | gene, insulin action, predisposition, gene expression, metabolic abnormality, diabetes, insulin resistance, genetics, insulin, genetic variation, proteomics, genomics, affymetrix oligonucleotide array, microarray, protein, genomic sequence, data set |
is related to: NIDDK Information Network (dkNET) has parent organization: Harvard Medical School; Massachusetts; USA has parent organization: Broad Institute has parent organization: Dana-Farber Cancer Institute has parent organization: University of Massachusetts Medical School; Massachusetts; USA has parent organization: University of Southern Denmark; Odense; Denmark |
Type 2 diabetes, Normal, Insulin resistance | NIDDK | PMID:19786482 | THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-30414 | SCR_003036 | The Diabetes Genome Anatomy Project, Diabetes Genome Anatomy Project | 2026-09-12 12:55:50 | 9 | ||||
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dbVar Resource Report Resource Website 100+ mentions |
dbVar (RRID:SCR_003219) | dbVar | data or information resource, data repository, database, service resource, storage service resource | Structural variation database designed to store data on variant DNA > / = 1 bp in size from all organisms. Associations of defined variants with phenotype information is also provided. Users can browse data containing number of variant cells from each study, and filter studies by organism, study type, method and genomic variant. Organisms include human, mouse, cattle and several additional animals. | structure, variation, structural variation, genetics, insertion, deletion, copy number variant, inversion, translocation, genomic imbalance, genotype, gene expression, dna, genomics, phenotype, genetic code |
is recommended by: National Library of Medicine is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is related to: Database of Genomic Variants Archive (DGVa) is related to: Database of Genomic Variants has parent organization: NCBI |
PMID:23193291 | Free, Freely available | nlx_157217, r3d100010758 | https://doi.org/10.17616/R3V610 | SCR_003219 | dbVar, Database of Genomic Structural Variation, NCBI dbVar | 2026-09-12 12:55:53 | 198 | |||||
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miRBase Resource Report Resource Website 10000+ mentions |
miRBase (RRID:SCR_003152) | miRBase | data or information resource, data repository, database, naming service, service resource, storage service resource | Central online repository for microRNA nomenclature, sequence data, annotation and target prediction.Collection of published miRNA sequences and annotation. | gene, annotation, hairpin, microrna, nomenclature, rna, sequence, target, transcript, unique name, mirna registry, genetics, bio.tools, FASEB list |
is recommended by: NIDDK Information Network (dkNET) is recommended by: NIDDK - National Institute of Diabetes and Digestive and Kidney Diseases is listed by: re3data.org is listed by: bio.tools is listed by: Debian has parent organization: University of Manchester; Manchester; United Kingdom |
BBSRC ; Wellcome Trust Sanger Institute |
PMID:24275495 PMID:21037258 PMID:20205188 PMID:17991681 PMID:16957372 PMID:16381832 PMID:14681370 |
Free, Available for download, Freely available | SCR_017497, r3d100010670, nif-0000-03134, biotools:mirbase | http://microrna.sanger.ac.uk/, https://bio.tools/mirbase, https://doi.org/10.17616/R3VG8D | SCR_003152 | microRNA database | 2026-09-12 12:55:52 | 10387 | ||||
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Nuclear Receptor Resource Resource Report Resource Website 1+ mentions |
Nuclear Receptor Resource (RRID:SCR_003285) | NRR | data or information resource, database, resource | Collection of individual databases on members of the steroid and thyroid hormone receptor superfamily. Although the databases are located on different servers and are managed individually, they each form a node of the NRR. The NRR itself integrates the separate databases and allows an interactive forum for the dissemination of information about the superfamily. NRR Components: Androgen receptor, Estrogen receptor, Glucocorticoid receptor, Peroxisome proliferator, Steroid receptor protein, Thyroid receptor, Vitamin D receptor. | nuclear receptor, androgen receptor, estrogen receptor, glucocorticoid receptor, peroxisome proliferator, steroid receptor protein, thyroid receptor, vitamin d receptor, androgen, estrogen, glucocorticoid, peroxisome, steroid, thyroid hormone, vitamin d, mineralocorticoid receptor, mineralocorticoid, protein, structure, function |
is related to: NIDDK Information Network (dkNET) has parent organization: Georgetown University; Washington D.C.; USA |
NIDDK R01DK43382; NIDDK K04 DK02105 |
PMID:9471621 PMID:9016529 |
THIS RESOURCE IS NO LONGER IN SERVICE | nif-0000-03205 | http://nrr.georgetown.edu/NRR/nrrhome.htm | SCR_003285 | Nuclear Receptor Resource Project, NRR Project, Nuclear Receptor Resource (NRR) Project | 2026-09-12 12:55:55 | 1 |
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